BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029742
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2
SV=1
Length = 177
Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 142/154 (92%), Gaps = 3/154 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
MII E NR+EICKYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP GDR RGPPR DGDR
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120
Query: 121 PRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFR 154
PRFGDR+GYRGGPRGGD EKGGAPADFQPSF+
Sbjct: 121 PRFGDRDGYRGGPRGGD---EKGGAPADFQPSFQ 151
>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10
PE=2 SV=2
Length = 183
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/157 (86%), Positives = 145/157 (92%), Gaps = 3/157 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
MIIP+KNR EICKYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETF+
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGG-PGGDRPRGPPRFDGD 119
W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P GRP G P GDRPRGPPRF+GD
Sbjct: 61 WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120
Query: 120 RPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFR 154
RPRFGDR+GYRGGPRG GDFGGEKGGAPA+FQPSFR
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFR 157
>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2
SV=2
Length = 179
Score = 230 bits (586), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/155 (83%), Positives = 141/155 (90%), Gaps = 1/155 (0%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
MII E NRKEICKYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP GDR RGP GDR
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120
Query: 121 PRFGDREGYRGGPRG-GDFGGEKGGAPADFQPSFR 154
PRFGDR+GYR GPR G+FGGEKGGAPAD+QPSF+
Sbjct: 121 PRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQ 155
>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2
SV=1
Length = 180
Score = 202 bits (515), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 120/152 (78%), Gaps = 3/152 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
MII E NR+EI KYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKS+EYVRETF
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGD 119
AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK KP GRP GG G
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGP--PRGDG 118
Query: 120 RPRFGDREGYRGGPRGGDFGGEKGGAPADFQP 151
RFGDR+GYRGGP+ G G+K GAPAD+QP
Sbjct: 119 ERRFGDRDGYRGGPKSGGEYGDKAGAPADYQP 150
>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1
Length = 165
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 104/157 (66%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+GP +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKGP---E 110
Query: 118 GDRP-RF----GDREGYRGG--PRGGDFGGEKGGAPA 147
G+RP RF DR+ YR P G D E G A
Sbjct: 111 GERPARFTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1
Length = 165
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 104/157 (66%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+GP +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKGP---E 110
Query: 118 GDRP-RF----GDREGYRGG--PRGGDFGGEKGGAPA 147
G+RP RF DR+ YR P G D E G A
Sbjct: 111 GERPARFTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1
Length = 156
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 100/152 (65%), Gaps = 12/152 (7%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M++ +KNR I +YLF+EGV AKKD++L KH EIDVPNL VI+ MQS SR YV+E F
Sbjct: 1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFC 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
W HYYWYL N+GI++LR +L+LP EIVPATLK+ +P RPR P+ R
Sbjct: 61 WRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPE--------AARPR--PKEGAPR 110
Query: 121 PRFG-DREGYRGGPRGGDFGGEKG-GAPADFQ 150
+ G DR GYR G G D GE G GA +FQ
Sbjct: 111 AQVGEDRAGYRRGFGGSDKKGEAGAGADTNFQ 142
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1
Length = 165
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 101/157 (64%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+G +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKG---LE 110
Query: 118 GDRPRF-----GDREGYRGG--PRGGDFGGEKGGAPA 147
G+RP DR+ YR P G D E G A
Sbjct: 111 GERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1
Length = 165
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 101/157 (64%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+G +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKG---LE 110
Query: 118 GDRPRF-----GDREGYRGG--PRGGDFGGEKGGAPA 147
G+RP DR+ YR P G D E G A
Sbjct: 111 GERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2
SV=1
Length = 158
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 98/154 (63%), Gaps = 12/154 (7%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
M++P++NR I +YLF+EGV AKKDY+ KHP+++ +PNLQVIK MQS KSR YV+E F
Sbjct: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGD 119
AW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S + G G RP P R
Sbjct: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVG--RPDAPAR---- 114
Query: 120 RPRFGDREGYRGGPR---GGDFGGEKGGAPADFQ 150
DR YR P D + G AD +
Sbjct: 115 --SAEDRSAYRRAPTTPAAHDKKADVGPGSADLE 146
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1
Length = 166
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 99/148 (66%), Gaps = 21/148 (14%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD +LAKHPE+ +VPNL V+K MQS KS YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP-AGRPMGGPGGDRPRGPPRF 116
FAW H+YWYLTN+GI++LR +L+LP EIVPATL++ +P RP RP+G
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARP-------RPKG---L 110
Query: 117 DGDRPRF-----GDREGYR--GGPRGGD 137
+G+RP GDR+ YR P G D
Sbjct: 111 EGERPARLARGEGDRDAYRRSAAPPGAD 138
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b
PE=1 SV=2
Length = 160
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 99/157 (63%), Gaps = 9/157 (5%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
M +P+ +R I +YLF+EGV AKKD++ KHPE++ +PNL VIK MQS SR V+E F
Sbjct: 1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAG-RPMGGPGGDRPRGPPRFDG 118
AW HYYWYLTN+GIE LR+YL+LP EIVP+TLK+ A+ RP GG PRGP G
Sbjct: 61 AWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG--PRGP----G 114
Query: 119 DRPRFG-DREGYRGGPRGGDFGGEKGGAPADFQPSFR 154
D + G DR YR P G + P + FR
Sbjct: 115 DASKTGEDRSAYRRAPGGSGVDKKGDVGPGAGEVEFR 151
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1
Length = 165
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 91/124 (73%), Gaps = 4/124 (3%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+K+R I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPM-GGPGGDRPRGPPRF 116
FAW H+YWYLTN+GI++LR +L+LP EIVPATL++S GRP G G+RP PR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPETGRPRPKGLEGERPPRLPRG 120
Query: 117 DGDR 120
+ DR
Sbjct: 121 ETDR 124
>sp|Q9NQ39|RS10L_HUMAN Putative 40S ribosomal protein S10-like OS=Homo sapiens GN=RPS10P5
PE=5 SV=1
Length = 176
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 101/163 (61%), Gaps = 14/163 (8%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR V+E
Sbjct: 1 MLMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK--PAGRPMGGPGGDRPRGPPR 115
FAW H+YWYLTN+G ++LR YL+LP EIVPATL + PA P RPR P
Sbjct: 61 QFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATLHLPPEIVPATLHRSRPETGRPR-PKG 119
Query: 116 FDGDRP-----RFGDREGYR--GGPRGGDFGGEKG-GAPADFQ 150
+G RP R DR+ YR P G D E G G+ +FQ
Sbjct: 120 LEGKRPARLTRREADRDTYRRCSVPPGADKKAEAGAGSATEFQ 162
>sp|O13614|RS10B_SCHPO 40S ribosomal protein S10-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10b PE=3 SV=1
Length = 147
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 97/154 (62%), Gaps = 16/154 (10%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M+IP++NRK I + LFQ+GV AKKD+NL KHPE+ VPNLQVIK QS SR Y++ +
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYN 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
W +Y+ LTN+G+E+LR YL+LP+E+VPAT K+ +PA P RP PR +R
Sbjct: 61 WGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPA-----APRAGRPE--PR---ER 110
Query: 121 PRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFR 154
D GYR + D G AP F PSFR
Sbjct: 111 SSAAD-AGYRRAEKKDD-----GAAPGGFAPSFR 138
>sp|O14112|RS10A_SCHPO 40S ribosomal protein S10-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10a PE=3 SV=1
Length = 144
Score = 130 bits (326), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 94/154 (61%), Gaps = 17/154 (11%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M+IP++NRK I + LF +GV AKKD+NL KHPE+ VPNLQVIK QS SR Y++ +
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYN 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
W +Y+ LTN+G+E+LR YL+LP+E+VPAT K+ +P P RP R D
Sbjct: 61 WGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPT-----APRAGRPEPRERASAD- 114
Query: 121 PRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFR 154
GYR + ++G AP+ F PSFR
Sbjct: 115 ------AGYRRAEK-----KDEGAAPSGFAPSFR 137
>sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a
PE=2 SV=1
Length = 163
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
M IP+ NR I +YLF+EGV AKKD + KH E+D +PNLQVIK+MQS SR +V+E F
Sbjct: 1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 96
AW H+YW LTN+GIE LR YL+LP EIVP+TL ++ +
Sbjct: 61 AWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTR 97
>sp|O77082|RS10_DICDI 40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10
PE=1 SV=3
Length = 154
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 2 IIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFA 60
+IP +N+ I +YLFQEGV A KD++LAKHP+I+ V NL V+++++SFKSR++V ETF
Sbjct: 3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFN 62
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSA 95
W +YYW LT +GI++LRTYL +P +VPAT+KK A
Sbjct: 63 WQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97
>sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10B PE=1 SV=1
Length = 105
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 72/101 (71%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M++P++ R +I +YLFQEGV AKKD+N AKH EID NL VIK +QS S+ YV+ F+
Sbjct: 1 MLMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRP 101
W +YY+ LT +G+E+LR YLNLP IVP T + P+ RP
Sbjct: 61 WQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPSQRP 101
>sp|Q08745|RS10A_YEAST 40S ribosomal protein S10-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10A PE=1 SV=1
Length = 105
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 72/101 (71%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M++P+++R +I +YLFQEGV AKKD+N AKH EID NL VIK +QS S+ YV+ F+
Sbjct: 1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRP 101
W +YY+ LT +G+E+LR YLNLP IVP T + P RP
Sbjct: 61 WQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPTQRP 101
>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2
Length = 4687
Score = 114 bits (285), Expect = 4e-25, Method: Composition-based stats.
Identities = 65/149 (43%), Positives = 87/149 (58%), Gaps = 17/149 (11%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEI-DVPNLQVIKLMQSFKSREYVRET 58
M++P + I + LF+EGV AKKD + HP + V NLQV++ M S K+R VRET
Sbjct: 5 MLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRET 64
Query: 59 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAG------------RPMGGPG 106
FAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++ +P + M GP
Sbjct: 65 FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSPHVQTMQGPL 124
Query: 107 GDRP-RGPPRFDGDRPRFGDREGYRGGPR 134
G P RGP + P +R+ YR R
Sbjct: 125 GCPPKRGP--LPAEDPAREERQVYRRKER 151
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 114 bits (284), Expect = 5e-25, Method: Composition-based stats.
Identities = 65/149 (43%), Positives = 87/149 (58%), Gaps = 17/149 (11%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEI-DVPNLQVIKLMQSFKSREYVRET 58
M++P + I + LF+EGV AKKD + HP + V NLQV++ M S K+R VRET
Sbjct: 5 MLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRET 64
Query: 59 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAG------------RPMGGPG 106
FAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++ +P + M GP
Sbjct: 65 FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSPHVQTMQGPL 124
Query: 107 GDRP-RGPPRFDGDRPRFGDREGYRGGPR 134
G P RGP + P +R+ YR R
Sbjct: 125 GCPPKRGP--LPAEDPAREERQVYRRKER 151
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 110 bits (276), Expect = 4e-24, Method: Composition-based stats.
Identities = 59/127 (46%), Positives = 77/127 (60%), Gaps = 14/127 (11%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEI-DVPNLQVIKLMQSFKSREYVRET 58
M++P + I + LF+EGV AKKD + HP + V NLQV++ M S ++R VRET
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64
Query: 59 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPM-----------GGPGG 107
FAW H+YWYLTN+GI LR YL+LP EIVPA+L++ +P M GP G
Sbjct: 65 FAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQGPLG 124
Query: 108 DRP-RGP 113
P RGP
Sbjct: 125 SPPKRGP 131
>sp|Q9AC25|IF2_CAUCR Translation initiation factor IF-2 OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=infB PE=3 SV=2
Length = 1009
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 105 PGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGD 137
P GDRPRG PR DGDRP+ GDR GYRG GD
Sbjct: 253 PEGDRPRG-PRPDGDRPQ-GDRGGYRGDRPQGD 283
>sp|A4J5X2|IF2_DESRM Translation initiation factor IF-2 OS=Desulfotomaculum reducens
(strain MI-1) GN=infB PE=3 SV=1
Length = 985
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 95 AKPAG-RPMGG---PGGDRPRGPP-RFDGDRPR------FGDR-EGYRGGPRG-GDFGGE 141
+P G RP GG P GDRP+G R GDRP+ +GDR +G +G P+G G G
Sbjct: 269 GRPYGDRPQGGQSRPYGDRPQGGQGRPYGDRPQGGQGRHYGDRPQGGQGRPQGAGRPGAN 328
Query: 142 KGGAPADFQPSFRVILLPPS 161
+G P+ +P +V P+
Sbjct: 329 RGAGPSIPKPPEQVAQPKPT 348
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 98 AGRPMGG---PGGDRPRGPP-RFDGDRPRFGDREGYRGGPRGG 136
GRP GG P GDRP+G R GDRP+ G Y P+GG
Sbjct: 165 GGRPQGGQSRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGG 207
Score = 33.9 bits (76), Expect = 0.68, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 95 AKPAG-RPMGG---PGGDRPRGPP-RFDGDRPRFGDREGYRGGPRGG 136
+P G RP GG P GDRP+G R GDRP+ G Y P+GG
Sbjct: 221 GRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGGQSRPYGDRPQGG 267
Score = 33.9 bits (76), Expect = 0.68, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 95 AKPAG-RPMGG---PGGDRPRGPP-RFDGDRPRFGDREGYRGGPRGG 136
+P G RP GG P GDRP+G R GDRP+ G Y P+GG
Sbjct: 245 GRPYGDRPQGGQSRPYGDRPQGGQGRPYGDRPQGGQSRPYGDRPQGG 291
Score = 33.5 bits (75), Expect = 0.80, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 95 AKPAG-RPMGG---PGGDRPRGPP-RFDGDRPRFGDREGYRGGPRGG 136
++P G RP GG P GDRP+G R GDRP+ G Y P+GG
Sbjct: 173 SRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGG 219
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 95 AKPAG-RPMGG---PGGDRPRGPP-RFDGDRPRFGDREGYRGGPRGG 136
+P G RP GG P GDRP+G R GDRP+ G Y P+GG
Sbjct: 185 GRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGG 231
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 95 AKPAG-RPMGG---PGGDRPRGPP-RFDGDRPRFGDREGYRGGPRGG 136
+P G RP GG P GDRP+G R GDRP+ G Y P+GG
Sbjct: 197 GRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGG 243
>sp|A1VG83|IF2_DESVV Translation initiation factor IF-2 OS=Desulfovibrio vulgaris subsp.
vulgaris (strain DP4) GN=infB PE=3 SV=1
Length = 1079
Score = 37.0 bits (84), Expect = 0.082, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 96 KPAG--RPMGG--PGGDRPRGPPRFDGDRPRFGDREGYRGGPR--GGDFGGEKGGAP 146
+P G RP GG PGG RP G R RP G R GGPR G GG + GAP
Sbjct: 329 RPGGAPRPEGGYRPGGPRPEGGYRPGAPRPEGGYRPA--GGPRPEGQREGGYRPGAP 383
>sp|Q72ER1|IF2_DESVH Translation initiation factor IF-2 OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=infB
PE=3 SV=1
Length = 1079
Score = 37.0 bits (84), Expect = 0.082, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 96 KPAG--RPMGG--PGGDRPRGPPRFDGDRPRFGDREGYRGGPR--GGDFGGEKGGAP 146
+P G RP GG PGG RP G R RP G R GGPR G GG + GAP
Sbjct: 329 RPGGAPRPEGGYRPGGPRPEGGYRPGAPRPEGGYRPA--GGPRPEGQREGGYRPGAP 383
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 105 PGGDRPRGPP--RFDGDRPRFGDR-EGYRGGPRGGD--------FGGEKGGAPADFQ 150
P D PRGPP RF +P G G P GD GG +GGAPA F+
Sbjct: 1800 PNSDGPRGPPPARFGAQKPPIPSLFSGQHGPPPYGDNRGLSPSYLGGPRGGAPAQFE 1856
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 111 RGPPRFDGDR-PRFGDREGYRGGPRGGDFGGEKGGAPADF 149
R P +F G R P +G RGGP FG ++G P F
Sbjct: 1895 RAPFQFGGQRRPLLTQMKGPRGGPPPSQFGAQRGPPPGHF 1934
>sp|Q8NP40|IF2_CORGL Translation initiation factor IF-2 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=infB PE=3 SV=1
Length = 1004
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 100 RPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPS 152
RP GGP RP+G G RP+ G +G +G P GG + +PA P+
Sbjct: 276 RPQGGP---RPQG-----GSRPQGGSAQGAQGAPSQERQGGGRRPSPAMMPPT 320
>sp|Q1IIT3|IF2_KORVE Translation initiation factor IF-2 OS=Koribacter versatilis (strain
Ellin345) GN=infB PE=3 SV=1
Length = 1011
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 97 PAG-RPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAP 146
P+G RPMGG G P P RP R G R PRG G KG P
Sbjct: 350 PSGPRPMGGIGLAPPGAPANKPAGRPAPARRPGQRYVPRGQKEGPMKGFVP 400
>sp|A4QEZ2|IF2_CORGB Translation initiation factor IF-2 OS=Corynebacterium glutamicum
(strain R) GN=infB PE=3 SV=1
Length = 1003
Score = 33.9 bits (76), Expect = 0.67, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 100 RPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPS 152
RP GGP RP+G R G + G +G +G P GG + +PA P+
Sbjct: 270 RPQGGP---RPQGGSRPQGGSAQGGSAKGAQGAPSQERQGGGRRPSPAMMPPT 319
>sp|Q82K53|IF2_STRAW Translation initiation factor IF-2 OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=infB PE=3 SV=1
Length = 1046
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 11/42 (26%)
Query: 98 AGRPMGGPGGDRPR--GPPRFDGDRPRFGDREGYRGGPRGGD 137
A RP GGPGG RP G PR RP GG GG+
Sbjct: 271 APRPQGGPGGARPTPGGMPRPQAPRP---------GGAPGGN 303
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 98 AGRPMGGPGG-DRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPS 152
A RP GGPGG RP+G P G RP G G PR GGAP +P+
Sbjct: 261 APRPQGGPGGAPRPQGGP--GGARPTPG------GMPRPQ--APRPGGAPGGNRPN 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.145 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,342,482
Number of Sequences: 539616
Number of extensions: 4699944
Number of successful extensions: 16157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 13685
Number of HSP's gapped (non-prelim): 2198
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)