Query 029740
Match_columns 189
No_of_seqs 136 out of 1183
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 1.8E-47 3.9E-52 327.0 13.8 172 5-179 79-255 (262)
2 PLN00099 light-harvesting comp 100.0 2.3E-47 5E-52 323.7 12.0 166 5-181 70-238 (243)
3 PLN00171 photosystem light-ha 100.0 1.8E-46 3.8E-51 327.5 13.9 174 5-180 136-323 (324)
4 PLN00187 photosystem II light- 100.0 2.8E-46 6.1E-51 322.6 13.1 156 15-180 129-285 (286)
5 PLN00147 light-harvesting comp 100.0 7.4E-45 1.6E-49 309.6 13.1 163 5-182 71-252 (252)
6 PLN00098 light-harvesting comp 100.0 3.8E-44 8.2E-49 307.3 13.1 161 5-181 88-266 (267)
7 PLN00101 Photosystem I light-h 100.0 2.2E-44 4.8E-49 306.2 11.3 152 11-180 83-250 (250)
8 PLN00097 photosystem I light h 100.0 1.5E-43 3.2E-48 300.1 12.4 157 5-176 70-243 (244)
9 PLN00048 photosystem I light h 100.0 1.1E-43 2.5E-48 304.0 11.6 160 15-180 81-260 (262)
10 PLN00100 light-harvesting comp 100.0 3.4E-42 7.5E-47 291.7 10.9 148 5-179 61-209 (246)
11 PLN00170 photosystem II light- 100.0 2.9E-36 6.4E-41 256.8 10.6 136 11-164 87-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 2E-35 4.3E-40 246.3 11.0 137 6-160 63-207 (209)
13 PLN00120 fucoxanthin-chlorophy 100.0 4.2E-34 9.1E-39 237.4 11.1 143 5-160 50-198 (202)
14 PF00504 Chloroa_b-bind: Chlor 100.0 2E-33 4.3E-38 223.6 7.7 123 15-153 25-156 (156)
15 PLN00098 light-harvesting comp 99.6 4.5E-16 9.6E-21 134.1 6.3 55 107-161 76-131 (267)
16 PLN00101 Photosystem I light-h 99.6 8.1E-16 1.7E-20 131.4 5.9 54 107-160 67-121 (250)
17 PLN00147 light-harvesting comp 99.6 2.8E-15 6.1E-20 128.3 5.6 52 107-158 59-111 (252)
18 PLN00097 photosystem I light h 99.5 7.4E-15 1.6E-19 125.1 5.6 53 107-159 58-111 (244)
19 PLN00171 photosystem light-ha 99.5 6.9E-15 1.5E-19 129.3 5.3 52 107-158 124-176 (324)
20 PLN00025 photosystem II light 99.5 1E-14 2.2E-19 125.4 5.5 51 107-157 67-118 (262)
21 PLN00170 photosystem II light- 99.5 1.2E-14 2.5E-19 124.6 5.6 52 107-158 71-123 (255)
22 PLN00100 light-harvesting comp 99.5 2.5E-14 5.5E-19 121.8 5.3 50 107-156 49-99 (246)
23 PLN00099 light-harvesting comp 99.5 3.4E-14 7.4E-19 121.1 4.9 50 107-156 58-108 (243)
24 PLN00187 photosystem II light- 99.5 4E-14 8.6E-19 123.0 4.6 51 107-157 66-160 (286)
25 PLN00048 photosystem I light h 99.4 1.6E-13 3.4E-18 118.2 5.0 55 107-161 56-116 (262)
26 PLN00089 fucoxanthin-chlorophy 99.4 3.2E-13 7E-18 113.0 5.9 48 111-158 54-103 (209)
27 PF00504 Chloroa_b-bind: Chlor 99.4 4.5E-13 9.9E-18 106.5 5.5 50 107-157 6-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.2 1.4E-11 3E-16 102.7 3.5 44 110-153 42-87 (202)
29 PLN00084 photosystem II subuni 98.2 1.5E-06 3.2E-11 70.8 3.2 48 125-172 130-178 (214)
30 PHA02337 putative high light i 98.1 2.6E-06 5.6E-11 52.1 3.0 29 131-159 3-31 (35)
31 PLN00014 light-harvesting-like 97.5 6.9E-05 1.5E-09 63.6 3.1 37 130-166 159-195 (250)
32 PHA02337 putative high light i 97.2 0.00019 4.2E-09 43.9 1.3 26 20-45 3-28 (35)
33 PLN00014 light-harvesting-like 94.9 0.013 2.8E-07 50.0 1.5 26 20-45 160-185 (250)
34 PLN00084 photosystem II subuni 91.9 0.043 9.3E-07 45.1 -0.2 32 13-44 129-160 (214)
35 PHA00649 hypothetical protein 51.1 14 0.00031 26.1 2.3 34 9-43 29-69 (83)
36 PLN02449 ferrochelatase 47.2 14 0.0003 35.0 2.3 21 140-160 463-483 (485)
37 KOG2342 Uncharacterized conser 25.5 15 0.00033 32.3 -1.1 13 24-36 61-73 (280)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=327.02 Aligned_cols=172 Identities=52% Similarity=0.847 Sum_probs=145.1
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchH--HH-H
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--NL-V 81 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~--~~-~ 81 (189)
|.++ .|+++++||||+|||||||||||++|+++||+++..|..+. +..|+++|...++.+.++|++++..+ +. .
T Consensus 79 lGls--~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~-~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~ 155 (262)
T PLN00025 79 AGLS--ADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSIL 155 (262)
T ss_pred cccc--cCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcC-cccccccccccccccccccccCcccchhhhHH
Confidence 3454 48999999999999999999999999999999876554332 45799999877777778898876432 22 2
Q ss_pred HHHHHHHHHHhhhhhhhcccCc--CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcc
Q 029740 82 FAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 159 (189)
Q Consensus 82 ~a~~~qv~~~g~~E~~~~~~g~--~~~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gp 159 (189)
..+++|++++|++|.+|..++. ...+..||||.||||||.+|+++++++|++|||||||||+|++||++|+.+||++|
T Consensus 156 a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GP 235 (262)
T PLN00025 156 AIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 235 (262)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCCh
Confidence 3347788899999999876532 11256899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhCCcccchhhhhh
Q 029740 160 VENLAKHLSDPFANNLLTVI 179 (189)
Q Consensus 160 l~~l~~~~~~P~~~~~~~~~ 179 (189)
++||.+|++||+++|++++.
T Consensus 236 lenL~~hladP~~~n~~~~~ 255 (262)
T PLN00025 236 LENLADHLADPVANNAWAYA 255 (262)
T ss_pred HHHHHHHhcCccccchhhhh
Confidence 99999999999999998875
No 2
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=2.3e-47 Score=323.73 Aligned_cols=166 Identities=41% Similarity=0.696 Sum_probs=135.1
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhcccc-ccCCcccccccccchHHHH-H
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLV-F 82 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~-~~~~~~~~~~~~~~p~~~~-~ 82 (189)
|.+++ ++++++||||+|||||||||||++||++||.++.. .|++++.. .++++..+|++++.++..+ .
T Consensus 70 lgls~--~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~--------~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~ 139 (243)
T PLN00099 70 LRLGE--VPENLERYKESELIHCRWAMLAVPGILVPEALGLG--------NWVKAQEWAAIPGGQATYLGNPVPWGTLPT 139 (243)
T ss_pred ccccc--CHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccC--------CcccccchhccCcchhhhccCccchhhHHH
Confidence 45554 68999999999999999999999999999997631 36655431 2334445566666554333 3
Q ss_pred HHHHHHHHHhhhhhhhcccCcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHh-hhcCCcchh
Q 029740 83 AVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA-YVTGEGPVE 161 (189)
Q Consensus 83 a~~~qv~~~g~~E~~~~~~g~~~~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~-~v~g~gpl~ 161 (189)
.+++|++++|++|.+|.... ..+++.||||.||||||.+|+++++++|++|||||||||+|++||++|+ .+||++|++
T Consensus 140 ~~~iqvl~ig~~E~~r~~~~-~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~ 218 (243)
T PLN00099 140 ILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 218 (243)
T ss_pred HHHHHHHHHHHHHHHhhccC-CCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHH
Confidence 45889889999999876432 2235679999999999999999999999999999999999999999999 579999999
Q ss_pred hhhhhhCCcccchhhhhhcc
Q 029740 162 NLAKHLSDPFANNLLTVISG 181 (189)
Q Consensus 162 ~l~~~~~~P~~~~~~~~~~~ 181 (189)
||.+|++||+++|+.+.+..
T Consensus 219 nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 219 NLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHhcCCccCceeeeecc
Confidence 99999999999999998854
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.8e-46 Score=327.48 Aligned_cols=174 Identities=48% Similarity=0.760 Sum_probs=144.4
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccch-----HH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----IN 79 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p-----~~ 79 (189)
|+|++ |+++++||||+|||||||||||++|+++||+++++|....++..|+++|...+++..++|++.+.. ..
T Consensus 136 LGL~~--dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~ 213 (324)
T PLN00171 136 AGLGK--DPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQG 213 (324)
T ss_pred ccccc--CHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHH
Confidence 56655 789999999999999999999999999999988766543345679999987777776777665431 22
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCc--------CCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHH
Q 029740 80 LVFAVIAEIVLVGGAEYYRITNGL--------DLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 150 (189)
Q Consensus 80 ~~~a~~~qv~~~g~~E~~~~~~g~--------~~~~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~ 150 (189)
+...+++|+++++++|++|+.+.. ..+|..|||+ +|||+|+.+|+++++++|++|||||||||+|++||++
T Consensus 214 l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~v 293 (324)
T PLN00171 214 VIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI 293 (324)
T ss_pred HHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334458899999888998866411 1234457887 5999999999999999999999999999999999999
Q ss_pred HhhhcCCcchhhhhhhhCCcccchhhhhhc
Q 029740 151 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 180 (189)
Q Consensus 151 q~~v~g~gpl~~l~~~~~~P~~~~~~~~~~ 180 (189)
|+.+||++|++||.+|++||++||+++++.
T Consensus 294 q~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 294 QAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred hHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 999999999999999999999999999874
No 4
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.8e-46 Score=322.63 Aligned_cols=156 Identities=40% Similarity=0.713 Sum_probs=134.5
Q ss_pred hHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHHHHHHHHHhhh
Q 029740 15 SASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 94 (189)
Q Consensus 15 ~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~~~qv~~~g~~ 94 (189)
.++||||+|||||||||||++||++||++.. ..|+++|...+..+ ..|++.+.|+.+...+++|++++|++
T Consensus 129 ~l~r~REaELiHGRwAMLAvaG~lvpEll~G--------~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~ 199 (286)
T PLN00187 129 GLQRFRECELIHGRWAMLATLGALSVEALTG--------VTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYI 199 (286)
T ss_pred HHHHHHHHHhhhhHHHHHHhhchhhHHhccC--------Cccccccccccccc-ccccccccchhHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999742 25988887544322 35777776665455568899999999
Q ss_pred hhhhcccCcCCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcchhhhhhhhCCcccc
Q 029740 95 EYYRITNGLDLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 173 (189)
Q Consensus 95 E~~~~~~g~~~~~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl~~l~~~~~~P~~~ 173 (189)
|++|..+. +..+..|||| .||||||.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+|+++|+++
T Consensus 200 E~~R~~~~-~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~ 278 (286)
T PLN00187 200 EFQRNAEL-DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 278 (286)
T ss_pred HhhhccCC-CCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccc
Confidence 99997652 2345679999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhc
Q 029740 174 NLLTVIS 180 (189)
Q Consensus 174 ~~~~~~~ 180 (189)
|+++++.
T Consensus 279 n~~~~~~ 285 (286)
T PLN00187 279 TIIDTFS 285 (286)
T ss_pred cHHHhcc
Confidence 9999875
No 5
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=7.4e-45 Score=309.65 Aligned_cols=163 Identities=40% Similarity=0.642 Sum_probs=132.3
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 84 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~ 84 (189)
|.++ +|+++++||||+|||||||||||++|++++|+++..|.... ..|++++...++ +.+ ....+
T Consensus 71 lgl~--~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~--p~w~~ag~~~~~------~~~-----~~~~~ 135 (252)
T PLN00147 71 LGLG--EDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNL--PVWYEAGAVKFE------FAS-----TRTLF 135 (252)
T ss_pred cccc--CCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCC--cchhhcccchhc------ccc-----chHHH
Confidence 4454 47899999999999999999999999999999887665332 358887643221 111 12234
Q ss_pred HHHHHHHhhhhhhhcccCc------------------CCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHH
Q 029740 85 IAEIVLVGGAEYYRITNGL------------------DLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 145 (189)
Q Consensus 85 ~~qv~~~g~~E~~~~~~g~------------------~~~~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~ 145 (189)
++|++++|++|.+|+.+.. ...+..|||| +||||||.+|+++++++|++|||||||||+|+
T Consensus 136 ~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~ 215 (252)
T PLN00147 136 VVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAM 215 (252)
T ss_pred HHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 7788889999998753210 0012458999 69999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchhhhhhhhCCcccchhhhhhccc
Q 029740 146 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 182 (189)
Q Consensus 146 ~G~i~q~~v~g~gpl~~l~~~~~~P~~~~~~~~~~~~ 182 (189)
+||++|+.+||++|++||.+|++||++||+.+++.++
T Consensus 216 ~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 216 LGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred HHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcCC
Confidence 9999999999999999999999999999999998764
No 6
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=3.8e-44 Score=307.29 Aligned_cols=161 Identities=40% Similarity=0.685 Sum_probs=131.5
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 84 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~ 84 (189)
|.++ +|+++++||||+|||||||||||++|+++||++++.|... ...|+++|.. .|++.+ ...+
T Consensus 88 lgl~--~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~--~~~w~~Ag~~-------~~~~~~-----~~l~ 151 (267)
T PLN00098 88 LGLG--SDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE--NFSWYDAGAR-------EYFADP-----TTLF 151 (267)
T ss_pred cccC--CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc--ccccccccch-------hhccCc-----hHHH
Confidence 3444 5689999999999999999999999999999988765432 2368887753 233332 1234
Q ss_pred HHHHHHHhhhhhhhcccCc-----C-----------CCCCCCCCC-CCCCCCCCC-ChHHHHHHHHHHHhchhhHHHHHH
Q 029740 85 IAEIVLVGGAEYYRITNGL-----D-----------LEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAML 146 (189)
Q Consensus 85 ~~qv~~~g~~E~~~~~~g~-----~-----------~~~~~~PG~-~fDPlgl~~-d~~~~~~~~~~ElkNGRLAMla~~ 146 (189)
++|+++||++|.+|+.+-. . ..+..|||| +|||+||.+ |+++++++|++|||||||||+|++
T Consensus 152 ~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~ 231 (267)
T PLN00098 152 VVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFV 231 (267)
T ss_pred HHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6788899999998865411 0 013479999 699999975 889999999999999999999999
Q ss_pred HHHHHhhhcCCcchhhhhhhhCCcccchhhhhhcc
Q 029740 147 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 181 (189)
Q Consensus 147 G~i~q~~v~g~gpl~~l~~~~~~P~~~~~~~~~~~ 181 (189)
||++|+.+||++|++||.+|++||+++|+.+++.+
T Consensus 232 G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 232 GFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred HHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999999999999999999999999999998754
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=306.24 Aligned_cols=152 Identities=39% Similarity=0.673 Sum_probs=125.4
Q ss_pred CChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHHHHHHHH
Q 029740 11 NQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 90 (189)
Q Consensus 11 ~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~~~qv~~ 90 (189)
+|+++++||||+|||||||||||++|+++||+++..|.... ..|+++|... |++.. ...+++|+++
T Consensus 83 ~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~--p~w~~ag~~~-------~~~~~-----~~l~~ie~~~ 148 (250)
T PLN00101 83 EDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINA--PQWYDAGKAE-------YFASS-----STLFVIEFIL 148 (250)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCC--Cccccccchh-------hcccc-----hHHHHHHHHH
Confidence 47999999999999999999999999999999987765443 3699887532 33322 1234668888
Q ss_pred HhhhhhhhcccCc----------------CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhh
Q 029740 91 VGGAEYYRITNGL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 154 (189)
Q Consensus 91 ~g~~E~~~~~~g~----------------~~~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v 154 (189)
++++|++|+.+-. ..+|..|||+.||||||.+++ ++|+||||||||||+|++||++|+.+
T Consensus 149 mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~v 224 (250)
T PLN00101 149 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNV 224 (250)
T ss_pred HHHHHHHHhhcccCCCcccccccccccccCCccccCCCCccCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehc
Confidence 9999999875411 112446899899999998763 67999999999999999999999999
Q ss_pred cCCcchhhhhhhhCCcccchhhhhhc
Q 029740 155 TGEGPVENLAKHLSDPFANNLLTVIS 180 (189)
Q Consensus 155 ~g~gpl~~l~~~~~~P~~~~~~~~~~ 180 (189)
||++|++||.+|++||+++|+.+++.
T Consensus 225 TG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 225 TGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred cCCChHHHHHHHhcCCcccchhhhcC
Confidence 99999999999999999999999873
No 8
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.5e-43 Score=300.12 Aligned_cols=157 Identities=38% Similarity=0.544 Sum_probs=128.1
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 84 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~ 84 (189)
|.++ +|+++++||||+|||||||||||++|+++||+++..|... ...|++++... .|+... ...+
T Consensus 70 lGl~--~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~--~p~W~~Ag~~~------~~~~~~-----~~l~ 134 (244)
T PLN00097 70 LNLG--ADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD--LPNWIDAAKWD------GYWAGA-----GPLF 134 (244)
T ss_pred cccC--cCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--CCccccCCcch------hccccc-----hhHH
Confidence 4454 4799999999999999999999999999999998776533 23699887531 122211 1224
Q ss_pred HHHHHHHhhhhhhhcccCc-----------------CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHH
Q 029740 85 IAEIVLVGGAEYYRITNGL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 147 (189)
Q Consensus 85 ~~qv~~~g~~E~~~~~~g~-----------------~~~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G 147 (189)
++|+++++++|++|+.+.. ..+|..|||+.||||||.+|+++++++|++|||||||||+|++|
T Consensus 135 ~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G 214 (244)
T PLN00097 135 FIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLG 214 (244)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6688889999998875411 01233588888999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchhhhhhhhCCcccchhh
Q 029740 148 FFLQAYVTGEGPVENLAKHLSDPFANNLL 176 (189)
Q Consensus 148 ~i~q~~v~g~gpl~~l~~~~~~P~~~~~~ 176 (189)
|++|+.+||++|++||.+|++||+++|++
T Consensus 215 ~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 215 CCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred HhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999999999985
No 9
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=1.1e-43 Score=303.99 Aligned_cols=160 Identities=42% Similarity=0.665 Sum_probs=131.5
Q ss_pred hHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCC-cchhhhccccccCCcccccccccchHHHHHHHHHHHHHHhh
Q 029740 15 SASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 93 (189)
Q Consensus 15 ~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p-~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~~~qv~~~g~ 93 (189)
+.+|+||+|||||||||||++|+++||++++.|..... ...|+++|.... ....+|++.+ ...+++|+++||+
T Consensus 81 ~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p-----~~l~~~~~~lmg~ 154 (262)
T PLN00048 81 EPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPP-AGTYDYWADP-----YTLFVLEMALMGF 154 (262)
T ss_pred hHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccccccccccccccccc-ccccccccch-----hHHHHHHHHHhhh
Confidence 67999999999999999999999999999876553221 235998876322 2234566653 1234778889999
Q ss_pred hhhhhcccCc------------------CCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhh
Q 029740 94 AEYYRITNGL------------------DLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 154 (189)
Q Consensus 94 ~E~~~~~~g~------------------~~~~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v 154 (189)
+|++|+++.. ..++..|||| +|||+||.+|+++++++|++|||||||||+|++||++|+.+
T Consensus 155 ~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~ 234 (262)
T PLN00048 155 AEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALV 234 (262)
T ss_pred eeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhh
Confidence 9999876410 0014579999 79999999999999999999999999999999999999999
Q ss_pred cCCcchhhhhhhhCCcccchhhhhhc
Q 029740 155 TGEGPVENLAKHLSDPFANNLLTVIS 180 (189)
Q Consensus 155 ~g~gpl~~l~~~~~~P~~~~~~~~~~ 180 (189)
||++|++||.+|++||+++|+++++.
T Consensus 235 tg~gp~~~L~~hladP~~~ni~~~~~ 260 (262)
T PLN00048 235 TGVGPFQNLLDHLADPVNNNVLTNLK 260 (262)
T ss_pred cCCCHHHHHHHHhcCccccccccccc
Confidence 99999999999999999999999985
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=3.4e-42 Score=291.68 Aligned_cols=148 Identities=32% Similarity=0.473 Sum_probs=120.0
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 84 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~ 84 (189)
|+++ .|+++++||||+|||||||||||++|+++||+++.+ .|+++|...+. .+ ...++
T Consensus 61 lgl~--~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P--------~w~~ag~~~~~-------~~-----~~~l~ 118 (246)
T PLN00100 61 LRLG--ANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLP--------KFWEAGAEKYG-------LD-----LQTLV 118 (246)
T ss_pred cccC--CCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhccc--------chhhcchhhhc-------cc-----hhHHH
Confidence 4454 378899999999999999999999999999997643 47776643221 11 12334
Q ss_pred HHHHHHHhhhhhhhcccCcCCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcchhhh
Q 029740 85 IAEIVLVGGAEYYRITNGLDLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 163 (189)
Q Consensus 85 ~~qv~~~g~~E~~~~~~g~~~~~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl~~l 163 (189)
++|++++|++|.+|+.+-...++...||| +|||||+.+ +++|+||||||||||+|++||++|+.+||++|++||
T Consensus 119 ~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL 193 (246)
T PLN00100 119 LIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGL 193 (246)
T ss_pred HHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHH
Confidence 78998999999998765322234456888 899999963 478999999999999999999999999999999999
Q ss_pred hhhhCCcccchhhhhh
Q 029740 164 AKHLSDPFANNLLTVI 179 (189)
Q Consensus 164 ~~~~~~P~~~~~~~~~ 179 (189)
.+|+++|+++|++++.
T Consensus 194 ~~hladP~~~ni~~~~ 209 (246)
T PLN00100 194 KAHMANPGHVNIFTSS 209 (246)
T ss_pred HHhccCCcccccccCC
Confidence 9999999999999874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=2.9e-36 Score=256.83 Aligned_cols=136 Identities=35% Similarity=0.552 Sum_probs=109.2
Q ss_pred CChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHHHHHHHH
Q 029740 11 NQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 90 (189)
Q Consensus 11 ~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~~~qv~~ 90 (189)
+|+++++||||+|||||||||||++|++++|.++. ..|+++|.... ++ .|......+++|+++
T Consensus 87 ~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g--------~~w~~aG~~~~------~~---~p~~~~~l~~~q~~l 149 (255)
T PLN00170 87 KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG--------IPWFEAGADPG------AI---APFSFGSLLGTQLLL 149 (255)
T ss_pred CCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC--------CChhhCCcccc------cc---CccchHHHHHHHHHH
Confidence 58999999999999999999999999999998752 25998885321 11 122222334789999
Q ss_pred HhhhhhhhcccCcC----------------------CCCCCCCCC-CCCCCCCCC---------ChHHHHHHHHHHHhch
Q 029740 91 VGGAEYYRITNGLD----------------------LEDKLHPGG-PFDPLGLAK---------DPDQFALLKVKEIKNG 138 (189)
Q Consensus 91 ~g~~E~~~~~~g~~----------------------~~~~~~PG~-~fDPlgl~~---------d~~~~~~~~~~ElkNG 138 (189)
||++|.+|+.+... .++..|||+ .||||||.+ |+++++++|++|||||
T Consensus 150 mg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnG 229 (255)
T PLN00170 150 MGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHA 229 (255)
T ss_pred hhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhh
Confidence 99999999764210 123458998 599999985 7889999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCcchhhhh
Q 029740 139 RLAMFAMLGFFLQAYVTGEGPVENLA 164 (189)
Q Consensus 139 RLAMla~~G~i~q~~v~g~gpl~~l~ 164 (189)
||||+|++||++|+ .||++|+++|.
T Consensus 230 RLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 230 RLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred HHHHHHHHhHheee-ccCCCchhhhc
Confidence 99999999999999 69999999874
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=246.35 Aligned_cols=137 Identities=29% Similarity=0.329 Sum_probs=99.3
Q ss_pred eeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCC--CcchhhhccccccCCcccccccccchHHHHHH
Q 029740 6 LVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG--PEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 83 (189)
Q Consensus 6 ~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~--p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a 83 (189)
.+++ .++++++||||+||||||+||||++|+++||.++.||.... ....|+.+.. .++..
T Consensus 63 gl~~-~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~-----------------~~~~~ 124 (209)
T PLN00089 63 GLAE-KVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHD-----------------ALLKS 124 (209)
T ss_pred cCCC-CCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHH-----------------hhccc
Confidence 4444 45678999999999999999999999999999887764210 0001111100 01111
Q ss_pred H-HHHHHH-HhhhhhhhcccC--cCCCCCCCCCC-CCCCCCCC-CChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCC
Q 029740 84 V-IAEIVL-VGGAEYYRITNG--LDLEDKLHPGG-PFDPLGLA-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 157 (189)
Q Consensus 84 ~-~~qv~~-~g~~E~~~~~~g--~~~~~~~~PG~-~fDPlgl~-~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~ 157 (189)
. +.|+++ +|++|....... ...++.++||| +|||+||. +|+++++++|++|||||||||+|++|+++|+.+||+
T Consensus 125 g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~ 204 (209)
T PLN00089 125 GAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGH 204 (209)
T ss_pred ccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC
Confidence 2 467765 899995322111 11234578999 89999995 689999999999999999999999999999999998
Q ss_pred cch
Q 029740 158 GPV 160 (189)
Q Consensus 158 gpl 160 (189)
+.+
T Consensus 205 g~~ 207 (209)
T PLN00089 205 GFP 207 (209)
T ss_pred CCC
Confidence 865
No 13
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=237.36 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=99.6
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhcc-ccCCCCCCCcchhhhccccccCCcccccccccchHHHHHH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 83 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~-~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a 83 (189)
|.++.++|+++++||||+|||||||||||++||+++|.+ +.||... .....+.. ..+ .... ...+...
T Consensus 50 lgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~-~~g~~~~~---~p~--~~~a-----~~~vp~~ 118 (202)
T PLN00120 50 LGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDID-YSGTSFSD---IPN--GFAA-----LDAIPTA 118 (202)
T ss_pred CccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccc-cccccccc---ccc--chhh-----hhhcchh
Confidence 467778899999999999999999999999999999974 4444211 00011100 000 0000 0112234
Q ss_pred HHHHHHH-HhhhhhhhcccCcCCCCCCCCCC-C--CCCCCCCC-ChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCc
Q 029740 84 VIAEIVL-VGGAEYYRITNGLDLEDKLHPGG-P--FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158 (189)
Q Consensus 84 ~~~qv~~-~g~~E~~~~~~g~~~~~~~~PG~-~--fDPlgl~~-d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~g 158 (189)
+|+|+++ +|++|.++..+. .+++++||| . ++++|+.. |+++++++|++|||||||||+||+|+++|+.++|+.
T Consensus 119 g~~qi~~~ig~~E~~~~~~~--~~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~ 196 (202)
T PLN00120 119 GLLQILAFIGFLELAVMKDI--TGEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVEL 196 (202)
T ss_pred HHHHHHHHHHHHHHHhhccc--ccCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 5788775 899998755431 123567885 2 23555553 788899999999999999999999999999999998
Q ss_pred ch
Q 029740 159 PV 160 (189)
Q Consensus 159 pl 160 (189)
|+
T Consensus 197 ~~ 198 (202)
T PLN00120 197 PI 198 (202)
T ss_pred cC
Confidence 86
No 14
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=2e-33 Score=223.56 Aligned_cols=123 Identities=36% Similarity=0.558 Sum_probs=91.5
Q ss_pred hHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCC--CcchhhhccccccCCcccccccccchHHHHHHHHHH-HHHH
Q 029740 15 SASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG--PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE-IVLV 91 (189)
Q Consensus 15 ~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~--p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~~~q-v~~~ 91 (189)
+++|+||+||||||+||||++|++++|++++.+.... ....|.+++. ++ . ...++++ ++++
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~-------~~-----~----~~~~~~~~l~~i 88 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG-------IP-----V----PAAGWAQILLFI 88 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS-------SS-----S----HSHHHHHHHHHH
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh-------hh-----h----hhHHHHHHHHHH
Confidence 9999999999999999999999999999976432111 0112544320 00 1 1223434 4468
Q ss_pred hhhhhhhcccCcC-----CCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhh
Q 029740 92 GGAEYYRITNGLD-----LEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 153 (189)
Q Consensus 92 g~~E~~~~~~g~~-----~~~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~ 153 (189)
|.+|.++...... ..+..+||| +|||+|+.+|+++++++|++|||||||||+|++|+++|+.
T Consensus 89 g~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 89 GALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987654321 235679999 7999999988899999999999999999999999999973
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.62 E-value=4.5e-16 Score=134.12 Aligned_cols=55 Identities=35% Similarity=0.619 Sum_probs=51.1
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcchh
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 161 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl~ 161 (189)
|+.+||| +||||||.+|+++++++|++||||||+||+|++||++|+.+++.+++.
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 5678999 899999999999999999999999999999999999999998877665
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.60 E-value=8.1e-16 Score=131.43 Aligned_cols=54 Identities=39% Similarity=0.678 Sum_probs=51.1
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcch
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 160 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl 160 (189)
|+.+||| +||||||.+|+++++++|++||+||||||+|++|+++|+.+++.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 5678999 89999999999999999999999999999999999999999998776
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.56 E-value=2.8e-15 Score=128.30 Aligned_cols=52 Identities=31% Similarity=0.567 Sum_probs=48.5
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCc
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~g 158 (189)
|+.+||| +||||||.+|+++++++|++||||||+||+|++|+++|+.++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 6778999 899999999999999999999999999999999999999987654
No 18
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.53 E-value=7.4e-15 Score=125.10 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=49.2
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcc
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 159 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gp 159 (189)
|+..||| +||||||++|+++++++|++||+|||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 5678999 8999999999999999999999999999999999999999987643
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.53 E-value=6.9e-15 Score=129.29 Aligned_cols=52 Identities=37% Similarity=0.438 Sum_probs=47.8
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCc
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~g 158 (189)
|+..||| +||||||++|+++++++|++||||||+||+|++|+++|+++++.+
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g 176 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG 176 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence 4567999 999999999999999999999999999999999999999987554
No 20
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.52 E-value=1e-14 Score=125.43 Aligned_cols=51 Identities=29% Similarity=0.488 Sum_probs=47.6
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCC
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 157 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~ 157 (189)
++..||| +||||||++|+++++++|++||+|||+||+|++||++++++++.
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~ 118 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKN 118 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcC
Confidence 5568999 89999999999999999999999999999999999999998754
No 21
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.52 E-value=1.2e-14 Score=124.56 Aligned_cols=52 Identities=40% Similarity=0.648 Sum_probs=48.7
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCc
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~g 158 (189)
++.+||| +|||++|.+|+++++++|++||+||||||+|++||++|+.+++..
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 4678999 899999999999999999999999999999999999999998764
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.49 E-value=2.5e-14 Score=121.83 Aligned_cols=50 Identities=36% Similarity=0.549 Sum_probs=46.6
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcC
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 156 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g 156 (189)
|+..||| +||||||++|+++++++|++||||||+||+|++|+++|+.++.
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~ 99 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL 99 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc
Confidence 5678999 8999999999999999999999999999999999999998753
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.47 E-value=3.4e-14 Score=121.14 Aligned_cols=50 Identities=32% Similarity=0.494 Sum_probs=46.6
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcC
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 156 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g 156 (189)
|+..||| +||||+|++++++++++|++||||||+||+|++|+++|+.++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 5678999 9999999999999999999999999999999999999998653
No 24
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.46 E-value=4e-14 Score=122.99 Aligned_cols=51 Identities=35% Similarity=0.516 Sum_probs=46.4
Q ss_pred CCCCCCC-CCCCCCCCCChHH-------------------------------------------HHHHHHHHHhchhhHH
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQ-------------------------------------------FALLKVKEIKNGRLAM 142 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~-------------------------------------------~~~~~~~ElkNGRLAM 142 (189)
|+..||| +||||||++|++. ++++|+.||+|||+||
T Consensus 66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM 145 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM 145 (286)
T ss_pred cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence 5678999 8999999998885 5999999999999999
Q ss_pred HHHHHHHHHhhhcCC
Q 029740 143 FAMLGFFLQAYVTGE 157 (189)
Q Consensus 143 la~~G~i~q~~v~g~ 157 (189)
+|++||+++|+++|.
T Consensus 146 LAvaG~lvpEll~G~ 160 (286)
T PLN00187 146 LATLGALSVEALTGV 160 (286)
T ss_pred HHhhchhhHHhccCC
Confidence 999999999998754
No 25
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.42 E-value=1.6e-13 Score=118.18 Aligned_cols=55 Identities=33% Similarity=0.490 Sum_probs=45.8
Q ss_pred CCCCCCC-CCCCCCCCCCh-----HHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcchh
Q 029740 107 DKLHPGG-PFDPLGLAKDP-----DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 161 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~-----~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl~ 161 (189)
|+..||| +||||||.+.+ .+.+++|.+||+|||+||+|++||++|+++++.+.+.
T Consensus 56 dG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 56 DGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred CCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 5678999 89999997421 1356789999999999999999999999998776654
No 26
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.40 E-value=3.2e-13 Score=112.99 Aligned_cols=48 Identities=40% Similarity=0.697 Sum_probs=42.7
Q ss_pred CCC-CCCCCCCCC-ChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCc
Q 029740 111 PGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 158 (189)
Q Consensus 111 PG~-~fDPlgl~~-d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~g 158 (189)
.|| +|||||+.+ ++++++++|++||||||+||+|++|+++|+.++..+
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 577 799999985 567799999999999999999999999999976554
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.39 E-value=4.5e-13 Score=106.47 Aligned_cols=50 Identities=48% Similarity=0.790 Sum_probs=45.0
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCC
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 157 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~ 157 (189)
++..+|| +|||++|++++ +++++|..||||||+||+|++|+++++..++.
T Consensus 6 ~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 6 DGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 3457888 89999999887 89999999999999999999999999998763
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.17 E-value=1.4e-11 Score=102.69 Aligned_cols=44 Identities=43% Similarity=0.816 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCC--CChHHHHHHHHHHHhchhhHHHHHHHHHHHhh
Q 029740 110 HPGGPFDPLGLA--KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 153 (189)
Q Consensus 110 ~PG~~fDPlgl~--~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~ 153 (189)
.|.+.|||+||. +|+++++++|.+||||||+||+|++||++|+.
T Consensus 42 ~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 42 APLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 466679999997 46889999999999999999999999999996
No 29
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.16 E-value=1.5e-06 Score=70.78 Aligned_cols=48 Identities=35% Similarity=0.399 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHhhhc-CCcchhhhhhhhCCccc
Q 029740 125 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFA 172 (189)
Q Consensus 125 ~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~-g~gpl~~l~~~~~~P~~ 172 (189)
.+.++.|..|+.||||||+||+.-++.|.+| |+||+.|+......|..
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~ 178 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVI 178 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcch
Confidence 4466788999999999999999999999999 99999999877666654
No 30
>PHA02337 putative high light inducible protein
Probab=98.12 E-value=2.6e-06 Score=52.05 Aligned_cols=29 Identities=31% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHHHHhchhhHHHHHHHHHHHhhhcCCcc
Q 029740 131 KVKEIKNGRLAMFAMLGFFLQAYVTGEGP 159 (189)
Q Consensus 131 ~~~ElkNGRLAMla~~G~i~q~~v~g~gp 159 (189)
...|.-|||+||+|+...+..+..||++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 35799999999999999999999999863
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.51 E-value=6.9e-05 Score=63.62 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=33.5
Q ss_pred HHHHHHhchhhHHHHHHHHHHHhhhcCCcchhhhhhh
Q 029740 130 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 166 (189)
Q Consensus 130 ~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl~~l~~~ 166 (189)
....|+-|||+||+||+..++.+.+||++.+.|+..+
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3568999999999999999999999999999998653
No 32
>PHA02337 putative high light inducible protein
Probab=97.16 E-value=0.00019 Score=43.86 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=23.3
Q ss_pred HHHHhhhhhhHHhhhhhhhhhhcccc
Q 029740 20 QAYELIHARWAMLGAAGFIIPEAFNK 45 (189)
Q Consensus 20 REaELkHGRvAMLA~vG~lv~e~~~~ 45 (189)
..||..+||+||++++-.+..|+.+.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tG 28 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTG 28 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 46999999999999999999998753
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=94.88 E-value=0.013 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.8
Q ss_pred HHHHhhhhhhHHhhhhhhhhhhcccc
Q 029740 20 QAYELIHARWAMLGAAGFIIPEAFNK 45 (189)
Q Consensus 20 REaELkHGRvAMLA~vG~lv~e~~~~ 45 (189)
.++|+.|||+||+|++-.++.|+...
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG 185 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTG 185 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcC
Confidence 57999999999999999999998764
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=91.95 E-value=0.043 Score=45.05 Aligned_cols=32 Identities=34% Similarity=0.384 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHhhhhhhHHhhhhhhhhhhccc
Q 029740 13 TTSASIYQAYELIHARWAMLGAAGFIIPEAFN 44 (189)
Q Consensus 13 ~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~ 44 (189)
+...+-.+.-|+.+||+||++++-.++.|.++
T Consensus 129 ~~~vrEqK~nE~~NGRLAMLGF~~alitE~lT 160 (214)
T PLN00084 129 DDQVREQKPYELFNGRLAMLGFAFAIAGDAVT 160 (214)
T ss_pred HHHHHhccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 34566667789999999999999999999987
No 35
>PHA00649 hypothetical protein
Probab=51.11 E-value=14 Score=26.12 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=26.4
Q ss_pred cCCChhhHHHHHHHHhhhhhh-------HHhhhhhhhhhhcc
Q 029740 9 ARNQTTSASIYQAYELIHARW-------AMLGAAGFIIPEAF 43 (189)
Q Consensus 9 ~~~~~~~l~~~REaELkHGRv-------AMLA~vG~lv~e~~ 43 (189)
.-++|+...-||| .+.|||- .||+++|..+..+.
T Consensus 29 D~~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~iG 69 (83)
T PHA00649 29 DVDVPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVALG 69 (83)
T ss_pred CCCCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4567888888885 7889883 59999998887654
No 36
>PLN02449 ferrochelatase
Probab=47.19 E-value=14 Score=34.97 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhhhcCCcch
Q 029740 140 LAMFAMLGFFLQAYVTGEGPV 160 (189)
Q Consensus 140 LAMla~~G~i~q~~v~g~gpl 160 (189)
+||+||+.+++-++++|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999996
No 37
>KOG2342 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=15 Score=32.27 Aligned_cols=13 Identities=31% Similarity=0.171 Sum_probs=11.1
Q ss_pred hhhhhhHHhhhhh
Q 029740 24 LIHARWAMLGAAG 36 (189)
Q Consensus 24 LkHGRvAMLA~vG 36 (189)
=||||+|||==++
T Consensus 61 ~~~GRvafLln~~ 73 (280)
T KOG2342|consen 61 TKHGRVAFLLNIK 73 (280)
T ss_pred cCCceEEEEEecc
Confidence 4899999997777
Done!