Query 029740
Match_columns 189
No_of_seqs 136 out of 1183
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 7.1E-48 2.4E-52 324.6 13.5 173 5-180 49-226 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 6.1E-48 2.1E-52 325.5 8.3 159 11-179 84-242 (243)
3 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.9E-44 6.4E-49 304.8 3.6 161 11-180 75-238 (241)
4 2wsc_3 LHCA3, type II chloroph 100.0 2.4E-42 8.1E-47 296.8 5.8 165 11-181 85-275 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 4.6E-42 1.6E-46 291.9 3.8 157 5-182 79-251 (251)
6 2wsc_2 LHCA2, type II chloroph 100.0 1.8E-42 6.1E-47 296.6 -1.1 160 5-181 90-268 (269)
7 2bhw_A Chlorophyll A-B binding 99.5 5E-15 1.7E-19 124.4 6.2 50 107-156 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.5 3.2E-15 1.1E-19 126.9 -1.0 54 107-160 67-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.5 4.7E-15 1.6E-19 126.9 -0.1 54 107-160 78-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 3.6E-14 1.2E-18 119.6 2.8 50 107-156 25-118 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 99.4 4.7E-14 1.6E-18 119.1 0.2 49 107-155 59-108 (241)
12 2wsc_3 LHCA3, type II chloroph 99.2 1.6E-13 5.5E-18 117.8 -3.7 52 107-159 70-128 (276)
13 2dpr_A CON-T(K7GLA); conantoxi 73.4 1.9 6.4E-05 23.3 1.7 15 13-27 6-20 (26)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=7.1e-48 Score=324.59 Aligned_cols=173 Identities=48% Similarity=0.835 Sum_probs=144.2
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccch--HH-HH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP--IN-LV 81 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p--~~-~~ 81 (189)
|.|+ +|+++++||||||||||||||||++||++||+++++|..+ ++..|+++|...+++..++|++.+.. .+ +.
T Consensus 49 LGLs--~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~ 125 (232)
T 2bhw_A 49 AGLS--ADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 125 (232)
T ss_dssp TCTT--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHH
T ss_pred CcCC--CCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCC-cccccccccchhccccchhcccCcchhhHHHHH
Confidence 3455 4899999999999999999999999999999998776543 24579998876676656677765431 12 22
Q ss_pred HHHHHHHHHHhhhhhhhcccCc--CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcc
Q 029740 82 FAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 159 (189)
Q Consensus 82 ~a~~~qv~~~g~~E~~~~~~g~--~~~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gp 159 (189)
..+++|++++|++|.+|..++. ...+..+|||.|||||+.+|+++++++|.+|||||||||+|++|+++|+.+||++|
T Consensus 126 ~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~ 205 (232)
T 2bhw_A 126 AIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 205 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCS
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCCh
Confidence 3347888899999999876532 12356799999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhCCcccchhhhhhc
Q 029740 160 VENLAKHLSDPFANNLLTVIS 180 (189)
Q Consensus 160 l~~l~~~~~~P~~~~~~~~~~ 180 (189)
++||.+|+++|+++|+++++.
T Consensus 206 ~~~l~~~~adP~~~n~~~~~~ 226 (232)
T 2bhw_A 206 LENLADHLADPVNNNAWSYAT 226 (232)
T ss_dssp HHHHHHHHHCTTTSSGGGGTT
T ss_pred HHHHHHHhcChHHhHHHHHHH
Confidence 999999999999999999854
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=6.1e-48 Score=325.45 Aligned_cols=159 Identities=39% Similarity=0.720 Sum_probs=135.0
Q ss_pred CChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHHHHHHHH
Q 029740 11 NQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 90 (189)
Q Consensus 11 ~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~~~qv~~ 90 (189)
++..+++||||+|||||||||||++||++||+++. ..|+++|...+++ ..+|++.+.++.+..++++|+++
T Consensus 84 ~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~qv~l 154 (243)
T 3pl9_A 84 SEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWIEVLV 154 (243)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHHHHHH
T ss_pred cchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHHHHHH
Confidence 44457999999999999999999999999999852 2588888655442 35677776665555566889999
Q ss_pred HhhhhhhhcccCcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcchhhhhhhhCCc
Q 029740 91 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 170 (189)
Q Consensus 91 ~g~~E~~~~~~g~~~~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl~~l~~~~~~P 170 (189)
||++|.+|..+ .+.++..+|||.|||||+.+|+++++++|.+|||||||||+|++|+++|+.+||++|++||.+|+++|
T Consensus 155 mG~~E~~R~~~-~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP 233 (243)
T 3pl9_A 155 IGYIEFQRNAE-LDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDP 233 (243)
T ss_dssp HHHHHHHHHSC-CCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCS
T ss_pred HHHHHHHhhcc-cCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCc
Confidence 99999999875 22345579999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhh
Q 029740 171 FANNLLTVI 179 (189)
Q Consensus 171 ~~~~~~~~~ 179 (189)
++||+++++
T Consensus 234 ~~~ni~~~~ 242 (243)
T 3pl9_A 234 LHTTILDRF 242 (243)
T ss_dssp GGGSTTTTT
T ss_pred chhhhhhhc
Confidence 999999875
No 3
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1.9e-44 Score=304.84 Aligned_cols=161 Identities=42% Similarity=0.717 Sum_probs=122.3
Q ss_pred CChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccc-cccCCcccccccccchHH-HHHHHHHHH
Q 029740 11 NQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA-LLLDGNTLNYFGKNIPIN-LVFAVIAEI 88 (189)
Q Consensus 11 ~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~-~~~~~~~~~~~~~~~p~~-~~~a~~~qv 88 (189)
+|+++++||||+|||||||||||++|+++||.++.. .|++++. ..++++...|++.++|+. +...+++|+
T Consensus 75 ~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~--------~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~ 146 (241)
T 2wsc_1 75 EVPANLERYKESELIHCRWAMLAVPGILVPEALGYG--------NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEF 146 (241)
T ss_dssp TTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-------------CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCC--------ccccccchhccCCcchhhhcCcchHHHHHHHHHHHH
Confidence 478999999999999999999999999999998642 2443321 123344445665555433 223347888
Q ss_pred HHHhhhhhhhcccCcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHh-hhcCCcchhhhhhhh
Q 029740 89 VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHL 167 (189)
Q Consensus 89 ~~~g~~E~~~~~~g~~~~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~-~v~g~gpl~~l~~~~ 167 (189)
+++|++|.+|.... +.+++.||||.|||+|+.+|+++++++|.+|||||||||+|++|+++|+ .+||++|++||.+|+
T Consensus 147 l~ig~~E~~r~~~~-~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~ 225 (241)
T 2wsc_1 147 LAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225 (241)
T ss_dssp HHTHHHHHHHTSCC-SSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSC
T ss_pred HHHHHHHHHHHhcc-CCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHh
Confidence 88999999987653 3345679999999999999988888999999999999999999999999 589999999999999
Q ss_pred CCcccchhhhhhc
Q 029740 168 SDPFANNLLTVIS 180 (189)
Q Consensus 168 ~~P~~~~~~~~~~ 180 (189)
+||++||+.+++.
T Consensus 226 adP~~~n~~~~~~ 238 (241)
T 2wsc_1 226 ADPWHNNIGDIVI 238 (241)
T ss_dssp CCSCC--------
T ss_pred cCccccceeeeec
Confidence 9999999999874
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=2.4e-42 Score=296.79 Aligned_cols=165 Identities=42% Similarity=0.666 Sum_probs=108.7
Q ss_pred CChhhH------HHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCc-chhhhccccccCCcccccccccchHHHHHH
Q 029740 11 NQTTSA------SIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE-AVWFKTGALLLDGNTLNYFGKNIPINLVFA 83 (189)
Q Consensus 11 ~~~~~l------~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~-~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a 83 (189)
.|++++ +|+||+|||||||||||++|++++|+++..|...... ..|++.+.... .+..+|++++.. .
T Consensus 85 ~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~-aG~~~~~~~~~~-----l 158 (276)
T 2wsc_3 85 SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPP-AGTYNYWADSYT-----L 158 (276)
T ss_dssp CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC------CCCSCCCCS-----T
T ss_pred CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccc-hhHHHHhccchH-----H
Confidence 366777 9999999999999999999999999998776543211 24887655322 223456655422 2
Q ss_pred HHHHHHHHhhhhhhhccc----Cc--------------CCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHH
Q 029740 84 VIAEIVLVGGAEYYRITN----GL--------------DLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 144 (189)
Q Consensus 84 ~~~qv~~~g~~E~~~~~~----g~--------------~~~~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla 144 (189)
+++|++++|++|.+|+.+ |. ...+..|||| +||||||.+|+++++++|.+|||||||||+|
T Consensus 159 ~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla 238 (276)
T 2wsc_3 159 FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLA 238 (276)
T ss_dssp THHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHH
Confidence 367888899999987653 10 0124578999 6999999988888999999999999999999
Q ss_pred HHHHHHHhhhcCCcchhhhhhhhCCcccchhhhhhcc
Q 029740 145 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 181 (189)
Q Consensus 145 ~~G~i~q~~v~g~gpl~~l~~~~~~P~~~~~~~~~~~ 181 (189)
++|+++|+.+||++|++||.+|+++|++||+++++..
T Consensus 239 ~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 239 ILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp HHHHHSSCCCCSSCCSCC-------------------
T ss_pred HHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 9999999999999999999999999999999998753
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=4.6e-42 Score=291.90 Aligned_cols=157 Identities=38% Similarity=0.689 Sum_probs=120.9
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 84 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~ 84 (189)
|.++ +|+++++||||+|||||||||||++|++++|+++..|.... ..|+++|.. +|++.+.. .+
T Consensus 79 lGl~--~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~--p~w~~aG~~-------~~~~~~~~-----l~ 142 (251)
T 2wsc_4 79 LGLA--EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAGKE-------EYFASSST-----LF 142 (251)
T ss_dssp --CC--CSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCC--CCCSCCCSS-------SCSSCSSC-----TT
T ss_pred cccC--CChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCC--ccccccchH-------hhhccchH-----HH
Confidence 3454 58899999999999999999999999999999987765432 358876542 33333211 13
Q ss_pred HHHHHHHhhhhhhhccc----Cc-C----C-------CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHH
Q 029740 85 IAEIVLVGGAEYYRITN----GL-D----L-------EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 148 (189)
Q Consensus 85 ~~qv~~~g~~E~~~~~~----g~-~----~-------~~~~~PG~~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~ 148 (189)
++|++++|++|.+|+.+ |. . . .+..||||.||||++.+ ++++|++||||||| |+||+||
T Consensus 143 ~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf 217 (251)
T 2wsc_4 143 VIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGF 217 (251)
T ss_dssp TTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCccCccchhH----HHHHHHHHHhcchh-HHHHHHH
Confidence 56888899999987653 11 0 0 12358999999999976 45789999999999 9999999
Q ss_pred HHHhhhcCCcchhhhhhhhCCcccchhhhhhccc
Q 029740 149 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 182 (189)
Q Consensus 149 i~q~~v~g~gpl~~l~~~~~~P~~~~~~~~~~~~ 182 (189)
++|+.+||++|++||.+|++||++||+++++.+|
T Consensus 218 ~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 251 (251)
T 2wsc_4 218 IIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 251 (251)
T ss_dssp HHHHTTSCCCCCCCTTTTTTCCCCCCSCC-----
T ss_pred HHHHHhcCccHHHHHHHHccChhhhhhhhhhcCC
Confidence 9999999999999999999999999999998764
No 6
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.8e-42 Score=296.64 Aligned_cols=160 Identities=41% Similarity=0.686 Sum_probs=127.0
Q ss_pred EeeccCCChhhHHHHHHHHhhhhhhHHhhhhhhhhhhccccCCCCCCCcchhhhccccccCCcccccccccchHHHHHHH
Q 029740 5 LLVSARNQTTSASIYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 84 (189)
Q Consensus 5 ~~~~~~~~~~~l~~~REaELkHGRvAMLA~vG~lv~e~~~~~g~~~~p~~~w~~ag~~~~~~~~~~~~~~~~p~~~~~a~ 84 (189)
|.|+ +|+++++||||+|||||||||||++|++++|++++.|.... ..|+++|.. +|+.... ..+
T Consensus 90 lGL~--~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~--p~w~~aG~~-------~~~~~~~-----~l~ 153 (269)
T 2wsc_2 90 LGLG--SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNT--PSWYTAGEQ-------EYFTDTT-----TLF 153 (269)
T ss_dssp ------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSC--CCCCSTTSS-------SSCCCTT-----SHH
T ss_pred cccC--CCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccC--ccccccchh-------hhhcchH-----HHH
Confidence 3454 58899999999999999999999999999999988766533 348876532 2333321 123
Q ss_pred HHHHHHHhhhhhhhccc----Cc------------CCCCCCCCCC-CCCCCCCCC-ChHHHHHHHHHHHhchhhHHHHHH
Q 029740 85 IAEIVLVGGAEYYRITN----GL------------DLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAML 146 (189)
Q Consensus 85 ~~qv~~~g~~E~~~~~~----g~------------~~~~~~~PG~-~fDPlgl~~-d~~~~~~~~~~ElkNGRLAMla~~ 146 (189)
++|++++|++|.+|+.+ |. ...+..+||| +||||||.+ |+++++++|.+|||||||||+|++
T Consensus 154 ~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~ 233 (269)
T 2wsc_2 154 IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVM 233 (269)
T ss_dssp HHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHH
Confidence 67888899999987643 10 0124478999 699999975 677788999999999999999999
Q ss_pred HHHHHhhhcCCcchhhhh-hhhCCcccchhhhhhcc
Q 029740 147 GFFLQAYVTGEGPVENLA-KHLSDPFANNLLTVISG 181 (189)
Q Consensus 147 G~i~q~~v~g~gpl~~l~-~~~~~P~~~~~~~~~~~ 181 (189)
|+++|+.+||++|++||. +|++|| +||+++++..
T Consensus 234 g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 234 GAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp SSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred HHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 999999999999999999 999999 9999998753
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.54 E-value=5e-15 Score=124.42 Aligned_cols=50 Identities=28% Similarity=0.498 Sum_probs=46.5
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcC
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 156 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g 156 (189)
++..||| +||||||++|+++++++|+.||||||+||+|++|+++++.++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 5678999 8999999999999999999999999999999999999998753
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.46 E-value=3.2e-15 Score=126.86 Aligned_cols=54 Identities=39% Similarity=0.673 Sum_probs=38.9
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcch
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 160 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl 160 (189)
++.+||| +||||||.+|+++++++|.+||||||+||+|++|+++++++++.+.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 4568999 89999999999999999999999999999999999999999987765
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.46 E-value=4.7e-15 Score=126.90 Aligned_cols=54 Identities=35% Similarity=0.631 Sum_probs=35.8
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhcCCcch
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 160 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gpl 160 (189)
++..||| +||||||.+|+++++++|++||||||+||+|++|+++|+++++.+.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 4568999 89999999999999999999999999999999999999998866543
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.42 E-value=3.6e-14 Score=119.64 Aligned_cols=50 Identities=36% Similarity=0.532 Sum_probs=28.2
Q ss_pred CCCCCCC-CCCCCCCCCChHH-------------------------------------------HHHHHHHHHhchhhHH
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQ-------------------------------------------FALLKVKEIKNGRLAM 142 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~-------------------------------------------~~~~~~~ElkNGRLAM 142 (189)
|+..||| +||||||++++|. ++++|+.||+|||+||
T Consensus 25 dGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAM 104 (243)
T 3pl9_A 25 DGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAM 104 (243)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHH
Confidence 5568999 8999999998862 6899999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 029740 143 FAMLGFFLQAYVTG 156 (189)
Q Consensus 143 la~~G~i~q~~v~g 156 (189)
+|++|++++|.++|
T Consensus 105 LAvlG~lvpE~l~g 118 (243)
T 3pl9_A 105 LATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHhHHhhcC
Confidence 99999999999865
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.37 E-value=4.7e-14 Score=119.06 Aligned_cols=49 Identities=35% Similarity=0.565 Sum_probs=44.7
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHHHHHHhchhhHHHHHHHHHHHhhhc
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 155 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~~~~~~~ElkNGRLAMla~~G~i~q~~v~ 155 (189)
++..||| +|||+||.+|+++++++|++||||||+||+|++|+++|+.++
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 4568999 799999999999999999999999999999999999999864
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.24 E-value=1.6e-13 Score=117.78 Aligned_cols=52 Identities=40% Similarity=0.618 Sum_probs=34.6
Q ss_pred CCCCCCC-CCCCCCCCCChHHH------HHHHHHHHhchhhHHHHHHHHHHHhhhcCCcc
Q 029740 107 DKLHPGG-PFDPLGLAKDPDQF------ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 159 (189)
Q Consensus 107 ~~~~PG~-~fDPlgl~~d~~~~------~~~~~~ElkNGRLAMla~~G~i~q~~v~g~gp 159 (189)
++..||| +|||||| +|++++ +++|.+||+|||+||+|++|+++++++++.+.
T Consensus 70 ~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~ 128 (276)
T 2wsc_3 70 DGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGL 128 (276)
T ss_dssp ----------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCC
T ss_pred cCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccccc
Confidence 4568999 8999999 678888 89999999999999999999999999887653
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=73.40 E-value=1.9 Score=23.25 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHhhhh
Q 029740 13 TTSASIYQAYELIHA 27 (189)
Q Consensus 13 ~~~l~~~REaELkHG 27 (189)
++.+..+||||+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467899999999864
Done!