BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029740
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 118/176 (67%), Gaps = 8/176 (4%)
Query: 7 VSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 66
+SA +T S + + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ +
Sbjct: 51 LSADPETFSKN--RELEVIHSRWAMLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSE 107
Query: 67 NTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLA 121
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA
Sbjct: 108 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 167
Query: 122 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 177
DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 168 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 118/176 (67%), Gaps = 8/176 (4%)
Query: 7 VSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 66
+SA +T S + + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ +
Sbjct: 51 LSADPETFSKN--RELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSE 107
Query: 67 NTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLA 121
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA
Sbjct: 108 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 167
Query: 122 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 177
DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 168 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 107/157 (68%), Gaps = 6/157 (3%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 80
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 65 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 123
Query: 81 VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 137
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 124 ILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 183
Query: 138 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 174
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 184 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 93/164 (56%), Gaps = 12/164 (7%)
Query: 19 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIP 77
Y+ ELIH RWAML G ++PEA +G W K L G Y G +P
Sbjct: 83 YKESELIHCRWAMLAVPGILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVP 134
Query: 78 INLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 136
+ ++A E + + E+ R D E K +PGG FDPLG +KDP + LKVKEIK
Sbjct: 135 WGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIK 193
Query: 137 NGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 179
NGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN+ ++
Sbjct: 194 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 237
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 115 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 150
FDPLGL + P K E+ + R AM A+ G +
Sbjct: 68 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILV 103
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 12/159 (7%)
Query: 19 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 77
++ ELIH RWAML G + E W G + L++G++ Y G+ +P
Sbjct: 92 FRECELIHGRWAMLATLGALTVEGLTGI--------TWQDAGKVELIEGSS--YLGQPLP 141
Query: 78 INLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 137
++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ +L++ EIK+
Sbjct: 142 FSMTTLIWIEVLVIGYIEFQRNAE-LDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKH 200
Query: 138 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 176
RLAM LGF +QA VTG+GP+ N HLSDP +L
Sbjct: 201 ARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTIL 239
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 91/160 (56%), Gaps = 12/160 (7%)
Query: 19 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIP 77
Y+ ELIH RWAML G ++PEA +G W K L G Y G +P
Sbjct: 35 YKESELIHCRWAMLAVPGILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVP 86
Query: 78 INLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 136
+ ++A E + + E+ R D E K +PGG FDPLG +KDP + LKVKEIK
Sbjct: 87 WGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIK 145
Query: 137 NGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNL 175
NGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN+
Sbjct: 146 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 185
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 115 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 150
FDPLGL + P K E+ + R AM A+ G +
Sbjct: 20 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILV 55
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 99/177 (55%), Gaps = 26/177 (14%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV 81
E+I+ R+AMLGA G I PE K G A+ WF+TG + T NY+ + +
Sbjct: 103 EIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL--- 158
Query: 82 FAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-DPLGLAK 122
+ E+ L+G AE+ R + L LE L +PGGPF +PLG K
Sbjct: 159 --FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGK 216
Query: 123 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 179
D LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 217 DEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 88/156 (56%), Gaps = 12/156 (7%)
Query: 19 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIP 77
Y+ ELIH RWAML G ++PEA +G W K L G Y G +P
Sbjct: 23 YKESELIHCRWAMLAVPGILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVP 74
Query: 78 INLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 136
+ ++A E + + E+ R D E K +PGG FDPLG +KDP + LKVKEIK
Sbjct: 75 WGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIK 133
Query: 137 NGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 171
NGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 134 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 115 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 150
FDPLGL + P K E+ + R AM A+ G +
Sbjct: 8 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILV 43
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 92/166 (55%), Gaps = 26/166 (15%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV 81
E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T Y+ N +
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYTYWADNYTL--- 61
Query: 82 FAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-DPLGLAK 122
+ E+ L+G AE+ R+ + L LE L +PGGPF +PLG K
Sbjct: 62 --FVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGK 119
Query: 123 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 168
D LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+
Sbjct: 120 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 81/166 (48%), Gaps = 32/166 (19%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 82
EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 13 ELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF---------- 60
Query: 83 AVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDP 124
I E+V +G AE R N L D +PGG FDPLG + P
Sbjct: 61 --IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASP 118
Query: 125 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 170
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 119 QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 164
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 83/170 (48%), Gaps = 33/170 (19%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 82
EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 106 ELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF---------- 153
Query: 83 AVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDP 124
I E+V +G AE R N L D +PGG FDPLG + P
Sbjct: 154 --IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASP 211
Query: 125 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 173
+ L+ KEIKNGRLAM A++G + Q TG GP++NL A HL+DP A
Sbjct: 212 QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 115 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158
FDPLGL DP+ E+ + R AM G F+ ++T G
Sbjct: 87 FDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 81/166 (48%), Gaps = 32/166 (19%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 82
EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 33 ELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF---------- 80
Query: 83 AVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDP 124
I E+V +G AE R N L D +PGG FDPLG + P
Sbjct: 81 --IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASP 138
Query: 125 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 170
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 139 QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 184
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 115 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 155
FDPLGL+ DP+ E+ + R AM G F+ ++T
Sbjct: 14 FDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLT 54
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 86/160 (53%), Gaps = 26/160 (16%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV 81
E+I+ R+AMLGA G I PE K G A+ WF+TG + G T NY+ N +
Sbjct: 19 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL--- 74
Query: 82 FAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-DPLGLAK 122
+ E+ L+G AE+ R + L LE +PGGPF +PLG K
Sbjct: 75 --FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK 132
Query: 123 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 162
D LK+KE+KNGRLAM A+LG+F+Q VTG GP +N
Sbjct: 133 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 28/170 (16%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 82
EL++ RWAMLG AG ++PE F G P+ W+ G YF + + ++
Sbjct: 11 ELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIE 61
Query: 83 AVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFAL 129
+++ V + + I N G +D + +PGG F+PL A +
Sbjct: 62 FILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEA--- 116
Query: 130 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 179
K KEI NGRLAM A LGF +Q VTG+GP +NL +H+SDP+ N ++ +
Sbjct: 117 -KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 29/173 (16%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 82
EL++ RWAMLG AG ++PE F G P+ W+ G YF + + ++
Sbjct: 95 ELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIE 145
Query: 83 AVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFAL 129
+++ V + + I N G +D + +PGG F+PL A +
Sbjct: 146 FILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEA--- 200
Query: 130 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 182
K KEI NGRL M A LGF +Q VTG+GP +NL +H+SDP+ N ++ + GN
Sbjct: 201 -KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 251
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 115 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158
FDPLGLA+DP+ E+ NGR AM + G L T G
Sbjct: 76 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 29/167 (17%)
Query: 23 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 82
EL++ RWAMLG AG ++PE F G P+ W+ G YF + + ++
Sbjct: 15 ELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIE 65
Query: 83 AVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFAL 129
+++ V + + I N G +D + +PGG F+PL A +
Sbjct: 66 FILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEA--- 120
Query: 130 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 176
K KEI NGRL M A LGF +Q VTG+GP +NL +H+SDP+ N ++
Sbjct: 121 -KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV 165
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 120 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158
LA+DP+ E+ NGR AM + G L T G
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 39
>pdb|1YUE|A Chain A, Bacteriophage T4 Capsid Vertex Protein Gp24
Length = 427
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 71 YFGKNIPINLVFAVIAEIV----LVGGAEYYRITNGLDLEDKLHPGG 113
Y N P++ V + E + +VG Y T GLDL+D H G
Sbjct: 313 YCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGA 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,163,907
Number of Sequences: 62578
Number of extensions: 271538
Number of successful extensions: 493
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 31
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)