Query 029741
Match_columns 188
No_of_seqs 135 out of 1314
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02293 adenine phosphoribosy 100.0 1.5E-35 3.3E-40 231.0 21.9 184 1-184 1-186 (187)
2 KOG1712 Adenine phosphoribosyl 100.0 1.3E-35 2.8E-40 220.2 16.0 176 8-183 2-182 (183)
3 PRK02304 adenine phosphoribosy 100.0 2.4E-32 5.3E-37 211.4 20.0 172 13-184 2-175 (175)
4 TIGR01090 apt adenine phosphor 100.0 1.1E-29 2.4E-34 195.5 18.9 165 17-181 1-168 (169)
5 COG0503 Apt Adenine/guanine ph 100.0 2.1E-28 4.5E-33 189.8 18.9 171 13-183 4-178 (179)
6 PRK09219 xanthine phosphoribos 100.0 2.9E-28 6.3E-33 190.3 18.7 169 12-184 3-180 (189)
7 PRK12560 adenine phosphoribosy 100.0 1.1E-27 2.4E-32 187.0 19.4 168 13-184 2-178 (187)
8 TIGR01744 XPRTase xanthine pho 100.0 1.7E-27 3.6E-32 186.4 18.2 169 11-184 2-180 (191)
9 PRK13810 orotate phosphoribosy 100.0 4.8E-27 1E-31 183.1 16.9 143 30-186 41-186 (187)
10 TIGR01743 purR_Bsub pur operon 100.0 7E-27 1.5E-31 190.4 18.6 166 12-184 84-252 (268)
11 PRK09213 pur operon repressor; 100.0 1.1E-26 2.5E-31 189.6 18.4 166 12-184 86-254 (271)
12 PRK08558 adenine phosphoribosy 99.9 2.1E-25 4.6E-30 180.0 18.1 160 17-183 72-238 (238)
13 PRK13809 orotate phosphoribosy 99.9 1.8E-25 3.9E-30 176.7 16.8 146 30-187 35-183 (206)
14 PRK13812 orotate phosphoribosy 99.9 9.6E-25 2.1E-29 168.9 15.3 140 31-186 29-171 (176)
15 PRK13811 orotate phosphoribosy 99.9 2.1E-24 4.5E-29 166.2 15.7 139 31-187 28-169 (170)
16 PRK07322 adenine phosphoribosy 99.9 1.2E-23 2.6E-28 163.2 17.2 162 17-182 8-174 (178)
17 TIGR00336 pyrE orotate phospho 99.9 6.6E-24 1.4E-28 163.9 15.6 140 31-184 22-172 (173)
18 PRK00455 pyrE orotate phosphor 99.9 8.4E-24 1.8E-28 167.1 16.4 143 31-187 31-178 (202)
19 PRK02277 orotate phosphoribosy 99.9 2.4E-23 5.2E-28 164.2 17.9 148 28-184 49-198 (200)
20 TIGR01367 pyrE_Therm orotate p 99.9 3.2E-23 7E-28 161.8 17.8 138 30-184 24-164 (187)
21 PRK05500 bifunctional orotidin 99.9 7.9E-24 1.7E-28 184.9 15.9 142 31-186 313-457 (477)
22 COG0461 PyrE Orotate phosphori 99.9 5.4E-23 1.2E-27 160.7 16.6 159 13-185 6-175 (201)
23 PRK06031 phosphoribosyltransfe 99.9 1.2E-21 2.7E-26 157.3 15.7 162 16-183 41-219 (233)
24 PF00156 Pribosyltran: Phospho 99.8 5.9E-20 1.3E-24 133.7 10.9 122 39-162 2-125 (125)
25 COG0856 Orotate phosphoribosyl 99.8 1.7E-19 3.6E-24 136.1 13.3 143 30-183 51-198 (203)
26 PRK09162 hypoxanthine-guanine 99.8 2E-17 4.4E-22 128.6 15.4 139 40-186 15-158 (181)
27 TIGR01203 HGPRTase hypoxanthin 99.7 3.2E-16 6.9E-21 120.3 16.2 136 41-184 2-142 (166)
28 PLN02238 hypoxanthine phosphor 99.7 6.9E-16 1.5E-20 120.7 16.0 141 37-184 7-160 (189)
29 PRK15423 hypoxanthine phosphor 99.7 9.7E-16 2.1E-20 118.8 13.4 123 39-168 6-135 (178)
30 PRK09177 xanthine-guanine phos 99.7 1E-15 2.2E-20 116.4 12.9 115 41-170 9-124 (156)
31 PRK07199 phosphoribosylpyropho 99.7 1.1E-15 2.4E-20 127.5 14.2 111 62-184 160-272 (301)
32 PRK00934 ribose-phosphate pyro 99.7 2.7E-15 6E-20 124.3 14.0 110 62-184 154-265 (285)
33 COG0462 PrsA Phosphoribosylpyr 99.6 2.6E-15 5.5E-20 124.3 12.8 130 37-184 143-275 (314)
34 PRK02269 ribose-phosphate pyro 99.6 4.5E-15 9.9E-20 124.7 14.3 111 63-184 166-278 (320)
35 PRK08525 amidophosphoribosyltr 99.6 4.3E-15 9.4E-20 129.9 13.0 137 45-183 259-400 (445)
36 PRK05205 bifunctional pyrimidi 99.6 1.7E-14 3.8E-19 111.6 14.8 120 39-165 4-136 (176)
37 PTZ00271 hypoxanthine-guanine 99.6 3.1E-14 6.7E-19 112.9 15.7 125 37-168 23-161 (211)
38 PRK04923 ribose-phosphate pyro 99.6 1.4E-14 3.1E-19 121.6 14.2 110 62-184 166-278 (319)
39 COG1040 ComFC Predicted amidop 99.6 2E-15 4.3E-20 121.1 8.6 124 41-165 88-224 (225)
40 COG0634 Hpt Hypoxanthine-guani 99.6 2.3E-14 5E-19 109.0 13.5 123 37-168 7-136 (178)
41 TIGR00201 comF comF family pro 99.6 7.6E-15 1.6E-19 114.9 10.1 120 42-162 56-189 (190)
42 PRK03092 ribose-phosphate pyro 99.6 3.6E-14 7.9E-19 118.5 14.1 124 49-184 136-262 (304)
43 PRK01259 ribose-phosphate pyro 99.6 3.8E-14 8.1E-19 118.7 14.2 110 62-184 158-269 (309)
44 PRK00553 ribose-phosphate pyro 99.6 5.1E-14 1.1E-18 118.9 14.7 108 64-184 170-283 (332)
45 PRK02458 ribose-phosphate pyro 99.6 3.5E-14 7.6E-19 119.5 13.3 107 64-184 171-279 (323)
46 PTZ00149 hypoxanthine phosphor 99.6 3.9E-14 8.4E-19 114.3 12.7 122 36-167 52-192 (241)
47 PRK06827 phosphoribosylpyropho 99.6 6.8E-14 1.5E-18 119.7 14.6 115 62-184 207-328 (382)
48 PRK05793 amidophosphoribosyltr 99.6 2.9E-14 6.2E-19 125.5 12.3 119 45-164 272-392 (469)
49 PLN02440 amidophosphoribosyltr 99.6 2.4E-14 5.3E-19 126.2 11.7 118 45-163 259-378 (479)
50 PRK07349 amidophosphoribosyltr 99.6 2.2E-14 4.7E-19 126.6 11.3 117 45-162 296-414 (500)
51 PRK09123 amidophosphoribosyltr 99.5 7.9E-14 1.7E-18 122.8 12.8 115 45-160 279-395 (479)
52 COG2236 Predicted phosphoribos 99.5 3.5E-14 7.6E-19 110.7 9.2 115 40-161 5-123 (192)
53 PRK06781 amidophosphoribosyltr 99.5 3E-14 6.5E-19 125.1 9.5 117 45-163 267-386 (471)
54 TIGR01251 ribP_PPkin ribose-ph 99.5 2.7E-13 5.8E-18 113.6 13.7 111 62-184 159-271 (308)
55 TIGR01134 purF amidophosphorib 99.5 5.4E-14 1.2E-18 123.0 9.9 115 45-161 257-374 (442)
56 PRK07272 amidophosphoribosyltr 99.5 5.3E-14 1.1E-18 123.8 9.5 115 45-161 269-386 (484)
57 PRK08341 amidophosphoribosyltr 99.5 1.3E-13 2.8E-18 120.3 11.3 115 44-161 254-370 (442)
58 PRK09246 amidophosphoribosyltr 99.5 7.6E-14 1.7E-18 123.7 10.0 118 46-164 277-397 (501)
59 PRK06388 amidophosphoribosyltr 99.5 1.9E-13 4.1E-18 120.2 12.3 118 45-163 275-394 (474)
60 PRK02812 ribose-phosphate pyro 99.5 5E-13 1.1E-17 112.7 13.8 109 63-184 180-291 (330)
61 PLN02369 ribose-phosphate pyro 99.5 6.8E-13 1.5E-17 110.8 14.4 108 64-184 153-263 (302)
62 PTZ00145 phosphoribosylpyropho 99.5 5.5E-13 1.2E-17 115.4 13.7 109 63-184 280-396 (439)
63 PRK07847 amidophosphoribosyltr 99.5 2.6E-13 5.6E-18 120.1 11.8 117 45-162 286-404 (510)
64 PRK11595 DNA utilization prote 99.5 3.7E-13 8E-18 108.2 11.8 121 42-164 85-226 (227)
65 PRK07631 amidophosphoribosyltr 99.5 8.9E-14 1.9E-18 122.1 8.6 117 45-163 267-386 (475)
66 COG0034 PurF Glutamine phospho 99.5 8.9E-14 1.9E-18 119.3 7.8 117 45-162 267-385 (470)
67 PLN02297 ribose-phosphate pyro 99.5 9.6E-13 2.1E-17 110.5 12.7 106 63-184 184-297 (326)
68 PF14572 Pribosyl_synth: Phosp 99.4 7.3E-13 1.6E-17 102.3 9.3 119 64-184 5-144 (184)
69 PRK00129 upp uracil phosphorib 99.2 1E-10 2.2E-15 93.0 11.4 146 9-172 7-171 (209)
70 KOG1448 Ribose-phosphate pyrop 99.2 4E-11 8.6E-16 97.9 9.0 120 37-172 142-263 (316)
71 COG1926 Predicted phosphoribos 99.2 4.5E-10 9.8E-15 87.8 13.2 124 49-172 9-171 (220)
72 TIGR01091 upp uracil phosphori 99.2 2.2E-10 4.7E-15 90.9 11.3 145 10-172 6-169 (207)
73 KOG0572 Glutamine phosphoribos 99.2 6.2E-11 1.3E-15 99.7 6.9 116 45-161 275-392 (474)
74 COG2065 PyrR Pyrimidine operon 99.1 8.1E-10 1.8E-14 83.2 11.6 120 41-166 6-138 (179)
75 KOG3367 Hypoxanthine-guanine p 99.1 2.2E-09 4.8E-14 81.4 10.4 141 33-184 28-183 (216)
76 PF15609 PRTase_2: Phosphoribo 99.0 1.5E-08 3.3E-13 78.6 13.0 155 28-184 14-189 (191)
77 PLN02541 uracil phosphoribosyl 98.4 9.6E-06 2.1E-10 65.9 12.6 49 124-172 156-206 (244)
78 COG0035 Upp Uracil phosphoribo 98.2 1.2E-05 2.6E-10 63.4 8.8 101 65-178 73-182 (210)
79 PF14681 UPRTase: Uracil phosp 98.2 5.7E-05 1.2E-09 59.9 12.5 96 64-172 69-170 (207)
80 KOG1503 Phosphoribosylpyrophos 98.0 0.0002 4.3E-09 57.7 12.2 141 37-183 146-307 (354)
81 PF15610 PRTase_3: PRTase ComF 96.2 0.1 2.2E-06 42.9 10.9 39 123-161 136-174 (274)
82 KOG1017 Predicted uracil phosp 93.9 0.35 7.6E-06 38.2 7.3 63 120-182 184-249 (267)
83 PF13793 Pribosyltran_N: N-ter 93.8 1.8 3.8E-05 31.1 10.6 76 71-160 7-86 (116)
84 KOG1377 Uridine 5'- monophosph 92.5 0.72 1.5E-05 37.5 7.3 145 30-184 61-225 (261)
85 PRK02812 ribose-phosphate pyro 91.5 3.7 8E-05 34.9 11.0 83 66-162 23-109 (330)
86 PTZ00145 phosphoribosylpyropho 90.7 4.5 9.8E-05 35.8 11.0 84 65-162 120-207 (439)
87 PRK07199 phosphoribosylpyropho 90.0 6.5 0.00014 33.0 11.1 78 71-162 9-89 (301)
88 PRK04923 ribose-phosphate pyro 89.7 4.2 9.1E-05 34.4 9.8 78 70-161 12-93 (319)
89 PRK00553 ribose-phosphate pyro 89.6 7 0.00015 33.3 11.1 83 66-162 11-97 (332)
90 PRK01259 ribose-phosphate pyro 89.6 6.3 0.00014 33.2 10.8 78 71-162 7-88 (309)
91 TIGR01251 ribP_PPkin ribose-ph 89.3 4.2 9.2E-05 34.1 9.5 78 71-162 7-89 (308)
92 PRK02269 ribose-phosphate pyro 88.9 8.4 0.00018 32.6 11.1 79 70-162 11-93 (320)
93 PRK00934 ribose-phosphate pyro 88.8 6.3 0.00014 32.7 10.1 77 71-161 6-85 (285)
94 PLN02369 ribose-phosphate pyro 88.5 5.6 0.00012 33.4 9.7 74 75-162 2-79 (302)
95 PRK03092 ribose-phosphate pyro 86.7 7.2 0.00016 32.8 9.3 73 76-162 1-77 (304)
96 PRK02458 ribose-phosphate pyro 86.0 17 0.00038 30.8 11.3 83 66-162 11-97 (323)
97 COG0462 PrsA Phosphoribosylpyr 83.8 8.6 0.00019 32.5 8.3 78 71-162 11-92 (314)
98 PRK06827 phosphoribosylpyropho 78.0 44 0.00096 29.1 11.0 41 121-162 73-131 (382)
99 PLN02297 ribose-phosphate pyro 72.3 61 0.0013 27.6 11.2 85 65-162 17-105 (326)
100 PF04392 ABC_sub_bind: ABC tra 63.9 49 0.0011 27.1 8.0 138 10-157 9-165 (294)
101 COG3535 Uncharacterized conser 63.2 98 0.0021 26.6 11.0 102 43-157 77-188 (357)
102 KOG0743 AAA+-type ATPase [Post 62.5 40 0.00086 30.1 7.3 120 26-164 193-348 (457)
103 PRK12342 hypothetical protein; 60.4 33 0.00071 28.1 6.2 43 48-90 95-141 (254)
104 COG1537 PelA Predicted RNA-bin 57.3 36 0.00078 29.3 6.0 57 124-182 288-349 (352)
105 cd00158 RHOD Rhodanese Homolog 56.4 28 0.00061 22.2 4.4 32 123-157 48-79 (89)
106 PRK03359 putative electron tra 55.8 28 0.00061 28.5 5.1 43 48-90 98-144 (256)
107 smart00450 RHOD Rhodanese Homo 55.4 26 0.00057 22.7 4.2 32 123-157 54-85 (100)
108 cd01529 4RHOD_Repeats Member o 55.2 25 0.00054 23.4 4.1 32 123-157 54-85 (96)
109 PF11382 DUF3186: Protein of u 53.3 43 0.00094 28.1 5.9 43 123-165 81-123 (308)
110 cd01715 ETF_alpha The electron 51.5 43 0.00094 25.1 5.2 43 48-90 69-112 (168)
111 COG2984 ABC-type uncharacteriz 50.8 1.6E+02 0.0034 25.1 11.7 75 10-92 40-116 (322)
112 cd01444 GlpE_ST GlpE sulfurtra 50.1 30 0.00066 22.7 3.8 32 123-157 54-85 (96)
113 cd01714 ETF_beta The electron 49.9 41 0.00089 26.3 5.0 42 48-89 94-139 (202)
114 PF12646 DUF3783: Domain of un 49.8 48 0.001 20.5 4.4 37 127-165 2-38 (58)
115 PRK04195 replication factor C 48.3 2E+02 0.0043 25.6 10.1 111 37-154 13-132 (482)
116 PRK04940 hypothetical protein; 45.7 1.4E+02 0.0031 23.1 7.8 49 42-91 37-88 (180)
117 COG0371 GldA Glycerol dehydrog 45.2 51 0.0011 28.5 5.2 33 61-93 83-116 (360)
118 cd01985 ETF The electron trans 42.1 61 0.0013 24.5 4.8 42 48-89 77-119 (181)
119 PF02875 Mur_ligase_C: Mur lig 40.8 47 0.001 22.0 3.6 36 126-161 12-49 (91)
120 TIGR03492 conserved hypothetic 39.9 68 0.0015 27.8 5.3 61 26-90 54-118 (396)
121 COG0052 RpsB Ribosomal protein 39.7 1.1E+02 0.0024 25.1 6.1 30 63-92 157-186 (252)
122 PF04723 GRDA: Glycine reducta 39.4 72 0.0016 23.8 4.5 36 123-160 3-38 (150)
123 PF07931 CPT: Chloramphenicol 39.2 36 0.00079 26.1 3.1 39 124-165 82-121 (174)
124 TIGR01809 Shik-DH-AROM shikima 39.1 67 0.0015 26.4 4.9 33 123-159 123-155 (282)
125 TIGR00111 pelota probable tran 38.1 92 0.002 26.7 5.7 57 124-182 293-349 (351)
126 PF05728 UPF0227: Uncharacteri 38.0 1.1E+02 0.0024 23.6 5.8 48 42-91 40-87 (187)
127 cd01518 RHOD_YceA Member of th 38.0 79 0.0017 21.1 4.5 32 123-157 59-90 (101)
128 COG0784 CheY FOG: CheY-like re 37.8 95 0.0021 21.1 5.0 26 124-152 4-29 (130)
129 PF01012 ETF: Electron transfe 36.4 39 0.00085 25.1 2.9 42 49-90 77-119 (164)
130 PRK01021 lpxB lipid-A-disaccha 36.2 1.1E+02 0.0025 28.4 6.2 46 45-90 293-341 (608)
131 PF01488 Shikimate_DH: Shikima 36.0 53 0.0011 23.7 3.5 37 123-166 10-46 (135)
132 PF03681 UPF0150: Uncharacteri 35.3 15 0.00033 21.5 0.4 19 133-151 23-41 (48)
133 PRK05329 anaerobic glycerol-3- 34.8 95 0.0021 27.3 5.4 58 33-92 189-250 (422)
134 TIGR00215 lpxB lipid-A-disacch 34.8 1.2E+02 0.0026 26.1 6.0 43 49-91 76-119 (385)
135 TIGR03450 mycothiol_INO1 inosi 33.9 2.4E+02 0.0052 24.3 7.4 96 53-164 114-216 (351)
136 TIGR01426 MGT glycosyltransfer 33.6 1.5E+02 0.0033 25.1 6.4 36 54-91 84-119 (392)
137 cd08177 MAR Maleylacetate redu 33.4 1.3E+02 0.0028 25.4 5.9 46 49-94 64-110 (337)
138 cd08172 GlyDH-like1 Glycerol d 33.2 1.3E+02 0.0027 25.5 5.8 44 51-94 65-109 (347)
139 cd08173 Gro1PDH Sn-glycerol-1- 33.2 1.2E+02 0.0027 25.5 5.8 46 49-94 65-111 (339)
140 COG2086 FixA Electron transfer 33.0 2E+02 0.0044 23.7 6.7 43 48-90 97-143 (260)
141 PRK13584 hisG ATP phosphoribos 32.1 20 0.00044 28.4 0.7 21 131-158 148-168 (204)
142 cd01519 RHOD_HSP67B2 Member of 32.0 96 0.0021 20.7 4.1 33 123-158 64-96 (106)
143 cd08171 GlyDH-like2 Glycerol d 31.5 1.5E+02 0.0033 25.0 6.0 46 49-94 65-111 (345)
144 PF13685 Fe-ADH_2: Iron-contai 31.4 50 0.0011 27.0 2.9 42 54-95 67-109 (250)
145 COG0588 GpmA Phosphoglycerate 31.2 54 0.0012 26.4 3.0 27 122-152 171-197 (230)
146 cd07766 DHQ_Fe-ADH Dehydroquin 30.9 1.4E+02 0.003 24.9 5.6 44 51-94 67-113 (332)
147 PRK01686 hisG ATP phosphoribos 30.4 24 0.00051 28.2 0.8 20 131-157 158-177 (215)
148 PRK09423 gldA glycerol dehydro 30.4 1.5E+02 0.0032 25.3 5.8 46 49-94 71-117 (366)
149 cd01532 4RHOD_Repeat_1 Member 30.1 90 0.002 20.6 3.6 31 124-157 49-81 (92)
150 cd08170 GlyDH Glycerol dehydro 30.0 1.5E+02 0.0033 25.0 5.8 46 49-94 64-110 (351)
151 cd08550 GlyDH-like Glycerol_de 29.8 1.3E+02 0.0027 25.6 5.2 45 50-94 65-110 (349)
152 cd06328 PBP1_SBP_like_2 Peripl 29.8 2.9E+02 0.0064 22.7 7.4 118 41-161 50-173 (333)
153 PF02684 LpxB: Lipid-A-disacch 29.7 1.1E+02 0.0024 26.6 4.9 46 45-90 65-113 (373)
154 cd01528 RHOD_2 Member of the R 29.4 1.2E+02 0.0027 20.1 4.3 31 124-157 57-87 (101)
155 COG2099 CobK Precorrin-6x redu 29.3 3.3E+02 0.0071 22.5 7.5 42 51-92 55-100 (257)
156 PF01634 HisG: ATP phosphoribo 29.2 24 0.00053 26.9 0.7 20 131-157 110-129 (163)
157 TIGR00236 wecB UDP-N-acetylglu 29.2 2.2E+02 0.0048 23.8 6.6 44 48-91 72-116 (365)
158 PF03129 HGTP_anticodon: Antic 28.9 1.7E+02 0.0037 19.1 6.1 48 45-92 12-59 (94)
159 PRK13265 glycine/sarcosine/bet 28.8 1.2E+02 0.0026 22.6 4.2 37 123-161 4-40 (154)
160 cd03786 GT1_UDP-GlcNAc_2-Epime 28.5 2.2E+02 0.0049 23.4 6.6 45 47-91 73-118 (363)
161 PRK11024 colicin uptake protei 28.5 1.9E+02 0.0042 21.0 5.4 36 124-159 102-137 (141)
162 TIGR01133 murG undecaprenyldip 28.3 1.8E+02 0.004 23.7 6.0 39 52-90 80-118 (348)
163 PRK13583 hisG ATP phosphoribos 28.2 27 0.00058 28.2 0.8 19 131-156 175-193 (228)
164 cd01524 RHOD_Pyr_redox Member 27.9 1.5E+02 0.0033 19.2 4.5 28 123-153 49-76 (90)
165 PF01555 N6_N4_Mtase: DNA meth 27.8 46 0.001 25.5 2.1 20 128-147 193-212 (231)
166 cd06367 PBP1_iGluR_NMDA N-term 27.5 1E+02 0.0022 25.7 4.3 46 42-90 46-95 (362)
167 cd01525 RHOD_Kc Member of the 27.5 1.2E+02 0.0025 20.3 3.9 31 124-157 64-94 (105)
168 COG0129 IlvD Dihydroxyacid deh 27.5 1.9E+02 0.0041 26.7 6.1 80 12-91 63-151 (575)
169 PRK00843 egsA NAD(P)-dependent 27.5 1.8E+02 0.0039 24.7 5.8 46 49-94 74-120 (350)
170 PRK11267 biopolymer transport 27.4 2E+02 0.0044 21.0 5.4 37 124-160 98-134 (141)
171 PF07728 AAA_5: AAA domain (dy 27.2 2E+02 0.0043 20.2 5.3 85 65-151 3-91 (139)
172 PF05209 MinC_N: Septum format 27.2 36 0.00077 23.4 1.2 43 11-54 26-68 (99)
173 TIGR02801 tolR TolR protein. T 27.0 2.1E+02 0.0046 20.3 5.3 36 124-159 92-127 (129)
174 PRK13978 ribose-5-phosphate is 26.8 2.1E+02 0.0045 23.1 5.7 48 41-91 27-74 (228)
175 COG0120 RpiA Ribose 5-phosphat 26.8 59 0.0013 26.3 2.5 47 135-183 26-76 (227)
176 cd01449 TST_Repeat_2 Thiosulfa 26.5 1.4E+02 0.003 20.4 4.3 32 123-157 76-107 (118)
177 cd01534 4RHOD_Repeat_3 Member 26.4 1.7E+02 0.0037 19.2 4.5 28 124-154 55-82 (95)
178 TIGR00070 hisG ATP phosphoribo 26.2 31 0.00067 26.8 0.8 20 131-157 152-171 (182)
179 COG0353 RecR Recombinational D 26.2 59 0.0013 25.6 2.4 53 8-60 1-53 (198)
180 cd01447 Polysulfide_ST Polysul 25.9 83 0.0018 20.8 2.9 32 123-157 59-90 (103)
181 PF10865 DUF2703: Domain of un 25.8 78 0.0017 22.9 2.8 49 133-181 17-77 (120)
182 TIGR03568 NeuC_NnaA UDP-N-acet 25.6 2.5E+02 0.0055 23.9 6.4 48 45-92 76-124 (365)
183 PRK10618 phosphotransfer inter 25.6 2.7E+02 0.0059 27.1 7.2 33 123-158 687-719 (894)
184 PRK04596 minC septum formation 25.5 1.7E+02 0.0037 24.0 5.0 73 12-90 32-106 (248)
185 PF06032 DUF917: Protein of un 25.3 97 0.0021 26.7 3.7 42 49-91 79-122 (353)
186 PF00910 RNA_helicase: RNA hel 25.3 77 0.0017 21.7 2.7 29 123-151 47-80 (107)
187 PF02350 Epimerase_2: UDP-N-ac 25.0 1.7E+02 0.0037 24.9 5.2 58 33-91 39-97 (346)
188 KOG0081 GTPase Rab27, small G 24.4 3.2E+02 0.007 21.1 6.0 56 34-90 97-160 (219)
189 cd06336 PBP1_ABC_ligand_bindin 24.4 3.1E+02 0.0068 22.6 6.7 47 41-90 53-99 (347)
190 PF13189 Cytidylate_kin2: Cyti 24.3 61 0.0013 24.6 2.1 21 70-90 9-29 (179)
191 PRK08057 cobalt-precorrin-6x r 24.0 1.9E+02 0.0041 23.5 5.0 35 59-93 187-223 (248)
192 cd01523 RHOD_Lact_B Member of 23.5 2E+02 0.0043 19.0 4.5 29 123-154 59-87 (100)
193 PF02776 TPP_enzyme_N: Thiamin 23.5 1.7E+02 0.0036 21.9 4.4 40 51-90 4-44 (172)
194 COG0533 QRI7 Metal-dependent p 23.3 3.1E+02 0.0068 23.6 6.3 73 8-91 23-108 (342)
195 PF13528 Glyco_trans_1_3: Glyc 23.2 3E+02 0.0066 22.2 6.3 41 48-91 80-120 (318)
196 cd06346 PBP1_ABC_ligand_bindin 22.8 3.4E+02 0.0074 22.0 6.5 47 41-90 49-97 (312)
197 PRK00676 hemA glutamyl-tRNA re 22.7 1.9E+02 0.0042 24.8 5.0 36 123-165 172-207 (338)
198 PF13207 AAA_17: AAA domain; P 22.7 1.5E+02 0.0033 20.2 3.8 27 65-91 3-30 (121)
199 PRK00258 aroE shikimate 5-dehy 22.7 2E+02 0.0044 23.4 5.1 31 123-157 121-151 (278)
200 TIGR02803 ExbD_1 TonB system t 22.5 2.8E+02 0.0061 19.5 5.4 37 125-161 85-121 (122)
201 cd08551 Fe-ADH iron-containing 22.5 2.6E+02 0.0056 23.8 5.9 35 50-84 68-103 (370)
202 TIGR03378 glycerol3P_GlpB glyc 22.3 1.8E+02 0.0039 25.7 4.9 56 34-91 194-253 (419)
203 cd07039 TPP_PYR_POX Pyrimidine 22.3 2.2E+02 0.0048 21.2 4.9 23 51-73 3-25 (164)
204 PF00595 PDZ: PDZ domain (Also 22.3 2.2E+02 0.0047 18.0 4.3 32 122-153 43-74 (81)
205 PF03465 eRF1_3: eRF1 domain 3 22.1 83 0.0018 22.2 2.3 33 126-158 39-88 (113)
206 COG4825 Uncharacterized membra 21.8 1.9E+02 0.0042 24.5 4.7 39 122-160 177-215 (395)
207 PRK14027 quinate/shikimate deh 21.7 1.7E+02 0.0038 24.1 4.5 33 123-159 125-157 (283)
208 PRK13947 shikimate kinase; Pro 21.7 1.1E+02 0.0023 22.5 3.0 26 65-90 5-31 (171)
209 TIGR00150 HI0065_YjeE ATPase, 21.6 2.8E+02 0.006 20.3 5.1 46 42-87 3-49 (133)
210 PF00289 CPSase_L_chain: Carba 21.2 2E+02 0.0043 20.2 4.1 27 134-160 7-33 (110)
211 PRK08154 anaerobic benzoate ca 21.1 2.4E+02 0.0052 23.5 5.3 27 65-91 137-164 (309)
212 cd06351 PBP1_iGluR_N_LIVBP_lik 20.9 1.3E+02 0.0029 24.2 3.7 47 42-91 46-93 (328)
213 COG0040 HisG ATP phosphoribosy 20.9 51 0.0011 27.6 1.1 20 131-157 159-178 (290)
214 COG4565 CitB Response regulato 20.8 1.7E+02 0.0037 23.5 4.0 24 127-151 48-71 (224)
215 PRK13978 ribose-5-phosphate is 20.8 96 0.0021 25.0 2.7 18 135-152 27-44 (228)
216 cd03784 GT1_Gtf_like This fami 20.7 2.9E+02 0.0063 23.3 5.9 35 55-91 97-131 (401)
217 PF13604 AAA_30: AAA domain; P 20.6 4E+02 0.0086 20.4 8.2 35 123-157 91-126 (196)
218 COG0562 Glf UDP-galactopyranos 20.6 1.3E+02 0.0027 26.0 3.4 37 65-102 5-41 (374)
219 PLN02384 ribose-5-phosphate is 20.5 99 0.0021 25.6 2.7 48 134-183 54-107 (264)
220 PF13177 DNA_pol3_delta2: DNA 20.5 3.1E+02 0.0066 20.3 5.3 42 123-164 100-142 (162)
221 cd01522 RHOD_1 Member of the R 20.5 2E+02 0.0042 20.0 4.0 31 124-157 63-93 (117)
222 PRK12749 quinate/shikimate deh 20.4 2E+02 0.0043 23.8 4.6 33 123-159 122-154 (288)
223 PF02153 PDH: Prephenate dehyd 20.4 2.9E+02 0.0063 22.2 5.5 37 121-157 119-155 (258)
224 cd08175 G1PDH Glycerol-1-phosp 20.1 2.8E+02 0.006 23.4 5.5 42 52-94 71-113 (348)
225 PF00185 OTCace: Aspartate/orn 20.0 2.6E+02 0.0057 20.8 4.8 37 124-163 1-37 (158)
No 1
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=1.5e-35 Score=231.03 Aligned_cols=184 Identities=84% Similarity=1.331 Sum_probs=167.7
Q ss_pred CccccCCCCCChhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHH
Q 029741 1 MFAAENGLRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSI 80 (188)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~l 80 (188)
|+.-.++=.+||++++|.+.+|+.|+||.+|+.|+|+..++.+|+.++.+++.+++++.+.++|+|++++.+|+++|..+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~l 80 (187)
T PLN02293 1 MFAMENGDQGDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPI 80 (187)
T ss_pred CCccccccCCChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHH
Confidence 67777888999999999999999999999999999999999999999999999999998878999999999999999999
Q ss_pred HHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEE
Q 029741 81 ALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (188)
Q Consensus 81 A~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~ 160 (188)
|..|++|++++||.++.++.+.+..+..+++++.+++..+.+.+|++|+||||+++||+|+.++++.++++|++++++++
T Consensus 81 A~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~ 160 (187)
T PLN02293 81 ALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECAC 160 (187)
T ss_pred HHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999998887777666666666766667766566668999999999999999999999999999999999999
Q ss_pred EeeChh--hhhccCCCCeEEEEeccc
Q 029741 161 VVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 161 l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
+++.++ +++++.+.++++|+++++
T Consensus 161 ~~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (187)
T PLN02293 161 VIELPELKGREKLNGKPLFVLVESRG 186 (187)
T ss_pred EEEcCCccHHHHhcCCceEEEEecCC
Confidence 999877 888898999999998764
No 2
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=220.24 Aligned_cols=176 Identities=70% Similarity=1.175 Sum_probs=168.9
Q ss_pred CCCChhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhc---CCCcEEEEeCCCChhhHHHHHHHh
Q 029741 8 LRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAI 84 (188)
Q Consensus 8 ~~~~~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~---~~~d~Iv~v~~gG~~~a~~lA~~l 84 (188)
..++|.++.|.+.+|..|+||++|++|.|+..++.||..++.+++.++.++++ .++|+|+|++.+|+.++..+|.++
T Consensus 2 ~~~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlal 81 (183)
T KOG1712|consen 2 LIADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALAL 81 (183)
T ss_pred ccccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHh
Confidence 45789999999999999999999999999999999999999999999999987 469999999999999999999999
Q ss_pred CCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeC
Q 029741 85 GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 85 ~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~ 164 (188)
|++++.+||..|.++++++.+|..+|+...+++.++.+.+|++|+||||++.||+|+.++.+++.+.|++++.+++++..
T Consensus 82 G~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL 161 (183)
T KOG1712|consen 82 GAGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIEL 161 (183)
T ss_pred CCCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEc
Confidence 99999999999999999999999999999999998988899999999999999999999999999999999999999999
Q ss_pred hh--hhhccCCCCeEEEEecc
Q 029741 165 PE--GQRRLDGKPLYILVEPR 183 (188)
Q Consensus 165 ~~--~~~~l~~~~~~~l~~~~ 183 (188)
++ ++++|.+.|+++|++..
T Consensus 162 ~~LkGr~kL~~~pl~~Ll~~~ 182 (183)
T KOG1712|consen 162 PELKGREKLKGKPLFSLLEYQ 182 (183)
T ss_pred cccCCccccCCCccEEEeecC
Confidence 88 99999999999999864
No 3
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.4e-32 Score=211.36 Aligned_cols=172 Identities=55% Similarity=0.986 Sum_probs=149.8
Q ss_pred hHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEe
Q 029741 13 RLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (188)
Q Consensus 13 ~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~ 92 (188)
||++|.++.|.+|.||.++..|.|+.+++.+|+.++.+++.+++++.+.++|+|+|++.+|+++|..+|..+++|+.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~r 81 (175)
T PRK02304 2 MLEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVR 81 (175)
T ss_pred hHHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEE
Confidence 78999999999999999999999999999999999999999999998778999999999999999999999999999888
Q ss_pred ecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhc
Q 029741 93 KPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRR 170 (188)
Q Consensus 93 k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~ 170 (188)
|..+.+.......++.+++.+.+.+..+...+|++||||||++|||+|+.++++.|+++|++++++++++++++ +.++
T Consensus 82 k~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~ 161 (175)
T PRK02304 82 KPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREK 161 (175)
T ss_pred cCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhh
Confidence 77654443333334433444556654444579999999999999999999999999999999999999999987 6788
Q ss_pred cCCCCeEEEEeccc
Q 029741 171 LDGKPLYILVEPRL 184 (188)
Q Consensus 171 l~~~~~~~l~~~~~ 184 (188)
+.|+|++||++++.
T Consensus 162 l~~~~~~sl~~~~~ 175 (175)
T PRK02304 162 LEGYPVKSLVKFDG 175 (175)
T ss_pred cCCCceEEEEEeCC
Confidence 88999999999863
No 4
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.97 E-value=1.1e-29 Score=195.52 Aligned_cols=165 Identities=49% Similarity=0.928 Sum_probs=139.9
Q ss_pred HhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCC
Q 029741 17 ISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK 96 (188)
Q Consensus 17 ~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~ 96 (188)
|.++++..|+||.+|+.|.|++.++.+|+.++.+++.+++++.+.++|+|+|++.+|+++|..+|..|++|+..++|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45789999999999999999999999999999999999999988789999999999999999999999999988877655
Q ss_pred CCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCC-
Q 029741 97 LPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDG- 173 (188)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~- 173 (188)
.........++.+++.+.+.+......+|++|||||||+|||+|+.++++.|+++|++++++++++++.+ +.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~ 160 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN 160 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC
Confidence 4444333334434444455554334469999999999999999999999999999999999999999864 6777753
Q ss_pred CCeEEEEe
Q 029741 174 KPLYILVE 181 (188)
Q Consensus 174 ~~~~~l~~ 181 (188)
+|+++|++
T Consensus 161 ~~~~sl~~ 168 (169)
T TIGR01090 161 VPVFSLLE 168 (169)
T ss_pred CceEEEEe
Confidence 89999985
No 5
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.1e-28 Score=189.80 Aligned_cols=171 Identities=46% Similarity=0.803 Sum_probs=154.2
Q ss_pred hHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEe
Q 029741 13 RLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (188)
Q Consensus 13 ~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~ 92 (188)
.++.|.+.+|..|.||.+|++|.|....+.++......++.+++++.+.++|.|++++.+|+++|..+|..||+|++.+|
T Consensus 4 ~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 4 LMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 57889999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhc
Q 029741 93 KPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRR 170 (188)
Q Consensus 93 k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~ 170 (188)
|.++.+.......+..+++...++++.+.+.+|++||||||++.||+|+.++.++++++|+++++++++++.++ ++.+
T Consensus 84 K~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~~ 163 (179)
T COG0503 84 KKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRKK 163 (179)
T ss_pred ecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccchh
Confidence 98888777666667777766778888777779999999999999999999999999999999999999999987 5555
Q ss_pred cC--CCCeEEEEecc
Q 029741 171 LD--GKPLYILVEPR 183 (188)
Q Consensus 171 l~--~~~~~~l~~~~ 183 (188)
+. +.++++|..+.
T Consensus 164 l~~~~~~v~~l~~~~ 178 (179)
T COG0503 164 LEDDGLPVFSLVRIV 178 (179)
T ss_pred hccCCceEEEEEecc
Confidence 55 47888887653
No 6
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.96 E-value=2.9e-28 Score=190.31 Aligned_cols=169 Identities=25% Similarity=0.356 Sum_probs=140.0
Q ss_pred hhHHHHhhcccccCCCCCCCceEEe-chhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE
Q 029741 12 PRLQGISKAIRVVPDFPIPGIMFQD-ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 12 ~~~~~~~~~~r~~~~~~~~g~~~~d-~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~ 90 (188)
++.+++.+.-|.+|+ |++|++ +.++..||+.++.+++.+++++.+.++|+|+|++.+|+++|..+|.+|++|+++
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~ 78 (189)
T PRK09219 3 LLEERILKDGKVLSG----NILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVF 78 (189)
T ss_pred HHHHHHhcCCEEcCC----CEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 577888899999999 877744 445559999999999999999988889999999999999999999999999999
Q ss_pred EeecCCCC--Ccccchh-eeeec-cceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh
Q 029741 91 LRKPNKLP--GEVISEA-YVLEY-GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (188)
Q Consensus 91 ~~k~~~~~--~~~~~~~-~~~~~-~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~ 166 (188)
+||..+.+ +...... ++... ....++++.+.+.+|++||||||+++||+|+.+++++++++|++++++++++++.+
T Consensus 79 vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~ 158 (189)
T PRK09219 79 AKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSF 158 (189)
T ss_pred EEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccC
Confidence 99887653 2322211 11111 22356666666679999999999999999999999999999999999999999863
Q ss_pred --hhhccC--CCCeEEEEeccc
Q 029741 167 --GQRRLD--GKPLYILVEPRL 184 (188)
Q Consensus 167 --~~~~l~--~~~~~~l~~~~~ 184 (188)
+++++. |+|+++|+++++
T Consensus 159 ~~g~~~l~~~g~~~~sl~~~~~ 180 (189)
T PRK09219 159 QDGRKLLEEKGYRVESLARIAS 180 (189)
T ss_pred ccHHHHHHhcCCcEEEEEEeee
Confidence 677764 899999999986
No 7
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=187.00 Aligned_cols=168 Identities=27% Similarity=0.374 Sum_probs=137.9
Q ss_pred hHHHHhhcccccCCCCCCCc--eEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE
Q 029741 13 RLQGISKAIRVVPDFPIPGI--MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 13 ~~~~~~~~~r~~~~~~~~g~--~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~ 90 (188)
.++++...+|+++++|.+|+ .|.|+..++. |..++.+++.+++.+ +.++|+|+|++.+|+++|..+|..+++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~ 79 (187)
T PRK12560 2 LLKNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAM 79 (187)
T ss_pred hhHHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEE
Confidence 36778889999999999998 8999999999 999999999999988 6689999999999999999999999999999
Q ss_pred EeecCCCCCcccchheeeeccceeEE--EecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--
Q 029741 91 LRKPNKLPGEVISEAYVLEYGTDRLE--MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-- 166 (188)
Q Consensus 91 ~~k~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-- 166 (188)
++|.+........ ....+++..++ +..+...+|++||||||+++||+|+.++++.++++|+.++++++++++.+
T Consensus 80 ~rk~~~~~~~~~~--~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~ 157 (187)
T PRK12560 80 ARWYPYSLSELNY--NVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNN 157 (187)
T ss_pred eccCCCcccceeE--EeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccc
Confidence 8876532211100 00112222222 22234568999999999999999999999999999999999999999975
Q ss_pred hhhcc---CCCCeEEEEeccc
Q 029741 167 GQRRL---DGKPLYILVEPRL 184 (188)
Q Consensus 167 ~~~~l---~~~~~~~l~~~~~ 184 (188)
+++.+ .|+|++||+++++
T Consensus 158 g~~~l~~~~gv~v~sl~~~~~ 178 (187)
T PRK12560 158 GRKKLFTQTGINVKSLVKIDV 178 (187)
T ss_pred hHHHHhhccCCcEEEEEEEEE
Confidence 56666 4999999999886
No 8
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.96 E-value=1.7e-27 Score=186.36 Aligned_cols=169 Identities=24% Similarity=0.332 Sum_probs=139.2
Q ss_pred ChhHHHHhhcccccCCCCCCCceEEe-chhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeE
Q 029741 11 DPRLQGISKAIRVVPDFPIPGIMFQD-ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFV 89 (188)
Q Consensus 11 ~~~~~~~~~~~r~~~~~~~~g~~~~d-~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~ 89 (188)
+++.+.|.+.-|.+|+ |+++.| ..+...||+.++.+++.+++++.+.++|+|++++.+|+++|..+|.+|++|++
T Consensus 2 ~~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678889999999999 877765 33334799999999999999998878999999999999999999999999999
Q ss_pred EEeecCCCCC--cccch---heeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeC
Q 029741 90 PLRKPNKLPG--EVISE---AYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 90 ~~~k~~~~~~--~~~~~---~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~ 164 (188)
++||..+.+. ..+.. ++.. ++...+.++.+.+.+|++||||||+++||+|+.++++.++++||+++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~ 156 (191)
T TIGR01744 78 FARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEK 156 (191)
T ss_pred EEEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEe
Confidence 9998765432 11111 1111 2334566665556699999999999999999999999999999999999999998
Q ss_pred hh--hhhccC--CCCeEEEEeccc
Q 029741 165 PE--GQRRLD--GKPLYILVEPRL 184 (188)
Q Consensus 165 ~~--~~~~l~--~~~~~~l~~~~~ 184 (188)
.+ +++.|. |+|++||+++++
T Consensus 157 ~~~~g~~~l~~~gvpv~sL~~~~~ 180 (191)
T TIGR01744 157 SFQNGRQELVELGYRVESLARIQS 180 (191)
T ss_pred cCccHHHHHHhcCCcEEEEEEEee
Confidence 73 777774 899999999986
No 9
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=4.8e-27 Score=183.15 Aligned_cols=143 Identities=26% Similarity=0.397 Sum_probs=126.6
Q ss_pred CCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeee
Q 029741 30 PGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLE 109 (188)
Q Consensus 30 ~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~ 109 (188)
++..|+|+..++.+|+.++.+++.+++.+.+.++|.|+|++.+|+++|..+|..+|+|++++||..+.
T Consensus 41 ~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~------------ 108 (187)
T PRK13810 41 KSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKD------------ 108 (187)
T ss_pred cCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCc------------
Confidence 46899999999999999999999999999887899999999999999999999999999999987642
Q ss_pred ccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-hhhccC--CCCeEEEEeccccc
Q 029741 110 YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLSV 186 (188)
Q Consensus 110 ~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-~~~~l~--~~~~~~l~~~~~~~ 186 (188)
++..... .+.+.+|++|+||||++|||+|+.++++.++++|++++++++++++.+ ++++++ |+|+++|+++++.+
T Consensus 109 ~g~~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~sl~~~~~~~ 186 (187)
T PRK13810 109 YGTGSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELVPLVSASDLL 186 (187)
T ss_pred cCCCceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEEEEEEHHHhh
Confidence 2222221 245569999999999999999999999999999999999999999977 677786 99999999998854
No 10
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.95 E-value=7e-27 Score=190.43 Aligned_cols=166 Identities=21% Similarity=0.362 Sum_probs=141.4
Q ss_pred hhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 12 ~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
++.++|.++-|.+|+ |+ +++..++.||..++.+++.++.++.+.++|+|++++.+|+++|..+|.+||+|++++
T Consensus 84 ~l~~~l~~~~rilpg----g~--~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~viv 157 (268)
T TIGR01743 84 ELCQSLSEPERILPG----GY--LYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIV 157 (268)
T ss_pred HHHHHHHHCCCcccC----Ce--EEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEE
Confidence 567788888899988 64 458899999999999999999999888899999999999999999999999999999
Q ss_pred eecCCC-CCcccchheeeecc--ceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhh
Q 029741 92 RKPNKL-PGEVISEAYVLEYG--TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 168 (188)
Q Consensus 92 ~k~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~ 168 (188)
||..+. ++.+++.+|..... .+.++++.+.+.+|++||||||+++||+|+.+++++++++|++++++++++++.++.
T Consensus 158 RK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~~~~ 237 (268)
T TIGR01743 158 RKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNEGVD 237 (268)
T ss_pred EECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECCCCh
Confidence 998765 45555555533222 125667666677999999999999999999999999999999999999999998766
Q ss_pred hccCCCCeEEEEeccc
Q 029741 169 RRLDGKPLYILVEPRL 184 (188)
Q Consensus 169 ~~l~~~~~~~l~~~~~ 184 (188)
+++ +.+++||+++++
T Consensus 238 ~~l-~~~~~SL~~~~~ 252 (268)
T TIGR01743 238 EKL-VDDYMSLLTLSN 252 (268)
T ss_pred HHc-CCCceEEEEEee
Confidence 666 458999998876
No 11
>PRK09213 pur operon repressor; Provisional
Probab=99.95 E-value=1.1e-26 Score=189.61 Aligned_cols=166 Identities=24% Similarity=0.418 Sum_probs=140.1
Q ss_pred hhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 12 ~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
++.++|.+..|-+|+ | |+++..++.+|..++.+++.+++++.+.++|+|++++.+|+++|..+|.+|++|++++
T Consensus 86 ~L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~viv 159 (271)
T PRK09213 86 ELCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIV 159 (271)
T ss_pred HHHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 455677777888888 5 4558889999999999999999999888899999999999999999999999999999
Q ss_pred eecCCC-CCcccchheeeecc--ceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhh
Q 029741 92 RKPNKL-PGEVISEAYVLEYG--TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 168 (188)
Q Consensus 92 ~k~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~ 168 (188)
||..+. ++.+++.+|..... .+.++++.+.+.+|++||||||+++||+|+.+++++++++|++++++++++++.++.
T Consensus 160 RK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~~~ 239 (271)
T PRK09213 160 RRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKEPE 239 (271)
T ss_pred EECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCCCh
Confidence 997765 45555555532211 125677766677999999999999999999999999999999999999999998766
Q ss_pred hccCCCCeEEEEeccc
Q 029741 169 RRLDGKPLYILVEPRL 184 (188)
Q Consensus 169 ~~l~~~~~~~l~~~~~ 184 (188)
+++ ..+++||+++++
T Consensus 240 ~~l-~~~~~SL~~~~~ 254 (271)
T PRK09213 240 ERL-VDDYVSLLKLSE 254 (271)
T ss_pred hhc-CCceEEEEEEeh
Confidence 666 458999999876
No 12
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.94 E-value=2.1e-25 Score=179.98 Aligned_cols=160 Identities=23% Similarity=0.395 Sum_probs=129.0
Q ss_pred HhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCC
Q 029741 17 ISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK 96 (188)
Q Consensus 17 ~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~ 96 (188)
+.+.+++.|+ | |+|+..++.||+.++.+++.++.++.+.++|+|++++.+|+++|..+|..||+|++++||.++
T Consensus 72 l~~ri~~~~~----g--y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~ 145 (238)
T PRK08558 72 VKARIKVDDE----G--YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKE 145 (238)
T ss_pred HHhhcccCCC----C--EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCC
Confidence 3444444554 4 899999999999999999999999987789999999999999999999999999999887654
Q ss_pred CC-Ccccchheee-eccc-eeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-hhhccC
Q 029741 97 LP-GEVISEAYVL-EYGT-DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD 172 (188)
Q Consensus 97 ~~-~~~~~~~~~~-~~~~-~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-~~~~l~ 172 (188)
.. +.++. +|.. +.+. ..+++..+.+.+|++||||||+++||+|+..++++++++|+++++++++++..+ +.+++.
T Consensus 146 ~~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~~~~~l~ 224 (238)
T PRK08558 146 TGVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAR 224 (238)
T ss_pred CCCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCchHHHHHh
Confidence 32 22222 2221 1111 245555455679999999999999999999999999999999999999999977 466663
Q ss_pred ---CCCeEEEEecc
Q 029741 173 ---GKPLYILVEPR 183 (188)
Q Consensus 173 ---~~~~~~l~~~~ 183 (188)
++|+.+|++++
T Consensus 225 ~~~~vpv~sl~~~~ 238 (238)
T PRK08558 225 EETDAPVDALYTLE 238 (238)
T ss_pred HhcCCCEEEEEEeC
Confidence 89999999874
No 13
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=1.8e-25 Score=176.69 Aligned_cols=146 Identities=19% Similarity=0.278 Sum_probs=126.4
Q ss_pred CCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeee
Q 029741 30 PGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLE 109 (188)
Q Consensus 30 ~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~ 109 (188)
.+..|+|+..++.+|..++.+++.+++.+.+.++|+|+|++.+|+++|..+|..+++|+.+.||..+.++..
T Consensus 35 ~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~-------- 106 (206)
T PRK13809 35 ETPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPS-------- 106 (206)
T ss_pred CCCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCc--------
Confidence 348999999999999999999999999987778999999999999999999999999999999877654431
Q ss_pred ccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-hhhccC--CCCeEEEEeccccc
Q 029741 110 YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLSV 186 (188)
Q Consensus 110 ~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-~~~~l~--~~~~~~l~~~~~~~ 186 (188)
+.+.. .+...+|++|+||||++|||+|+.++++.|+++|++++++++++++.. +++++. |+|++||+++++.+
T Consensus 107 ---~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~sl~~~~~l~ 182 (206)
T PRK13809 107 ---DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSSVFTVPDLI 182 (206)
T ss_pred ---CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEEEEEHHHHH
Confidence 12322 234569999999999999999999999999999999999999999875 666664 89999999998854
Q ss_pred c
Q 029741 187 N 187 (188)
Q Consensus 187 ~ 187 (188)
+
T Consensus 183 ~ 183 (206)
T PRK13809 183 K 183 (206)
T ss_pred H
Confidence 3
No 14
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=9.6e-25 Score=168.87 Aligned_cols=140 Identities=25% Similarity=0.338 Sum_probs=120.4
Q ss_pred CceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeec
Q 029741 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEY 110 (188)
Q Consensus 31 g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 110 (188)
+..|+|...+..+|+.++.+++.+++.+.+. |+|+|++.+|+++|..+|..+++|+++.||.++. +
T Consensus 29 S~~yid~~~~~~~p~~~~~i~~~l~~~i~~~--d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~------------y 94 (176)
T PRK13812 29 SEYYVDKYLFETDPDCLRLIAEAFADRIDED--TKLAGVALGAVPLVAVTSVETGVPYVIARKQAKE------------Y 94 (176)
T ss_pred CCEEEeCeeccCCHHHHHHHHHHHHHHhccC--CEEEEeecchHHHHHHHHHHHCCCEEEEeccCCc------------C
Confidence 4789999999999999999999999998643 8999999999999999999999999999987642 2
Q ss_pred cceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-hhhccC--CCCeEEEEeccccc
Q 029741 111 GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLSV 186 (188)
Q Consensus 111 ~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-~~~~l~--~~~~~~l~~~~~~~ 186 (188)
++.... .+...+|++|+||||+++||+|+.++++.|+++|++++++++++++.+ ++++++ |+|+++|+++++..
T Consensus 95 g~~~~~--~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~sL~~~~~~~ 171 (176)
T PRK13812 95 GTGNRI--EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEALVTASDLL 171 (176)
T ss_pred CCCCeE--EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEEEEeHHHHH
Confidence 222111 134458999999999999999999999999999999999999999986 566664 99999999998743
No 15
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=2.1e-24 Score=166.22 Aligned_cols=139 Identities=27% Similarity=0.412 Sum_probs=118.4
Q ss_pred CceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeec
Q 029741 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEY 110 (188)
Q Consensus 31 g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 110 (188)
+..|+|+..++.+|+.++.+++.+++.+ ++|+|++++.+|+++|..+|..+|+|++++||.++..+
T Consensus 28 s~~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g----------- 93 (170)
T PRK13811 28 SRYYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHG----------- 93 (170)
T ss_pred CCEEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCCC-----------
Confidence 3678899999999999999999987654 68999999999999999999999999999988764322
Q ss_pred cceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-hhhccC--CCCeEEEEecccccc
Q 029741 111 GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLSVN 187 (188)
Q Consensus 111 ~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-~~~~l~--~~~~~~l~~~~~~~~ 187 (188)
...... +. .+|++|+||||+++||+|+.++++.|+++||+++++++++++.+ ++++++ |+|+++|+++++..|
T Consensus 94 -~~~~~~--g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~sl~~~~~~~~ 169 (170)
T PRK13811 94 -KAGLII--GD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTPLVRVSELLN 169 (170)
T ss_pred -CcceEE--cc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEEEeEHHHHhc
Confidence 111221 33 58999999999999999999999999999999999999999987 466664 999999999987654
No 16
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=163.17 Aligned_cols=162 Identities=25% Similarity=0.377 Sum_probs=125.5
Q ss_pred HhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCC
Q 029741 17 ISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK 96 (188)
Q Consensus 17 ~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~ 96 (188)
+...+|++|.|+..+..+++..+++.||..++.+++.+++.+.+ ++|+|++++.+|+++|..+|..+++|++.++|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 45678999999998888999999999999999999999999976 78999999999999999999999999988776543
Q ss_pred C--CCcccchheeeeccce-eEEEecCC--CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhcc
Q 029741 97 L--PGEVISEAYVLEYGTD-RLEMHVGA--IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRL 171 (188)
Q Consensus 97 ~--~~~~~~~~~~~~~~~~-~~~l~~~~--~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l 171 (188)
. +.......++...+.. .+.+.... ..+|++||||||+++||+|+.++++.|+++|+++++++++++.++...++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~~~~~ 166 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDASNRL 166 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCCCCCC
Confidence 2 1211111111111211 22222111 24899999999999999999999999999999999999999998754444
Q ss_pred CCCCeEEEEec
Q 029741 172 DGKPLYILVEP 182 (188)
Q Consensus 172 ~~~~~~~l~~~ 182 (188)
+ +..|.++
T Consensus 167 ~---~~~~~~~ 174 (178)
T PRK07322 167 D---VIYLAHL 174 (178)
T ss_pred c---eEeeccc
Confidence 3 4555444
No 17
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.92 E-value=6.6e-24 Score=163.93 Aligned_cols=140 Identities=18% Similarity=0.293 Sum_probs=121.0
Q ss_pred CceEEechhhhcCHHHHHHHHHHHHHHHhc-CCCcEEEEeCCCChhhHHHHHHHhCCC-----eEEEeecCCCCCcccch
Q 029741 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRD-MGISVVAGIEARGFVFGPSIALAIGAK-----FVPLRKPNKLPGEVISE 104 (188)
Q Consensus 31 g~~~~d~~~ll~~~~~~~~l~~~la~~~~~-~~~d~Iv~v~~gG~~~a~~lA~~l~~p-----~~~~~k~~~~~~~~~~~ 104 (188)
+..|+|+..++.+|+..+.+++.+++.+.+ .++|+|+|++.+|+++|..+|..+++| +.+.+|.++..+.
T Consensus 22 s~~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~---- 97 (173)
T TIGR00336 22 SPYYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGE---- 97 (173)
T ss_pred CCEEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCC----
Confidence 578999999999999999999999999986 589999999999999999999999999 8887776542221
Q ss_pred heeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccC---CCCeEEE
Q 029741 105 AYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLD---GKPLYIL 179 (188)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~---~~~~~~l 179 (188)
.... .+...+|++||||||+++||+|+.++++.|+++|++++++++++++.+ +++++. |+|++||
T Consensus 98 --------~~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~sl 167 (173)
T TIGR00336 98 --------GGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISL 167 (173)
T ss_pred --------CCce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEEEE
Confidence 1111 134568999999999999999999999999999999999999999976 666773 9999999
Q ss_pred Eeccc
Q 029741 180 VEPRL 184 (188)
Q Consensus 180 ~~~~~ 184 (188)
+++++
T Consensus 168 ~~~~~ 172 (173)
T TIGR00336 168 ITLKD 172 (173)
T ss_pred EeHhh
Confidence 99876
No 18
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.92 E-value=8.4e-24 Score=167.10 Aligned_cols=143 Identities=29% Similarity=0.384 Sum_probs=121.4
Q ss_pred CceEEechhhhcCHHHHHHHHHHHHHHHhcC--CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheee
Q 029741 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVL 108 (188)
Q Consensus 31 g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~ 108 (188)
+..|+|+..++.+|+.++.+++.+++++.+. ++|+|+|++.+|+++|..+|..|++|+++.+|..+..+.
T Consensus 31 s~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~-------- 102 (202)
T PRK00455 31 SPYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGE-------- 102 (202)
T ss_pred CCeeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCC--------
Confidence 3689999999999999999999999999876 899999999999999999999999999998875432111
Q ss_pred eccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-hhhccC--CCCeEEEEecccc
Q 029741 109 EYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLS 185 (188)
Q Consensus 109 ~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-~~~~l~--~~~~~~l~~~~~~ 185 (188)
...+. ....+|++||||||+++||+|+.++++.|+++|++++++++++++.+ ++++++ |+|++||+++++.
T Consensus 103 ---~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~~~~~~~~~~~g~~~~sl~~~~~~ 176 (202)
T PRK00455 103 ---GGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQSAAQEVFADAGVPLISLITLDDL 176 (202)
T ss_pred ---CceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECcchHHHHHHhcCCcEEEEeeHHHH
Confidence 11122 22347999999999999999999999999999999999999999964 555554 9999999999885
Q ss_pred cc
Q 029741 186 VN 187 (188)
Q Consensus 186 ~~ 187 (188)
++
T Consensus 177 ~~ 178 (202)
T PRK00455 177 LE 178 (202)
T ss_pred HH
Confidence 43
No 19
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.92 E-value=2.4e-23 Score=164.23 Aligned_cols=148 Identities=22% Similarity=0.354 Sum_probs=119.0
Q ss_pred CCCCceEEechhhhcCHHHHHHHHHHHHHHHh--cCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchh
Q 029741 28 PIPGIMFQDITTLLLDHKAFKDTVDIFVDRYR--DMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEA 105 (188)
Q Consensus 28 ~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~--~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~ 105 (188)
|.++..|+|+..+..+|+.++.+++.+++.+. +.++|+|+|++.+|+++|..+|..|++|+...++.+..++..
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~---- 124 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEG---- 124 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccc----
Confidence 55688999999999999999999999999884 347899999999999999999999999997766443211110
Q ss_pred eeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeEEEEeccc
Q 029741 106 YVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~~l~~~~~ 184 (188)
......+... ....+|++|+||||++|||+|+.++++.|+++|+++++++++++++ +.+.+.|+|++||+++..
T Consensus 125 ---~~~~~~~~~~-~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~-g~~~~~~vpv~sl~~~~~ 198 (200)
T PRK02277 125 ---EKKTGSFSRN-FASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS-GIDEIDGVPVYSLIRVVR 198 (200)
T ss_pred ---ccccceeccc-cccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc-chhhhcCCCeEEEEEEEe
Confidence 0001111110 1235899999999999999999999999999999999999999997 455677999999998753
No 20
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.91 E-value=3.2e-23 Score=161.83 Aligned_cols=138 Identities=25% Similarity=0.460 Sum_probs=118.1
Q ss_pred CCceEEechhhhcCHHHHHHHHHHHHHHHhcC--CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchhee
Q 029741 30 PGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYV 107 (188)
Q Consensus 30 ~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~ 107 (188)
.+..|+|+..++.+|+.++.+++.+++++.+. ++|+|++++.||+++|..+|..|++|+++.+|...
T Consensus 24 ~s~~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~----------- 92 (187)
T TIGR01367 24 HSPYFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG----------- 92 (187)
T ss_pred cCCeeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC-----------
Confidence 34789999999999999999999999999765 78999999999999999999999999987765431
Q ss_pred eeccceeEEEecC-CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeEEEEeccc
Q 029741 108 LEYGTDRLEMHVG-AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 108 ~~~~~~~~~l~~~-~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~~l~~~~~ 184 (188)
.+.+..+ ...+|++|||||||++||+|+.++++.|+++|++++++++++++.++.....|+|+++|++++.
T Consensus 93 ------~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~~~~~~~~~~~~sl~~~~~ 164 (187)
T TIGR01367 93 ------GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQGGKPDSGVPLMSLKELEF 164 (187)
T ss_pred ------cEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcCCCcccCCCCEEEEEEEec
Confidence 0111111 2358999999999999999999999999999999999999999987655556999999999843
No 21
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.91 E-value=7.9e-24 Score=184.85 Aligned_cols=142 Identities=20% Similarity=0.354 Sum_probs=125.9
Q ss_pred CceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeec
Q 029741 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEY 110 (188)
Q Consensus 31 g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 110 (188)
+..|+|+..++.+|..++.+++.+++.+.+.++|.|+|++.+|+++|..+|..+++|+++.||..|.++
T Consensus 313 S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G----------- 381 (477)
T PRK05500 313 FSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHG----------- 381 (477)
T ss_pred CCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCccC-----------
Confidence 478999999999999999999999999987789999999999999999999999999999998865332
Q ss_pred cceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-hhhccC--CCCeEEEEeccccc
Q 029741 111 GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLSV 186 (188)
Q Consensus 111 ~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-~~~~l~--~~~~~~l~~~~~~~ 186 (188)
+..+. .+.+.+|++|+|||||+|||+|+.++++.|+++|++++++++++++.+ ++++|+ |+|++||+++++..
T Consensus 382 -~~~~i--eG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g~~~~L~~~gv~~~Sl~tl~el~ 457 (477)
T PRK05500 382 -TRRLI--EGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGVKDKLQSHGYQAYSVLTISEIT 457 (477)
T ss_pred -CCceE--ecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcchHHHHHhcCCCEEEEEEHHHHH
Confidence 22221 255569999999999999999999999999999999999999999987 567775 89999999998854
No 22
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.91 E-value=5.4e-23 Score=160.72 Aligned_cols=159 Identities=25% Similarity=0.326 Sum_probs=127.9
Q ss_pred hHHHHhh-cccccCCCCC----CCceEEechhhhcCHHHHHHHHHHHHHHHhcC-CCcEEEEeCCCChhhHHHHHHHhC-
Q 029741 13 RLQGISK-AIRVVPDFPI----PGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIG- 85 (188)
Q Consensus 13 ~~~~~~~-~~r~~~~~~~----~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~-~~d~Iv~v~~gG~~~a~~lA~~l~- 85 (188)
+.+.+.+ ..-..+.|+. .+..|+|...+..+|+..+.++..+++.+.+. ++|+|+|++.+|+|+|..+|..|+
T Consensus 6 ~~~~l~~~~a~~fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~ 85 (201)
T COG0461 6 LAELLLEKGALKFGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAH 85 (201)
T ss_pred HHHHHHHcCCeecCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhcc
Confidence 4445554 1122355552 34899999999999999999999999999884 899999999999999999999994
Q ss_pred CC-eEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeC
Q 029741 86 AK-FVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 86 ~p-~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~ 164 (188)
.| +++.||..+-+++. +.++ +...+|++|+||||++|||+|+.++++.|+++|+.++++++++++
T Consensus 86 ~~~~~~~Rke~K~hG~~-----------~~ie---G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR 151 (201)
T COG0461 86 LPPMAYVRKEAKDHGTG-----------GLIE---GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDR 151 (201)
T ss_pred CCcEEEEeceeccCCCc-----------ceeE---ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEec
Confidence 22 77788776644321 2222 333499999999999999999999999999999999999999999
Q ss_pred hh-hhhccC--CCCeEEEEecccc
Q 029741 165 PE-GQRRLD--GKPLYILVEPRLS 185 (188)
Q Consensus 165 ~~-~~~~l~--~~~~~~l~~~~~~ 185 (188)
.+ +.+.+. |+++++|++++|.
T Consensus 152 ~~~~~~~~~~~g~~~~sl~tl~dl 175 (201)
T COG0461 152 QSGAKEVLKEYGVKLVSLVTLSDL 175 (201)
T ss_pred chhHHHHHHhcCCceEEEeeHHHH
Confidence 76 555565 9999999999984
No 23
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1.2e-21 Score=157.35 Aligned_cols=162 Identities=21% Similarity=0.350 Sum_probs=118.6
Q ss_pred HHhhcccccCCCCCCCceEEechhhhcCH---HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCC-eEEE
Q 029741 16 GISKAIRVVPDFPIPGIMFQDITTLLLDH---KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAK-FVPL 91 (188)
Q Consensus 16 ~~~~~~r~~~~~~~~g~~~~d~~~ll~~~---~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p-~~~~ 91 (188)
++..++|.+|++| .|+..++.++ +.++.+++.|++++.+.++|+|+|++.+|+++|..+|.+||++ ++.+
T Consensus 41 ~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl 114 (233)
T PRK06031 41 QLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPL 114 (233)
T ss_pred EeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEE
Confidence 5677888888865 4788999997 5556799999999987789999999999999999999999974 3444
Q ss_pred eecCCCCC--cc-cc-hheeeeccceeEEEecC--CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeCh
Q 029741 92 RKPNKLPG--EV-IS-EAYVLEYGTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (188)
Q Consensus 92 ~k~~~~~~--~~-~~-~~~~~~~~~~~~~l~~~--~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~ 165 (188)
++.++... .. .. .++......+.+.+... ...+|++||||||+++||+|+.+++++|+++|++++++++++.+.
T Consensus 115 ~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~g 194 (233)
T PRK06031 115 GTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQS 194 (233)
T ss_pred EEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEcc
Confidence 43222211 00 00 00110111223444322 235899999999999999999999999999999999999999998
Q ss_pred h-hhhccC------CCCeEEEEecc
Q 029741 166 E-GQRRLD------GKPLYILVEPR 183 (188)
Q Consensus 166 ~-~~~~l~------~~~~~~l~~~~ 183 (188)
+ ++++|. ..++.++.+++
T Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~p 219 (233)
T PRK06031 195 ERWRESLAAAGPQWPARVVGVFATP 219 (233)
T ss_pred ccHHHHHHhcCCCcccceEEEeecc
Confidence 7 666664 25677777665
No 24
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.83 E-value=5.9e-20 Score=133.71 Aligned_cols=122 Identities=27% Similarity=0.428 Sum_probs=92.3
Q ss_pred hhhcCHHHHHHHHHHHHHHHhcC--CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEE
Q 029741 39 TLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLE 116 (188)
Q Consensus 39 ~ll~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 116 (188)
+++.+++.+..+++.+++++.+. ++|.|+|++.+|+++|..+|.+++.|+....+....... ............+.
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPG--SDKTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESE--EEEEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeeccccc--chhhhhccCceEEe
Confidence 46789999999999999999865 567899999999999999999999998775443210000 00000011111222
Q ss_pred EecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029741 117 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 117 l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
.......+|++||||||+++||+|+.++++.|+++|++++.+++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2234456999999999999999999999999999999999999875
No 25
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.83 E-value=1.7e-19 Score=136.15 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=113.3
Q ss_pred CCceEEechhhhcCHHHHHHHHHHHHHH-Hhc--CCCcEEEEeCCCChhhHHHHHHHhCCCeEEEe--ecCCCCCcccch
Q 029741 30 PGIMFQDITTLLLDHKAFKDTVDIFVDR-YRD--MGISVVAGIEARGFVFGPSIALAIGAKFVPLR--KPNKLPGEVISE 104 (188)
Q Consensus 30 ~g~~~~d~~~ll~~~~~~~~l~~~la~~-~~~--~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~--k~~~~~~~~~~~ 104 (188)
|-..++|++++=..+.-++.++..++.. +.. .++|+|+|++..|+|+|.++|..||..+...+ |.++..+.
T Consensus 51 p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~---- 126 (203)
T COG0856 51 PVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGA---- 126 (203)
T ss_pred CcceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccC----
Confidence 4478999999988899999999999983 332 37899999999999999999999999986543 22221110
Q ss_pred heeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeEEEEecc
Q 029741 105 AYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPR 183 (188)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~~l~~~~ 183 (188)
.....+.-. ..-..||+++||||++|||+|+.++++.|++.|++.+.|++++++. +...++|+|+.||+.+.
T Consensus 127 -----~~~G~iS~N-Fa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~-G~dei~gvPi~sLlri~ 198 (203)
T COG0856 127 -----GKGGSISSN-FASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKK-GVDEIEGVPVESLLRIL 198 (203)
T ss_pred -----CcCceeecc-cccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccC-CcccccCcchHHhheee
Confidence 001122211 2236999999999999999999999999999999999999999987 56678899999998753
No 26
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.77 E-value=2e-17 Score=128.61 Aligned_cols=139 Identities=19% Similarity=0.163 Sum_probs=96.3
Q ss_pred hhcCHHHHHHHHHHHHHHHhcC---CCcEEEEeCCCChhhHHHHHHHhCCCeE--EEeecCCCCCcccchheeeecccee
Q 029741 40 LLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDR 114 (188)
Q Consensus 40 ll~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~gG~~~a~~lA~~l~~p~~--~~~k~~~~~~~~~~~~~~~~~~~~~ 114 (188)
.+.+++.+....+.++.++.+. +.++|+++..+|+.+|..+|+.|++|+. ++.+.+...... .....
T Consensus 15 ~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~--------~~~~~ 86 (181)
T PRK09162 15 CLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETT--------GGELV 86 (181)
T ss_pred EeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCcc--------CCcee
Confidence 3456666777777777666542 4579999999999999999999999863 343333211100 00111
Q ss_pred EEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeEEEEeccccc
Q 029741 115 LEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPRLSV 186 (188)
Q Consensus 115 ~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~~l~~~~~~~ 186 (188)
+........+||+|||||||+|||+|+.++++.|+++|++.+.+++++.++..+....-.|=+.-.++++|+
T Consensus 87 ~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~~~~~~~~~pD~~g~~~~~~~ 158 (181)
T PRK09162 87 WKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTHDRKAKPLKADFVGLEVPDRY 158 (181)
T ss_pred EecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCcccccCCCCCcEEEEEcCCce
Confidence 222222346899999999999999999999999999999999999999997644312222445555666654
No 27
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.73 E-value=3.2e-16 Score=120.28 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=93.5
Q ss_pred hcCHHHHHHHHHHHHHHHhcC---CCcEEEEeCCCChhhHHHHHHHhCCCeE--EEeecCCCCCcccchheeeeccceeE
Q 029741 41 LLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRL 115 (188)
Q Consensus 41 l~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~gG~~~a~~lA~~l~~p~~--~~~k~~~~~~~~~~~~~~~~~~~~~~ 115 (188)
+.+++.++..++.|+.++.+. ++++|++|..||+.+|..+++.|++|.. ++.-....+.. + ..+...+
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~------~-~~~~~~~ 74 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGM------Q-SSGDVKI 74 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCC------c-ccCceEE
Confidence 356677777777777777542 4679999999999999999999998753 23211110000 0 0111111
Q ss_pred EEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeEEEEeccc
Q 029741 116 EMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 116 ~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~~l~~~~~ 184 (188)
........+||+|||||||++||+|+.++++.|++.|++.+.+++++.++.++ +..-.|=+.-.++++
T Consensus 75 ~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~-~~~~~pDy~g~~v~d 142 (166)
T TIGR01203 75 LKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPSRR-KVDVKVDFVGFEIPD 142 (166)
T ss_pred ecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCccC-cCCCCCCEEEEEcCC
Confidence 11122345899999999999999999999999999999999999999998643 222123355556654
No 28
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.71 E-value=6.9e-16 Score=120.75 Aligned_cols=141 Identities=22% Similarity=0.277 Sum_probs=99.5
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhcC---CCcEEEEeCCCChhhHHHHHHHhCC---CeE--EEeecCCCCCcccchheee
Q 029741 37 ITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGA---KFV--PLRKPNKLPGEVISEAYVL 108 (188)
Q Consensus 37 ~~~ll~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~gG~~~a~~lA~~l~~---p~~--~~~k~~~~~~~~~~~~~~~ 108 (188)
+..++.+++.++..++.++.++.+. +.++|+|+..||+++|..+++.|+. |+. +++..+...+..
T Consensus 7 ~~~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~------- 79 (189)
T PLN02238 7 IEKVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTE------- 79 (189)
T ss_pred ccEEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCcc-------
Confidence 3455677777777777787777542 4589999999999999999999998 653 344332211110
Q ss_pred eccceeEEE-ecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhh-cc---CCCCeEEEEecc
Q 029741 109 EYGTDRLEM-HVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQR-RL---DGKPLYILVEPR 183 (188)
Q Consensus 109 ~~~~~~~~l-~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~-~l---~~~~~~~l~~~~ 183 (188)
..+...+.. ......+|++|||||||++||.|+.++++.|++.|++.+.++++++++..+. .+ .+.+=+.-++++
T Consensus 80 ~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~~r~~~~~~~~~~~d~~G~~ip 159 (189)
T PLN02238 80 SSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVKYELVGDGKEYVGFECP 159 (189)
T ss_pred ccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCccccCCccCCCCCceEEEEecC
Confidence 011112221 1122369999999999999999999999999999999999999999986332 12 144566666666
Q ss_pred c
Q 029741 184 L 184 (188)
Q Consensus 184 ~ 184 (188)
+
T Consensus 160 d 160 (189)
T PLN02238 160 D 160 (189)
T ss_pred C
Confidence 6
No 29
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.68 E-value=9.7e-16 Score=118.76 Aligned_cols=123 Identities=12% Similarity=0.212 Sum_probs=88.7
Q ss_pred hhhcCHHHHHHHHHHHHHHHhcC-----CCcEEEEeCCCChhhHHHHHHHhCCCeE--EEeecCCCCCcccchheeeecc
Q 029741 39 TLLLDHKAFKDTVDIFVDRYRDM-----GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYG 111 (188)
Q Consensus 39 ~ll~~~~~~~~l~~~la~~~~~~-----~~d~Iv~v~~gG~~~a~~lA~~l~~p~~--~~~k~~~~~~~~~~~~~~~~~~ 111 (188)
.++.+.+.++..++.++.++.+. ...+++|+..||+.+|..+++.|+.|.. ++...+.-.+.. ..+
T Consensus 6 ~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~-------~~~ 78 (178)
T PRK15423 6 EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMS-------TTR 78 (178)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCc-------ccC
Confidence 34567777776666666666431 2469999999999999999999999843 444433211110 011
Q ss_pred ceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhh
Q 029741 112 TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 168 (188)
Q Consensus 112 ~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~ 168 (188)
...+........+||+|||||||++||.||.++.+.+++.|++.+.++++++++.++
T Consensus 79 ~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~~r 135 (178)
T PRK15423 79 DVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRR 135 (178)
T ss_pred ceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCCCC
Confidence 112221122346999999999999999999999999999999999999999998643
No 30
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.68 E-value=1e-15 Score=116.35 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=85.9
Q ss_pred hcCHHHHHHHHHHHHHHHhcC-CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEec
Q 029741 41 LLDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHV 119 (188)
Q Consensus 41 l~~~~~~~~l~~~la~~~~~~-~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (188)
+.+++.+...++.+++++.+. ++|+|+|+++||+.+|..++++|++|++...+.. +|..+ +++.+.+..
T Consensus 9 ~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~s---------sY~~~-~~~~~~~~~ 78 (156)
T PRK09177 9 PVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCIS---------SYDHD-NQGELKVLK 78 (156)
T ss_pred EcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEE---------EECCC-cCCcEEEec
Confidence 468888899999999999755 4899999999999999999999999964221110 11111 112233322
Q ss_pred CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhc
Q 029741 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRR 170 (188)
Q Consensus 120 ~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~ 170 (188)
+...+|++||||||+++||.|+.++.+.+.+ +.+++++.++.++..
T Consensus 79 ~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~~~~~ 124 (156)
T PRK09177 79 RAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPAGRPL 124 (156)
T ss_pred CCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcCCCCC
Confidence 3346999999999999999999999999974 578889998764433
No 31
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.68 E-value=1.1e-15 Score=127.50 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=87.9
Q ss_pred CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHH
Q 029741 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (188)
Q Consensus 62 ~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl 141 (188)
+.++|++|+.||..+|..+|..+++|+.+++|.+.... +..+....+...+|++|+|||||++||+|+
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~------------~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl 227 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDR------------DVEISLPDAAPWAGRTPVLVDDIVSTGRTL 227 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCC------------eEEEEeccCcccCCCEEEEEecccCcHHHH
Confidence 34689999999999999999999999998887653211 111111112336999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 142 SAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
.++++.|+++||+++.++++|.... +.+++....+..++..+.
T Consensus 228 ~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~iv~Tdt 272 (301)
T PRK07199 228 IEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARVVSTDT 272 (301)
T ss_pred HHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCCEEEEeCC
Confidence 9999999999999999999998654 666776556777777665
No 32
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.65 E-value=2.7e-15 Score=124.31 Aligned_cols=110 Identities=22% Similarity=0.321 Sum_probs=86.2
Q ss_pred CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHH
Q 029741 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (188)
Q Consensus 62 ~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl 141 (188)
+.++|++++.||+.+|..+|+.+++|+.+++|.+..... ..+. ......+|++|+||||+++||+|+
T Consensus 154 ~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~------------~~~~-~~~~~v~Gk~VlIVDDIi~TG~Tl 220 (285)
T PRK00934 154 DDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTE------------VEIA-PKNLDVKGKDVLIVDDIISTGGTM 220 (285)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCe------------EEEe-ccccccCCCEEEEEcCccccHHHH
Confidence 345899999999999999999999999888776532111 0111 011235899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 142 SAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
..+++.|+++||+++.++++|.... +.+++....+..++..+.
T Consensus 221 ~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i~~tnt 265 (285)
T PRK00934 221 ATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEIIVTDT 265 (285)
T ss_pred HHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCCEEEEcCC
Confidence 9999999999999999999998543 666776556777776665
No 33
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.65 E-value=2.6e-15 Score=124.26 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=95.0
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCC-CCCcccchheeeeccceeE
Q 029741 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK-LPGEVISEAYVLEYGTDRL 115 (188)
Q Consensus 37 ~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~-~~~~~~~~~~~~~~~~~~~ 115 (188)
.+++...| .+++.+.+.. ..+..+||+|+.||...|..+|..|+.|+.++.|+|. .+.. .+.
T Consensus 143 vdnl~a~p----~l~~~~~~~~-~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~------------v~~ 205 (314)
T COG0462 143 VDNLYAAP----LLAEYIREKY-DLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNV------------VEV 205 (314)
T ss_pred cccccchH----HHHHHHHHhc-CCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCe------------EEE
Confidence 34444555 3444444443 2222599999999999999999999999999888773 2111 011
Q ss_pred EEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 116 EMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 116 ~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
....+ ..+||+++||||+++||+|+..+++.|++.||++|++++.|.... ..+++++..+..++..+.
T Consensus 206 ~~~~g-dV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i~~vivTnT 275 (314)
T COG0462 206 MNLIG-DVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEASAIDEVIVTDT 275 (314)
T ss_pred eeccc-ccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhcCCCCEEEEeCC
Confidence 11113 369999999999999999999999999999999999999998755 556666556777766655
No 34
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.64 E-value=4.5e-15 Score=124.74 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=87.0
Q ss_pred CcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHH
Q 029741 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (188)
Q Consensus 63 ~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~ 142 (188)
..+||+|+.||..+|..+|..||+|+.+++|++..... .....+.+ .+. .+||+|+|||||+|||+|+.
T Consensus 166 ~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~---------~~~~~~~~-~gd-v~Gr~viIVDDIidTG~Tl~ 234 (320)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKM---------NTSEVMNI-IGN-VKGKKCILIDDMIDTAGTIC 234 (320)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCC---------ceeEEEEe-ccc-cCCCEEEEEeeecCcHHHHH
Confidence 35899999999999999999999999887765431110 00111122 133 58999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 143 AAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 143 ~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
++++.|++.||++|.+++.|.... +.+++....+..++..+.
T Consensus 235 ~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~~iv~Tdt 278 (320)
T PRK02269 235 HAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIEKLVVLDT 278 (320)
T ss_pred HHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999998754 567776667888877765
No 35
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.63 E-value=4.3e-15 Score=129.90 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeE--EEeecCCCCCcccchheeeeccceeEEEec-CC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRLEMHV-GA 121 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~--~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 121 (188)
+....+++.|++.+.. +.|+|+++|.+|+++|..+|+.+|+|+. .++|+. ..........+.+.....+.+.. ..
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~-~~r~~i~~~qr~rn~~~~~~~~~~~~ 336 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHY-VGRTFIEPTQEMRNLKVKLKLNPMSK 336 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeec-cccccCCHHHHHHhhheeEEeccccc
Confidence 6677899999988764 6789999999999999999999999983 444432 21111111111111112333322 23
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEecc
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPR 183 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~ 183 (188)
..+||+|+||||++|||+|+.++++.|+++||+.|.+++.|.... ....++..++..|+..+
T Consensus 337 ~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~li~~~ 400 (445)
T PRK08525 337 VLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELISAN 400 (445)
T ss_pred ccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhEEEcC
Confidence 368999999999999999999999999999999999999998533 44444444455555433
No 36
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.62 E-value=1.7e-14 Score=111.62 Aligned_cols=120 Identities=22% Similarity=0.279 Sum_probs=85.7
Q ss_pred hhhcCHHHHHHHHHHHHHHHhcC----CCcEEEEeCCCChhhHHHHHHHh----CCC--eEEEeecCCCCCcccchheee
Q 029741 39 TLLLDHKAFKDTVDIFVDRYRDM----GISVVAGIEARGFVFGPSIALAI----GAK--FVPLRKPNKLPGEVISEAYVL 108 (188)
Q Consensus 39 ~ll~~~~~~~~l~~~la~~~~~~----~~d~Iv~v~~gG~~~a~~lA~~l----~~p--~~~~~k~~~~~~~~~~~~~~~ 108 (188)
..+.+++.+...++.++.++... ++++|+|+..||+++|..++..| +.| +.++.....-... +
T Consensus 4 ~~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~------~- 76 (176)
T PRK05205 4 KEILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDL------T- 76 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCc------c-
Confidence 45668888888888888888652 46799999999999999999999 544 3333221100000 0
Q ss_pred eccc-eeEE-EecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcC-CeEEEEEEEeeCh
Q 029741 109 EYGT-DRLE-MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMG-AEVVECACVVGLP 165 (188)
Q Consensus 109 ~~~~-~~~~-l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~G-a~~v~v~~l~~~~ 165 (188)
..+. .... ........|++|||||||++||+|+..+++.|++.| ++.+.++++++++
T Consensus 77 ~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 77 KKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred ccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 0000 0110 011223689999999999999999999999999999 7889999999984
No 37
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.62 E-value=3.1e-14 Score=112.90 Aligned_cols=125 Identities=13% Similarity=0.169 Sum_probs=88.4
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhcC---------CCcEEEEeCCCChhhHHHHHHHhC---CCe--EEEeecCCCCCccc
Q 029741 37 ITTLLLDHKAFKDTVDIFVDRYRDM---------GISVVAGIEARGFVFGPSIALAIG---AKF--VPLRKPNKLPGEVI 102 (188)
Q Consensus 37 ~~~ll~~~~~~~~l~~~la~~~~~~---------~~d~Iv~v~~gG~~~a~~lA~~l~---~p~--~~~~k~~~~~~~~~ 102 (188)
....+.+++.+...++.||.++.+. ++++|+|+..||+.+|..|+++|+ .|+ .++.-...-.+..
T Consensus 23 ~~~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~- 101 (211)
T PTZ00271 23 SAHTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVE- 101 (211)
T ss_pred cccEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCc-
Confidence 3345678887777777777766532 256899999999999999999996 663 2232221100100
Q ss_pred chheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhh
Q 029741 103 SEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 168 (188)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~ 168 (188)
+.+.-.+........+||+|||||||++||.||.++++.|++.|++.+.++++++++..+
T Consensus 102 ------s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~~r 161 (211)
T PTZ00271 102 ------TSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGR 161 (211)
T ss_pred ------ccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEcccCC
Confidence 011112221222346899999999999999999999999999999999999999997643
No 38
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.61 E-value=1.4e-14 Score=121.58 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=87.4
Q ss_pred CCcEEEEeCCCChhhHHHHHHHhC-CCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHH
Q 029741 62 GISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGT 140 (188)
Q Consensus 62 ~~d~Iv~v~~gG~~~a~~lA~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~T 140 (188)
+..+|++|+.||..+|..+|..|+ +|+.++.|.+..... ...+.+ .+ ..+||+|+|||||++||+|
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~-----------~~~~~~-~g-dv~Gr~viIVDDIidTG~T 232 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANV-----------ATVMNI-IG-DVQGKTCVLVDDLVDTAGT 232 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCc-----------eEEEec-cc-CCCCCEEEEEecccCchHH
Confidence 344899999999999999999998 899988776632111 011111 13 3599999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 141 LSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 141 l~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
+.++++.|+++||+++.+++.|.... +.+++...++..+++.+.
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~~iv~Tdt 278 (319)
T PRK04923 233 LCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVTDT 278 (319)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCCEEEEeCC
Confidence 99999999999999999999998755 556776667887777665
No 39
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.61 E-value=2e-15 Score=121.09 Aligned_cols=124 Identities=20% Similarity=0.218 Sum_probs=84.0
Q ss_pred hcCHHHHHHHHHHHHHHHh--cCCCcEEEEeC-------CCChhhHHHHHHHhC----CCeEEEeecCCCCCcccchhee
Q 029741 41 LLDHKAFKDTVDIFVDRYR--DMGISVVAGIE-------ARGFVFGPSIALAIG----AKFVPLRKPNKLPGEVISEAYV 107 (188)
Q Consensus 41 l~~~~~~~~l~~~la~~~~--~~~~d~Iv~v~-------~gG~~~a~~lA~~l~----~p~~~~~k~~~~~~~~~~~~~~ 107 (188)
..+....+.+++.++..+. ...+|.||++| .+|++++..+|+.++ +|+...+++............+
T Consensus 88 ~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~r 167 (225)
T COG1040 88 QGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALER 167 (225)
T ss_pred CCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHHH
Confidence 3467888888999988887 34789999998 589999888888875 4442222121111110100011
Q ss_pred eeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeCh
Q 029741 108 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (188)
Q Consensus 108 ~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~ 165 (188)
...-.+.+.+..+. ...++|+|||||+|||+|+.++.+.|++.|+++|.+++++...
T Consensus 168 r~nl~~aF~~~~~~-~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~~ 224 (225)
T COG1040 168 RRNLKGAFRLKKGI-EEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARAP 224 (225)
T ss_pred HHhccCCeecCCCC-CCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEecC
Confidence 11112345543322 2239999999999999999999999999999999999998753
No 40
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.61 E-value=2.3e-14 Score=108.97 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=92.0
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhcC---CCcEEEEeCCCChhhHHHHHHHhCCCeEE--EeecCCCCCcccchheeeecc
Q 029741 37 ITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLEYG 111 (188)
Q Consensus 37 ~~~ll~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~--~~k~~~~~~~~~~~~~~~~~~ 111 (188)
...++.+.+.++.-++++++++.+. +..+++|+..|+++|+..+..+++.|..+ +.-...-.++ .+
T Consensus 7 ~~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t---------~s 77 (178)
T COG0634 7 IKEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGT---------SS 77 (178)
T ss_pred cceEeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCc---------cc
Confidence 4556778888887777777777643 45589999999999999999999987632 3222111111 11
Q ss_pred ceeEEEec--CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhh
Q 029741 112 TDRLEMHV--GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 168 (188)
Q Consensus 112 ~~~~~l~~--~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~ 168 (188)
+..+.+.. +...+||+|||||||++||.||..+.+.|+.+||+.+.++++.+++..+
T Consensus 78 sg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r 136 (178)
T COG0634 78 SGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERR 136 (178)
T ss_pred CCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcccc
Confidence 22222222 3446999999999999999999999999999999999999999999744
No 41
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.59 E-value=7.6e-15 Score=114.93 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=78.0
Q ss_pred cCHHHHHHHHHHHHHHHhcC---CCcEEEEeC-------CCChhhHHHHHHHhCCC---eE-EEeecCCCCCcccchhee
Q 029741 42 LDHKAFKDTVDIFVDRYRDM---GISVVAGIE-------ARGFVFGPSIALAIGAK---FV-PLRKPNKLPGEVISEAYV 107 (188)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~-------~gG~~~a~~lA~~l~~p---~~-~~~k~~~~~~~~~~~~~~ 107 (188)
.+..+...+++.++..+... .+|.|+++| .+|++++..+|..+... +. .+.+.+.......+...+
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~~~Q~~l~~~~R 135 (190)
T TIGR00201 56 GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNNETQSKLKATLR 135 (190)
T ss_pred CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecccccccCCHHHH
Confidence 46677778888877665432 358999998 48998877777666422 11 122222111111111011
Q ss_pred eeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029741 108 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 108 ~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
...-.+.+.+... ...|++|||||||+|||+|+.++++.|+++|+++|.+++++
T Consensus 136 ~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 136 FLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 0111234544322 35899999999999999999999999999999999999886
No 42
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.59 E-value=3.6e-14 Score=118.52 Aligned_cols=124 Identities=23% Similarity=0.218 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhC-CCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCE
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGER 127 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~ 127 (188)
.+++.+.+.+.. +..+|++|+.||+.+|..+|..++ .|+.++.|.+.... .+.... .......+||+
T Consensus 136 ~la~~i~~~~~~-~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~----------~~~~~~-~~~~~dv~gr~ 203 (304)
T PRK03092 136 LLADYVRDKYDL-DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTV----------PNQVVA-NRVVGDVEGRT 203 (304)
T ss_pred HHHHHHHHhcCC-CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCC----------CCceEE-EecCcCCCCCE
Confidence 344444433322 334899999999999999999999 99988877653110 011111 11122359999
Q ss_pred EEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 128 ALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 128 VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
|+||||+++||+|+.++++.|++.|++.+.+++.|.... +.+++....+..++..+.
T Consensus 204 viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~~i~~t~t 262 (304)
T PRK03092 204 CVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAREVVVTDT 262 (304)
T ss_pred EEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCCEEEEeee
Confidence 999999999999999999999999999999999887653 567776555666666554
No 43
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.59 E-value=3.8e-14 Score=118.71 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=84.8
Q ss_pred CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHH
Q 029741 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (188)
Q Consensus 62 ~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl 141 (188)
+..+|++|+.||..+|..+|..||+|+.++.|.+..++. ...+.+. + ..+|++|+||||+++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~-----------~~~~~~~-~-~~~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV-----------SEVMNII-G-DVEGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee-----------EEEEeec-c-cCCCCEEEEEecccCcHHHH
Confidence 556999999999999999999999999888766532111 0112221 2 35899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 142 SAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
..+++.|+++|++.+.++++|.... +.+++....+..++..+.
T Consensus 225 ~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~t 269 (309)
T PRK01259 225 CKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVIDELVVTDS 269 (309)
T ss_pred HHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhcCCCCEEEEecC
Confidence 9999999999999999999987643 556665445666655544
No 44
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.58 E-value=5.1e-14 Score=118.85 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=85.9
Q ss_pred cEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHH
Q 029741 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (188)
Q Consensus 64 d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~ 143 (188)
.+|++|+.||..+|..+|..+|+|+.+++|++..... ...+.+. +. .+||+|+||||+++||+|+.+
T Consensus 170 ~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~-----------~~~~~~~-gd-v~Gk~VIIVDDIi~TG~Tl~~ 236 (332)
T PRK00553 170 LVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNV-----------AESINVL-GE-VKNKNCLIVDDMIDTGGTVIA 236 (332)
T ss_pred eEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcce-----------EeeEEee-cc-CCCCEEEEEeccccchHHHHH
Confidence 4899999999999999999999999988876532110 1122221 33 599999999999999999999
Q ss_pred HHHHHHHcCCeEEEEEEEeeChh--hhhccCC----CCeEEEEeccc
Q 029741 144 AVRLLERMGAEVVECACVVGLPE--GQRRLDG----KPLYILVEPRL 184 (188)
Q Consensus 144 ~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~----~~~~~l~~~~~ 184 (188)
+++.|+++||+.+++++.|.... +.+++.. .++..+++.+.
T Consensus 237 aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tnt 283 (332)
T PRK00553 237 AAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNS 283 (332)
T ss_pred HHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCC
Confidence 99999999999999999998654 5566643 36888877765
No 45
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.58 E-value=3.5e-14 Score=119.45 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=85.3
Q ss_pred cEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHH
Q 029741 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (188)
Q Consensus 64 d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~ 143 (188)
.+|++|+.||..+|..+|..|++|+.++++.+.... .... .+ .+ ..+||+|+|||||++||+|+.+
T Consensus 171 ~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~----------~~~~--~i-~g-dV~gk~viIVDDIidTG~Tl~~ 236 (323)
T PRK02458 171 VVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSE----------REEG--YI-IG-DVAGKKAILIDDILNTGKTFAE 236 (323)
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCc----------ceee--cc-cc-ccCCCEEEEEcceeCcHHHHHH
Confidence 489999999999999999999999987765432110 0011 11 13 3599999999999999999999
Q ss_pred HHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 144 AVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 144 ~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
+++.|+++||++|.+++.|.... +.+++...++..+++.+.
T Consensus 237 aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~iv~TdT 279 (323)
T PRK02458 237 AAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKEILVTDS 279 (323)
T ss_pred HHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCEEEEECC
Confidence 99999999999999999998754 556777667888877765
No 46
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.57 E-value=3.9e-14 Score=114.25 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=89.9
Q ss_pred echhhhcCHHHHHHHHHHHHHHHhcC---CCcEEEEeCCCChhhHHHHHHHhCC---------C--e---EEEeecCCCC
Q 029741 36 DITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGA---------K--F---VPLRKPNKLP 98 (188)
Q Consensus 36 d~~~ll~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~gG~~~a~~lA~~l~~---------p--~---~~~~k~~~~~ 98 (188)
++..++.+.+.++...+.||.++.+. +..+|+|+..||+.|+..|.+.++. | . .+++-.
T Consensus 52 ~~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vs---- 127 (241)
T PTZ00149 52 YLTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVK---- 127 (241)
T ss_pred cccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEE----
Confidence 35567788888888888888877643 4569999999999999999999872 2 1 222211
Q ss_pred CcccchheeeeccceeEEEec--CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhh
Q 029741 99 GEVISEAYVLEYGTDRLEMHV--GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEG 167 (188)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~--~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~ 167 (188)
+|....++..+.+.. ....+||+|||||||++||+|+.++++.|++.|++.+.+++++.++..
T Consensus 128 ------SY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~~ 192 (241)
T PTZ00149 128 ------SYCNDESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRTP 192 (241)
T ss_pred ------EccCCCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCcc
Confidence 121111222232221 123699999999999999999999999999999999999999998753
No 47
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.57 E-value=6.8e-14 Score=119.73 Aligned_cols=115 Identities=20% Similarity=0.316 Sum_probs=87.0
Q ss_pred CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeecccee-EEEe-cCCCCCCCEEEEEcCcccchH
Q 029741 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDR-LEMH-VGAIEPGERALVIDDLVATGG 139 (188)
Q Consensus 62 ~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~Gk~VLIVDDvi~TG~ 139 (188)
+..+|++|+.||..+|..+|..|++|+.+++|++...... .+++. .... .+...+|++|+||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 3469999999999999999999999999988876322111 11111 1111 132469999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeeC-hhhhhccCC----CCeEEEEeccc
Q 029741 140 TLSAAVRLLERMGAEVVECACVVGL-PEGQRRLDG----KPLYILVEPRL 184 (188)
Q Consensus 140 Tl~~~~~~L~~~Ga~~v~v~~l~~~-~~~~~~l~~----~~~~~l~~~~~ 184 (188)
|+..+++.|+++||+.+.++++|.. +++.+++.. -+++.++..+.
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH~vf~~a~~~l~~~~~~g~i~~iv~TdT 328 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATFGFFTNGLEKFDKAYEEGYFDRIIGTNL 328 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeecChHHHHHHHhhcccCCCCEEEEeCC
Confidence 9999999999999999999999987 446666532 24777776655
No 48
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.57 E-value=2.9e-14 Score=125.45 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (188)
.....+++.|++.... +.|+|+++|.+|.++|..+|+.+|+|+.. +.+.+.....++..+...+.....+.+.. ...
T Consensus 272 ~~R~~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~ 350 (469)
T PRK05793 272 ESRVRAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVN 350 (469)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccc
Confidence 4556889999987753 67899999999999999999999999964 33333222222222111111111232221 123
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeC
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~ 164 (188)
.+||+|+||||+++||+|+.++++.|+++||++|.+++.+..
T Consensus 351 v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 351 VEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCC
Confidence 589999999999999999999999999999999999988875
No 49
>PLN02440 amidophosphoribosyltransferase
Probab=99.56 E-value=2.4e-14 Score=126.18 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (188)
.....+++.|++.+.. ++|+|+++|.+|..+|..+|..+++|+.. +.|.+.....++..++..+....++.+.. ...
T Consensus 259 ~~r~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~ 337 (479)
T PLN02440 259 ESRLEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSV 337 (479)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeeccccccCcchhhhhhhheeeeeccccc
Confidence 4556777888877743 68999999999999999999999999852 22233222222211111111111233321 123
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~ 163 (188)
.+||+||||||++|||+|+.++++.|+++||++|.++++..
T Consensus 338 v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~p 378 (479)
T PLN02440 338 LEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIASP 378 (479)
T ss_pred ccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 69999999999999999999999999999999999998873
No 50
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.56 E-value=2.2e-14 Score=126.58 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEe-cCCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 122 (188)
+....+++.|++... .++|+|+++|.+|+++|..+|..+|+|+.. +.|++....+++..++..+....++.+. ....
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~ 374 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDV 374 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccc
Confidence 566788888886553 368999999999999999999999999863 3444333222221111111111122222 1234
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
.+||+|+||||++|||+|+.+++++|+++||++|.+....
T Consensus 375 ~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~s 414 (500)
T PRK07349 375 LAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISS 414 (500)
T ss_pred cCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 5899999999999999999999999999999998876443
No 51
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.54 E-value=7.9e-14 Score=122.80 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (188)
+..+.+++.|++.... ++|+|+++|.+|+++|..+|..+++|+.. +.|.+....++.......+...-++.... ...
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~ 357 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAV 357 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeecCccccccccccccccEEEEecccccc
Confidence 6777888888877653 78999999999999999999999999863 22333332222222111111111222221 233
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~ 160 (188)
.+||+|+||||+++||+|+.++++.|+++||+.|.+++
T Consensus 358 ~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 358 IEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred cCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 68999999999999999999999999999999999877
No 52
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.54 E-value=3.5e-14 Score=110.68 Aligned_cols=115 Identities=17% Similarity=0.303 Sum_probs=81.0
Q ss_pred hhcCHHHHHHHHHHHHHHHhc--CCCcEEEEeCCCChhhHHHHHHHhCC-CeEEEeecCCCCCcccchheeeeccceeEE
Q 029741 40 LLLDHKAFKDTVDIFVDRYRD--MGISVVAGIEARGFVFGPSIALAIGA-KFVPLRKPNKLPGEVISEAYVLEYGTDRLE 116 (188)
Q Consensus 40 ll~~~~~~~~l~~~la~~~~~--~~~d~Iv~v~~gG~~~a~~lA~~l~~-p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 116 (188)
.+.+++.++.++..+|+++.+ .+||+|+++.+||+.+|..|++.|++ |+..+.-..... . .. ..+...+.
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~-~-----~~-~~~~~~v~ 77 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDE-T-----AE-RDGEAKVK 77 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehh-h-----cc-cCCcceee
Confidence 456888999999999999973 58999999999999999999999998 554443222100 0 00 00111111
Q ss_pred EecCCC-CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 117 MHVGAI-EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 117 l~~~~~-~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
-..... ..||+|||||||.+||.||..+.+.|++.....+.++++
T Consensus 78 ~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 78 YPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred cCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 111111 699999999999999999999999999955554544433
No 53
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=3e-14 Score=125.14 Aligned_cols=117 Identities=22% Similarity=0.228 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeecc--ceeEEEecCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYG--TDRLEMHVGA 121 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 121 (188)
+....+++.|++... .+.|+|+++|..|.+.|..+|..+|+|+.. +.|++....++...+...+.. +..+... ..
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~-~~ 344 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAV-RG 344 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceecc-cc
Confidence 667789999998764 368999999999999999999999999854 334333322222111111111 1233322 23
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~ 163 (188)
..+||+|+||||++|||+|+.++++.|+++||++|.+.+...
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 468999999999999999999999999999999988775543
No 54
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.52 E-value=2.7e-13 Score=113.59 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=84.7
Q ss_pred CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHH
Q 029741 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (188)
Q Consensus 62 ~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl 141 (188)
+.++|++++.||+.+|..+|..||+|+.+++|.+..... ..... ......+|++|+||||+++||+|+
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~-----------~~~~~-~~~~~v~g~~vliVDDii~tG~Tl 226 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATN-----------EVEVM-NLVGDVEGKDVVIVDDIIDTGGTI 226 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCC-----------EEEEE-ecccccCCCEEEEEccccCCHHHH
Confidence 456999999999999999999999999988776542110 00011 112235899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeeC--hhhhhccCCCCeEEEEeccc
Q 029741 142 SAAVRLLERMGAEVVECACVVGL--PEGQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~~~--~~~~~~l~~~~~~~l~~~~~ 184 (188)
..+++.|++.|++++.+++.|.. +++.+++....+..+++.+.
T Consensus 227 ~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt 271 (308)
T TIGR01251 227 AKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAGVEEVIVTNT 271 (308)
T ss_pred HHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999999863 33556665444666666655
No 55
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.52 E-value=5.4e-14 Score=122.98 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeec-c-ceeEEEecCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEY-G-TDRLEMHVGA 121 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~ 121 (188)
.....+++.|++... .++|+|+++|..|+++|..+|..+|+|+.. +.|++.....++...+..+. + ...+... ..
T Consensus 257 ~~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~-~~ 334 (442)
T TIGR01134 257 KARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPI-RE 334 (442)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccc-cc
Confidence 556788888887653 378999999999999999999999999863 33333222222111111011 0 1122111 22
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
..+||+|+||||++|||+|+.++++.|+++|++++.+.+.
T Consensus 335 ~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 335 VFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 3589999999999999999999999999999999998776
No 56
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.52 E-value=5.3e-14 Score=123.83 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeec-c-ceeEEEecCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEY-G-TDRLEMHVGA 121 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~ 121 (188)
.....+++.|++.+.. +.|+|+++|..|..+|..+|..+|+|+.. +.|++.....+...++..+. + +..+... ..
T Consensus 269 ~~R~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~-~~ 346 (484)
T PRK07272 269 TARKRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAV-SG 346 (484)
T ss_pred HHHHHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCcccc-cc
Confidence 4446788888876643 57999999999999999999999999843 33333332222211111111 1 1123221 23
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
..+||+|+||||++|||+|+.++++.|+++||+.+.+++.
T Consensus 347 ~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 347 VVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred ccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 4689999999999999999999999999999999999998
No 57
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.51 E-value=1.3e-13 Score=120.27 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CC
Q 029741 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GA 121 (188)
Q Consensus 44 ~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 121 (188)
......+++.|++... .++|+|+++|..|..+|..+|..+|+|+.. +.|++.....++..++ +.....+.+.. ..
T Consensus 254 ~~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~q--r~~~~~~k~~~~~~ 330 (442)
T PRK08341 254 YSARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSG--RELKVKLKLSPVRE 330 (442)
T ss_pred HHHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEeccccccccCcCc--hhhhheeeeccccc
Confidence 3566788888887664 368999999999999999999999999964 5555433333322211 11111222211 22
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
..+||+|+||||++|||+|+.++++.|+++||++|.+.+.
T Consensus 331 ~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~ 370 (442)
T PRK08341 331 VINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIA 370 (442)
T ss_pred ccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 3589999999999999999999999999999999888763
No 58
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.51 E-value=7.6e-14 Score=123.71 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeecc--ceeEEEecCCC
Q 029741 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYG--TDRLEMHVGAI 122 (188)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 122 (188)
..+.+++.+...+...+.|+|+++|.++..+|..+|..+++|+.. +.+++.....+...+...+.. ...+... ...
T Consensus 277 lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~-~~~ 355 (501)
T PRK09246 277 MGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAI-RAE 355 (501)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCc-ccc
Confidence 334444444334333347899999999999999999999999853 222222211111111100110 1122211 223
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeC
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~ 164 (188)
.+||+|+||||++|||+|+.++++.|+++||+.|.+++++..
T Consensus 356 v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~ 397 (501)
T PRK09246 356 FKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPP 397 (501)
T ss_pred ccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEccc
Confidence 689999999999999999999999999999999999988653
No 59
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.51 E-value=1.9e-13 Score=120.15 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (188)
+....+++.|++... .+.|+|+++|..|.+.|..+|..+|+|+.. +.|.+.....+.......+....++.+.. ...
T Consensus 275 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~ 353 (474)
T PRK06388 275 QARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREV 353 (474)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEecccccc
Confidence 556688888887653 367899999999999999999999999854 34444332222221111111111233221 223
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~ 163 (188)
.+||+||||||++|||+|+.+++++|+++||++|.+.....
T Consensus 354 i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 354 ISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred ccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 58999999999999999999999999999999988765543
No 60
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=5e-13 Score=112.71 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=85.2
Q ss_pred CcEEEEeCCCChhhHHHHHHHhC-CCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHH
Q 029741 63 ISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (188)
Q Consensus 63 ~d~Iv~v~~gG~~~a~~lA~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl 141 (188)
..+|++|+.||..+|..+|..|+ .|+.++.|++..... ...+.+ .+ ..+|++|+||||+++||.|+
T Consensus 180 ~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-----------~~~~~~-~~-~v~g~~viiVDDii~TG~T~ 246 (330)
T PRK02812 180 DIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----------AEVLNV-IG-DVKGKTAILVDDMIDTGGTI 246 (330)
T ss_pred CeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-----------eeeEec-cc-cCCCCEEEEEccccCcHHHH
Confidence 35899999999999999999995 899888776532110 011221 12 35999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 142 SAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
..+++.|++.|++.+.+++.|.... +.+++...+++.++..+.
T Consensus 247 ~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id~iv~tnt 291 (330)
T PRK02812 247 CEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFEEVIVTNT 291 (330)
T ss_pred HHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCCEEEEeCC
Confidence 9999999999999999999887643 666776556777777665
No 61
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.50 E-value=6.8e-13 Score=110.78 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=84.0
Q ss_pred cEEEEeCCCChhhHHHHHHHh-CCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHH
Q 029741 64 SVVAGIEARGFVFGPSIALAI-GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (188)
Q Consensus 64 d~Iv~v~~gG~~~a~~lA~~l-~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~ 142 (188)
-+|++|+.||..+|..++..+ +.|+.++.|.+..... ...+.+ ....+|++|+||||+++||+|+.
T Consensus 153 ~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-----------~~~~~~--~~~v~g~~viivDDii~TG~Tl~ 219 (302)
T PLN02369 153 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNL--IGDVKGKVAIMVDDMIDTAGTIT 219 (302)
T ss_pred eEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-----------eeeEec--CCCCCCCEEEEEcCcccchHHHH
Confidence 389999999999999999999 7899888876532110 111222 22358999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeeCh--hhhhccCCCCeEEEEeccc
Q 029741 143 AAVRLLERMGAEVVECACVVGLP--EGQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 143 ~~~~~L~~~Ga~~v~v~~l~~~~--~~~~~l~~~~~~~l~~~~~ 184 (188)
++++.|++.|++++.+++.|... ++.+++....+..++..+.
T Consensus 220 ~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~t 263 (302)
T PLN02369 220 KGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQEVIVTNT 263 (302)
T ss_pred HHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999987653 3666776556777776655
No 62
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.49 E-value=5.5e-13 Score=115.38 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=87.7
Q ss_pred CcEEEEeCCCChhhHHHHHHHhC------CCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCccc
Q 029741 63 ISVVAGIEARGFVFGPSIALAIG------AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVA 136 (188)
Q Consensus 63 ~d~Iv~v~~gG~~~a~~lA~~l~------~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~ 136 (188)
..+||+|+.||...|..+|..|+ +++.++.|.+..+... ..+.+. + ..+|++|+|||||++
T Consensus 280 ~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v-----------~~~~lv-g-dV~Gk~vIIVDDIId 346 (439)
T PTZ00145 280 KPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEI-----------EKMDLV-G-NVYDSDVIIVDDMID 346 (439)
T ss_pred ccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCce-----------EEEecc-C-CCCCCEEEEEcceeC
Confidence 34899999999999999999997 7888887766432210 112221 3 359999999999999
Q ss_pred chHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 137 TGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 137 TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
||+|+.++++.|+++||+.|.+++.|+... +.+++...++..+++.+.
T Consensus 347 TG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~IvvTdT 396 (439)
T PTZ00145 347 TSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEVVVTDT 396 (439)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEEEEeCC
Confidence 999999999999999999999999998754 667777777888887776
No 63
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=2.6e-13 Score=120.11 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (188)
+....+++.|++... .+.|+|+++|.+|+++|..+|..+|+|+.. +.|++.....++...++.+....++.+.. ...
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~ 364 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREV 364 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccc
Confidence 666789999997664 368999999999999999999999999854 34443332222211111111111232211 223
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
.+||+||||||++|||+|+.++++.|+++|++.|.+..-.
T Consensus 365 ~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~s 404 (510)
T PRK07847 365 IRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISS 404 (510)
T ss_pred cCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5999999999999999999999999999999998876443
No 64
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.49 E-value=3.7e-13 Score=108.20 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=77.6
Q ss_pred cCHHHHHHHHHHHHHHHh------c-CCCcEEEEeC-------CCChhhHHHHH----HHhCCCeE--EEeecCCC-CCc
Q 029741 42 LDHKAFKDTVDIFVDRYR------D-MGISVVAGIE-------ARGFVFGPSIA----LAIGAKFV--PLRKPNKL-PGE 100 (188)
Q Consensus 42 ~~~~~~~~l~~~la~~~~------~-~~~d~Iv~v~-------~gG~~~a~~lA----~~l~~p~~--~~~k~~~~-~~~ 100 (188)
.++.+.+.+++.+++.+. . ..+|.|++|| .+|++++..+| ..+++|+. .+.+.+.. ...
T Consensus 85 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q~ 164 (227)
T PRK11595 85 RRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQH 164 (227)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCcc
Confidence 467777778888765432 1 2578999998 35898765555 45677763 22222211 111
Q ss_pred ccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeC
Q 029741 101 VISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~ 164 (188)
..+...+...-...+.+. + ..+|++|||||||+|||.|+.++++.|+++|+++|.+++++..
T Consensus 165 ~l~~~~R~~n~~~~f~~~-~-~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~~ 226 (227)
T PRK11595 165 FLSARLRKRNLKNAFRLE-L-PVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCRT 226 (227)
T ss_pred cCCHHHHhhhhhhhhccC-C-CCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEec
Confidence 011101100001123322 2 2589999999999999999999999999999999999998753
No 65
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=8.9e-14 Score=122.15 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeec-c-ceeEEEecCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEY-G-TDRLEMHVGA 121 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~ 121 (188)
+....+++.||+... .+.|+|+++|..|..+|..+|..+|+|+.. +.|++....++...+...+. + +..+... ..
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~-~~ 344 (475)
T PRK07631 267 TARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPV-RG 344 (475)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhc-cc
Confidence 566789999997664 368999999999999999999999999954 33333322222211111111 0 1123221 23
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~ 163 (188)
..+||+|+||||++|||+|+.++++.|+++||+.|.+.+-..
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 468999999999999999999999999999999988776544
No 66
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.48 E-value=8.9e-14 Score=119.26 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (188)
+....+++.|++.... +.|+|+|+|.+|.+.|...|+++|+|+.. +.|++....+++..++..+...-+++++. ...
T Consensus 267 ~~R~~mG~~La~e~~~-eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~ 345 (470)
T COG0034 267 EARKRMGEKLAEEIPV-EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREV 345 (470)
T ss_pred HHHHHHHHHHHHhCCc-cccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHH
Confidence 5667899999987753 67999999999999999999999999965 45666665555544333222222344432 234
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
.+||+|+||||.+-.|+|++..+++|+++||++|.+..-.
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 6999999999999999999999999999999999987544
No 67
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.46 E-value=9.6e-13 Score=110.54 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=81.5
Q ss_pred CcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHH
Q 029741 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (188)
Q Consensus 63 ~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~ 142 (188)
..+|++|+.||...+..++ +++|+.++.|.+. +. ...........+||+|+|||||++||+|+.
T Consensus 184 ~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~--g~------------~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~ 247 (326)
T PLN02297 184 NIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVRE--GD------------KRIVRIKEGNPAGRHVVIVDDLVQSGGTLI 247 (326)
T ss_pred CcEEEecCccHHHHHHHHc--CCCCEEEEEeEEC--CC------------ceEEEecccccCCCeEEEEecccCcHHHHH
Confidence 3489999999999887776 5889998887662 11 111111122369999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeeChh--hhhccCC------CCeEEEEeccc
Q 029741 143 AAVRLLERMGAEVVECACVVGLPE--GQRRLDG------KPLYILVEPRL 184 (188)
Q Consensus 143 ~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~------~~~~~l~~~~~ 184 (188)
.+++.|++.|++.+.+++.|.... +.+++.. .++..++..+.
T Consensus 248 ~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~iv~TdT 297 (326)
T PLN02297 248 ECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWITDS 297 (326)
T ss_pred HHHHHHHHCCCcEEEEEEECcccChhHHHHHHhcccccccCcCEEEEcCC
Confidence 999999999999999999998754 5556653 36777777665
No 68
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.43 E-value=7.3e-13 Score=102.27 Aligned_cols=119 Identities=22% Similarity=0.299 Sum_probs=80.0
Q ss_pred cEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCc---ccchhe------------eeec----cceeEEEecCCCCC
Q 029741 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGE---VISEAY------------VLEY----GTDRLEMHVGAIEP 124 (188)
Q Consensus 64 d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~---~~~~~~------------~~~~----~~~~~~l~~~~~~~ 124 (188)
-+||++..||...|+.+|+.|++.+..+.+.+..... ....+. .... ....+.+ .++ .+
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~v-VGD-V~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNV-VGD-VK 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEE-ES---T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEE-EEE-cc
Confidence 4899999999999999999999998887554321100 000000 0000 0001222 133 59
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCCeEEEEeccc
Q 029741 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 184 (188)
Q Consensus 125 Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~~~~l~~~~~ 184 (188)
||.++||||+++||.|+..+++.|++.||.+|++++.|+... +.++|+..+++.++..+.
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnT 144 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVVTNT 144 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEEETT
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEEecc
Confidence 999999999999999999999999999999999999999865 667787778988887765
No 69
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.24 E-value=1e-10 Score=92.97 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=96.2
Q ss_pred CCChhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHh------------------cCCCcEEEEeC
Q 029741 9 RGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYR------------------DMGISVVAGIE 70 (188)
Q Consensus 9 ~~~~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~------------------~~~~d~Iv~v~ 70 (188)
-+||.++.+-..+|+--. +...|.. .--.+.+.++.+....+. +.+.-+++++.
T Consensus 7 ~~~p~~~~~lt~lRd~~t---~~~~fr~-----~~~rl~~~l~~eal~~l~~~~~~v~tp~g~~~g~~~~~~~~vvV~Il 78 (209)
T PRK00129 7 VDHPLIQHKLTLLRDKNT---STKRFRE-----LLEELGRLLAYEATRDLPLEEVEIETPLGKTTGKRIAGKKLVIVPIL 78 (209)
T ss_pred cCCHHHHHHHHHHHCCCC---CHHHHHH-----HHHHHHHHHHHHHhcccceeEEEEECCCCcEEEEEecCCeEEEEEEe
Confidence 358999999999888754 1111111 122333344444333331 00123788999
Q ss_pred CCChhhHHHHHHHhC-CCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHH
Q 029741 71 ARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLE 149 (188)
Q Consensus 71 ~gG~~~a~~lA~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~ 149 (188)
++|.+++..++..++ .++.++...+.. .. .+........+...+|++|||+||+++||+|+..+++.|+
T Consensus 79 rgG~~~~~~l~~~l~~~~~~~i~~~r~~-~t---------~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~ 148 (209)
T PRK00129 79 RAGLGMVDGVLKLIPSARVGHIGLYRDE-ET---------LEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLK 148 (209)
T ss_pred CCCHHHHHHHHHhCCcCeeeeEEEEeCC-CC---------CCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHH
Confidence 999999999999997 455444332210 00 0111112222334589999999999999999999999999
Q ss_pred HcCCeEEEEEEEeeChhhhhccC
Q 029741 150 RMGAEVVECACVVGLPEGQRRLD 172 (188)
Q Consensus 150 ~~Ga~~v~v~~l~~~~~~~~~l~ 172 (188)
+.|++.+.+++++..+.+.+++.
T Consensus 149 ~~G~~~I~~~~ll~~~~gl~~l~ 171 (209)
T PRK00129 149 KRGAKNIKVLCLVAAPEGIKALE 171 (209)
T ss_pred HcCCCEEEEEEEecCHHHHHHHH
Confidence 99999999999999988777764
No 70
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.24 E-value=4e-11 Score=97.95 Aligned_cols=120 Identities=25% Similarity=0.298 Sum_probs=89.7
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEE
Q 029741 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLE 116 (188)
Q Consensus 37 ~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 116 (188)
+++++..|...+.+... ..+.+.-+|++|..||...+..+|+.|+..+..+.|.+.-..++ ...+.
T Consensus 142 Vdnly~~p~~l~~ir~~----~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~~v----------~~~m~ 207 (316)
T KOG1448|consen 142 VDNLYAEPAVLNYIREN----IPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKANEV----------DIRMV 207 (316)
T ss_pred chhhccchHHHHHHHhh----CCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhccccc----------ceEEE
Confidence 67777888665554443 44555558888999999999999999998777655443211100 01122
Q ss_pred EecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccC
Q 029741 117 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLD 172 (188)
Q Consensus 117 l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~ 172 (188)
+ .++ .+||.++||||+++|++|+..+++.|.+.||++|++++.|.... ..++++
T Consensus 208 L-VGD-v~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~ 263 (316)
T KOG1448|consen 208 L-VGD-VKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLN 263 (316)
T ss_pred E-Eec-cCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhh
Confidence 2 244 59999999999999999999999999999999999999998755 666665
No 71
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.21 E-value=4.5e-10 Score=87.85 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcC---CCcEEEEeCCCChhhHHHHHHHhCCCeEE--EeecCCCCCccc-----ch------he------
Q 029741 49 DTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVI-----SE------AY------ 106 (188)
Q Consensus 49 ~l~~~la~~~~~~---~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~--~~k~~~~~~~~~-----~~------~~------ 106 (188)
..++.|++.+.+. +.-+|.++++||++.|..+|..||.|+.. +||-.....+.. .+ ++
T Consensus 9 dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~ 88 (220)
T COG1926 9 DAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSL 88 (220)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhc
Confidence 3444455444432 33378899999999999999999999843 465443211100 00 00
Q ss_pred eeec---------cceeEE-----EecC---CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhh
Q 029741 107 VLEY---------GTDRLE-----MHVG---AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQR 169 (188)
Q Consensus 107 ~~~~---------~~~~~~-----l~~~---~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~ 169 (188)
..+. ...++. ...+ ...+|++|+||||-+.||.||..+++.+++.+++.+.+++-+...+...
T Consensus 89 ~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~ 168 (220)
T COG1926 89 GIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAA 168 (220)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHH
Confidence 0000 000000 0111 1358999999999999999999999999999999999999998887666
Q ss_pred ccC
Q 029741 170 RLD 172 (188)
Q Consensus 170 ~l~ 172 (188)
.|.
T Consensus 169 ~l~ 171 (220)
T COG1926 169 ELE 171 (220)
T ss_pred HHH
Confidence 664
No 72
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.20 E-value=2.2e-10 Score=90.95 Aligned_cols=145 Identities=19% Similarity=0.149 Sum_probs=94.3
Q ss_pred CChhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhc------------------CCCcEEEEeCC
Q 029741 10 GDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRD------------------MGISVVAGIEA 71 (188)
Q Consensus 10 ~~~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~------------------~~~d~Iv~v~~ 71 (188)
.||.++++-..+|+.-. ++..|.. .--.+.+.++.+....+.- .+.-+++++.+
T Consensus 6 ~~p~~~~~lt~lRd~~t---~~~~Fr~-----~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~~~~~~~~~~~i~~V~ILr 77 (207)
T TIGR01091 6 EHPLIKHKLTLLRDKNT---DTKEFRE-----LLRELGRLLAYEATRDLELEEVEVETPLGETEGGRILGKKIVLVPILR 77 (207)
T ss_pred CCHHHHHHHHHHHCCCC---CHHHHHH-----HHHHHHHHHHHHHhccCCceeEEEECCCCcEEEeEecCCcEEEEEEeC
Confidence 48999999888888754 1111211 1122333344433332210 02247888999
Q ss_pred CChhhHHHHHHHhC-CCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHH
Q 029741 72 RGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLER 150 (188)
Q Consensus 72 gG~~~a~~lA~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~ 150 (188)
+|.+++..++..+. .++.++...+.. .. .+........+...+|++|||+||+++||+|+..+++.|++
T Consensus 78 gg~~~~~~l~~~l~~~~v~~i~~~r~~-~t---------~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 78 AGLGMVDGVLKLIPEAKVGHVGAYRNE-ET---------LKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcHHHHHHHHHhCCcCceeEEEEEeCC-CC---------CCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 99999999999986 344444332210 00 01111122223346899999999999999999999999999
Q ss_pred cCCeEEEEEEEeeChhhhhccC
Q 029741 151 MGAEVVECACVVGLPEGQRRLD 172 (188)
Q Consensus 151 ~Ga~~v~v~~l~~~~~~~~~l~ 172 (188)
.|++.+.+++++..+.+.+++.
T Consensus 148 ~G~~~I~v~~ll~~~~gl~~l~ 169 (207)
T TIGR01091 148 RGAKKIKVLSIVAAPEGIEAVE 169 (207)
T ss_pred cCCCEEEEEEEecCHHHHHHHH
Confidence 9999999999999988777664
No 73
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.16 E-value=6.2e-11 Score=99.70 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE-EeecCCCCCcccchheeeeccceeEEEec-CCC
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (188)
......++.||. ....+.|+|+++|.+|...|...|...|+|+.- +.|++....+++..+++.+...-..++.. ...
T Consensus 275 ~~R~~~G~~LA~-e~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~ 353 (474)
T KOG0572|consen 275 TVRLQCGEQLAT-EAPVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQN 353 (474)
T ss_pred HHHHHHHhHhhh-cCCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccchhh
Confidence 444567777765 333578999999999999999999999999954 34555555555544333222211222221 234
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
..||+|+||||.|..|+|+..++++|+++||+.|.....
T Consensus 354 ~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riA 392 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIA 392 (474)
T ss_pred cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEec
Confidence 699999999999999999999999999999999987643
No 74
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.15 E-value=8.1e-10 Score=83.17 Aligned_cols=120 Identities=22% Similarity=0.309 Sum_probs=76.0
Q ss_pred hcCHHHHHHHH----HHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhC------CCeEEEeecCCCCCcccchheeeec
Q 029741 41 LLDHKAFKDTV----DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIG------AKFVPLRKPNKLPGEVISEAYVLEY 110 (188)
Q Consensus 41 l~~~~~~~~l~----~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~------~p~~~~~k~~~~~~~~~~~~~~~~~ 110 (188)
+.|++.++... .++.++-...+--+++|+..+|+++|..++..++ +|+-.+--+ +++..++...
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt------~yRDDl~~~~ 79 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDIT------LYRDDLTQKG 79 (179)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeE------EeechhhhcC
Confidence 34555555444 4444443333333889999999999999999873 454322100 0000000000
Q ss_pred -cceeEEE-ecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcC-CeEEEEEEEeeChh
Q 029741 111 -GTDRLEM-HVGAIEPGERALVIDDLVATGGTLSAAVRLLERMG-AEVVECACVVGLPE 166 (188)
Q Consensus 111 -~~~~~~l-~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~G-a~~v~v~~l~~~~~ 166 (188)
......- .......||+|+|||||+.||+|++++++.|...| +..+..+++++++.
T Consensus 80 ~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGH 138 (179)
T COG2065 80 PLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGH 138 (179)
T ss_pred ccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCC
Confidence 0000000 00223689999999999999999999999999999 68899999999864
No 75
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.06 E-value=2.2e-09 Score=81.40 Aligned_cols=141 Identities=17% Similarity=0.243 Sum_probs=91.3
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHHhcC---CCcEEEEeCCCChhhHHHHHHHhC-------CCe--EEEeecCCCCCc
Q 029741 33 MFQDITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIG-------AKF--VPLRKPNKLPGE 100 (188)
Q Consensus 33 ~~~d~~~ll~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~gG~~~a~~lA~~l~-------~p~--~~~~k~~~~~~~ 100 (188)
.+-|+..++.-..++..-.+.||+.+.+. .+-+++|+..||+.|-+.+-+.+. .|+ .++|-+.
T Consensus 28 y~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kS----- 102 (216)
T KOG3367|consen 28 YTGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKS----- 102 (216)
T ss_pred ecccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhh-----
Confidence 34566666666666677777777666543 344789999999998777777753 333 1233221
Q ss_pred ccchheeeeccceeEEEec-CC--CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeE
Q 029741 101 VISEAYVLEYGTDRLEMHV-GA--IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLY 177 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~-~~--~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~ 177 (188)
|.....+..+.+-. +. ...||+|||||||++||+||..++..+++.+++.+.++++..++..+ ...--|-+
T Consensus 103 -----Y~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt~R-~v~yk~dy 176 (216)
T KOG3367|consen 103 -----YCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRTRR-SVGYKPDY 176 (216)
T ss_pred -----hcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccccc-ccCCCccc
Confidence 11111112222211 11 25899999999999999999999999999999999999999887422 22212344
Q ss_pred EEEeccc
Q 029741 178 ILVEPRL 184 (188)
Q Consensus 178 ~l~~~~~ 184 (188)
+-+++++
T Consensus 177 ~gFEiPd 183 (216)
T KOG3367|consen 177 VGFEIPD 183 (216)
T ss_pred ccccCCc
Confidence 4445444
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.99 E-value=1.5e-08 Score=78.57 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=105.7
Q ss_pred CCCCceEEechhhhc-----CHHHHHHHHHHHHHHHhcC--CCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecC-CCCC
Q 029741 28 PIPGIMFQDITTLLL-----DHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPN-KLPG 99 (188)
Q Consensus 28 ~~~g~~~~d~~~ll~-----~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~-~~~~ 99 (188)
|+.+++| ++.+++ +|.........|+.++... ++.+++|.++.+.-+++.+++.++-...|+..++ ..++
T Consensus 14 pKR~fLf--VSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~ 91 (191)
T PF15609_consen 14 PKRAFLF--VSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPG 91 (191)
T ss_pred CCceeEE--EecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCC
Confidence 4556655 555554 8999999999999988764 6679999999999999999999985445555443 2333
Q ss_pred cccchheeeeccce---eEEEec-CCCCCCCEEEEEcCcccchHHHHHHHHHHHHc-CCeEEEEEEEeeChh--hhh---
Q 029741 100 EVISEAYVLEYGTD---RLEMHV-GAIEPGERALVIDDLVATGGTLSAAVRLLERM-GAEVVECACVVGLPE--GQR--- 169 (188)
Q Consensus 100 ~~~~~~~~~~~~~~---~~~l~~-~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~-Ga~~v~v~~l~~~~~--~~~--- 169 (188)
....-.|..++++. .++... +.+...+.+++|||-+|||+|+..+++.|++. ..+.+.++++.+... .+.
T Consensus 92 ~~~~~~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~~~ 171 (191)
T PF15609_consen 92 VPPLLEFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRARFE 171 (191)
T ss_pred CccceeeeccccccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHHHH
Confidence 11112244444422 233221 12346779999999999999999999999875 457777888888743 222
Q ss_pred ccC---CCCeEEEEeccc
Q 029741 170 RLD---GKPLYILVEPRL 184 (188)
Q Consensus 170 ~l~---~~~~~~l~~~~~ 184 (188)
.+. |++++.+.-+.+
T Consensus 172 ~~~~~lgi~i~~vsL~~G 189 (191)
T PF15609_consen 172 ALAEELGIPIDVVSLLSG 189 (191)
T ss_pred HHHHHcCCcEEEEEeecc
Confidence 222 788777665544
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=98.38 E-value=9.6e-06 Score=65.86 Aligned_cols=49 Identities=39% Similarity=0.674 Sum_probs=43.9
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCe--EEEEEEEeeChhhhhccC
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAE--VVECACVVGLPEGQRRLD 172 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~--~v~v~~l~~~~~~~~~l~ 172 (188)
++++|+|+||++.||+|+..+++.|++.|++ .+.+++++..++|.+++.
T Consensus 156 ~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~~Gl~~i~ 206 (244)
T PLN02541 156 EGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPPALKKLS 206 (244)
T ss_pred CCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECHHHHHHHH
Confidence 5789999999999999999999999999987 788888988888776663
No 78
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.18 E-value=1.2e-05 Score=63.41 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=71.2
Q ss_pred EEEEeCCCChhhHHHHHHHhC-CCeEEE--eecCCCCCcccchheeeeccceeEEEe-cCCCCCCCEEEEEcCcccchHH
Q 029741 65 VVAGIEARGFVFGPSIALAIG-AKFVPL--RKPNKLPGEVISEAYVLEYGTDRLEMH-VGAIEPGERALVIDDLVATGGT 140 (188)
Q Consensus 65 ~Iv~v~~gG~~~a~~lA~~l~-~p~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~Gk~VLIVDDvi~TG~T 140 (188)
++|++.+.|..+...+...+- .+.-.+ .+.... .+...+.. .+...+++.|+|+|-++.||+|
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet-------------~~p~~yy~KLP~~~~~~~viv~DPMLATG~s 139 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEET-------------LEPVLYYEKLPEDIDERTVIVLDPMLATGGS 139 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecCcc-------------CceehhHHhCCCcccCCeEEEECchhhccHh
Confidence 567888999999998888752 111111 111100 01111111 1334689999999999999999
Q ss_pred HHHHHHHHHHc-CCeEEEEEEEeeChhhhhccC----CCCeEE
Q 029741 141 LSAAVRLLERM-GAEVVECACVVGLPEGQRRLD----GKPLYI 178 (188)
Q Consensus 141 l~~~~~~L~~~-Ga~~v~v~~l~~~~~~~~~l~----~~~~~~ 178 (188)
+..+++.|++. |++++.+++++..+++.+++. +++++.
T Consensus 140 ~i~ai~~L~~~G~~~~I~~v~~vAapeGi~~v~~~~p~v~I~t 182 (210)
T COG0035 140 AIAAIDLLKKRGGPKNIKVVSLVAAPEGIKAVEKAHPDVEIYT 182 (210)
T ss_pred HHHHHHHHHHhCCCceEEEEEEEecHHHHHHHHHhCCCCeEEE
Confidence 99999999999 899999999999999777764 555554
No 79
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.16 E-value=5.7e-05 Score=59.92 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=68.0
Q ss_pred cEEEEeCCCChhhHHHHHHHh-CCCeEEE--eecCCCCCcccchheeeeccceeEEE-ecCCCCCCCEEEEEcCcccchH
Q 029741 64 SVVAGIEARGFVFGPSIALAI-GAKFVPL--RKPNKLPGEVISEAYVLEYGTDRLEM-HVGAIEPGERALVIDDLVATGG 139 (188)
Q Consensus 64 d~Iv~v~~gG~~~a~~lA~~l-~~p~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~Gk~VLIVDDvi~TG~ 139 (188)
-++|++.++|..+...+...+ +.++..+ .+.... .+..++. ..+...++++|+|+|-++.||+
T Consensus 69 i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t-------------~~p~~~y~~LP~~i~~~~VillDpmlaTG~ 135 (207)
T PF14681_consen 69 ICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEET-------------LEPVLYYNKLPEDIENRKVILLDPMLATGG 135 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTT-------------SSEEEEEEE--TTGTTSEEEEEESEESSSH
T ss_pred EEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCc-------------cceeeeHhhCCCCccCCEEEEEeccccchh
Confidence 378889999999998888876 3444332 221110 1111221 1233348999999999999999
Q ss_pred HHHHHHHHHHHcCC--eEEEEEEEeeChhhhhccC
Q 029741 140 TLSAAVRLLERMGA--EVVECACVVGLPEGQRRLD 172 (188)
Q Consensus 140 Tl~~~~~~L~~~Ga--~~v~v~~l~~~~~~~~~l~ 172 (188)
|+..+++.|++.|. +.+.+++++..+++.+++.
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~ 170 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVSVIASPEGLERLL 170 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcceEEEEEEEecHHHHHHHH
Confidence 99999999999886 7888888888887666653
No 80
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=97.99 E-value=0.0002 Score=57.67 Aligned_cols=141 Identities=19% Similarity=0.195 Sum_probs=93.9
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEeecCCC-----------CCcccchh
Q 029741 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKL-----------PGEVISEA 105 (188)
Q Consensus 37 ~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~-----------~~~~~~~~ 105 (188)
++++-..|.++..+ .+.+.+.+..+||+-..+...-|+..|+.|...+..+.-+.+. +..+...+
T Consensus 146 vdnlraspfllqyi----qe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t 221 (354)
T KOG1503|consen 146 VDNLRASPFLLQYI----QEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTAT 221 (354)
T ss_pred ccccccCHHHHHHH----HHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCccccc
Confidence 56666778665544 4456666667888888888889999999998777665322111 10111000
Q ss_pred e--eee------ccceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh--hhhccCCCC
Q 029741 106 Y--VLE------YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKP 175 (188)
Q Consensus 106 ~--~~~------~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~--~~~~l~~~~ 175 (188)
. +.+ +.+..+.+. + ...|+-.++|||+++.-.+..++++.|++.||-++++.+.|+.-+ +-..++..|
T Consensus 222 ~~~~~~lp~~~~k~kppltvv-g-dvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~ 299 (354)
T KOG1503|consen 222 THPSLELPAQISKEKPPLTVV-G-DVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESP 299 (354)
T ss_pred cCccccCchhhcccCCCeEEE-e-ccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcCC
Confidence 0 000 001112221 2 258999999999999999999999999999999999999999754 444566777
Q ss_pred eEEEEecc
Q 029741 176 LYILVEPR 183 (188)
Q Consensus 176 ~~~l~~~~ 183 (188)
++.++-..
T Consensus 300 idevvvtn 307 (354)
T KOG1503|consen 300 IDEVVVTN 307 (354)
T ss_pred CceEEEec
Confidence 77776543
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=96.17 E-value=0.1 Score=42.91 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
.+||.+|++|||-.||++=..+.+.+++.|++....+..
T Consensus 136 l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~yly 174 (274)
T PF15610_consen 136 LSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIYLY 174 (274)
T ss_pred hCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEEEE
Confidence 599999999999999999999999999999877444433
No 82
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=93.89 E-value=0.35 Score=38.15 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=46.7
Q ss_pred CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCC--eEEEEEEEeeChhhhhcc-CCCCeEEEEec
Q 029741 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGA--EVVECACVVGLPEGQRRL-DGKPLYILVEP 182 (188)
Q Consensus 120 ~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga--~~v~v~~l~~~~~~~~~l-~~~~~~~l~~~ 182 (188)
....--++||+.=-++.||+|+..+++.|+++|. ..+....++-.+-+.+.+ +..|-..+++-
T Consensus 184 ppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP~gak~i~~~fP~itilts 249 (267)
T KOG1017|consen 184 PPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITPTGAKNITRKFPYITILTS 249 (267)
T ss_pred CCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecchhhHHHHHhCCeEEEEee
Confidence 3345788999999999999999999999999996 456666777666644443 34555555543
No 83
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=93.82 E-value=1.8 Score=31.14 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc--hH--HHHHHHH
Q 029741 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GG--TLSAAVR 146 (188)
Q Consensus 71 ~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T--G~--Tl~~~~~ 146 (188)
.+.-.+|..+|..||.+...+.-.+.. .|+..+.+ ....+|++|+||-+.... -. -+.-+++
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~------------dGE~~v~i--~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~ 72 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFP------------DGETYVRI--PESVRGKDVFIIQSTSPPVNDNLMELLLLID 72 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-T------------TS-EEEEE--SS--TTSEEEEE---SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcC------------CCCEEEEe--cccccCCceEEEEecCCchhHHHHHHHHHHH
Confidence 344689999999999988664332221 22222333 334689999999988875 22 3455678
Q ss_pred HHHHcCCeEEEEEE
Q 029741 147 LLERMGAEVVECAC 160 (188)
Q Consensus 147 ~L~~~Ga~~v~v~~ 160 (188)
.++.+||+.|.++.
T Consensus 73 a~r~~~a~~i~~Vi 86 (116)
T PF13793_consen 73 ALRRAGAKRITLVI 86 (116)
T ss_dssp HHHHTTBSEEEEEE
T ss_pred HHHHcCCcEEEEec
Confidence 88889998876654
No 84
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=92.47 E-value=0.72 Score=37.54 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=80.9
Q ss_pred CCceEEechhhhcCHHHHHHHHHHHHHHHhcC--CCcE--EEEeCCCC-hhhHHHHHHHhCCCeEEEeecCCCCCcccch
Q 029741 30 PGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISV--VAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISE 104 (188)
Q Consensus 30 ~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~--~~d~--Iv~v~~gG-~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~ 104 (188)
+...|.|+.. ...+..+..+++.++..+-.. .+|+ +++++..| ...+...|+..+++.+.-+...+ -+-+.
T Consensus 61 h~di~~df~~-~~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~---g~~rk 136 (261)
T KOG1377|consen 61 HSDIFFDFSL-FNSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIK---GLNRK 136 (261)
T ss_pred cCceeecccc-cccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHH---HHhhh
Confidence 3456666655 347888889999988777433 5888 99999877 44556667777765443210000 00000
Q ss_pred heeeecc-ceeEEEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh-----------hhhccC
Q 029741 105 AYVLEYG-TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-----------GQRRLD 172 (188)
Q Consensus 105 ~~~~~~~-~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~-----------~~~~l~ 172 (188)
.-...+ ..-+.+ ...++|.+|+.||+.++|.-+++. .+.-.-..+.+..+..++.+ +.+.|.
T Consensus 137 -~~k~~~egG~lll---Aems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq~l~~tpgv~~d~~~d~lg 210 (261)
T KOG1377|consen 137 -LLKDHGEGGVLLL---AELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQELIMTPGVELDAAGDNLG 210 (261)
T ss_pred -ccccCCCCceEEE---EEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHHhhccCCCCccchhhcchh
Confidence 000011 111221 124788999999988887777776 33333445555555555441 212232
Q ss_pred ---CCCeEEEEeccc
Q 029741 173 ---GKPLYILVEPRL 184 (188)
Q Consensus 173 ---~~~~~~l~~~~~ 184 (188)
+.|.+++.++..
T Consensus 211 qqy~~p~e~I~~~~~ 225 (261)
T KOG1377|consen 211 QQYRLPVEVIVSLGS 225 (261)
T ss_pred hhhcCcHHhheecCc
Confidence 667777775544
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=91.45 E-value=3.7 Score=34.95 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=53.0
Q ss_pred EEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc-hHH---H
Q 029741 66 VAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---L 141 (188)
Q Consensus 66 Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T-G~T---l 141 (188)
++-...+.-.+|..+|..||++...+..++..++ + .++......+|++|+||-..... ... +
T Consensus 23 ~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDG------------E--~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eL 88 (330)
T PRK02812 23 RLFSGSSNPALAQEVARYLGMDLGPMIRKRFADG------------E--LYVQIQESIRGCDVYLIQPTCAPVNDHLMEL 88 (330)
T ss_pred EEEECCCCHHHHHHHHHHhCCCceeeEEEECCCC------------C--EEEEeCCCCCCCEEEEECCCCCCccHHHHHH
Confidence 3333456678999999999998765443332222 2 22222333589999999985433 222 4
Q ss_pred HHHHHHHHHcCCeEEEEEEEe
Q 029741 142 SAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
..+++.++.+|++.+.++.-.
T Consensus 89 ll~~~alr~~ga~ri~~ViPY 109 (330)
T PRK02812 89 LIMVDACRRASARQITAVIPY 109 (330)
T ss_pred HHHHHHHHHhCCceEEEEEec
Confidence 556778889999987765544
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=90.66 E-value=4.5 Score=35.79 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=52.0
Q ss_pred EEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc-hH---H
Q 029741 65 VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GG---T 140 (188)
Q Consensus 65 ~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T-G~---T 140 (188)
.++-...+.-.+|..||..||+++..+..++..+++ +++.......|+.|+||-..-.. -. -
T Consensus 120 m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE--------------~~Vri~e~VrG~dV~IVqS~~~pvNd~LmE 185 (439)
T PTZ00145 120 AILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGE--------------VSMQFLESIRGKDVYIIQPTCPPVNENLIE 185 (439)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCC--------------EEEEECCCcCCCeEEEEecCCCCCcHHHHH
Confidence 344444556789999999999987665433322222 22222233589999998875432 11 2
Q ss_pred HHHHHHHHHHcCCeEEEEEEEe
Q 029741 141 LSAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 141 l~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
+.-+++.++.+||+.|.++...
T Consensus 186 LLllidAlr~agAkrItlViPY 207 (439)
T PTZ00145 186 LLLMISTCRRASAKKITAVIPY 207 (439)
T ss_pred HHHHHHHHHHhccCeEEEEeec
Confidence 3445677788899887766544
No 87
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=89.96 E-value=6.5 Score=32.96 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=50.2
Q ss_pred CCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchH---HHHHHHHH
Q 029741 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRL 147 (188)
Q Consensus 71 ~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~---Tl~~~~~~ 147 (188)
.+.-.+|..+|..||+|+..+...+..+ |+..+.+ ....+|+.|+||-.....-. -+.-+++.
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F~d------------GE~~v~i--~~~v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRFPD------------GESYVRL--DSPVAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------CCEEEEE--CCCCCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 4456899999999999986554333222 2222333 23358999999988654222 24456677
Q ss_pred HHHcCCeEEEEEEEe
Q 029741 148 LERMGAEVVECACVV 162 (188)
Q Consensus 148 L~~~Ga~~v~v~~l~ 162 (188)
|+++||+.+.++...
T Consensus 75 lr~~~a~~i~~ViPY 89 (301)
T PRK07199 75 ARELGARRVGLVAPY 89 (301)
T ss_pred HHHcCCCeEEEEeec
Confidence 889999887765443
No 88
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=89.73 E-value=4.2 Score=34.43 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=45.9
Q ss_pred CCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchH----HHHHHH
Q 029741 70 EARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----TLSAAV 145 (188)
Q Consensus 70 ~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~----Tl~~~~ 145 (188)
..+.-.+|..+|..||.|+..+..++..+++ ..+.+ .....|++|+||-+.-.... -+..++
T Consensus 12 g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE------------~~v~i--~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~ 77 (319)
T PRK04923 12 GNANKPLAQSICKELGVRMGKALVTRFSDGE------------VQVEI--EESVRRQEVFVIQPTCAPSAENLMELLVLI 77 (319)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEECCCCC------------EEEEE--CCCcCCCeEEEEecCCCCCchHHHHHHHHH
Confidence 3445689999999999997655433322222 12222 23347888888855332211 234456
Q ss_pred HHHHHcCCeEEEEEEE
Q 029741 146 RLLERMGAEVVECACV 161 (188)
Q Consensus 146 ~~L~~~Ga~~v~v~~l 161 (188)
+.++.+|++.+.++..
T Consensus 78 ~alr~~~a~~i~~ViP 93 (319)
T PRK04923 78 DALKRASAASVTAVIP 93 (319)
T ss_pred HHHHHcCCcEEEEEee
Confidence 6777888877665443
No 89
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=89.64 E-value=7 Score=33.30 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=51.4
Q ss_pred EEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc-hHH---H
Q 029741 66 VAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---L 141 (188)
Q Consensus 66 Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T-G~T---l 141 (188)
++-...+.-.+|..+|..||+|...+..++..+++ .++......+|+.|+||-+.... -.. +
T Consensus 11 ~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE--------------~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eL 76 (332)
T PRK00553 11 VIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGE--------------TYIRFDESVRNKDVVIFQSTCSPVNDSLMEL 76 (332)
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCC--------------EEEEECCCCCCCEEEEEcCCCCCCchHHHHH
Confidence 33334455689999999999988665433322222 22222233589999999876432 112 4
Q ss_pred HHHHHHHHHcCCeEEEEEEEe
Q 029741 142 SAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
..++..++.+||+.+.++...
T Consensus 77 ll~~~alr~~~a~~i~~ViPY 97 (332)
T PRK00553 77 LIAIDALKRGSAKSITAILPY 97 (332)
T ss_pred HHHHHHHHHcCCCeEEEEeec
Confidence 456677788899877665544
No 90
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=89.59 E-value=6.3 Score=33.17 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc-hHH---HHHHHH
Q 029741 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---LSAAVR 146 (188)
Q Consensus 71 ~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T-G~T---l~~~~~ 146 (188)
.+.-.+|..+|..||.|...+..++..++ + .++.......|++|+||-+.-.. -.. +..+++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~FpdG------------E--~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~ 72 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGRFSDG------------E--ISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMID 72 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCC------------C--EEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 44468999999999998765433322222 2 22222333589999999765322 122 456677
Q ss_pred HHHHcCCeEEEEEEEe
Q 029741 147 LLERMGAEVVECACVV 162 (188)
Q Consensus 147 ~L~~~Ga~~v~v~~l~ 162 (188)
.++++|++.+.++...
T Consensus 73 alr~~ga~~i~lViPY 88 (309)
T PRK01259 73 ALKRASAGRITAVIPY 88 (309)
T ss_pred HHHHcCCceEEEEeec
Confidence 8889999877655443
No 91
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=89.32 E-value=4.2 Score=34.13 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=47.5
Q ss_pred CCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEE-cCcccc-hH---HHHHHH
Q 029741 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVI-DDLVAT-GG---TLSAAV 145 (188)
Q Consensus 71 ~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIV-DDvi~T-G~---Tl~~~~ 145 (188)
.+.-.+|..+|..||.|...+..++-.++ +..+.+ .....|+.|+|| -..... -. -+..++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~FpdG------------E~~v~i--~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~ 72 (308)
T TIGR01251 7 SSNQELAQKVAKNLGLPLGDVEVKRFPDG------------ELYVRI--NESVRGKDVFIIQQSTSAPVNDNLMELLIMI 72 (308)
T ss_pred CCCHHHHHHHHHHhCCeeeeeEEEECCCC------------CEEEEE--CCCCCCCeEEEEeCCCCCCccHHHHHHHHHH
Confidence 34468999999999998876543332222 212222 233588999888 543311 11 245667
Q ss_pred HHHHHcCCeEEEEEEEe
Q 029741 146 RLLERMGAEVVECACVV 162 (188)
Q Consensus 146 ~~L~~~Ga~~v~v~~l~ 162 (188)
+.++.+|++.+.++.-.
T Consensus 73 ~a~r~~ga~~i~~v~PY 89 (308)
T TIGR01251 73 DALKRASAKSITAVIPY 89 (308)
T ss_pred HHHHHcCCCeEEEEEEe
Confidence 78888999877655443
No 92
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.93 E-value=8.4 Score=32.59 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc----hHHHHHHH
Q 029741 70 EARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT----GGTLSAAV 145 (188)
Q Consensus 70 ~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T----G~Tl~~~~ 145 (188)
..+.-.+|..+|..||+++..+..++..++ +..+.+ ....+|+.|+||-..... =--+.-++
T Consensus 11 ~~~~~~la~~ia~~lg~~l~~~~~~~FpdG------------E~~v~i--~~~vrg~dV~iv~s~~~~~nd~lmelll~~ 76 (320)
T PRK02269 11 LSSNKELAEKVAQEIGIELGKSSVRQFSDG------------EIQVNI--EESIRGHHVFILQSTSSPVNDNLMEILIMV 76 (320)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEECCCC------------CEEEEE--CCCCCCCEEEEEecCCCCccchHHHHHHHH
Confidence 344468999999999998765543332222 212222 233589999999775431 12255667
Q ss_pred HHHHHcCCeEEEEEEEe
Q 029741 146 RLLERMGAEVVECACVV 162 (188)
Q Consensus 146 ~~L~~~Ga~~v~v~~l~ 162 (188)
+.|+.+||+.+.++...
T Consensus 77 ~alr~~~a~~i~~V~PY 93 (320)
T PRK02269 77 DALKRASAESINVVMPY 93 (320)
T ss_pred HHHHHhCCCeEEEEEec
Confidence 88889999887665544
No 93
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.83 E-value=6.3 Score=32.72 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchH---HHHHHHHH
Q 029741 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRL 147 (188)
Q Consensus 71 ~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~---Tl~~~~~~ 147 (188)
.+.-.+|..+|..||+|+..+..++..++ +..+.+ ....+|++|+|+-..-.-.. -+..+++.
T Consensus 6 ~~~~~la~~ia~~l~~~~~~~~~~~FpdG------------E~~v~i--~~~v~g~~v~i~~~~~~~~d~l~ell~~~~a 71 (285)
T PRK00934 6 SASQLLASEVARLLNTELALVETKRFPDG------------ELYVRI--LGEIDGEDVVIISTTYPQDENLVELLLLIDA 71 (285)
T ss_pred CCCHHHHHHHHHHHCCceEeeEEEECCCC------------CEEEEE--CCCcCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34458999999999999876544432222 222333 23358999988876433222 24456778
Q ss_pred HHHcCCeEEEEEEE
Q 029741 148 LERMGAEVVECACV 161 (188)
Q Consensus 148 L~~~Ga~~v~v~~l 161 (188)
++.+|++.+.++..
T Consensus 72 lr~~ga~~i~~v~P 85 (285)
T PRK00934 72 LRDEGAKSITLVIP 85 (285)
T ss_pred HHHcCCCeEEEEec
Confidence 88999988765543
No 94
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=88.47 E-value=5.6 Score=33.36 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=46.5
Q ss_pred hhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc--hHH--HHHHHHHHHH
Q 029741 75 VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GGT--LSAAVRLLER 150 (188)
Q Consensus 75 ~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T--G~T--l~~~~~~L~~ 150 (188)
.+|..+|..||+|+..+..++..+++ ..+.+ ....+|++|+||-..... -.. +..+++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~FpdGE------------~~v~i--~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFADGE------------IYVQL--QESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCCCC------------EEEEE--CCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 47899999999988665433322222 22222 233589999999886522 122 4556778889
Q ss_pred cCCeEEEEEEEe
Q 029741 151 MGAEVVECACVV 162 (188)
Q Consensus 151 ~Ga~~v~v~~l~ 162 (188)
+|++.+.++...
T Consensus 68 ~~a~~i~~ViPY 79 (302)
T PLN02369 68 ASAKRITAVIPY 79 (302)
T ss_pred cCCCeEEEEeec
Confidence 999877655443
No 95
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=86.73 E-value=7.2 Score=32.76 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=46.1
Q ss_pred hHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc-hHH---HHHHHHHHHHc
Q 029741 76 FGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---LSAAVRLLERM 151 (188)
Q Consensus 76 ~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T-G~T---l~~~~~~L~~~ 151 (188)
+|..+|..||+++..+..++..+++ +++......+|++|+||--.... ... +.-++..++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DGE--------------~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANGE--------------IYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCCC--------------EEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 4788999999987654433322222 22222333589999998775442 222 45677888899
Q ss_pred CCeEEEEEEEe
Q 029741 152 GAEVVECACVV 162 (188)
Q Consensus 152 Ga~~v~v~~l~ 162 (188)
||+.+.++...
T Consensus 67 ~a~~i~~ViPY 77 (304)
T PRK03092 67 SAKRITVVLPF 77 (304)
T ss_pred CCCeEEEEEec
Confidence 99987765544
No 96
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=85.99 E-value=17 Score=30.76 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=50.0
Q ss_pred EEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc-hHH---H
Q 029741 66 VAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---L 141 (188)
Q Consensus 66 Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T-G~T---l 141 (188)
++-...+.-.+|..+|..||++...+..++..+++ ..+.+ .....|+.|+||-..-.. -.. +
T Consensus 11 ~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE------------~~v~i--~~~v~g~dV~ii~s~~~~~nd~l~eL 76 (323)
T PRK02458 11 KLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGE------------IMINI--EESVRGDDIYIIQSTSFPVNDHLWEL 76 (323)
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCC------------EEEEe--cCCcCCCeEEEEecCCCCCchHHHHH
Confidence 33334555789999999999998655433322222 22222 233588999998764322 122 3
Q ss_pred HHHHHHHHHcCCeEEEEEEEe
Q 029741 142 SAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 142 ~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
..+++.++++||+.+.++...
T Consensus 77 ll~~~alr~~~a~~i~lViPY 97 (323)
T PRK02458 77 LIMIDACKRASANTVNVVLPY 97 (323)
T ss_pred HHHHHHHHHcCCceEEEEEec
Confidence 445667788999877665544
No 97
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=83.77 E-value=8.6 Score=32.51 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCChhhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchH----HHHHHHH
Q 029741 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----TLSAAVR 146 (188)
Q Consensus 71 ~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~----Tl~~~~~ 146 (188)
.+.-.+|..+|..|+.|+..+..++..++ + +++......+|+.|.|+...-.... -+.-+++
T Consensus 11 ~s~~~La~~ia~~l~~~l~~~~~~rF~DG------------E--~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~id 76 (314)
T COG0462 11 SSNPELAEKIAKRLGIPLGKVEVKRFPDG------------E--IYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMID 76 (314)
T ss_pred CCCHHHHHHHHHHhCCCcccceeEEcCCC------------c--EEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 44457999999999999876543332222 2 2222233469999998766555333 2445677
Q ss_pred HHHHcCCeEEEEEEEe
Q 029741 147 LLERMGAEVVECACVV 162 (188)
Q Consensus 147 ~L~~~Ga~~v~v~~l~ 162 (188)
.++.+||+.|.++...
T Consensus 77 A~k~asA~~It~ViPY 92 (314)
T COG0462 77 ALKRASAKRITAVIPY 92 (314)
T ss_pred HHHhcCCceEEEEeec
Confidence 8889999988876554
No 98
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=78.02 E-value=44 Score=29.09 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=27.9
Q ss_pred CCCCCCEEEEEcCccc---------------chHHHH---HHHHHHHHcCCeEEEEEEEe
Q 029741 121 AIEPGERALVIDDLVA---------------TGGTLS---AAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 121 ~~~~Gk~VLIVDDvi~---------------TG~Tl~---~~~~~L~~~Ga~~v~v~~l~ 162 (188)
...+|+.|+||-+... .-..+. .+++.++ +||+.+.++...
T Consensus 73 ~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY 131 (382)
T PRK06827 73 ESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPF 131 (382)
T ss_pred CCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeec
Confidence 3459999999998642 122233 3778888 999887765544
No 99
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=72.33 E-value=61 Score=27.62 Aligned_cols=85 Identities=8% Similarity=-0.020 Sum_probs=51.6
Q ss_pred EEEEeCCCChhhHHHHHHHh-CCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccchHHH--
Q 029741 65 VVAGIEARGFVFGPSIALAI-GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL-- 141 (188)
Q Consensus 65 ~Iv~v~~gG~~~a~~lA~~l-~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~TG~Tl-- 141 (188)
.++-...+.-.+|..+|..+ |.|+..+..++..+ |+..+.+......+|++|+||--.... .-+
T Consensus 17 ~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpD------------GE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmE 83 (326)
T PLN02297 17 VHLFYCEETEELARKIAAESDAIELGSINWRKFPD------------GFPNLFINNAHGIRGQHVAFLASFSSP-AVIFE 83 (326)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCC------------CCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHH
Confidence 33333445578999999986 89887654433222 222233322234589999998764433 222
Q ss_pred -HHHHHHHHHcCCeEEEEEEEe
Q 029741 142 -SAAVRLLERMGAEVVECACVV 162 (188)
Q Consensus 142 -~~~~~~L~~~Ga~~v~v~~l~ 162 (188)
.-+++.|+++||+.+.++...
T Consensus 84 LLl~~dAlr~~ga~~i~~ViPY 105 (326)
T PLN02297 84 QLSVIYALPKLFVASFTLVLPF 105 (326)
T ss_pred HHHHHHHHHHcCCCEEEEEeeC
Confidence 334566778999987766554
No 100
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=63.87 E-value=49 Score=27.14 Aligned_cols=138 Identities=11% Similarity=0.134 Sum_probs=58.6
Q ss_pred CChhHHHHhhccccc---CCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHh-C
Q 029741 10 GDPRLQGISKAIRVV---PDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI-G 85 (188)
Q Consensus 10 ~~~~~~~~~~~~r~~---~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l-~ 85 (188)
.||.+....+-+++. -++.. -.+.++..+.-.|+..+..++ +++...++|+|+++... .+..++..+ +
T Consensus 9 ~~~~~~~~~~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~~~----~~l~~~~~DlIi~~gt~---aa~~~~~~~~~ 80 (294)
T PF04392_consen 9 SHPALDDIVRGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQIA----RKLKAQKPDLIIAIGTP---AAQALAKHLKD 80 (294)
T ss_dssp --HHHHHHHHHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHHHH----HHHCCTS-SEEEEESHH---HHHHHHHH-SS
T ss_pred ccHHHHHHHHHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHHHH----HHHhcCCCCEEEEeCcH---HHHHHHHhcCC
Confidence 455555555444222 12222 223344555556776555544 45666789999998543 344454544 4
Q ss_pred -CCeEEEeecCCCCCcccchheeeeccce---eEE---------EecCCCCCCCEE-EEEcCcccc-hHHHHHHHHHHHH
Q 029741 86 -AKFVPLRKPNKLPGEVISEAYVLEYGTD---RLE---------MHVGAIEPGERA-LVIDDLVAT-GGTLSAAVRLLER 150 (188)
Q Consensus 86 -~p~~~~~k~~~~~~~~~~~~~~~~~~~~---~~~---------l~~~~~~~Gk~V-LIVDDvi~T-G~Tl~~~~~~L~~ 150 (188)
+|.+++--.......... +... .+.+ -.+ +-..-...-++| +|.|+--++ ...+..+.+..++
T Consensus 81 ~iPVVf~~V~dp~~~~l~~-~~~~-~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~ 158 (294)
T PF04392_consen 81 DIPVVFCGVSDPVGAGLVD-SLDR-PGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKK 158 (294)
T ss_dssp -S-EEEECES-TTTTTS-S--SSS---SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeccChhhhhccc-cccC-CCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHH
Confidence 798875321111100000 0000 0011 001 000112345788 667766553 3556666677777
Q ss_pred cCCeEEE
Q 029741 151 MGAEVVE 157 (188)
Q Consensus 151 ~Ga~~v~ 157 (188)
.|.+.+.
T Consensus 159 ~g~~l~~ 165 (294)
T PF04392_consen 159 LGIELVE 165 (294)
T ss_dssp TT-EEEE
T ss_pred cCCEEEE
Confidence 8877554
No 101
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=63.17 E-value=98 Score=26.56 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhh--HHHHHHHhCCCeEEEeec-CCCCCcccchheeeeccceeEEEec
Q 029741 43 DHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVF--GPSIALAIGAKFVPLRKP-NKLPGEVISEAYVLEYGTDRLEMHV 119 (188)
Q Consensus 43 ~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~--a~~lA~~l~~p~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (188)
+++.....-+.+-+ +.+.+++.|++++.||++- --.+|..+|+|++..--. |..+.-. -..+++..
T Consensus 77 ~g~e~~ra~e~~~~-~~~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElq----------MtTf~~~g 145 (357)
T COG3535 77 NGDEAIRAFEVLED-YLGKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQ----------MTTFYLHG 145 (357)
T ss_pred CcHHHHHHHHHHHH-HhCCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceE----------EEEEEEcC
Confidence 44444444444433 3345889999999999863 334677789999864211 1111110 01122210
Q ss_pred ----C---CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 120 ----G---AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 120 ----~---~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
+ ...+|..+++ ..++...+-+.+.+..-+.|+..-.
T Consensus 146 ~~~tPlvi~d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~~~ 188 (357)
T COG3535 146 LPATPLVICDERGNRVII--ETVSNKWAERIARAATVEMGGSAAV 188 (357)
T ss_pred CCCCceEEEecCCCEEEE--EeecchhHHHHHHHHHHHcCCeEEE
Confidence 0 0136666665 7888888888888888899987543
No 102
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.48 E-value=40 Score=30.05 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=72.5
Q ss_pred CCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcC-----------CCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEee
Q 029741 26 DFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM-----------GISVVAGIEARGF-VFGPSIALAIGAKFVPLRK 93 (188)
Q Consensus 26 ~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~-----------~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k 93 (188)
+||+|. ....+..||+.-+.+.+.|.+.+... +--++.|||..|= .+-+++|..|+-....+.=
T Consensus 193 ~f~Hps----tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743|consen 193 GFPHPS----TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred CCCCCC----CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence 556553 36778899999999999987665432 2237889998774 5778899998865443321
Q ss_pred -cCCCCCcccchheeeeccceeEEEecCCCCCCCEEEEEcCcccc----h---------------HHHHHHHHHH---H-
Q 029741 94 -PNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT----G---------------GTLSAAVRLL---E- 149 (188)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~VLIVDDvi~T----G---------------~Tl~~~~~~L---~- 149 (188)
..+..... +.+- ..-+++.||||+||=.+ + -|+..++..+ .
T Consensus 269 t~v~~n~dL-----------r~LL----~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS 333 (457)
T KOG0743|consen 269 TEVKLDSDL-----------RHLL----LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWS 333 (457)
T ss_pred ccccCcHHH-----------HHHH----HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccc
Confidence 00000000 0000 11388999999998655 1 3444455444 3
Q ss_pred HcCCeEEEEEEEeeC
Q 029741 150 RMGAEVVECACVVGL 164 (188)
Q Consensus 150 ~~Ga~~v~v~~l~~~ 164 (188)
++|-+.|.+++.-..
T Consensus 334 scg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 334 SCGDERIIVFTTNHK 348 (457)
T ss_pred cCCCceEEEEecCCh
Confidence 356666666655443
No 103
>PRK12342 hypothetical protein; Provisional
Probab=60.42 E-value=33 Score=28.11 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEe----CCCChhhHHHHHHHhCCCeEE
Q 029741 48 KDTVDIFVDRYRDMGISVVAGI----EARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~v----~~gG~~~a~~lA~~l~~p~~~ 90 (188)
...++.|+..+++.++|+|++= +...-..+..+|..||+|++.
T Consensus 95 ~ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 95 LDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 3456666666665579988863 333446788999999999864
No 104
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=57.30 E-value=36 Score=29.28 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=45.3
Q ss_pred CCCEEEEEcCcccc-----hHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeEEEEec
Q 029741 124 PGERALVIDDLVAT-----GGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEP 182 (188)
Q Consensus 124 ~Gk~VLIVDDvi~T-----G~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~~l~~~ 182 (188)
+=..+||.|..+.+ +.++..+++..++.|++++.+-+.+..++..+.|-| +-+++.+
T Consensus 288 Ave~LLv~De~lr~~~~~~re~~~~ll~~ve~~ggkV~Ivs~~he~Ge~Lk~lGG--iaaILRf 349 (352)
T COG1537 288 AVETLLVTDELLRSDDVEEREDVEELLEEVESMGGKVVIVSTEHEPGERLKALGG--IAAILRF 349 (352)
T ss_pred cceeEEeehhhhcccchhhHHHHHHHHHHHHHcCCeEEEEecCCcchHHHHhccC--eEEEEEe
Confidence 45689999999888 589999999999999999888888877765555555 5555554
No 105
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=56.39 E-value=28 Score=22.20 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.+++.|+++++- |.....++..|++.|...+.
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 478899998887 77888899999999977655
No 106
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=55.79 E-value=28 Score=28.54 Aligned_cols=43 Identities=7% Similarity=0.083 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEe----CCCChhhHHHHHHHhCCCeEE
Q 029741 48 KDTVDIFVDRYRDMGISVVAGI----EARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~v----~~gG~~~a~~lA~~l~~p~~~ 90 (188)
...+..|+..+.+.++|+|++= +...-..+..+|..||+|++.
T Consensus 98 ~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 98 QQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 4556666666666679988863 344446788999999999864
No 107
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=55.42 E-value=26 Score=22.66 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.7
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.+++.|++++ .+|.....+...|++.|.+.+.
T Consensus 54 ~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~ 85 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVY 85 (100)
T ss_pred CCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceE
Confidence 4788999998 5788889999999999988644
No 108
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=55.23 E-value=25 Score=23.44 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.++++|+++++ +|.....++..|+..|.+.+.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 85 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPVA 85 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEE
Confidence 36778999986 677778888889999987553
No 109
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=53.32 E-value=43 Score=28.15 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=38.7
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeCh
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~ 165 (188)
+.|++|+||--=-........+.+.|+.+|+.+.+.+.+-+..
T Consensus 81 L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~ 123 (308)
T PF11382_consen 81 LTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKF 123 (308)
T ss_pred cCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhh
Confidence 5999999999766788899999999999999999999998764
No 110
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=51.50 E-value=43 Score=25.10 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeC-CCChhhHHHHHHHhCCCeEE
Q 029741 48 KDTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~v~-~gG~~~a~~lA~~l~~p~~~ 90 (188)
...++.+++.+.+.++++|+... ..|-.++..+|..||.|++.
T Consensus 69 ~~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 69 EPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 45566666666656788777654 56779999999999998753
No 111
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=50.81 E-value=1.6e+02 Score=25.14 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=49.1
Q ss_pred CChhHHHHhhccc-ccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHh-CCC
Q 029741 10 GDPRLQGISKAIR-VVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI-GAK 87 (188)
Q Consensus 10 ~~~~~~~~~~~~r-~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l-~~p 87 (188)
.||-|...++-+- .+.++... ..-++..+-..|+.....+++.+. ...+|+|+++.. +.|+.+..+. ++|
T Consensus 40 eHpaLd~~~~G~~~aLk~~G~~-n~~i~~~na~~~~~~a~~iarql~----~~~~dviv~i~t---p~Aq~~~s~~~~iP 111 (322)
T COG2984 40 EHPALDAAREGVKEALKDAGYK-NVKIDYQNAQGDLGTAAQIARQLV----GDKPDVIVAIAT---PAAQALVSATKTIP 111 (322)
T ss_pred cchhHHHHHHHHHHHHHhcCcc-CeEEEeecCCCChHHHHHHHHHhh----cCCCcEEEecCC---HHHHHHHHhcCCCC
Confidence 5787777776663 23332211 345567777788877777666654 567899998865 6677776655 679
Q ss_pred eEEEe
Q 029741 88 FVPLR 92 (188)
Q Consensus 88 ~~~~~ 92 (188)
.++.-
T Consensus 112 VV~aa 116 (322)
T COG2984 112 VVFAA 116 (322)
T ss_pred EEEEc
Confidence 88753
No 112
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=50.15 E-value=30 Score=22.75 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.+++.++++.. +|.+...+...|++.|...+.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 54 DRDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred CCCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 47788999988 888999999999999987654
No 113
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=49.87 E-value=41 Score=26.31 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeCCC----ChhhHHHHHHHhCCCeE
Q 029741 48 KDTVDIFVDRYRDMGISVVAGIEAR----GFVFGPSIALAIGAKFV 89 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~v~~g----G~~~a~~lA~~l~~p~~ 89 (188)
+..++.+++.+...++++|+..... |-.++..+|..||.+++
T Consensus 94 e~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 94 LATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 3445555555554468888877544 88999999999999874
No 114
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.84 E-value=48 Score=20.48 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.0
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeCh
Q 029741 127 RALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (188)
Q Consensus 127 ~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~ 165 (188)
+++|+.++ ||.-+...+..+++.|.....-+++...+
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~tN 38 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTPTN 38 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECCCc
Confidence 56777777 88899999999999999666666665543
No 115
>PRK04195 replication factor C large subunit; Provisional
Probab=48.33 E-value=2e+02 Score=25.60 Aligned_cols=111 Identities=14% Similarity=0.248 Sum_probs=60.0
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhcC--CCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccce
Q 029741 37 ITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGF-VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTD 113 (188)
Q Consensus 37 ~~~ll~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~ 113 (188)
+..+.++......+...+....... ..-++.|++..|= .+|..+|..++.+++.+..........+.. . .+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~-~---i~~- 87 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER-V---AGE- 87 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH-H---HHH-
Confidence 5667777777777666665444322 2336778887775 589999999998766542111000000000 0 000
Q ss_pred eEEEecCCCC-CCCEEEEEcCccc-ch----HHHHHHHHHHHHcCCe
Q 029741 114 RLEMHVGAIE-PGERALVIDDLVA-TG----GTLSAAVRLLERMGAE 154 (188)
Q Consensus 114 ~~~l~~~~~~-~Gk~VLIVDDvi~-TG----~Tl~~~~~~L~~~Ga~ 154 (188)
.. ....+. .+++||||||+=. ++ ..+.++.+.++..+..
T Consensus 88 -~~-~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~ 132 (482)
T PRK04195 88 -AA-TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQP 132 (482)
T ss_pred -hh-ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCC
Confidence 00 001111 3689999998732 12 3467777777765543
No 116
>PRK04940 hypothetical protein; Provisional
Probab=45.68 E-value=1.4e+02 Score=23.13 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=32.4
Q ss_pred cCHHHHHH-HHHHHHHHHhcC--CCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 42 LDHKAFKD-TVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 42 ~~~~~~~~-l~~~la~~~~~~--~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
..|...-. +-+.+++..... +...+||..-||+ +|..+|...++|.+.+
T Consensus 37 ~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGy-yA~~La~~~g~~aVLi 88 (180)
T PRK04940 37 LHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGY-WAERIGFLCGIRQVIF 88 (180)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHH-HHHHHHHHHCCCEEEE
Confidence 56655433 333333322211 4579999999995 6789999999998876
No 117
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=45.24 E-value=51 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEee
Q 029741 61 MGISVVAGIEARGF-VFGPSIALAIGAKFVPLRK 93 (188)
Q Consensus 61 ~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k 93 (188)
.+.|+|+|+-.|-. ..|..+|..+++|++.+-.
T Consensus 83 ~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT 116 (360)
T COG0371 83 DGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPT 116 (360)
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecC
Confidence 46799999987664 6899999999999988643
No 118
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=42.10 E-value=61 Score=24.49 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeC-CCChhhHHHHHHHhCCCeE
Q 029741 48 KDTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFV 89 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~v~-~gG~~~a~~lA~~l~~p~~ 89 (188)
...++.+++.+.+.++++|+... ..|-.++..+|..|+.|++
T Consensus 77 ~~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~v 119 (181)
T cd01985 77 EATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQI 119 (181)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcc
Confidence 44555555555555788777654 5677899999999999875
No 119
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=40.81 E-value=47 Score=21.99 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=25.4
Q ss_pred CEEEEEcCcccchHHHHHHHHHHHHc-C-CeEEEEEEE
Q 029741 126 ERALVIDDLVATGGTLSAAVRLLERM-G-AEVVECACV 161 (188)
Q Consensus 126 k~VLIVDDvi~TG~Tl~~~~~~L~~~-G-a~~v~v~~l 161 (188)
..+.+++|...+=.++.++++.+++. + .+.+.++..
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~ 49 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGA 49 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEcc
Confidence 35677777999999999999999987 3 455555553
No 120
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=39.92 E-value=68 Score=27.77 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=34.9
Q ss_pred CCCCCCceEEechhhhcCHHH-H-HHHHHHHHHHHhcC--CCcEEEEeCCCChhhHHHHHHHhCCCeEE
Q 029741 26 DFPIPGIMFQDITTLLLDHKA-F-KDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 26 ~~~~~g~~~~d~~~ll~~~~~-~-~~l~~~la~~~~~~--~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~ 90 (188)
.+|..|+.+.....++.|+.. + ..+.+++ ..+++. ++|+|+++ ||+. +-..|..+++|+++
T Consensus 54 ~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~-~~~~~~~~~p~~v~~~--Gg~v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 54 ELPSGGFSYQSLRGLLRDLRAGLVGLTLGQW-RALRKWAKKGDLIVAV--GDIV-PLLFAWLSGKPYAF 118 (396)
T ss_pred CCCCCCccCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcCCEEEEE--CcHH-HHHHHHHcCCCceE
Confidence 344456656556555555533 2 2222221 223333 78888876 6777 56667778999877
No 121
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=39.73 E-value=1.1e+02 Score=25.06 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=26.2
Q ss_pred CcEEEEeCCCChhhHHHHHHHhCCCeEEEe
Q 029741 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (188)
Q Consensus 63 ~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~ 92 (188)
||+++-++...=..|-.=|..||+|.+-+-
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALV 186 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEe
Confidence 999999999888888888999999987653
No 122
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=39.42 E-value=72 Score=23.77 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~ 160 (188)
.+||+|+|+-|- .|--=-++.+.++.+|++++...+
T Consensus 3 l~gkKviiiGdR--DGiPgpAie~c~~~~gaevvfs~T 38 (150)
T PF04723_consen 3 LEGKKVIIIGDR--DGIPGPAIEECVKTAGAEVVFSST 38 (150)
T ss_pred cCCcEEEEEecC--CCCCcHHHHHHHHhcCceEEEEee
Confidence 589999999874 343444455556788998876643
No 123
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=39.22 E-value=36 Score=26.13 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCEEEEEcCcccchHHHHHHH-HHHHHcCCeEEEEEEEeeCh
Q 029741 124 PGERALVIDDLVATGGTLSAAV-RLLERMGAEVVECACVVGLP 165 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~-~~L~~~Ga~~v~v~~l~~~~ 165 (188)
.| .=+||||++.++.-+.... +.| .|..+..|.+.|...
T Consensus 82 aG-~~VIvD~v~~~~~~l~d~l~~~L--~~~~vl~VgV~Cple 121 (174)
T PF07931_consen 82 AG-NNVIVDDVFLGPRWLQDCLRRLL--AGLPVLFVGVRCPLE 121 (174)
T ss_dssp TT--EEEEEE--TTTHHHHHHHHHHH--TTS-EEEEEEE--HH
T ss_pred CC-CCEEEecCccCcHHHHHHHHHHh--CCCceEEEEEECCHH
Confidence 45 4567899999998766666 555 366666666666653
No 124
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=39.08 E-value=67 Score=26.45 Aligned_cols=33 Identities=39% Similarity=0.496 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~ 159 (188)
.+|++|+|+ .+|++-+.++..|.+.|++.+.++
T Consensus 123 ~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~ 155 (282)
T TIGR01809 123 LAGFRGLVI----GAGGTSRAAVYALASLGVTDITVI 155 (282)
T ss_pred cCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEE
Confidence 478899865 899999999999999998876543
No 125
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=38.12 E-value=92 Score=26.68 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=39.8
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChhhhhccCCCCeEEEEec
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEP 182 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~~~~~l~~~~~~~l~~~ 182 (188)
+=+.+||-|+.+.+-.-+..+++..++.|+++..+-.-+..+.....|-| +-+++.+
T Consensus 293 AVetLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~Ss~~e~G~qL~~lgG--iaAiLRy 349 (351)
T TIGR00111 293 AIEYLLVTDKVLVQREEIEKLLDSVESMGGKVVILSTEHELGKQLDSLGG--IAGILRF 349 (351)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHHHcCCEEEEEcCCCccHHHHhhCCC--EEEEEec
Confidence 33689999999767667888999999999997766666655543333434 5555544
No 126
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=38.00 E-value=1.1e+02 Score=23.62 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=31.1
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
.+|...-.....+.+..... ..+++|...||+. |..+|..+++|.+.+
T Consensus 40 ~~p~~a~~~l~~~i~~~~~~-~~~liGSSlGG~~-A~~La~~~~~~avLi 87 (187)
T PF05728_consen 40 PFPEEAIAQLEQLIEELKPE-NVVLIGSSLGGFY-ATYLAERYGLPAVLI 87 (187)
T ss_pred cCHHHHHHHHHHHHHhCCCC-CeEEEEEChHHHH-HHHHHHHhCCCEEEE
Confidence 35555444444444433322 2589999999965 568899999998765
No 127
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=37.99 E-value=79 Score=21.12 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.+++.|+++.+ +|..-..++..|++.|.+.+.
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v~ 90 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKNVY 90 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCccee
Confidence 46788999885 677777788889999987543
No 128
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=37.82 E-value=95 Score=21.12 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=17.9
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcC
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMG 152 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~G 152 (188)
.+.+||+||| .-.........|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5679999999 3344555556666677
No 129
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=36.36 E-value=39 Score=25.09 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEeC-CCChhhHHHHHHHhCCCeEE
Q 029741 49 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~-~gG~~~a~~lA~~l~~p~~~ 90 (188)
..++.+++.+.+.++++|+... ..|-.++..+|..|+.|++.
T Consensus 77 ~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 77 AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 4445555555545778766654 56677999999999999854
No 130
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=36.17 E-value=1.1e+02 Score=28.36 Aligned_cols=46 Identities=15% Similarity=-0.026 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhh-HHHHHHHhCC--CeEE
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGA--KFVP 90 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~-a~~lA~~l~~--p~~~ 90 (188)
..+..+.+.+.+.+.+.++|+++.++.-|+++ -..-++..|+ |.++
T Consensus 293 ~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 293 FKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 34445666667777777999999999999975 3334455685 8765
No 131
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=36.04 E-value=53 Score=23.73 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeChh
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~~ 166 (188)
.+|++|+|+ .+|++-+.++..|.+.|++.+. +++|..
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~---i~nRt~ 46 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAALGAKEIT---IVNRTP 46 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEE---EEESSH
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEE---EEECCH
Confidence 489999975 7899999999999999999775 455653
No 132
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=35.34 E-value=15 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.6
Q ss_pred CcccchHHHHHHHHHHHHc
Q 029741 133 DLVATGGTLSAAVRLLERM 151 (188)
Q Consensus 133 Dvi~TG~Tl~~~~~~L~~~ 151 (188)
.+++.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5789999999999998864
No 133
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=34.83 E-value=95 Score=27.34 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=44.6
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhH-HH---HHHHhCCCeEEEe
Q 029741 33 MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PS---IALAIGAKFVPLR 92 (188)
Q Consensus 33 ~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a-~~---lA~~l~~p~~~~~ 92 (188)
.-.|+..++-+++.++.+++++..... +.|.|+.++-=|...+ .. +...||+++..+.
T Consensus 189 ~~~~iAr~ld~~~~~~~l~~~l~~~~~--~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp 250 (422)
T PRK05329 189 RAVNIARLLDDPENREALADALKPLAG--DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELP 250 (422)
T ss_pred cHHHHHHHhCChhHHHHHHHHHHHhcC--CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeC
Confidence 446788999999999999999987554 4578888888887777 44 4467999987653
No 134
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=34.79 E-value=1.2e+02 Score=26.08 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCChhhHH-HHHHHhCCCeEEE
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPL 91 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~-~lA~~l~~p~~~~ 91 (188)
.......+.+.+.++|+|+++..-|+++.. .-|..+|+|+++.
T Consensus 76 ~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 76 KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 344455566667799999999987777432 3456679998764
No 135
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=33.92 E-value=2.4e+02 Score=24.34 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCcEEEEeCCCChhhHHH-HH---HHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCCCCCEE
Q 029741 53 IFVDRYRDMGISVVAGIEARGFVFGPS-IA---LAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERA 128 (188)
Q Consensus 53 ~la~~~~~~~~d~Iv~v~~gG~~~a~~-lA---~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gk~V 128 (188)
.+.+.+++.+.|+++.-..-|...|.. .| ...|++|+......-...+ .+ . ....+-.-.
T Consensus 114 dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P~~ia~~p-------------~~--a-~~f~e~glP 177 (351)
T TIGR03450 114 DVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDP-------------EW--A-KKFTDAGVP 177 (351)
T ss_pred HHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccCccccCCH-------------HH--H-HHHHHCCCC
Confidence 455666777899999865555443332 23 3357887653211100000 00 0 000011123
Q ss_pred EEEcCccc-chHHHHHH--HHHHHHcCCeEEEEEEEeeC
Q 029741 129 LVIDDLVA-TGGTLSAA--VRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 129 LIVDDvi~-TG~Tl~~~--~~~L~~~Ga~~v~v~~l~~~ 164 (188)
++=||+-+ ||.|+... +++++.+|.++...+.+--.
T Consensus 178 i~GDD~Ksq~GaTi~h~vLa~lf~~Rgl~v~~~yq~Nig 216 (351)
T TIGR03450 178 IVGDDIKSQVGATITHRVLAKLFEDRGVRLDRTMQLNVG 216 (351)
T ss_pred EecccccccCCCchHHHHHHHHHHHcCCceeeEEEEeec
Confidence 44477765 89999765 89999999988887766543
No 136
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=33.60 E-value=1.5e+02 Score=25.08 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=24.9
Q ss_pred HHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 54 FVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 54 la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
+.+.+...++|+|+.-. ....+..+|+.+|+|++.+
T Consensus 84 l~~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~~ 119 (392)
T TIGR01426 84 LEEAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVISS 119 (392)
T ss_pred HHHHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEEE
Confidence 33444445789887644 3456888999999998653
No 137
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=33.40 E-value=1.3e+02 Score=25.36 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
..++..++.+++.+.|.||++-.|.. ..|..+|..+++|++.+-..
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~p~i~IPTt 110 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGLPIIAIPTT 110 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcCCEEEEcCC
Confidence 35566666666678999999987665 57888888889998876543
No 138
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=33.21 E-value=1.3e+02 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 51 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 51 ~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
++.+.+.+++.++|.|+++-.|.. ..|..+|..+++|++.+-..
T Consensus 65 v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 65 IERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCc
Confidence 333444455567899999987665 57888888889998876543
No 139
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=33.21 E-value=1.2e+02 Score=25.46 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
..++.+.+.+.+.++|+|+++-.|.. ..|..+|...++|++.+-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~p~i~iPTT 111 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGIPFISVPTA 111 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCCCEEEecCc
Confidence 44444555555568899999987654 57888888889998876543
No 140
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=32.98 E-value=2e+02 Score=23.66 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEE----eCCCChhhHHHHHHHhCCCeEE
Q 029741 48 KDTVDIFVDRYRDMGISVVAG----IEARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~----v~~gG~~~a~~lA~~l~~p~~~ 90 (188)
...++.|+..+.+.++|+|++ ++...-..+..+|..||.|.+.
T Consensus 97 ~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t 143 (260)
T COG2086 97 LATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVT 143 (260)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceee
Confidence 456667777776668887775 3444446788999999999864
No 141
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=32.07 E-value=20 Score=28.43 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=14.9
Q ss_pred EcCcccchHHHHHHHHHHHHcCCeEEEE
Q 029741 131 IDDLVATGGTLSAAVRLLERMGAEVVEC 158 (188)
Q Consensus 131 VDDvi~TG~Tl~~~~~~L~~~Ga~~v~v 158 (188)
|=|++.||+||+ +.|-+++..
T Consensus 148 IvDiv~TG~TLr-------~NgL~~~e~ 168 (204)
T PRK13584 148 IVDIVQTGTTLK-------ANGLVEKQH 168 (204)
T ss_pred EEEEECccHHHH-------HCCCEEEEE
Confidence 348999999975 566665543
No 142
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=31.99 E-value=96 Score=20.70 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 158 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v 158 (188)
.+++.|+++++ +|.+...++..|+..|-+.+..
T Consensus 64 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 96 (106)
T cd01519 64 SKDKELIFYCK---AGVRSKAAAELARSLGYENVGN 96 (106)
T ss_pred CCCCeEEEECC---CcHHHHHHHHHHHHcCCcccee
Confidence 35789999975 5778888899999999876543
No 143
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.52 E-value=1.5e+02 Score=25.03 Aligned_cols=46 Identities=7% Similarity=-0.007 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
..+...++..+..+.|.|+++-.|.. ..|..+|..+++|++.+-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCc
Confidence 34444455566668999999987665 57888888889998876543
No 144
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=31.45 E-value=50 Score=26.95 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=25.5
Q ss_pred HHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeecC
Q 029741 54 FVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKPN 95 (188)
Q Consensus 54 la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~~ 95 (188)
+...++..+.|+|+++-.|-+ .++..+|..+++|++.+-...
T Consensus 67 ~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~~p~isVPTa~ 109 (250)
T PF13685_consen 67 LVEALRPKDADLIIGVGGGTIIDIAKYAAFELGIPFISVPTAA 109 (250)
T ss_dssp HHTTS--TT--EEEEEESHHHHHHHHHHHHHHT--EEEEES--
T ss_pred HHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEecccc
Confidence 333444446788998877665 589999999999998875443
No 145
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=31.18 E-value=54 Score=26.37 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=23.0
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcC
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMG 152 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~G 152 (188)
+..||+|||+ +-|.|++++++.|....
T Consensus 171 l~~Gk~VlI~----AHGNSlRaLiK~L~~iS 197 (230)
T COG0588 171 LKSGKNVLIV----AHGNSLRALIKYLEGIS 197 (230)
T ss_pred HhCCCeEEEE----ecchhHHHHHHHHhCCC
Confidence 4589999986 67999999999998653
No 146
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=30.87 E-value=1.4e+02 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHh--CCCeEEEeec
Q 029741 51 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAI--GAKFVPLRKP 94 (188)
Q Consensus 51 ~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l--~~p~~~~~k~ 94 (188)
++.+++.+++.+.|.|+++-.|.. ..|..+|..+ ++|++.+-..
T Consensus 67 v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 67 VKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 333444444467899999987665 5788888887 8998776543
No 147
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=30.45 E-value=24 Score=28.24 Aligned_cols=20 Identities=50% Similarity=0.561 Sum_probs=14.3
Q ss_pred EcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 131 IDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 131 VDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
|=|++.||+||+ +.|-+++.
T Consensus 158 IvDivsTG~TLr-------~NgL~~ie 177 (215)
T PRK01686 158 IVDIVETGNTLR-------ANGLVEVE 177 (215)
T ss_pred EEEeecChHHHH-------HCcCEEee
Confidence 338999999985 56666544
No 148
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=30.37 E-value=1.5e+02 Score=25.33 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
..++..++.+++.+.|+|+++-.|.. ..|..+|..+++|++.+-..
T Consensus 71 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 71 NEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCc
Confidence 35556666666678999999987765 57888888889998776443
No 149
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=30.13 E-value=90 Score=20.57 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCEEEEEcCcccchHH--HHHHHHHHHHcCCeEEE
Q 029741 124 PGERALVIDDLVATGGT--LSAAVRLLERMGAEVVE 157 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~T--l~~~~~~L~~~Ga~~v~ 157 (188)
+.+.|+++.+ +|.+ ...++..|++.|.+.+.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~ 81 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVA 81 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEE
Confidence 4678888865 4532 57788899999988765
No 150
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.96 E-value=1.5e+02 Score=25.03 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
..++..++.+++.++|.||++-.|.. ..|..+|..+++|++.+-..
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCCc
Confidence 44566666666678999999987765 57888888889998776543
No 151
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=29.82 E-value=1.3e+02 Score=25.56 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 50 l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
.+...++.+++.+.|+||++-.|.. ..|..+|..+++|++.+-..
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCEEEeCCc
Confidence 3455555566668899999987664 57888888889998876543
No 152
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=29.78 E-value=2.9e+02 Score=22.68 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=61.5
Q ss_pred hcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhH-HHHHHHhCCCeEEEee-cCCCCCcccch-heeeeccc--eeE
Q 029741 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIALAIGAKFVPLRK-PNKLPGEVISE-AYVLEYGT--DRL 115 (188)
Q Consensus 41 l~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a-~~lA~~l~~p~~~~~k-~~~~~~~~~~~-~~~~~~~~--~~~ 115 (188)
-.+|......++.|.. +.+++.|+++..++...| ..++...++|++..-. ...+.+.-... .|+..... ...
T Consensus 50 ~~~p~~a~~~~~~li~---~~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~ 126 (333)
T cd06328 50 AGNPEVAVSLARELIG---DDGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDAI 126 (333)
T ss_pred CCChHHHHHHHHHHHH---hcCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHHH
Confidence 3588877777777754 237889999888877654 3577778999875210 00000000000 01110000 000
Q ss_pred EEecCCCCCCCEEEEEcCcccchHHHHH-HHHHHHHcCCeEEEEEEE
Q 029741 116 EMHVGAIEPGERALVIDDLVATGGTLSA-AVRLLERMGAEVVECACV 161 (188)
Q Consensus 116 ~l~~~~~~~Gk~VLIVDDvi~TG~Tl~~-~~~~L~~~Ga~~v~v~~l 161 (188)
.+..-....+++|.++.+=-..|.++.. ..+.+++.|.+++.....
T Consensus 127 ~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~ 173 (333)
T cd06328 127 AAAAALGKPGKKIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEEYA 173 (333)
T ss_pred HHHHHHHhcCCeEEEEecCccccHHHHHHHHHHHHhCCCEEeeeeeC
Confidence 0000000126777776666666666644 446777888887765443
No 153
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=29.75 E-value=1.1e+02 Score=26.56 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhh-HHHHHHHhCCC--eEE
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAK--FVP 90 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~-a~~lA~~l~~p--~~~ 90 (188)
..+..+.+.+.+.+...++|+++.++.-||++ -..-+...|.+ .++
T Consensus 65 ~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viy 113 (373)
T PF02684_consen 65 PKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIY 113 (373)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEE
Confidence 34445566667777777999999999999975 22234455666 554
No 154
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=29.44 E-value=1.2e+02 Score=20.11 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=24.6
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
+++.|+++.+ +|.....++..|.+.|...+.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~ 87 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVY 87 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEE
Confidence 5788999876 577788888899999987554
No 155
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.34 E-value=3.3e+02 Score=22.48 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCcEEEEeC-C---CChhhHHHHHHHhCCCeEEEe
Q 029741 51 VDIFVDRYRDMGISVVAGIE-A---RGFVFGPSIALAIGAKFVPLR 92 (188)
Q Consensus 51 ~~~la~~~~~~~~d~Iv~v~-~---gG~~~a~~lA~~l~~p~~~~~ 92 (188)
++.|++.+++.+++++|=-. . .=-.-|..+|..+|+|++..+
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 34556666667788777422 1 111235566777899987543
No 156
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=29.22 E-value=24 Score=26.87 Aligned_cols=20 Identities=45% Similarity=0.582 Sum_probs=14.2
Q ss_pred EcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 131 IDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 131 VDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
|=|++.||+||+ +.|-+.+.
T Consensus 110 IvDiv~TG~TLr-------~NgL~~i~ 129 (163)
T PF01634_consen 110 IVDIVETGTTLR-------ANGLKEIE 129 (163)
T ss_dssp EEEEESSSHHHH-------HTTEEEEE
T ss_pred EEEeccCcHHHH-------HCCCEEeE
Confidence 338999999985 56665553
No 157
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=29.17 E-value=2.2e+02 Score=23.77 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeCCCChhh-HHHHHHHhCCCeEEE
Q 029741 48 KDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPL 91 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~v~~gG~~~-a~~lA~~l~~p~~~~ 91 (188)
......+.+.+...++|+|.+-......+ +...|..+++|.+.+
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 34445666677777899999986555444 566677789998765
No 158
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=28.87 E-value=1.7e+02 Score=19.10 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEEe
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~~ 92 (188)
+.....+..+++.+++.++.+.+-.....+.---.-|...|+|++.+.
T Consensus 12 ~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 12 EEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEE
Confidence 345678888999998888877777755555444455777899997753
No 159
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=28.77 E-value=1.2e+02 Score=22.61 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
.+||+|+|+-|= .|--=-++.+.++..|++++...+=
T Consensus 4 l~gKkviiiGdR--DGiPgpAie~c~k~~gaevvfs~TE 40 (154)
T PRK13265 4 LEGKKVIIIGDR--DGIPGPAIEECVKTTGAEVVFSSTE 40 (154)
T ss_pred ccCcEEEEEecC--CCCCcHHHHHHHhccCceEEEEeee
Confidence 478999998773 3333334444555689988766443
No 160
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=28.54 E-value=2.2e+02 Score=23.41 Aligned_cols=45 Identities=7% Similarity=-0.040 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeCCCChhh-HHHHHHHhCCCeEEE
Q 029741 47 FKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPL 91 (188)
Q Consensus 47 ~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~-a~~lA~~l~~p~~~~ 91 (188)
...+...+.+.+...++|+|++.......+ +...|..+++|++..
T Consensus 73 ~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 73 TAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 334455566666666899999886544444 455666779998764
No 161
>PRK11024 colicin uptake protein TolR; Provisional
Probab=28.52 E-value=1.9e+02 Score=21.02 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=29.1
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEE
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~ 159 (188)
+...|+|--|=-++=.++..+++.++++|..++..+
T Consensus 102 ~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 102 PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 345677777777777899999999999999887764
No 162
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=28.32 E-value=1.8e+02 Score=23.72 Aligned_cols=39 Identities=10% Similarity=-0.106 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE
Q 029741 52 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 52 ~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~ 90 (188)
..+.+.+++.++|+|++........+...+..+++|+++
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 345555666789999997544334455567777888865
No 163
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=28.16 E-value=27 Score=28.21 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=13.8
Q ss_pred EcCcccchHHHHHHHHHHHHcCCeEE
Q 029741 131 IDDLVATGGTLSAAVRLLERMGAEVV 156 (188)
Q Consensus 131 VDDvi~TG~Tl~~~~~~L~~~Ga~~v 156 (188)
|=|++.||+||+ +.|-+.+
T Consensus 175 IvDivsTG~TLr-------~NgL~~i 193 (228)
T PRK13583 175 IVDITSTGETLR-------ANHLKIL 193 (228)
T ss_pred hhhhhchhHHHH-------HCCCEEe
Confidence 338999999985 5565555
No 164
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=27.93 E-value=1.5e+02 Score=19.22 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCC
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGA 153 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga 153 (188)
..+++|+++.+ +|.....+...|++.|.
T Consensus 49 ~~~~~vvl~c~---~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 49 PKDKEIIVYCA---VGLRGYIAARILTQNGF 76 (90)
T ss_pred CCCCcEEEEcC---CChhHHHHHHHHHHCCC
Confidence 45678888865 57778888889999998
No 165
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=27.79 E-value=46 Score=25.45 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=15.8
Q ss_pred EEEEcCcccchHHHHHHHHH
Q 029741 128 ALVIDDLVATGGTLSAAVRL 147 (188)
Q Consensus 128 VLIVDDvi~TG~Tl~~~~~~ 147 (188)
=+|+|=+..||+|+.+|.++
T Consensus 193 diVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHT
T ss_pred eeeehhhhccChHHHHHHHc
Confidence 36799999999999988764
No 166
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=27.54 E-value=1e+02 Score=25.75 Aligned_cols=46 Identities=9% Similarity=-0.179 Sum_probs=31.1
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCh----hhHHHHHHHhCCCeEE
Q 029741 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGF----VFGPSIALAIGAKFVP 90 (188)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~----~~a~~lA~~l~~p~~~ 90 (188)
.||. ..+..+++.+....+.+|+++...+. ..+..++..+++|++.
T Consensus 46 ~d~~---~~~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is 95 (362)
T cd06367 46 TDPI---SLLLSVCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVG 95 (362)
T ss_pred CCHH---HHHHHHHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEE
Confidence 4662 33334444444446778889888775 5678889999999875
No 167
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=27.54 E-value=1.2e+02 Score=20.28 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.++.|+++++ +|.+...++..|+..|...+.
T Consensus 64 ~~~~vv~~c~---~g~~s~~~a~~L~~~G~~~v~ 94 (105)
T cd01525 64 KGKIIVIVSH---SHKHAALFAAFLVKCGVPRVC 94 (105)
T ss_pred cCCeEEEEeC---CCccHHHHHHHHHHcCCCCEE
Confidence 3678888774 566667778889999987654
No 168
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=27.49 E-value=1.9e+02 Score=26.70 Aligned_cols=80 Identities=13% Similarity=-0.053 Sum_probs=48.9
Q ss_pred hhHHHHhhcccccCCCCCCC--ceEEe-----chhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCC--CChhhHHHHHH
Q 029741 12 PRLQGISKAIRVVPDFPIPG--IMFQD-----ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEA--RGFVFGPSIAL 82 (188)
Q Consensus 12 ~~~~~~~~~~r~~~~~~~~g--~~~~d-----~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~--gG~~~a~~lA~ 82 (188)
.+.+.+++.+|..+++|... +-..| .......--..+.++..+...+..+.+|.+|.+.. ...|=..+-+.
T Consensus 63 ~l~~~vk~~i~~aGg~p~ef~t~~v~DGiamG~~GM~~SL~SRelIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~ 142 (575)
T COG0129 63 DLAQLVKEGIREAGGVPVEFGTIAVCDGIAMGHDGMPYSLPSRELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAA 142 (575)
T ss_pred HHHHHHHHHHHHcCCceeEeCCCCccCccccCCCCcccccccHHHHHHHHHHHHhccCcceEEEecCCCCccHHHHHHHH
Confidence 35567777888888887543 21223 22222333445677777777777778998888763 33332223355
Q ss_pred HhCCCeEEE
Q 029741 83 AIGAKFVPL 91 (188)
Q Consensus 83 ~l~~p~~~~ 91 (188)
.+++|.+++
T Consensus 143 r~niPaIfv 151 (575)
T COG0129 143 RLNIPAIFV 151 (575)
T ss_pred hcCCCEEEe
Confidence 679999886
No 169
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=27.46 E-value=1.8e+02 Score=24.70 Aligned_cols=46 Identities=13% Similarity=0.301 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
..++.+++.+.+.+.|+|+++-.|.. ..|..+|...++|++.+-..
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT 120 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTA 120 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCC
Confidence 34444555555557899999987655 47888887789998876544
No 170
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=27.38 E-value=2e+02 Score=20.95 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=31.5
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEE
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~ 160 (188)
++..|+|-=|=-.+-.++..+.+.++++|...+..++
T Consensus 98 ~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 98 KDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4567888888888889999999999999999877654
No 171
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=27.21 E-value=2e+02 Score=20.25 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=45.0
Q ss_pred EEEEeCCCCh-hhHHHHHHHhCCCeEEEeecCCCCCcccchheeeeccceeEEEecCCCC---CCCEEEEEcCcccchHH
Q 029741 65 VVAGIEARGF-VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIE---PGERALVIDDLVATGGT 140 (188)
Q Consensus 65 ~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~Gk~VLIVDDvi~TG~T 140 (188)
+++|++..|= .++..+|..++.++..+.-....+.......+....+...+. .+.+. ....++++|++=..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~--~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFK--DGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEE--E-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccc--cccccccccceeEEEECCcccCCHH
Confidence 5678777664 689999999998876654322221111111111111111222 12222 35689999999876666
Q ss_pred HHHHHHHHHHc
Q 029741 141 LSAAVRLLERM 151 (188)
Q Consensus 141 l~~~~~~L~~~ 151 (188)
+...+..+.+.
T Consensus 81 v~~~L~~ll~~ 91 (139)
T PF07728_consen 81 VLESLLSLLEE 91 (139)
T ss_dssp HHHTTHHHHSS
T ss_pred HHHHHHHHHhh
Confidence 66666555554
No 172
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=27.16 E-value=36 Score=23.37 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=32.1
Q ss_pred ChhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHH
Q 029741 11 DPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIF 54 (188)
Q Consensus 11 ~~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~l 54 (188)
+-..++|.+.+.+.|.|.....+.+|+.++ .++..+..+...+
T Consensus 26 ~~l~~~L~~ki~~ap~FF~~~pvvldl~~l-~~~~dl~~L~~~l 68 (99)
T PF05209_consen 26 DELLQALDEKIAQAPDFFKNAPVVLDLSNL-PDELDLAALVELL 68 (99)
T ss_dssp HHHHHHHHHHHHHTHHHCTTTEEEEEEEEE-ETTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHhHcCCCeEEehhhc-CChhhHHHHHHHH
Confidence 345678888888889988777888999888 6666555555554
No 173
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=26.99 E-value=2.1e+02 Score=20.28 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEE
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~ 159 (188)
+...|+|-=|=-++=.++..+++.++++|...+..+
T Consensus 92 ~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~ 127 (129)
T TIGR02801 92 PDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLI 127 (129)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 445688877888888889999999999999887764
No 174
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=26.85 E-value=2.1e+02 Score=23.13 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=35.5
Q ss_pred hcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 41 l~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
++.......+++.|+++.+..+.+ |.++|.+ .....+|..+|+|+..+
T Consensus 27 LGTGSTv~~~i~~L~~~~~~~~l~-i~~VptS--~~t~~~a~~~Gipl~~l 74 (228)
T PRK13978 27 IGTGSTMELLLPQMAQLIKERGYN-ITGVCTS--NKIAFLAKELGIKICEI 74 (228)
T ss_pred eCchHHHHHHHHHHHHHhhccCcc-EEEEeCc--HHHHHHHHHcCCcEech
Confidence 367888888999999888654454 5666653 55678898999997654
No 175
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=26.79 E-value=59 Score=26.27 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=27.1
Q ss_pred ccchHHHHHHHHHHHH--cCCeEEEEEEEeeChhhhhcc--CCCCeEEEEecc
Q 029741 135 VATGGTLSAAVRLLER--MGAEVVECACVVGLPEGQRRL--DGKPLYILVEPR 183 (188)
Q Consensus 135 i~TG~Tl~~~~~~L~~--~Ga~~v~v~~l~~~~~~~~~l--~~~~~~~l~~~~ 183 (188)
+.||+|....++.|-+ .+-..+.+++.-.. ....+ .|+|+.++-..+
T Consensus 26 lGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~~--t~~l~~~~GI~v~~l~~~~ 76 (227)
T COG0120 26 LGTGSTAAYFIEALGRRVKGELDIGGVPTSFQ--TEELARELGIPVSSLNEVD 76 (227)
T ss_pred EcCcHHHHHHHHHHHHhhccCccEEEEeCCHH--HHHHHHHcCCeecCccccC
Confidence 6899999999999963 11112222222222 22222 288888877665
No 176
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=26.53 E-value=1.4e+02 Score=20.36 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.++++|+++++ +|.....+...|+..|-+.+.
T Consensus 76 ~~~~~iv~yc~---~g~~s~~~~~~l~~~G~~~v~ 107 (118)
T cd01449 76 TPDKPVIVYCG---SGVTACVLLLALELLGYKNVR 107 (118)
T ss_pred CCCCCEEEECC---cHHHHHHHHHHHHHcCCCCee
Confidence 47889999974 577777888899999987543
No 177
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=26.40 E-value=1.7e+02 Score=19.20 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=22.0
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCe
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAE 154 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~ 154 (188)
+++.|+++.+ +|.....++..|+..|.+
T Consensus 55 ~~~~iv~~c~---~G~rs~~aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADD---DGVRADMTASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECC---CCChHHHHHHHHHHcCCE
Confidence 4678888875 576667788889999987
No 178
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=26.19 E-value=31 Score=26.83 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=14.5
Q ss_pred EcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 131 IDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 131 VDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
|=|++.||+|+++ .|-+++.
T Consensus 152 IvDiv~TG~TL~~-------NgL~~ie 171 (182)
T TIGR00070 152 IVDIVSTGTTLRE-------NGLRIIE 171 (182)
T ss_pred EEEEeCCHHHHHH-------CCCEEee
Confidence 4479999999976 5655554
No 179
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=26.17 E-value=59 Score=25.63 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCChhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhc
Q 029741 8 LRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRD 60 (188)
Q Consensus 8 ~~~~~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~ 60 (188)
|...|.+++|-+.++.+|++-..+=......-+..+++.+..+++.|.+...+
T Consensus 1 ~~~~~~i~~LI~~l~kLPGvG~KsA~R~AfhLL~~~~~~~~~la~al~~a~~~ 53 (198)
T COG0353 1 MMYPPPIEKLIDALKKLPGVGPKSAQRLAFHLLQRDREDVERLAKALLEAKEN 53 (198)
T ss_pred CCCcHHHHHHHHHHhhCCCCChhHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 34567899999999999987643311222333456889999999999876543
No 180
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=25.91 E-value=83 Score=20.79 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.+++.|+++++ +|.....++..|+..|.+.+.
T Consensus 59 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 90 (103)
T cd01447 59 AEDKPFVFYCA---SGWRSALAGKTLQDMGLKPVY 90 (103)
T ss_pred CCCCeEEEEcC---CCCcHHHHHHHHHHcChHHhE
Confidence 46789999975 566677888999999977543
No 181
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=25.76 E-value=78 Score=22.87 Aligned_cols=49 Identities=31% Similarity=0.385 Sum_probs=30.9
Q ss_pred CcccchHHHHHHHHH----HHHcCCeEEEEEEEeeChh-hhh-------ccCCCCeEEEEe
Q 029741 133 DLVATGGTLSAAVRL----LERMGAEVVECACVVGLPE-GQR-------RLDGKPLYILVE 181 (188)
Q Consensus 133 Dvi~TG~Tl~~~~~~----L~~~Ga~~v~v~~l~~~~~-~~~-------~l~~~~~~~l~~ 181 (188)
=.-.||.|+..+++. |+.+|.++..--......+ ++. .++|.|++.|+.
T Consensus 17 RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S~~I~inG~piE~~l~ 77 (120)
T PF10865_consen 17 RCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLESPTIRINGRPIEDLLG 77 (120)
T ss_pred chhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCCCeeeECCEehhHhhC
Confidence 345799999999998 5567888766554444332 211 234777766653
No 182
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=25.60 E-value=2.5e+02 Score=23.90 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhH-HHHHHHhCCCeEEEe
Q 029741 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIALAIGAKFVPLR 92 (188)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a-~~lA~~l~~p~~~~~ 92 (188)
+....+...+.+.+.+.++|+|+.-..+...+| ...|..+++|++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hve 124 (365)
T TIGR03568 76 KSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIH 124 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEE
Confidence 344455556666667778999999887766665 455667899998653
No 183
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=25.59 E-value=2.7e+02 Score=27.12 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 158 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v 158 (188)
..|.+||++||--.. ...+...|+..|+.++.+
T Consensus 687 l~g~~vLlvdD~~~~---r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 687 LDGVTVLLDITSEEV---RKIVTRQLENWGATCITP 719 (894)
T ss_pred CCCCEEEEEeCCHHH---HHHHHHHHHHCCCEEEEc
Confidence 478899999998765 344556788899887543
No 184
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=25.49 E-value=1.7e+02 Score=23.96 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=46.7
Q ss_pred hhHHHHhhcccccCCCCCCCceEEechhhhcCHH--HHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeE
Q 029741 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHK--AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFV 89 (188)
Q Consensus 12 ~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~--~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~ 89 (188)
...++|.+.+.+.|+|-......+|+..+-.+.+ .+..+ ...++..+. .++|+..+.-... ..|..+|.|..
T Consensus 32 ~l~~~L~~ki~~aP~FF~~~PvVlDl~~l~~~~~~~dl~~L----~~~Lr~~gl-~~vGV~g~~~~~~-~~a~~~gL~~l 105 (248)
T PRK04596 32 RLVQEMRERVTRAPKLFGRAAVILDFGGLSQVPDLATAKAL----LDGLRSAGV-LPVALAYGTSEID-LLSQQLGLPLL 105 (248)
T ss_pred HHHHHHHHHHHhChHhhCCCcEEEEchhhcCccccccHHHH----HHHHHHCCC-EEEEEeCCCHHHH-HHHHHCCCCcc
Confidence 3457888899999998887788999999854332 23333 334444454 6788876654432 34444677754
Q ss_pred E
Q 029741 90 P 90 (188)
Q Consensus 90 ~ 90 (188)
.
T Consensus 106 ~ 106 (248)
T PRK04596 106 A 106 (248)
T ss_pred c
Confidence 3
No 185
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=25.30 E-value=97 Score=26.66 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCChhh--HHHHHHHhCCCeEEE
Q 029741 49 DTVDIFVDRYRDMGISVVAGIEARGFVF--GPSIALAIGAKFVPL 91 (188)
Q Consensus 49 ~l~~~la~~~~~~~~d~Iv~v~~gG~~~--a~~lA~~l~~p~~~~ 91 (188)
...+.+.+.. ..+++.|++++.||.+- +-.+|..+|+|++..
T Consensus 79 ~a~~~le~~~-g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 79 RAVEALEKYL-GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp HHHHHHHHHT-T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred HHHHHHHHhh-CCCccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 3334444433 34699999999999864 444567799998764
No 186
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=25.26 E-value=77 Score=21.74 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCCCEEEEEcCcccchHH-----HHHHHHHHHHc
Q 029741 123 EPGERALVIDDLVATGGT-----LSAAVRLLERM 151 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~T-----l~~~~~~L~~~ 151 (188)
-.|+.|+++||+-..-.. ....++++...
T Consensus 47 Y~~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 47 YQGQPVVIIDDFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred cCCCcEEEEeecCccccccchHHHHHHHHHHhcC
Confidence 369999999999887754 55555555444
No 187
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=24.99 E-value=1.7e+02 Score=24.87 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=36.0
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHH-HHHHHhCCCeEEE
Q 029741 33 MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPL 91 (188)
Q Consensus 33 ~~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~-~lA~~l~~p~~~~ 91 (188)
.+.+... ...-.....+...+...+...+||+|+....+.-.+|. ..|..+++|++.+
T Consensus 39 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hi 97 (346)
T PF02350_consen 39 YLLDSDS-QSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHI 97 (346)
T ss_dssp EE--STT-S-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEE
T ss_pred ccccccc-chHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEe
Confidence 3434333 33345555666666777777799999998888777764 4566679998775
No 188
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.41 E-value=3.2e+02 Score=21.13 Aligned_cols=56 Identities=11% Similarity=-0.047 Sum_probs=33.7
Q ss_pred EEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCC--------hhhHHHHHHHhCCCeEE
Q 029741 34 FQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARG--------FVFGPSIALAIGAKFVP 90 (188)
Q Consensus 34 ~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG--------~~~a~~lA~~l~~p~~~ 90 (188)
..|+.+-.+-......+.+.=.+.+- ..||+|++=...- -..|.++|+.+|+|+.-
T Consensus 97 iFDlT~eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 97 IFDLTSEQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred EEeccchHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 34555444444444555555555553 2688877644322 24788999999999853
No 189
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.40 E-value=3.1e+02 Score=22.62 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.3
Q ss_pred hcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEE
Q 029741 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 41 l~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~ 90 (188)
-.+|......++.|.. +.++++|+++...+...+..++...++|++.
T Consensus 53 ~~~p~~a~~~~~~li~---~~~v~~iiG~~~s~~~~~~~~~~~~~ip~i~ 99 (347)
T cd06336 53 KYDPAEAAANARRLVQ---QDGVKFILGPIGGGITAAQQITERNKVLLLT 99 (347)
T ss_pred CCCHHHHHHHHHHHHh---hcCceEEEeCCCCchhhhhhhhhhcCceEEe
Confidence 4578777766666653 3378899998877776667788888988764
No 190
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=24.27 E-value=61 Score=24.62 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=16.0
Q ss_pred CCCChhhHHHHHHHhCCCeEE
Q 029741 70 EARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 70 ~~gG~~~a~~lA~~l~~p~~~ 90 (188)
..||-.+|..||..||.|+..
T Consensus 9 Gsgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 9 GSGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp TSSHHHHHHHHHHHCT--EE-
T ss_pred CCChHHHHHHHHHHcCCccCC
Confidence 368899999999999999864
No 191
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.04 E-value=1.9e+02 Score=23.53 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=25.4
Q ss_pred hcCCCcEEEEeCCCC--hhhHHHHHHHhCCCeEEEee
Q 029741 59 RDMGISVVAGIEARG--FVFGPSIALAIGAKFVPLRK 93 (188)
Q Consensus 59 ~~~~~d~Iv~v~~gG--~~~a~~lA~~l~~p~~~~~k 93 (188)
+..++|++|+=+.|| +.-=...|..+|+|++.+++
T Consensus 187 ~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~R 223 (248)
T PRK08057 187 RQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIAR 223 (248)
T ss_pred HHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeC
Confidence 344789999988888 44344567888999887654
No 192
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=23.52 E-value=2e+02 Score=18.98 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCe
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAE 154 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~ 154 (188)
.+++.|+++ -.+|.....++..|++.|..
T Consensus 59 ~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 366777776 45787888899999999987
No 193
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=23.48 E-value=1.7e+02 Score=21.87 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCChh-hHHHHHHHhCCCeEE
Q 029741 51 VDIFVDRYRDMGISVVAGIEARGFV-FGPSIALAIGAKFVP 90 (188)
Q Consensus 51 ~~~la~~~~~~~~d~Iv~v~~gG~~-~a~~lA~~l~~p~~~ 90 (188)
++.+++.+.+.+++.+++++.++.. +...+...-+++++.
T Consensus 4 ~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~ 44 (172)
T PF02776_consen 4 AEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIP 44 (172)
T ss_dssp HHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeec
Confidence 5667777777788888888877743 344443332454444
No 194
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=3.1e+02 Score=23.58 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=42.5
Q ss_pred CCCChhHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHHhc-----CCCcEEEEeCC--------CCh
Q 029741 8 LRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRD-----MGISVVAGIEA--------RGF 74 (188)
Q Consensus 8 ~~~~~~~~~~~~~~r~~~~~~~~g~~~~d~~~ll~~~~~~~~l~~~la~~~~~-----~~~d~Iv~v~~--------gG~ 74 (188)
+-++...+|+....++-+-.|+- ......+.+...+.+.+.+ .++|+|.-... -|.
T Consensus 23 ilan~~~sq~~~h~~~GGVvPe~-----------Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~ 91 (342)
T COG0533 23 ILANVVASQIELHARYGGVVPEL-----------ASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGA 91 (342)
T ss_pred hhheehhhcccccCCCCCcCccH-----------HHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHH
Confidence 44444555555444554555532 2334444555555444432 26888776543 345
Q ss_pred hhHHHHHHHhCCCeEEE
Q 029741 75 VFGPSIALAIGAKFVPL 91 (188)
Q Consensus 75 ~~a~~lA~~l~~p~~~~ 91 (188)
.+|..+|..+++|++-+
T Consensus 92 ~~Ak~LA~a~~kPli~V 108 (342)
T COG0533 92 TAAKALALALNKPLIPV 108 (342)
T ss_pred HHHHHHHHHhCCCEeec
Confidence 78999999999999765
No 195
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=23.25 E-value=3e+02 Score=22.23 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 48 KDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
....+.+.+.+...++|+|++= ..+++...|...++|.+.+
T Consensus 80 ~~~~~~~~~~l~~~~pDlVIsD---~~~~~~~aa~~~giP~i~i 120 (318)
T PF13528_consen 80 ARRIRREIRWLREFRPDLVISD---FYPLAALAARRAGIPVIVI 120 (318)
T ss_pred HHHHHHHHHHHHhcCCCEEEEc---ChHHHHHHHHhcCCCEEEE
Confidence 3444555566777789999985 3455667788899998764
No 196
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.75 E-value=3.4e+02 Score=21.96 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=31.7
Q ss_pred hcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhhH--HHHHHHhCCCeEE
Q 029741 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG--PSIALAIGAKFVP 90 (188)
Q Consensus 41 l~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~a--~~lA~~l~~p~~~ 90 (188)
-.+|......++.|.. +.+++.|+++-.++...+ ..++...++|++.
T Consensus 49 ~~~p~~a~~~a~~li~---~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~ 97 (312)
T cd06346 49 QTDPAAGVAAATKLVN---VDGVPGIVGAACSGVTIAALTSVAVPNGVVMIS 97 (312)
T ss_pred CCCHHHHHHHHHHHHh---hcCCCEEEccccchhhHhhhhhhhccCCcEEEe
Confidence 4588777766666653 236888998766555443 4677777888765
No 197
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=22.74 E-value=1.9e+02 Score=24.77 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEeeCh
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~~ 165 (188)
..|++|||| .+|.+-..+++.|.+.|+..+. ++++.
T Consensus 172 l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~---v~nRt 207 (338)
T PRK00676 172 SKKASLLFI----GYSEINRKVAYYLQRQGYSRIT---FCSRQ 207 (338)
T ss_pred ccCCEEEEE----cccHHHHHHHHHHHHcCCCEEE---EEcCC
Confidence 589999975 7899999999999999986543 55554
No 198
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=22.73 E-value=1.5e+02 Score=20.18 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=21.4
Q ss_pred EEEEeCCCC-hhhHHHHHHHhCCCeEEE
Q 029741 65 VVAGIEARG-FVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 65 ~Iv~v~~gG-~~~a~~lA~~l~~p~~~~ 91 (188)
.|.|++..| -.+|..||..+|.+++.+
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 577888777 479999999999887543
No 199
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=22.65 E-value=2e+02 Score=23.40 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
..+++|+|+ .+|++-+.++..|.+.|...+.
T Consensus 121 ~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~ 151 (278)
T PRK00258 121 LKGKRILIL----GAGGAARAVILPLLDLGVAEIT 151 (278)
T ss_pred CCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEE
Confidence 578899876 6799999999999999965544
No 200
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=22.52 E-value=2.8e+02 Score=19.46 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=27.7
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEE
Q 029741 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (188)
Q Consensus 125 Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l 161 (188)
...|+|-=|=-.+=.++..+.+.++++|...+..+++
T Consensus 85 ~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 85 DTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3456666666666777888999999999888776653
No 201
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=22.50 E-value=2.6e+02 Score=23.77 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHh
Q 029741 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAI 84 (188)
Q Consensus 50 l~~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l 84 (188)
.+..+++.++..++|+||++-.|.. ..|..+|..+
T Consensus 68 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 68 NVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 3344444455567899999987665 5777777776
No 202
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=22.31 E-value=1.8e+02 Score=25.73 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=40.5
Q ss_pred EEechhhhcCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCh----hhHHHHHHHhCCCeEEE
Q 029741 34 FQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGF----VFGPSIALAIGAKFVPL 91 (188)
Q Consensus 34 ~~d~~~ll~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~----~~a~~lA~~l~~p~~~~ 91 (188)
-.|+..++.+++.+..+++++.....+ .|.|+=|+-=|. .+-..+...+|+|+.-+
T Consensus 194 ~~~iAr~L~~~~~~~~l~~~i~~~~~~--~~~v~lPAvlG~~~~~~~~~~L~~~~g~~v~E~ 253 (419)
T TIGR03378 194 SVDIARLLDKEENRNALADELSRLANG--ADLVVLPACFGLGDGLELLRELEQATGLTLCEL 253 (419)
T ss_pred hHHHHHHhcChhhHHHHHHHHHHhcCC--CCEEEECCeeCCCChHHHHHHHHHHHCCCEEeC
Confidence 357888888998888888888876653 366665554443 44578888999997654
No 203
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=22.28 E-value=2.2e+02 Score=21.24 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCC
Q 029741 51 VDIFVDRYRDMGISVVAGIEARG 73 (188)
Q Consensus 51 ~~~la~~~~~~~~d~Iv~v~~gG 73 (188)
++.+++.+.+.+++.|++++.+.
T Consensus 3 ~~~l~~~L~~~Gv~~vFgipG~~ 25 (164)
T cd07039 3 ADVIVETLENWGVKRVYGIPGDS 25 (164)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCc
Confidence 34455555555666666666554
No 204
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=22.26 E-value=2.2e+02 Score=18.04 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCC
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGA 153 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga 153 (188)
+..|..++=|++.-.++.|..++.+.++.++.
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASN 74 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence 66899999999999999999999999999987
No 205
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=22.05 E-value=83 Score=22.21 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=24.1
Q ss_pred CEEEEEcCcccchHH-----------------HHHHHHHHHHcCCeEEEE
Q 029741 126 ERALVIDDLVATGGT-----------------LSAAVRLLERMGAEVVEC 158 (188)
Q Consensus 126 k~VLIVDDvi~TG~T-----------------l~~~~~~L~~~Ga~~v~v 158 (188)
+++||-||...++.+ +..+++..++.|+++..+
T Consensus 39 ~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~ii 88 (113)
T PF03465_consen 39 ETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAKVEII 88 (113)
T ss_dssp EEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE
T ss_pred cEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCEEEEE
Confidence 477777777777643 677888888999976443
No 206
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=21.85 E-value=1.9e+02 Score=24.53 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEE
Q 029741 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (188)
Q Consensus 122 ~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~ 160 (188)
..+|++||||-|--.--.-+......++++..-.+++-.
T Consensus 177 ~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdG 215 (395)
T COG4825 177 DLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDG 215 (395)
T ss_pred hhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccc
Confidence 369999999999999999999999999999887777643
No 207
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=21.73 E-value=1.7e+02 Score=24.14 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~ 159 (188)
.+|++|+| +.+|++-++++-.|.+.|++.+.++
T Consensus 125 ~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~ 157 (283)
T PRK14027 125 AKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVA 157 (283)
T ss_pred cCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46888884 6899999999999999999876544
No 208
>PRK13947 shikimate kinase; Provisional
Probab=21.66 E-value=1.1e+02 Score=22.55 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=20.8
Q ss_pred EEEEeC-CCChhhHHHHHHHhCCCeEE
Q 029741 65 VVAGIE-ARGFVFGPSIALAIGAKFVP 90 (188)
Q Consensus 65 ~Iv~v~-~gG~~~a~~lA~~l~~p~~~ 90 (188)
+++|++ .|+-.+|..+|..||.|++.
T Consensus 5 ~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 566765 45568999999999999875
No 209
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=21.59 E-value=2.8e+02 Score=20.26 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=33.1
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCC-hhhHHHHHHHhCCC
Q 029741 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARG-FVFGPSIALAIGAK 87 (188)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG-~~~a~~lA~~l~~p 87 (188)
.+++....+++.+++.+....+-++.|....| -.++..++..++.+
T Consensus 3 ~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 3 PDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46777888999998887644443455655545 47899999999864
No 210
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.18 E-value=2e+02 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=22.1
Q ss_pred cccchHHHHHHHHHHHHcCCeEEEEEE
Q 029741 134 LVATGGTLSAAVRLLERMGAEVVECAC 160 (188)
Q Consensus 134 vi~TG~Tl~~~~~~L~~~Ga~~v~v~~ 160 (188)
|+.+|..-.++++.+++.|.+.+.+.+
T Consensus 7 IanrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 7 IANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp ESS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EECCCHHHHHHHHHHHHhCCcceeccC
Confidence 367899999999999999999877655
No 211
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=21.14 E-value=2.4e+02 Score=23.46 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=20.5
Q ss_pred EEEEeC-CCChhhHHHHHHHhCCCeEEE
Q 029741 65 VVAGIE-ARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 65 ~Iv~v~-~gG~~~a~~lA~~l~~p~~~~ 91 (188)
.++|.+ .|+-.+|..+|..||.|++.+
T Consensus 137 ~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 137 ALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 455544 566789999999999998753
No 212
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=20.94 E-value=1.3e+02 Score=24.19 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=31.7
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEeCCCChhh-HHHHHHHhCCCeEEE
Q 029741 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPL 91 (188)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~gG~~~-a~~lA~~l~~p~~~~ 91 (188)
.+|... +..+++.+...++.+|+|+..++... +..++..+++|++..
T Consensus 46 ~d~~~~---~~~~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~ 93 (328)
T cd06351 46 NDPFSL---LRAVCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISI 93 (328)
T ss_pred CChHHH---HHHHHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEe
Confidence 456443 34444444345788899988777654 477888999998764
No 213
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=20.88 E-value=51 Score=27.65 Aligned_cols=20 Identities=45% Similarity=0.606 Sum_probs=14.4
Q ss_pred EcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 131 IDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 131 VDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
|=|+++||+||+ +.|-+.+.
T Consensus 159 IvDivsTG~TLk-------aNgL~~id 178 (290)
T COG0040 159 IVDIVSTGTTLK-------ANGLKEIE 178 (290)
T ss_pred EEEeecCCHhHH-------HCCCEEEE
Confidence 348999999974 56666554
No 214
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=20.83 E-value=1.7e+02 Score=23.53 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=11.3
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHc
Q 029741 127 RALVIDDLVATGGTLSAAVRLLERM 151 (188)
Q Consensus 127 ~VLIVDDvi~TG~Tl~~~~~~L~~~ 151 (188)
..+|+|=-+.-|.=+.- +..+++.
T Consensus 48 DLILLDiYmPd~~Gi~l-L~~ir~~ 71 (224)
T COG4565 48 DLILLDIYMPDGNGIEL-LPELRSQ 71 (224)
T ss_pred CEEEEeeccCCCccHHH-HHHHHhc
Confidence 45555555555554433 3334433
No 215
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=20.76 E-value=96 Score=25.03 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.0
Q ss_pred ccchHHHHHHHHHHHHcC
Q 029741 135 VATGGTLSAAVRLLERMG 152 (188)
Q Consensus 135 i~TG~Tl~~~~~~L~~~G 152 (188)
+.||+|...+++.|.+..
T Consensus 27 LGTGSTv~~~i~~L~~~~ 44 (228)
T PRK13978 27 IGTGSTMELLLPQMAQLI 44 (228)
T ss_pred eCchHHHHHHHHHHHHHh
Confidence 579999999998887653
No 216
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.70 E-value=2.9e+02 Score=23.26 Aligned_cols=35 Identities=31% Similarity=0.241 Sum_probs=23.7
Q ss_pred HHHHhcCCCcEEEEeCCCChhhHHHHHHHhCCCeEEE
Q 029741 55 VDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (188)
Q Consensus 55 a~~~~~~~~d~Iv~v~~gG~~~a~~lA~~l~~p~~~~ 91 (188)
.+.+.+.++|+|+.=. -...+..+|+.+|+|++.+
T Consensus 97 ~~~~~~~~pDlvi~d~--~~~~~~~~A~~~giP~v~~ 131 (401)
T cd03784 97 VAAARDWGPDLVVADP--LAFAGAVAAEALGIPAVRL 131 (401)
T ss_pred HHHhcccCCCEEEeCc--HHHHHHHHHHHhCCCeEEe
Confidence 3334445889888755 2244677889999998764
No 217
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=20.63 E-value=4e+02 Score=20.42 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=21.1
Q ss_pred CCCCEEEEEcCcccch-HHHHHHHHHHHHcCCeEEE
Q 029741 123 EPGERALVIDDLVATG-GTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG-~Tl~~~~~~L~~~Ga~~v~ 157 (188)
....+++|||+.---+ ..+..+.+.+...|++.+.
T Consensus 91 ~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klil 126 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLIL 126 (196)
T ss_dssp -TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEE
T ss_pred CCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEE
Confidence 3556799999986655 4566666667676776544
No 218
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=20.61 E-value=1.3e+02 Score=26.04 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=30.4
Q ss_pred EEEEeCCCChhhHHHHHHHhCCCeEEEeecCCCCCccc
Q 029741 65 VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVI 102 (188)
Q Consensus 65 ~Iv~v~~gG~~~a~~lA~~l~~p~~~~~k~~~~~~~~~ 102 (188)
+|||..-.|..+|. +|..+|+.+..+.|+..+.+...
T Consensus 5 lIVGaGlsG~V~A~-~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 5 LIVGAGLSGAVIAE-VAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred EEECCchhHHHHHH-HHHHcCCEEEEEeccccCCCccc
Confidence 67888889999999 88889999888888877766543
No 219
>PLN02384 ribose-5-phosphate isomerase
Probab=20.53 E-value=99 Score=25.57 Aligned_cols=48 Identities=19% Similarity=0.057 Sum_probs=27.4
Q ss_pred cccchHHHHHHHHHHHHcCCe----EEEEEEEeeChhhhhcc--CCCCeEEEEecc
Q 029741 134 LVATGGTLSAAVRLLERMGAE----VVECACVVGLPEGQRRL--DGKPLYILVEPR 183 (188)
Q Consensus 134 vi~TG~Tl~~~~~~L~~~Ga~----~v~v~~l~~~~~~~~~l--~~~~~~~l~~~~ 183 (188)
-+.||+|...+++.|.+.... .+.++..-.. ..... .|+|+.++-+.+
T Consensus 54 GLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~--T~~~a~~~GIpl~~l~~v~ 107 (264)
T PLN02384 54 GLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKK--THEQAVSLGIPLSDLDSHP 107 (264)
T ss_pred EecchHHHHHHHHHHHHhhhhccccceEEEcCcHH--HHHHHHHcCCcEeccccCC
Confidence 368999999999888765432 1222222222 22222 278877776544
No 220
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=20.45 E-value=3.1e+02 Score=20.35 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCccc-chHHHHHHHHHHHHcCCeEEEEEEEeeC
Q 029741 123 EPGERALVIDDLVA-TGGTLSAAVRLLERMGAEVVECACVVGL 164 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~-TG~Tl~~~~~~L~~~Ga~~v~v~~l~~~ 164 (188)
..+.+|+||||.=. |-...+++.+.|++.....+.+.+.-+.
T Consensus 100 ~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 100 EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 36899999999987 6677788888888887776665554444
No 221
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=20.45 E-value=2e+02 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
++++|+++. .+|.+...++..|++.|...+.
T Consensus 63 ~~~~ivv~C---~~G~rs~~aa~~L~~~G~~~v~ 93 (117)
T cd01522 63 KDRPVLLLC---RSGNRSIAAAEAAAQAGFTNVY 93 (117)
T ss_pred CCCeEEEEc---CCCccHHHHHHHHHHCCCCeEE
Confidence 567888886 4677777888999999987654
No 222
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.35 E-value=2e+02 Score=23.82 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEE
Q 029741 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (188)
Q Consensus 123 ~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~ 159 (188)
.+|++++| +.+|++-++++..|...|++.+.++
T Consensus 122 ~~~k~vlv----lGaGGaarAi~~~l~~~g~~~i~i~ 154 (288)
T PRK12749 122 IKGKTMVL----LGAGGASTAIGAQGAIEGLKEIKLF 154 (288)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 47889886 4789998888888989998876544
No 223
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=20.35 E-value=2.9e+02 Score=22.22 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEE
Q 029741 121 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (188)
Q Consensus 121 ~~~~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~ 157 (188)
.+.+|++++|++.--+.-..+..+.+.++..|++.+.
T Consensus 119 ~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 119 DLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp TTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred cccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 3458999999977766667888999999999987554
No 224
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=20.09 E-value=2.8e+02 Score=23.41 Aligned_cols=42 Identities=2% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCh-hhHHHHHHHhCCCeEEEeec
Q 029741 52 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKP 94 (188)
Q Consensus 52 ~~la~~~~~~~~d~Iv~v~~gG~-~~a~~lA~~l~~p~~~~~k~ 94 (188)
..+++.+.+ +.|+|+++-.|.. ..|..+|...++|++.+-.+
T Consensus 71 ~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 71 GRVLKELER-DTDLIIAVGSGTINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred HHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHhcCCCEEEecCc
Confidence 333444444 7899999987665 57888888888998776543
No 225
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=20.04 E-value=2.6e+02 Score=20.78 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=30.1
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029741 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (188)
Q Consensus 124 ~Gk~VLIVDDvi~TG~Tl~~~~~~L~~~Ga~~v~v~~l~~ 163 (188)
+|.+|.+|=| ..++|.+..+..+...|.. +..++.-+
T Consensus 1 ~gl~i~~vGD--~~~rv~~Sl~~~~~~~g~~-~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGD--GHNRVAHSLIELLAKFGME-VVLIAPEG 37 (158)
T ss_dssp TTEEEEEESS--TTSHHHHHHHHHHHHTTSE-EEEESSGG
T ss_pred CCCEEEEECC--CCChHHHHHHHHHHHcCCE-EEEECCCc
Confidence 4789999999 6689999999999999998 55555444
Done!