Query 029742
Match_columns 188
No_of_seqs 169 out of 233
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 04:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_7 Plectin/S10 domain cont 100.0 1E-66 3.5E-71 426.0 9.4 128 1-138 1-131 (162)
2 3u5c_K 40S ribosomal protein S 100.0 3.1E-65 1.1E-69 393.7 7.5 102 1-102 1-102 (105)
3 1ub9_A Hypothetical protein PH 95.9 0.0038 1.3E-07 42.6 2.3 72 4-80 14-88 (100)
4 3f6o_A Probable transcriptiona 95.8 0.0056 1.9E-07 44.6 2.9 72 4-81 16-87 (118)
5 3cuo_A Uncharacterized HTH-typ 95.6 0.012 4.1E-07 40.1 3.8 72 4-80 22-93 (99)
6 3f6v_A Possible transcriptiona 95.4 0.01 3.4E-07 46.0 3.1 72 4-81 56-127 (151)
7 1tbx_A ORF F-93, hypothetical 95.2 0.017 5.7E-07 40.1 3.7 46 35-80 36-81 (99)
8 3jth_A Transcription activator 95.1 0.005 1.7E-07 42.9 0.6 71 4-80 21-91 (98)
9 2oqg_A Possible transcriptiona 94.0 0.047 1.6E-06 38.3 3.6 70 5-80 20-89 (114)
10 2qvo_A Uncharacterized protein 93.9 0.054 1.8E-06 37.8 3.7 46 35-80 40-85 (95)
11 3pqk_A Biofilm growth-associat 93.5 0.016 5.5E-07 40.6 0.5 72 3-80 20-91 (102)
12 2bv6_A MGRA, HTH-type transcri 92.7 0.09 3.1E-06 37.6 3.4 68 8-80 39-109 (142)
13 2kko_A Possible transcriptiona 92.3 0.095 3.3E-06 37.6 3.1 71 4-80 23-93 (108)
14 2zkz_A Transcriptional repress 92.1 0.18 6.1E-06 35.6 4.3 71 5-81 26-96 (99)
15 1xmk_A Double-stranded RNA-spe 92.0 0.028 9.6E-07 40.5 -0.0 66 5-76 10-76 (79)
16 1u2w_A CADC repressor, cadmium 91.9 0.1 3.6E-06 38.2 3.0 70 5-79 41-110 (122)
17 2gxg_A 146AA long hypothetical 91.8 0.13 4.4E-06 36.7 3.3 44 36-79 61-107 (146)
18 2nnn_A Probable transcriptiona 91.8 0.15 5.1E-06 36.0 3.5 45 35-79 62-109 (140)
19 2fbi_A Probable transcriptiona 91.7 0.15 5E-06 36.1 3.4 45 35-79 60-107 (142)
20 2hgc_A YJCQ protein; SR346, st 91.2 0.095 3.3E-06 39.7 2.2 64 7-78 6-75 (102)
21 1r7j_A Conserved hypothetical 91.2 0.1 3.5E-06 37.6 2.3 41 35-79 30-70 (95)
22 2esh_A Conserved hypothetical 91.2 0.18 6.3E-06 36.8 3.7 46 37-82 46-96 (118)
23 3bdd_A Regulatory protein MARR 91.1 0.13 4.5E-06 36.3 2.7 41 36-76 56-99 (142)
24 3df8_A Possible HXLR family tr 91.1 0.15 5.1E-06 37.0 3.0 68 3-76 24-93 (111)
25 2jsc_A Transcriptional regulat 91.1 0.18 6.2E-06 36.6 3.5 72 5-82 20-92 (118)
26 3tgn_A ADC operon repressor AD 91.0 0.094 3.2E-06 37.5 1.9 67 8-80 40-109 (146)
27 3oop_A LIN2960 protein; protei 90.5 0.15 5.3E-06 36.5 2.6 44 36-79 62-108 (143)
28 2eth_A Transcriptional regulat 90.4 0.2 7E-06 36.5 3.3 45 36-80 69-116 (154)
29 3b73_A PHIH1 repressor-like pr 90.4 0.1 3.4E-06 39.3 1.6 69 7-81 14-82 (111)
30 2rdp_A Putative transcriptiona 90.3 0.21 7.1E-06 35.8 3.2 45 36-80 67-114 (150)
31 2hr3_A Probable transcriptiona 90.2 0.19 6.4E-06 36.0 2.9 45 36-80 61-108 (147)
32 3l7w_A Putative uncharacterize 90.0 0.32 1.1E-05 35.1 3.9 48 35-82 36-87 (108)
33 1z7u_A Hypothetical protein EF 90.0 0.27 9.2E-06 35.3 3.5 70 3-78 19-92 (112)
34 3elk_A Putative transcriptiona 89.9 0.28 9.4E-06 36.4 3.7 47 37-83 45-96 (117)
35 2a61_A Transcriptional regulat 89.9 0.25 8.5E-06 35.1 3.3 44 36-79 58-104 (145)
36 3bja_A Transcriptional regulat 89.9 0.25 8.5E-06 34.7 3.2 45 35-79 57-104 (139)
37 2dql_A PEX protein; circadian 89.7 0.35 1.2E-05 35.7 4.1 46 35-80 52-103 (115)
38 1xma_A Predicted transcription 89.7 0.31 1.1E-05 37.5 3.9 47 36-82 73-124 (145)
39 3f8b_A Transcriptional regulat 89.6 0.39 1.3E-05 35.3 4.2 47 35-81 43-94 (116)
40 3bpv_A Transcriptional regulat 89.4 0.18 6.2E-06 35.5 2.3 44 36-79 54-100 (138)
41 1q1h_A TFE, transcription fact 89.3 0.063 2.2E-06 38.0 -0.2 65 6-74 18-88 (110)
42 1jgs_A Multiple antibiotic res 89.3 0.28 9.7E-06 34.6 3.2 45 36-80 59-106 (138)
43 3eco_A MEPR; mutlidrug efflux 89.2 0.28 9.4E-06 34.8 3.1 44 36-79 58-104 (139)
44 1lj9_A Transcriptional regulat 89.1 0.28 9.4E-06 34.9 3.0 44 36-79 54-100 (144)
45 2qww_A Transcriptional regulat 88.9 0.2 6.7E-06 36.2 2.2 46 36-81 66-116 (154)
46 2co5_A Viral protein F93; vira 88.8 0.27 9.4E-06 36.0 2.9 48 36-83 41-88 (99)
47 2hzt_A Putative HTH-type trans 88.7 0.24 8.3E-06 35.3 2.5 69 3-77 11-83 (107)
48 2fbh_A Transcriptional regulat 88.6 0.27 9.3E-06 34.8 2.7 44 36-79 63-109 (146)
49 2pg4_A Uncharacterized protein 88.4 0.27 9.3E-06 33.9 2.5 44 36-79 41-86 (95)
50 3cjn_A Transcriptional regulat 88.3 0.33 1.1E-05 35.5 3.0 46 35-80 76-124 (162)
51 3hhh_A Transcriptional regulat 88.3 0.47 1.6E-05 35.2 3.9 47 36-82 43-94 (116)
52 4esf_A PADR-like transcription 88.2 0.43 1.5E-05 35.4 3.7 48 36-83 41-93 (117)
53 1yg2_A Gene activator APHA; vi 87.5 0.32 1.1E-05 37.8 2.7 50 36-85 34-88 (179)
54 3bro_A Transcriptional regulat 87.5 0.25 8.5E-06 34.9 1.9 44 36-79 61-107 (141)
55 2fa5_A Transcriptional regulat 87.4 0.22 7.5E-06 36.3 1.6 45 36-80 74-121 (162)
56 3deu_A Transcriptional regulat 87.2 0.36 1.2E-05 36.2 2.8 45 36-80 79-126 (166)
57 3u2r_A Regulatory protein MARR 87.2 0.6 2.1E-05 34.6 3.9 46 36-81 73-121 (168)
58 3cdh_A Transcriptional regulat 87.1 0.33 1.1E-05 35.2 2.4 44 36-79 68-114 (155)
59 1s3j_A YUSO protein; structura 87.1 0.42 1.4E-05 34.4 3.0 46 35-80 61-109 (155)
60 3hsr_A HTH-type transcriptiona 86.9 0.3 1E-05 35.1 2.1 45 36-80 61-108 (140)
61 2nyx_A Probable transcriptiona 86.9 0.44 1.5E-05 35.5 3.1 44 36-79 70-116 (168)
62 3boq_A Transcriptional regulat 86.9 0.3 1E-05 35.5 2.1 44 36-79 73-119 (160)
63 3s2w_A Transcriptional regulat 86.8 0.46 1.6E-05 34.8 3.1 44 36-79 75-121 (159)
64 3bj6_A Transcriptional regulat 86.8 0.36 1.2E-05 34.6 2.5 44 36-79 65-111 (152)
65 3g3z_A NMB1585, transcriptiona 86.8 0.29 9.8E-06 35.1 1.9 44 36-79 56-102 (145)
66 1r1u_A CZRA, repressor protein 86.7 0.55 1.9E-05 33.2 3.4 68 5-78 25-93 (106)
67 3f3x_A Transcriptional regulat 86.6 0.6 2.1E-05 33.4 3.6 44 36-79 61-107 (144)
68 1okr_A MECI, methicillin resis 86.4 0.44 1.5E-05 33.6 2.7 42 37-78 40-82 (123)
69 4esb_A Transcriptional regulat 86.2 0.68 2.3E-05 34.1 3.7 47 36-82 39-90 (115)
70 1z91_A Organic hydroperoxide r 86.1 0.2 7E-06 35.8 0.8 67 8-79 42-111 (147)
71 3e6m_A MARR family transcripti 85.8 0.49 1.7E-05 34.8 2.8 46 35-80 77-125 (161)
72 2pex_A Transcriptional regulat 85.8 0.3 1E-05 35.3 1.6 45 35-79 71-118 (153)
73 3l4g_A Phenylalanyl-tRNA synth 85.7 0.15 5.3E-06 47.5 0.0 50 35-87 30-80 (508)
74 1sfx_A Conserved hypothetical 85.6 0.6 2.1E-05 31.3 3.0 69 6-79 20-90 (109)
75 1yyv_A Putative transcriptiona 85.4 0.66 2.3E-05 34.7 3.4 69 4-78 33-105 (131)
76 3k0l_A Repressor protein; heli 85.2 0.59 2E-05 34.4 3.0 45 36-80 71-118 (162)
77 4hbl_A Transcriptional regulat 84.7 0.46 1.6E-05 34.5 2.2 45 36-80 66-113 (149)
78 3jw4_A Transcriptional regulat 84.6 0.33 1.1E-05 35.0 1.4 45 36-80 68-115 (148)
79 3ech_A MEXR, multidrug resista 84.5 0.37 1.3E-05 34.5 1.5 44 36-79 62-108 (142)
80 1on2_A Transcriptional regulat 84.0 0.53 1.8E-05 34.1 2.2 41 35-78 32-72 (142)
81 2frh_A SARA, staphylococcal ac 83.8 0.45 1.5E-05 34.4 1.8 45 36-80 64-111 (127)
82 3ri2_A Transcriptional regulat 83.8 0.99 3.4E-05 34.0 3.7 47 35-81 48-98 (123)
83 3kp7_A Transcriptional regulat 83.7 0.48 1.7E-05 34.2 1.9 44 36-79 62-110 (151)
84 3nrv_A Putative transcriptiona 83.4 0.46 1.6E-05 34.0 1.7 45 36-80 65-112 (148)
85 2fsw_A PG_0823 protein; alpha- 83.4 0.67 2.3E-05 32.8 2.5 67 4-76 23-93 (107)
86 2e1n_A PEX, period extender; c 83.4 0.65 2.2E-05 35.7 2.6 48 35-82 64-117 (138)
87 3u1d_A Uncharacterized protein 83.3 0.77 2.6E-05 36.6 3.1 76 4-84 27-113 (151)
88 2d1h_A ST1889, 109AA long hypo 83.2 0.98 3.4E-05 30.4 3.2 47 35-81 46-98 (109)
89 2x4h_A Hypothetical protein SS 83.0 0.63 2.2E-05 33.5 2.3 41 35-79 41-81 (139)
90 3fm5_A Transcriptional regulat 81.1 0.75 2.6E-05 33.2 2.1 44 36-79 65-111 (150)
91 1r1t_A Transcriptional repress 80.5 1.4 4.7E-05 32.4 3.4 68 5-78 45-113 (122)
92 2fxa_A Protease production reg 80.3 0.99 3.4E-05 35.6 2.7 46 36-81 73-121 (207)
93 1y0u_A Arsenical resistance op 79.2 0.23 7.9E-06 34.4 -1.2 58 5-73 30-87 (96)
94 3l9f_A Putative uncharacterize 78.8 1.4 4.8E-05 35.8 3.3 50 36-85 68-122 (204)
95 3nqo_A MARR-family transcripti 78.6 1.4 4.9E-05 33.7 3.1 45 36-80 68-115 (189)
96 4aik_A Transcriptional regulat 77.3 1.8 6.2E-05 32.2 3.2 44 36-79 57-103 (151)
97 3aaf_A Werner syndrome ATP-dep 76.8 2.3 7.8E-05 32.5 3.7 50 37-86 65-116 (134)
98 4b8x_A SCO5413, possible MARR- 75.6 2.1 7.1E-05 31.6 3.1 44 36-79 62-108 (147)
99 2fbk_A Transcriptional regulat 74.8 0.7 2.4E-05 34.8 0.3 44 36-79 97-143 (181)
100 2qq9_A Diphtheria toxin repres 73.8 1.3 4.4E-05 35.5 1.7 48 35-85 34-95 (226)
101 3hrs_A Metalloregulator SCAR; 73.2 1.6 5.5E-05 34.9 2.1 50 35-87 30-93 (214)
102 2zfw_A PEX; five alpha-helices 72.6 0.77 2.6E-05 35.9 0.1 47 35-81 74-126 (148)
103 2lkp_A Transcriptional regulat 70.2 3.7 0.00013 28.9 3.3 70 5-80 31-101 (119)
104 2qlz_A Transcription factor PF 68.7 2.7 9.2E-05 34.9 2.6 66 4-75 10-81 (232)
105 2f2e_A PA1607; transcription f 66.0 2.8 9.7E-05 31.5 2.0 65 4-74 22-88 (146)
106 2wte_A CSA3; antiviral protein 65.9 2.8 9.6E-05 34.8 2.1 47 35-83 176-222 (244)
107 1fx7_A Iron-dependent represso 62.4 2.9 9.8E-05 33.4 1.5 39 36-77 35-73 (230)
108 2h09_A Transcriptional regulat 61.2 4.2 0.00014 29.8 2.1 41 36-79 65-105 (155)
109 2htj_A P fimbrial regulatory p 60.8 1.8 6E-05 29.2 -0.0 61 8-73 2-64 (81)
110 3cta_A Riboflavin kinase; stru 58.7 7.5 0.00026 30.8 3.3 74 6-79 7-81 (230)
111 2p4w_A Transcriptional regulat 58.1 1.8 6.1E-05 34.9 -0.4 67 4-76 13-84 (202)
112 4fx0_A Probable transcriptiona 57.2 4.4 0.00015 30.0 1.6 44 36-79 63-108 (148)
113 4a5n_A Uncharacterized HTH-typ 55.1 6.2 0.00021 29.9 2.2 66 5-76 25-94 (131)
114 2g9w_A Conserved hypothetical 55.0 7.7 0.00026 28.4 2.6 66 7-73 10-78 (138)
115 2p8t_A Hypothetical protein PH 51.0 6.4 0.00022 32.6 1.8 44 34-81 39-82 (200)
116 1bm9_A RTP, TER, replication t 47.1 19 0.00064 27.8 3.8 45 34-80 49-104 (122)
117 2heo_A Z-DNA binding protein 1 46.9 4.1 0.00014 27.2 0.0 56 7-69 11-66 (67)
118 2xvc_A ESCRT-III, SSO0910; cel 44.0 3.9 0.00013 28.6 -0.5 44 9-56 13-56 (59)
119 2vxz_A Pyrsv_GP04; viral prote 43.7 11 0.00036 31.0 2.0 60 6-71 11-70 (165)
120 1ku9_A Hypothetical protein MJ 31.7 27 0.00091 24.2 2.3 34 36-69 52-88 (152)
121 2dk5_A DNA-directed RNA polyme 31.3 15 0.0005 26.3 0.9 47 7-59 21-70 (91)
122 3l09_A Putative transcriptiona 31.2 36 0.0012 29.0 3.4 43 36-78 56-98 (266)
123 2o0m_A Transcriptional regulat 31.0 10 0.00035 32.1 0.0 61 6-76 20-81 (345)
124 1sd4_A Penicillinase repressor 29.2 48 0.0017 22.9 3.3 64 8-72 12-76 (126)
125 1p6r_A Penicillinase repressor 28.7 33 0.0011 22.6 2.3 61 6-67 9-69 (82)
126 2yu3_A DNA-directed RNA polyme 26.7 14 0.00049 27.2 0.1 48 7-60 38-88 (95)
127 3lwf_A LIN1550 protein, putati 25.4 11 0.00036 29.4 -0.8 56 1-60 20-79 (159)
128 3qph_A TRMB, A global transcri 23.9 24 0.00083 30.3 1.1 58 9-71 21-78 (342)
129 1oyi_A Double-stranded RNA-bin 23.6 18 0.00061 26.1 0.1 60 5-71 16-75 (82)
130 1p4x_A Staphylococcal accessor 23.2 50 0.0017 27.1 2.8 44 36-79 185-231 (250)
131 1qbj_A Protein (double-strande 21.0 15 0.00052 25.8 -0.7 62 3-70 7-71 (81)
No 1
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=100.00 E-value=1e-66 Score=426.02 Aligned_cols=128 Identities=32% Similarity=0.548 Sum_probs=97.5
Q ss_pred Cc-cchhhHHHHHHHhhhcceEEEeecCCCCCCCccc-cCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHH
Q 029742 1 MI-IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (188)
Q Consensus 1 Ml-ipKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~-VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~ 78 (188)
|| |||+||++|||+||||||||||||++ +||||+ ||||||||+||||+|||||||||||||||||||||||||||+
T Consensus 1 Ml~ipK~nR~~IYe~LFkeGV~VaKKD~~--kHpel~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~ 78 (162)
T 2xzm_7 1 MVHVLKATKIRIYKQLLQDGVFVLKKDFE--GHHEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKT 78 (162)
T ss_dssp -CCCCHHHHHHHHHHHHHHTEEEEESCSS--SBCTTTCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHhhcCcEEEecccc--CCCcccCcCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHH
Confidence 99 99999999999999999999999999 999997 999999999999999999999999999999999999999999
Q ss_pred hhCCCCC-CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCCC
Q 029742 79 YLNLPSE-IVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDF 138 (188)
Q Consensus 79 yLhLP~e-IVPaTlkk~~~~~~rp~~g~~g~rp~~~~r~~g~r~~~~dR~~YRr~~~~~~~ 138 (188)
|||||+| |||+||+++.+++.||+++ +++.+.+ |+..+||++||+++.++|+
T Consensus 79 yLhLP~e~IVPaTlk~~~~~~~rp~~~---~~~~r~~-----r~~~~dR~~YRr~~~pgG~ 131 (162)
T 2xzm_7 79 KLGISADNVIPKTFKASNVNFISKEED---EEERPRR-----QFNKGGRTGERDGRNKRGV 131 (162)
T ss_dssp HHCSSTTSCCCGGGSCCCCCCCCCCCC----------------------------------
T ss_pred HhCCCccccccchhccccCCCCCCCCC---CCCCCCC-----CCCCCChhhhhcccCCCCc
Confidence 9999999 9999999998887777642 1221111 1112689999997654443
No 2
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=100.00 E-value=3.1e-65 Score=393.68 Aligned_cols=102 Identities=53% Similarity=0.952 Sum_probs=95.3
Q ss_pred CccchhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 1 MlipKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
|||||+||++|||+||||||||||||+++|+|||++||||||||+||||+|||||||||||||||||||||||||||+||
T Consensus 1 MlipK~~r~~IYe~LFkEGV~vakKD~~~~kH~el~vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yL 80 (105)
T 3u5c_K 1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYL 80 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSEEECCSCSCCSSCSSSSSCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHT
T ss_pred CCccchhHHHHHHHHhhCCcEEEEcCCCCCCCCccCccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCCCCCC
Q 029742 81 NLPSEIVPATLKKSAKPAGRPM 102 (188)
Q Consensus 81 hLP~eIVPaTlkk~~~~~~rp~ 102 (188)
|||+|||||||++++++++||+
T Consensus 81 hLP~eivPaTl~~~~~~~~rp~ 102 (105)
T 3u5c_K 81 NLPEHIVPGTYIQERNPTQRPQ 102 (105)
T ss_dssp CCCSSCCSSCSCCSCC------
T ss_pred CCCchhcCccccccCCCCCCCC
Confidence 9999999999999887777763
No 3
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.88 E-value=0.0038 Score=42.58 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=53.9
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
....+..|...|.++|-+-. .|.. ..++++.=.|-..++.|...|+|...- .-+..||.||++|.+.+.+++
T Consensus 14 ~~~~~~~iL~~L~~~~~~~~-~ela----~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRRKAPF-SQIQ----KVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp HSHHHHHHHHHHHHHSEEEH-HHHH----HHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 45678899999987664322 2321 134577888999999999999998655 568899999999988776654
No 4
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.76 E-value=0.0056 Score=44.57 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=56.5
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhhC
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yLh 81 (188)
...+|..|...|.+ |-+.+ .|.. ..++++.=.|-+.++.|...|+|+..-.-|..||.||++|++-|.+++.
T Consensus 16 ~~~~R~~Il~~L~~-~~~~~-~eLa----~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~ 87 (118)
T 3f6o_A 16 ADPTRRAVLGRLSR-GPATV-SELA----KPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp TSHHHHHHHHHHHT-CCEEH-HHHH----TTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCH-HHHH----HHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHH
Confidence 45689999999985 43322 2332 2456888889999999999999998877899999999999988876654
No 5
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.56 E-value=0.012 Score=40.09 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=53.6
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
....+..|...|.+.|-+-. +|.. ..++++.=.|-+.++.|.+.|+|...-.=|..||.||++|++-|-+.|
T Consensus 22 ~~~~~~~il~~l~~~~~~s~-~ela----~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 22 SHPKRLLILCMLSGSPGTSA-GELT----RITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp CSHHHHHHHHHHTTCCSEEH-HHHH----HHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 34677888888876533321 1211 134578888999999999999998877788999999999998777655
No 6
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.35 E-value=0.01 Score=46.04 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=57.2
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhhC
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yLh 81 (188)
...+|..|...|.++.+-| .+.. ..++++.=.|-+.|+.|+..|+|+..=..|..||.||++|++-|.+.+.
T Consensus 56 ~~p~R~~IL~~L~~~~~t~--~eLa----~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~ 127 (151)
T 3f6v_A 56 AEPTRRRLVQLLTSGEQTV--NNLA----AHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFD 127 (151)
T ss_dssp TSHHHHHHHHHGGGCCEEH--HHHH----TTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCH--HHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 4467999999998544322 2321 2456788889999999999999998888999999999999999988763
No 7
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.24 E-value=0.017 Score=40.13 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=39.9
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
++++.=.|.+.++.|..+|||.....=|..++.||++|.+.+.+..
T Consensus 36 l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 36 FPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 4567778999999999999999887779999999999999987643
No 8
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.08 E-value=0.005 Score=42.89 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=54.5
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
...+|..|.+.|.+ |-+-+. |.. ..++++.=.|-+.++.|...|+|+..-.-++.||.||+++++-|-++|
T Consensus 21 ~~~~r~~Il~~L~~-~~~~~~-ela----~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 21 ANERRLQILCMLHN-QELSVG-ELC----AKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp CSHHHHHHHHHTTT-SCEEHH-HHH----HHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc-CCCCHH-HHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 45678899999876 433221 211 134578888999999999999998888888999999999998877765
No 9
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=94.03 E-value=0.047 Score=38.27 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=51.5
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
..+|..|.+.| .+|-+- -.|. ...++++.=.|-..++.|...|+|...-.-|..||.||++|++.+.+.+
T Consensus 20 ~~~r~~IL~~L-~~~~~~-~~el----a~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~ 89 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQS-ASSL----ATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTL 89 (114)
T ss_dssp CHHHHHHHHHH-HHSCBC-HHHH----HHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred ChHHHHHHHHH-HcCCCC-HHHH----HHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHH
Confidence 45678888888 554321 1121 1134578888999999999999998766678999999999998776655
No 10
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.91 E-value=0.054 Score=37.78 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=39.4
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
++++.=.|.++++.|..+|||...-.-|-.++.||++|.+++.+..
T Consensus 40 l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 40 VNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHH
Confidence 4578889999999999999996666778889999999999987643
No 11
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=93.53 E-value=0.016 Score=40.65 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=52.9
Q ss_pred cchhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 3 ipKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
+....|..|...|.+ |-+-+ .|. -..++++.=.|-+.++.|...|+|...-.-++.||.||+++++-+-+.|
T Consensus 20 l~~~~r~~Il~~L~~-~~~~~-~el----a~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l 91 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE-GEFSV-GEL----EQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNAL 91 (102)
T ss_dssp HCSHHHHHHHHHHHT-CCBCH-HHH----HHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHH
Confidence 345678899999964 42111 121 1123577778999999999999998877778999999999997766654
No 12
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=92.72 E-value=0.09 Score=37.57 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHhh
Q 029742 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 8 r~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~yL 80 (188)
...|...|.+.|- +..+|.. ..+.++.=.|.++++.|.++|||...-. -|..|+.||++|.+.+.+..
T Consensus 39 ~~~iL~~l~~~~~-~~~~ela----~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 39 QFLVLTILWDESP-VNVKKVV----TELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp HHHHHHHHHHSSE-EEHHHHH----HHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-cCHHHHH----HHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 3456666665543 2222321 1234666678999999999999988765 78899999999999988754
No 13
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.33 E-value=0.095 Score=37.60 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=52.9
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhh
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (188)
....|..|...|.+ |-+- -+|.. ..++++.=.|-+.++.|+..|+|+..-.-+..||.||++++.-+.+.|
T Consensus 23 ~~~~r~~IL~~L~~-~~~s-~~eLa----~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l 93 (108)
T 2kko_A 23 ANGRRLQILDLLAQ-GERA-VEAIA----TATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALV 93 (108)
T ss_dssp TTSTTHHHHHHHTT-CCEE-HHHHH----HHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCcC-HHHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 34567888888864 4332 12321 134688888999999999999998777778899999999997776665
No 14
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=92.08 E-value=0.18 Score=35.62 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=54.7
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhhC
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yLh 81 (188)
..+|.+|...|..+|-+-+. |.. ..++++.=.|-+.++.|+.. +|+..-.-++.||.||+++++-+.++|.
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~-ela----~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVT-QII----QILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHH-HHH----HHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHCCCcCHH-HHH----HHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence 45788999877776643322 221 23468888899999999999 9987778899999999999988887764
No 15
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.99 E-value=0.028 Score=40.45 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=50.1
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCH-HHHHHhhccccccccceeeeceeeEEeechhhHHHH
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNL-QVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFL 76 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL-~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYL 76 (188)
...+.+|.++|.+.|=+-|+ |.- .+|+|+-- .|-+.|++|...|+|..+=.=|- .|.||++|-+.+
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~-eiA----~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~~~ 76 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSAL-NLA----KNIGLTKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHH-HHH----HHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHHTTT
T ss_pred hhHHHHHHHHHHHcCCcCHH-HHH----HHcCCCcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHHhHh
Confidence 35678999999999866544 321 14568888 99999999999999974433355 999999997654
No 16
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=91.93 E-value=0.1 Score=38.16 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=48.7
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHh
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~y 79 (188)
..+|..|...|.++|-+-+. |.. ..++++.=.|-+.++.|+..|+|...-.-++.||.||+++++-+-+.
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~-eLa----~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~ 110 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVC-DIA----NILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMI 110 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHH-HHH----HHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHH-HHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHH
Confidence 45678899998865543322 221 13467888899999999999999876666889999999998655443
No 17
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=91.82 E-value=0.13 Score=36.68 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=37.7
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
+++.=.|.++++.|..+|||...-. -|..|+.||++|.+++.+.
T Consensus 61 ~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 107 (146)
T 2gxg_A 61 FVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG 107 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHH
Confidence 4777789999999999999987643 7889999999999988764
No 18
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=91.76 E-value=0.15 Score=35.96 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=37.9
Q ss_pred cccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
++++.=.|.++++.|.++|||...- .-|..++.||++|.+.+.+.
T Consensus 62 l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 62 TAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 3577788999999999999998753 46888999999999888764
No 19
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.65 E-value=0.15 Score=36.07 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=37.9
Q ss_pred cccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
+.++.=.|.++++.|..+|||...- .-|..++.||++|.+.+.+.
T Consensus 60 l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 60 ACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 3577778999999999999998653 46889999999999988753
No 20
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=91.23 E-value=0.095 Score=39.72 Aligned_cols=64 Identities=22% Similarity=0.196 Sum_probs=48.3
Q ss_pred hHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeE------EeechhhHHHHHH
Q 029742 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYY------WYLTNDGIEFLRT 78 (188)
Q Consensus 7 nr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyY------w~LTnEGIeYLR~ 78 (188)
-.-+|..+|.++|. +. .+..++|+.-+-..+++.|...||++-..-|+.-+ =.+|-+||+||.|
T Consensus 6 iiYkIL~~L~~~~~-------~i-s~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~E 75 (102)
T 2hgc_A 6 LRYAILKEIFEGNT-------PL-SENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKE 75 (102)
T ss_dssp CHHHHHHHHHHHCS-------CC-CHHHHTSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHH
T ss_pred eHHHHHHHHHhCCC-------cC-CHHhcCCCHHHHHHHHHHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHH
Confidence 35678888887432 22 23456799999999999999999999876655422 2489999999998
No 21
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.22 E-value=0.1 Score=37.62 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=34.2
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~y 79 (188)
++++.=.+-+.+..|+++|||... ... +.||++|.+.|.++
T Consensus 30 ~~ls~~~~~~~l~~L~~~GLI~~~-~~~---~~LT~kG~~~l~~l 70 (95)
T 1r7j_A 30 ANLSYALTGRYIKMLMDLEIIRQE-GKQ---YMLTKKGEELLEDI 70 (95)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE-TTE---EEECHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHCCCeEEE-CCe---eEEChhHHHHHHHH
Confidence 357888899999999999999876 333 88999999888754
No 22
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=91.20 E-value=0.18 Score=36.80 Aligned_cols=46 Identities=11% Similarity=0.263 Sum_probs=36.3
Q ss_pred cCC-HHHHHHhhccccccccceeee----ceeeEEeechhhHHHHHHhhCC
Q 029742 37 VPN-LQVIKLMQSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNL 82 (188)
Q Consensus 37 VpN-L~ViKamqSLkSrGyVkEqFa----WrhyYw~LTnEGIeYLR~yLhL 82 (188)
+.. =.|..+++.|...|+|+..-. =+.-||.||++|.+.|.+++..
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 555 567889999999999987642 2456779999999999987654
No 23
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=91.10 E-value=0.13 Score=36.31 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=36.8
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHH
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFL 76 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYL 76 (188)
+++.=.|.++++.|..+|+|...-+ -|..++.||++|.+++
T Consensus 56 ~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 56 QIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 5778889999999999999987765 7889999999999998
No 24
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=91.09 E-value=0.15 Score=37.03 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=49.3
Q ss_pred cchhhHHHHHHHhhhcceEE-EeecCCCCCCCcc-ccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHH
Q 029742 3 IPEKNRKEICKYLFQEGVCY-AKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFL 76 (188)
Q Consensus 3 ipKknr~aIYe~LFkEGVmV-aKKD~~~pkHpel-~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYL 76 (188)
+..+.|..|...|. +|-+- --.|.. ..+ +|..=.+.+.++.|...|+|+..-. +..+|.||++|.+.+
T Consensus 24 l~~~wrl~IL~~L~-~g~~~~~~~eL~----~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 24 LGKKYTMLIISVLG-NGSTRQNFNDIR----SSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVR 93 (111)
T ss_dssp HHSTTHHHHHHHHT-SSSSCBCHHHHH----HTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHH
T ss_pred HcCccHHHHHHHHh-cCCCCCCHHHHH----HHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHH
Confidence 34566778888887 44331 012221 235 4777789999999999999988777 999999999997654
No 25
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.07 E-value=0.18 Score=36.65 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=50.4
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHH-hhCC
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT-YLNL 82 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~-yLhL 82 (188)
...|..|...|. +|-+-+ .|. -..++++.=.|-+.++.|+..|+|...-.-++.||.||+++++-+-+ .+.+
T Consensus 20 ~~~r~~IL~~L~-~~~~~~-~eL----a~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~~~ 92 (118)
T 2jsc_A 20 DPTRCRILVALL-DGVCYP-GQL----AAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELVQV 92 (118)
T ss_dssp SHHHHHHHHHHH-TTCCST-TTH----HHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHH-cCCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHHHH
Confidence 457888999876 332100 010 11235888889999999999999987766788999999999954444 4444
No 26
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=90.98 E-value=0.094 Score=37.51 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=43.8
Q ss_pred HHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 8 r~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
...|...|.+.| +..+|.. ..++++.=.|.++++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 40 ~~~iL~~l~~~~--~t~~eLa----~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 40 QEHILMLLSEES--LTNSELA----RRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHHTTCC--CCHHHHH----HHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHH----HHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 445666666555 2222221 123578888999999999999998766 688999999999999987754
No 27
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=90.48 E-value=0.15 Score=36.49 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=37.4
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
+++.=.|.+.++.|..+|||..+- .-|..++.||++|.+.+.+.
T Consensus 62 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 62 KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHH
Confidence 477788999999999999998764 56789999999999998764
No 28
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=90.41 E-value=0.2 Score=36.50 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=38.2
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
+++.=.|.++++.|..+|||...- .-|..+++||++|.+.+.+..
T Consensus 69 ~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 116 (154)
T 2eth_A 69 STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL 116 (154)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence 477788999999999999998764 467889999999999987643
No 29
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=90.37 E-value=0.1 Score=39.31 Aligned_cols=69 Identities=16% Similarity=0.289 Sum_probs=50.4
Q ss_pred hHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhhC
Q 029742 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 7 nr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yLh 81 (188)
...+|.+.|-++|-+-+. +. ..+-++++.--.|-+.++.|...|+|+.. . |. +|.||++|.+||.+.+.
T Consensus 14 ~d~~IL~~L~~~g~~s~~-eL--A~~l~~giS~~aVs~rL~~Le~~GLV~~~-~-rg-~Y~LT~~G~~~l~~~~d 82 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPK-EL--EDRDEIRISKSSVSRRLKKLADHDLLQPL-A-NG-VYVITEEGEAYLNGEYD 82 (111)
T ss_dssp HHHHHHHHHHHHSCBCHH-HH--HTSTTCCSCHHHHHHHHHHHHHTTSEEEC-S-TT-CEEECHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCCCHH-HH--HHHHhcCCCHHHHHHHHHHHHHCCCEEec-C-Cc-eEEECchHHHHHHHHHH
Confidence 356899999887844322 22 12222267888999999999999999875 3 33 99999999999975443
No 30
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=90.31 E-value=0.21 Score=35.84 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=36.2
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
+++.=.|.++++.|..+|||...- .-|..|+.||++|.+.+.+..
T Consensus 67 ~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 67 YLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 578888999999999999998754 468889999999999887643
No 31
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.25 E-value=0.19 Score=35.96 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=36.0
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
+++.=.|.++++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 61 ~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 61 RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 477788999999999999998763 468889999999998887543
No 32
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=89.97 E-value=0.32 Score=35.10 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=38.6
Q ss_pred cccCCHHHHHHhhccccccccceeee----ceeeEEeechhhHHHHHHhhCC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNL 82 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFa----WrhyYw~LTnEGIeYLR~yLhL 82 (188)
+++..=.|..+++.|...|+|...-. =+.-||.||++|.+.|.+....
T Consensus 36 ~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 36 ASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred hCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 35677789999999999999987532 2467899999999999887543
No 33
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=89.96 E-value=0.27 Score=35.33 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=48.9
Q ss_pred cchhhHHHHHHHhhhcceEEEeecCCCCCCCcc-ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHH
Q 029742 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRT 78 (188)
Q Consensus 3 ipKknr~aIYe~LFkEGVmVaKKD~~~pkHpel-~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~ 78 (188)
+..+.+..|...|.++++- -.|.. ..+ +|..=.|...++.|...|+|...-. -|..+|.||++|.+.+..
T Consensus 19 l~~~~~~~IL~~L~~~~~~--~~eLa----~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~ 92 (112)
T 1z7u_A 19 INGKWKLSLMDELFQGTKR--NGELM----RALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDA 92 (112)
T ss_dssp TCSTTHHHHHHHHHHSCBC--HHHHH----HHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHH
T ss_pred HcCccHHHHHHHHHhCCCC--HHHHH----HHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHH
Confidence 3445566777777643321 12221 234 5778889999999999999987654 588999999999876653
No 34
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=89.90 E-value=0.28 Score=36.42 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=37.6
Q ss_pred cCCHHHHHHhhccccccccceeee-----ceeeEEeechhhHHHHHHhhCCC
Q 029742 37 VPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLP 83 (188)
Q Consensus 37 VpNL~ViKamqSLkSrGyVkEqFa-----WrhyYw~LTnEGIeYLR~yLhLP 83 (188)
++.=.|..+++.|...|+|...-. =+--||.||++|.++|.+++..-
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~ 96 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQAL 96 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTH
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 455678999999999999987532 24567899999999999987653
No 35
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=89.87 E-value=0.25 Score=35.12 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=37.7
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
+++.=.|..+++.|..+|||...- .-|..++.||++|.+.+.+.
T Consensus 58 ~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 58 GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 477778999999999999998864 45788999999999988764
No 36
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=89.86 E-value=0.25 Score=34.75 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=37.2
Q ss_pred cccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
++++.=.|.++++.|..+|||...- .-|..|.+||++|.+.+.+.
T Consensus 57 l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (139)
T 3bja_A 57 MGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQV 104 (139)
T ss_dssp CSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHH
Confidence 3467777899999999999998653 46888999999999988764
No 37
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=89.67 E-value=0.35 Score=35.67 Aligned_cols=46 Identities=0% Similarity=-0.002 Sum_probs=37.5
Q ss_pred cccCCHHHHHHhhccccccccceeee------ceeeEEeechhhHHHHHHhh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFa------WrhyYw~LTnEGIeYLR~yL 80 (188)
+++..=.|..+++.|...|+|...-. =+--||.||++|.+.|.+++
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~ 103 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLA 103 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHH
Confidence 45677788999999999999986532 13578999999999998876
No 38
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=89.67 E-value=0.31 Score=37.46 Aligned_cols=47 Identities=11% Similarity=0.324 Sum_probs=37.5
Q ss_pred ccCCHHHHHHhhccccccccceeee-----ceeeEEeechhhHHHHHHhhCC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 82 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa-----WrhyYw~LTnEGIeYLR~yLhL 82 (188)
.|..=.|..+++.|...|||+..-. =+--||.||++|.+.|.+++..
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 124 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE 124 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 4667778899999999999977542 1456779999999999987643
No 39
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=89.58 E-value=0.39 Score=35.32 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=37.9
Q ss_pred cccCCHHHHHHhhccccccccceee-----eceeeEEeechhhHHHHHHhhC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETF-----AWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqF-----aWrhyYw~LTnEGIeYLR~yLh 81 (188)
+++..=.|..+++.|...|+|...- .=+--||.||++|.+.|.+.+.
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~ 94 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFE 94 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 3567778999999999999998653 1346788999999999988763
No 40
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=89.43 E-value=0.18 Score=35.52 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=37.4
Q ss_pred ccCCHHHHHHhhcccccccccee---eeceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEq---FaWrhyYw~LTnEGIeYLR~y 79 (188)
+++.=.|.++++.|..+|||... ..-|..++.||++|.+.+.+.
T Consensus 54 ~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (138)
T 3bpv_A 54 HVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI 100 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHH
Confidence 47777899999999999999875 346888999999999888764
No 41
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=89.34 E-value=0.063 Score=38.04 Aligned_cols=65 Identities=17% Similarity=0.413 Sum_probs=47.7
Q ss_pred hhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhcccccccccee------eeceeeEEeechhhHH
Q 029742 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRET------FAWMHYYWYLTNDGIE 74 (188)
Q Consensus 6 knr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEq------FaWrhyYw~LTnEGIe 74 (188)
.++..|...|++.|--+...+.. ..++|+-=.|-++++.|.+.|+|... -+|..+||.++.+.|.
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa----~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~ 88 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIA----NQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQIN 88 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHH----HTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC
T ss_pred hHHHHHHHHHHHcCCCCCHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHH
Confidence 45678888888776212222321 24568888999999999999999754 6788889999998773
No 42
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=89.30 E-value=0.28 Score=34.64 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=38.1
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
+++.=.|.++++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 59 ~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 59 SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 577778999999999999998753 468889999999999987654
No 43
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=89.25 E-value=0.28 Score=34.85 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=36.8
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||...- .-|..+..||++|.+.+.+.
T Consensus 58 ~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~ 104 (139)
T 3eco_A 58 QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAF 104 (139)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHH
Confidence 477778999999999999998764 47889999999999998764
No 44
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=89.08 E-value=0.28 Score=34.95 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=37.7
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||...- .-|..+..||++|.+.+.+.
T Consensus 54 ~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (144)
T 1lj9_A 54 KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 100 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHH
Confidence 477778999999999999998765 46889999999999988754
No 45
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=88.89 E-value=0.2 Score=36.25 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=39.1
Q ss_pred ccCCHHHHHHhhccccccccce-----eeeceeeEEeechhhHHHHHHhhC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRE-----TFAWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkE-----qFaWrhyYw~LTnEGIeYLR~yLh 81 (188)
.++.=.|..+++.|..+|||.. .-.-|..++.||++|.+.+.+...
T Consensus 66 ~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~ 116 (154)
T 2qww_A 66 IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTA 116 (154)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHh
Confidence 4777789999999999999987 345788999999999999887653
No 46
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=88.79 E-value=0.27 Score=35.98 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=38.2
Q ss_pred ccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhhCCC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLP 83 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP 83 (188)
++..=.+.-+++.|...|+|...-.=+--||.||++|.+.|.+++.-+
T Consensus 41 ~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 41 DISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp BCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 456677889999999999998753223568899999999999987543
No 47
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=88.69 E-value=0.24 Score=35.29 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHhhhcceEEEeecCCCCCCCcc-ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHH
Q 029742 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLR 77 (188)
Q Consensus 3 ipKknr~aIYe~LFkEGVmVaKKD~~~pkHpel-~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR 77 (188)
+..+.+..|...|. +|-+- -.|.. ..+ +|..=.|...++.|...|+|+..-. =|..+|.||++|.+.+.
T Consensus 11 l~~~~~~~IL~~L~-~~~~~-~~eLa----~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 11 IGGKWKXVILXHLT-HGKKR-TSELK----RLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HCSTTHHHHHHHHT-TCCBC-HHHHH----HHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HcCccHHHHHHHHH-hCCCC-HHHHH----HHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 44566777888887 44321 11221 134 5677789999999999999987654 67899999999976554
No 48
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.56 E-value=0.27 Score=34.82 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.7
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
+++.=.|.++++.|..+|||...- .-|..+..||++|.+.+.+.
T Consensus 63 ~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 63 GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 477788999999999999998754 36888999999999988764
No 49
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=88.37 E-value=0.27 Score=33.91 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=36.6
Q ss_pred ccCCHH-HHHHhhccccccccce-eeeceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQ-VIKLMQSFKSREYVRE-TFAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~-ViKamqSLkSrGyVkE-qFaWrhyYw~LTnEGIeYLR~y 79 (188)
+++.=. |.+.++.|..+|||+. .-.-|..++.||++|.+.+.+.
T Consensus 41 ~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~ 86 (95)
T 2pg4_A 41 GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECL 86 (95)
T ss_dssp CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHH
Confidence 478888 9999999999999972 2345788999999999988764
No 50
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=88.32 E-value=0.33 Score=35.47 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=38.6
Q ss_pred cccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
+.++.=.|.++++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 76 l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 124 (162)
T 3cjn_A 76 AVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW 124 (162)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3577888999999999999998754 578899999999999887643
No 51
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=88.31 E-value=0.47 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=37.2
Q ss_pred ccCCHHHHHHhhccccccccceeee-----ceeeEEeechhhHHHHHHhhCC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 82 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa-----WrhyYw~LTnEGIeYLR~yLhL 82 (188)
++..=.+..+++.|...|+|..... =+--||.||++|.++|.+++.-
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~ 94 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 4666688999999999999986531 1356889999999999887643
No 52
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=88.24 E-value=0.43 Score=35.37 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=37.9
Q ss_pred ccCCHHHHHHhhccccccccceeee-----ceeeEEeechhhHHHHHHhhCCC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLP 83 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa-----WrhyYw~LTnEGIeYLR~yLhLP 83 (188)
+|..=.|..+++.|...|+|..... =+--||.||++|.+.|.+++...
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~ 93 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKW 93 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 3556688999999999999987631 13568899999999999877554
No 53
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=87.54 E-value=0.32 Score=37.77 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=39.0
Q ss_pred ccCCHHHHHHhhccccccccceeeec-----eeeEEeechhhHHHHHHhhCCCCC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFAW-----MHYYWYLTNDGIEFLRTYLNLPSE 85 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFaW-----rhyYw~LTnEGIeYLR~yLhLP~e 85 (188)
++..=+|..+++.|...|+|...-.= +--+|.||++|.+.|.+++.-|.+
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~~~ 88 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTA 88 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCC
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCccc
Confidence 46777899999999999999854321 345669999999999999988754
No 54
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=87.52 E-value=0.25 Score=34.93 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=36.9
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
+++.=.|.++++.|..+|||...-. -|..+..||++|.+.+.+.
T Consensus 61 ~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~ 107 (141)
T 3bro_A 61 SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETII 107 (141)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHH
Confidence 4777789999999999999987653 6788999999998777654
No 55
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=87.37 E-value=0.22 Score=36.30 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=34.0
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
+++.=.|.++++.|..+|||...- .-|..++.||++|.+++.+..
T Consensus 74 ~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 74 AMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 477788999999999999998654 467788999999999887643
No 56
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=87.19 E-value=0.36 Score=36.23 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=35.0
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
.|..=.|.++++.|..+|||..+- .-|..+..||++|.+.+.+..
T Consensus 79 ~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 79 GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 577888999999999999998765 567899999999999887643
No 57
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=87.17 E-value=0.6 Score=34.55 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=36.7
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHhhC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~yLh 81 (188)
.|..=.|.++++.|..+|||..+-. =|..+.+||++|.+.+.+...
T Consensus 73 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 73 ISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp ---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 4677789999999999999987654 688899999999988876543
No 58
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=87.11 E-value=0.33 Score=35.22 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=35.4
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
+++.=.|.++++.|..+|||...- .-|..+++||++|.+.+.+.
T Consensus 68 ~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 114 (155)
T 3cdh_A 68 LMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESL 114 (155)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHH
Confidence 477788999999999999998643 46778899999999988764
No 59
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=87.08 E-value=0.42 Score=34.39 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=38.3
Q ss_pred cccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHhh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~yL 80 (188)
++++.=.|.++++.|..+|||...-. -|..++.||++|.+.+.+..
T Consensus 61 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (155)
T 1s3j_A 61 MEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL 109 (155)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 35788889999999999999987643 57889999999998887543
No 60
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=86.91 E-value=0.3 Score=35.13 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=35.6
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
.++.=.|.++++.|..+|||..+- .=|..+..||++|.+.+.+..
T Consensus 61 ~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 61 FLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 477888999999999999998764 458889999999999887643
No 61
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=86.89 E-value=0.44 Score=35.50 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=37.5
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||..+-. -|..++.||++|.+.+.+.
T Consensus 70 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 70 GVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 5788889999999999999987543 7889999999999887653
No 62
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=86.87 E-value=0.3 Score=35.48 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=33.7
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||..+- .-|..+..||++|.+++.+.
T Consensus 73 ~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 119 (160)
T 3boq_A 73 KVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQA 119 (160)
T ss_dssp SSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHH
Confidence 466777889999999999998753 56889999999999988764
No 63
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=86.85 E-value=0.46 Score=34.76 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=36.7
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||...- .-|..+..||++|.+.+.+.
T Consensus 75 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 75 KIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 477778999999999999998765 56788999999999988764
No 64
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=86.83 E-value=0.36 Score=34.61 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=37.4
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|..+++.|..+|||...-. =|..++.||++|.+.+.+.
T Consensus 65 ~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 111 (152)
T 3bj6_A 65 QMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAI 111 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHH
Confidence 4777789999999999999988653 6778999999999888754
No 65
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=86.75 E-value=0.29 Score=35.13 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=37.3
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|..+++.|..+|||...- .-|..++.||++|.+.+.+.
T Consensus 56 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 102 (145)
T 3g3z_A 56 SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL 102 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHH
Confidence 477778999999999999998643 46889999999999988654
No 66
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=86.72 E-value=0.55 Score=33.16 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=48.8
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhH-HHHHH
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI-EFLRT 78 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGI-eYLR~ 78 (188)
...|..|...|.+.++-+ .|. -..++++.=.|-+.++.|...|+|...-.=++.||.||++++ ++++.
T Consensus 25 ~~~r~~IL~~L~~~~~~~--~el----a~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~ 93 (106)
T 1r1u_A 25 DYNRIRIMELLSVSEASV--GHI----SHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQ 93 (106)
T ss_dssp SHHHHHHHHHHHHCCBCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 456888998887332211 111 112357888899999999999999876666899999999998 45444
No 67
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=86.64 E-value=0.6 Score=33.36 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=37.7
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||...- .=|..+..||++|.+.+.+.
T Consensus 61 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (144)
T 3f3x_A 61 FVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEA 107 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHH
Confidence 577778999999999999998764 46889999999999988764
No 68
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=86.39 E-value=0.44 Score=33.62 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=34.0
Q ss_pred cCCHHHHHHhhcccccccccee-eeceeeEEeechhhHHHHHH
Q 029742 37 VPNLQVIKLMQSFKSREYVRET-FAWMHYYWYLTNDGIEFLRT 78 (188)
Q Consensus 37 VpNL~ViKamqSLkSrGyVkEq-FaWrhyYw~LTnEGIeYLR~ 78 (188)
++.=.|..+++.|..+|||... -.=|..|..||++|.+.+.+
T Consensus 40 ~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~ 82 (123)
T 1okr_A 40 WSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKT 82 (123)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHH
T ss_pred CcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHH
Confidence 5677899999999999999654 35667778999999877654
No 69
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=86.17 E-value=0.68 Score=34.09 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=37.7
Q ss_pred ccCCHHHHHHhhccccccccceeee-----ceeeEEeechhhHHHHHHhhCC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 82 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa-----WrhyYw~LTnEGIeYLR~yLhL 82 (188)
++..=.|..+++.|...|+|..... =+--||.||++|.+.|.+++..
T Consensus 39 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 90 (115)
T 4esb_A 39 FVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQS 90 (115)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 4666788999999999999986531 1456889999999999987654
No 70
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=86.06 E-value=0.2 Score=35.75 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=47.1
Q ss_pred HHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 8 r~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
...|...|.+.|-+ ..+|.. ..+.++.=.|.++++.|..+|||...-. -|..++.||++|.+.+.+.
T Consensus 42 ~~~iL~~l~~~~~~-~~~~la----~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 42 QYLALLLLWEHETL-TVKKMG----EQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp HHHHHHHHHHHSEE-EHHHHH----HTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred HHHHHHHHHHCCCC-CHHHHH----HHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 34566666665522 222322 1245778889999999999999987643 6889999999999887653
No 71
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=85.81 E-value=0.49 Score=34.78 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=38.2
Q ss_pred cccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHhh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~yL 80 (188)
+.++.=.|.++++.|..+|||...-. -|-.+.+||++|.+.+.+..
T Consensus 77 l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 77 GVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 35777889999999999999986643 67899999999999887643
No 72
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=85.75 E-value=0.3 Score=35.34 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=35.0
Q ss_pred cccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
+.++.=.|.++++.|..+|||...- .=|..++.||++|.+.+.+.
T Consensus 71 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 71 LYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred hCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 3578888999999999999998764 45788899999999887654
No 73
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=85.67 E-value=0.15 Score=47.48 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred cccCCHHHHHHhhcccccc-ccceeeeceeeEEeechhhHHHHHHhhCCCCCCc
Q 029742 35 IDVPNLQVIKLMQSFKSRE-YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIV 87 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrG-yVkEqFaWrhyYw~LTnEGIeYLR~yLhLP~eIV 87 (188)
++++--.|+.++.||.|+| +|+-.-- -.-.|.||+||.+|+.+ +||+..|
T Consensus 30 ~~~~~~~v~~~~~~L~~~~~~v~~~~~-~~~~~~Lt~eg~~~~~~--G~pE~~~ 80 (508)
T 3l4g_A 30 LGMEHQAVVGAVKSLQALGEVIEAELR-STKHWELTAEGEEIARE--GSHEARV 80 (508)
T ss_dssp ------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEECHHHHHHHHc--CCHHHHH
Confidence 3577788999999999998 8753222 34568999999999984 6776444
No 74
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.65 E-value=0.6 Score=31.34 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=48.8
Q ss_pred hhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeee--ceeeEEeechhhHHHHHHh
Q 029742 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA--WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 6 knr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFa--WrhyYw~LTnEGIeYLR~y 79 (188)
..+..|+..|.++|-+- -+|. -..++++.=.|-+.++.|..+|+|...-. -|..|.+||++|.+.+...
T Consensus 20 ~~~~~il~~l~~~~~~s-~~el----a~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMR-VSEI----ARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp HHHHHHHHHHHHHCCBC-HHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-HHHH----HHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 45677888887644211 1111 11235888899999999999999987553 6678899999999887654
No 75
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=85.36 E-value=0.66 Score=34.72 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=48.9
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCcc-ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHH
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRT 78 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel-~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~ 78 (188)
..+.+..|...|. +|-+-. .|.. ..+ .|..=.|.+.++.|...|+|...-. =|..+|.||++|.+.+..
T Consensus 33 ~~~w~l~IL~~L~-~g~~~~-~eLa----~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~ 105 (131)
T 1yyv_A 33 TSRWGVLILVALR-DGTHRF-SDLR----RXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDX 105 (131)
T ss_dssp HSHHHHHHHHHGG-GCCEEH-HHHH----HHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred cCCcHHHHHHHHH-cCCCCH-HHHH----HHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHH
Confidence 3455667888887 554321 2321 134 3777888999999999999987655 588999999999876654
No 76
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=85.22 E-value=0.59 Score=34.39 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=38.4
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
.++.=.|.++++.|..+|||..+- .-|-.+..||++|.+.+.+..
T Consensus 71 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 71 FIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp TSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 477778999999999999998765 568899999999999887643
No 77
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.73 E-value=0.46 Score=34.50 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=34.4
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
.++.=.|.++++.|..+|||..+- .=|..++.||++|.+.+.+..
T Consensus 66 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 113 (149)
T 4hbl_A 66 DLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVF 113 (149)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHH
Confidence 477788999999999999998764 368889999999999987643
No 78
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=84.63 E-value=0.33 Score=35.01 Aligned_cols=45 Identities=9% Similarity=0.267 Sum_probs=30.8
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
.++.=.|..+++.|..+|||..+- .-|..+..||++|.+.+.+..
T Consensus 68 ~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 68 GRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp -----CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH
Confidence 466667889999999999998664 467889999999999887643
No 79
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=84.50 E-value=0.37 Score=34.54 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=30.6
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||+..-. -|..+.+||++|.+.+.+.
T Consensus 62 ~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 108 (142)
T 3ech_A 62 CRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHA 108 (142)
T ss_dssp C---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHH
Confidence 4777789999999999999987544 5889999999999988764
No 80
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=83.98 E-value=0.53 Score=34.13 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=34.1
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHH
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~ 78 (188)
++|+.=.|.++++.|..+|||... +..+++||++|.+.+.+
T Consensus 32 l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 32 LAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGKR 72 (142)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHHH
Confidence 358888999999999999999765 34689999999877654
No 81
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=83.83 E-value=0.45 Score=34.38 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=37.2
Q ss_pred ccCCHHHHHHhhcccccccccee---eeceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEq---FaWrhyYw~LTnEGIeYLR~yL 80 (188)
.++.=.|..+++.|..+|||... -.=|-.+.+||++|.+.+.+..
T Consensus 64 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 64 NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 46777899999999999999863 3467888999999999887643
No 82
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=83.81 E-value=0.99 Score=33.95 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=36.8
Q ss_pred cccCCHHHHHHhhccccccccceeee----ceeeEEeechhhHHHHHHhhC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFa----WrhyYw~LTnEGIeYLR~yLh 81 (188)
+++..=.+.-+++.|...|+|..... =+--||.||++|.+.|.+++.
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~ 98 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEA 98 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 34566678899999999999986521 245689999999999998753
No 83
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=83.68 E-value=0.48 Score=34.25 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=33.6
Q ss_pred ccCCHHHHHHhhccccccccce-----eeeceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRE-----TFAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkE-----qFaWrhyYw~LTnEGIeYLR~y 79 (188)
.+..=.|.++++.|..+|||.- .-.=|..|..||++|.+.+.+.
T Consensus 62 ~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~ 110 (151)
T 3kp7_A 62 GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKER 110 (151)
T ss_dssp CSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHH
Confidence 4777889999999999999984 3557889999999999988754
No 84
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=83.41 E-value=0.46 Score=34.01 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=34.1
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~yL 80 (188)
.++.=.|.++++.|..+|||...- .-|..+..||++|.+.+.+..
T Consensus 65 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 477778999999999999998653 366788999999999887643
No 85
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=83.38 E-value=0.67 Score=32.83 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=46.8
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccc-cCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHH
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFL 76 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~-VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYL 76 (188)
..+.+..|...|. +|-+-. .|.. ..++ +..=.|...++.|...|+|...-. =|..+|.||++|.+.+
T Consensus 23 ~~~~~~~IL~~L~-~~~~~~-~eL~----~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 23 AGKWTLLIIFQIN-RRIIRY-GELK----RAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp TSSSHHHHHHHHT-TSCEEH-HHHH----HHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred cCccHHHHHHHHH-hCCcCH-HHHH----HHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence 4455667877787 453321 2321 1343 777889999999999999986543 5779999999997644
No 86
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=83.35 E-value=0.65 Score=35.68 Aligned_cols=48 Identities=6% Similarity=0.105 Sum_probs=38.4
Q ss_pred cccCCHHHHHHhhccccccccceeee------ceeeEEeechhhHHHHHHhhCC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLNL 82 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFa------WrhyYw~LTnEGIeYLR~yLhL 82 (188)
+++..=.+..+++.|...|+|+..-. =+.-||.||++|.+.|.+++.-
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~ 117 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQL 117 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 45677788999999999999986532 2467999999999999887653
No 87
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=83.31 E-value=0.77 Score=36.58 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=53.0
Q ss_pred chhhHHHHHHHhhhc--ceEEEeecCCCCCCCccc-cCCHHHHHHhhcccccccccee-eec-------eeeEEeechhh
Q 029742 4 PEKNRKEICKYLFQE--GVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRET-FAW-------MHYYWYLTNDG 72 (188)
Q Consensus 4 pKknr~aIYe~LFkE--GVmVaKKD~~~pkHpel~-VpNL~ViKamqSLkSrGyVkEq-FaW-------rhyYw~LTnEG 72 (188)
-..+|.+|.+.|... +.+.+. +.. ..+. |.-=-|-..|+.|+.-|+|++. +.| -+.||.||++|
T Consensus 27 ~~~tR~~IL~~Ll~~p~~~~ta~-eL~----~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~G 101 (151)
T 3u1d_A 27 LHETRLDVLHQILAQPDGVLSVE-ELL----YRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEG 101 (151)
T ss_dssp CCHHHHHHHHHHHHSTTSCBCHH-HHH----HHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHH
T ss_pred cchHHHHHHHHHHcCCCCCCCHH-HHH----HhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHH
Confidence 456899999999864 222222 111 1122 4555788999999999999854 566 25699999999
Q ss_pred HHHHHHhhCCCC
Q 029742 73 IEFLRTYLNLPS 84 (188)
Q Consensus 73 IeYLR~yLhLP~ 84 (188)
.+.|.+|=-|-.
T Consensus 102 r~~l~~y~~la~ 113 (151)
T 3u1d_A 102 IALLRAVSMYEE 113 (151)
T ss_dssp HHHHHHTTCSTH
T ss_pred HHHHHHhHHHhH
Confidence 999998655543
No 88
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=83.20 E-value=0.98 Score=30.38 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=38.2
Q ss_pred cccCCHHHHHHhhccccccccceeee------ceeeEEeechhhHHHHHHhhC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFa------WrhyYw~LTnEGIeYLR~yLh 81 (188)
++|+.=.|-++++.|..+|+|...-. .+..+|.||++.++.+++.+.
T Consensus 46 l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~ 98 (109)
T 2d1h_A 46 FKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLL 98 (109)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHH
Confidence 46888889999999999999987654 456789999998888877653
No 89
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=83.03 E-value=0.63 Score=33.48 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=33.4
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHh
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~y 79 (188)
++|+.=.|.++++.|..+|||...= ..|.||++|.+.+.+.
T Consensus 41 l~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 41 LKIAPSSVFEEVSHLEEKGLVKKKE----DGVWITNNGTRSINYL 81 (139)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEET----TEEEECHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHCCCEEecC----CeEEEChhHHHHHHHH
Confidence 3588889999999999999997543 4688999999876544
No 90
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=81.11 E-value=0.75 Score=33.19 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=32.2
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||...- .=|-.+..||++|.+.+.+.
T Consensus 65 ~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 111 (150)
T 3fm5_A 65 GLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDA 111 (150)
T ss_dssp TCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHH
Confidence 478888999999999999998644 35788899999999988764
No 91
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=80.46 E-value=1.4 Score=32.42 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=47.9
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhH-HHHHH
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI-EFLRT 78 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGI-eYLR~ 78 (188)
...|..|...|.+.+.-+ .|. -..++++.=.|-+.++.|...|+|...-.-|+.||+||++++ ++++.
T Consensus 45 ~~~rl~IL~~L~~~~~s~--~el----a~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~ 113 (122)
T 1r1t_A 45 DPNRLRLLSLLARSELCV--GDL----AQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQN 113 (122)
T ss_dssp CHHHHHHHHHHTTCCBCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 346778888876422111 011 112357888899999999999999877677889999999998 44444
No 92
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.28 E-value=0.99 Score=35.55 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=37.0
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHhhC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~yLh 81 (188)
.+..=.|..+++.|..+|||...-+ -|..|.+||++|.+.+.+...
T Consensus 73 ~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (207)
T 2fxa_A 73 VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 4677789999999999999987654 788999999999999887653
No 93
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=79.24 E-value=0.23 Score=34.44 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhH
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI 73 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGI 73 (188)
..+|..|.+.| +..+-+ .|. ...++|+.=.|-+.++.|...|+|...- . +|.||++|.
T Consensus 30 ~~~r~~Il~~L-~~~~~~--~eL----a~~l~is~~tv~~~L~~L~~~Glv~~~~--g--~y~l~~~g~ 87 (96)
T 1y0u_A 30 NPVRRKILRML-DKGRSE--EEI----MQTLSLSKKQLDYHLKVLEAGFCIERVG--E--RWVVTDAGK 87 (96)
T ss_dssp CHHHHHHHHHH-HTTCCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEET--T--EEEECTTTC
T ss_pred CHHHHHHHHHH-cCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEC--C--EEEECCCch
Confidence 45678888888 433211 121 1133688888999999999999998755 2 889999884
No 94
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=78.83 E-value=1.4 Score=35.84 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=40.5
Q ss_pred ccCCHHHHHHhhccccccccceeee----c-eeeEEeechhhHHHHHHhhCCCCC
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA----W-MHYYWYLTNDGIEFLRTYLNLPSE 85 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa----W-rhyYw~LTnEGIeYLR~yLhLP~e 85 (188)
++..=+|..+++.|...|+|...-. - .--||.||++|.+.|+++|.=|.+
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~~~ 122 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSDVN 122 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSCCC
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhcccC
Confidence 4666688999999999999986531 1 246899999999999999987755
No 95
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=78.61 E-value=1.4 Score=33.67 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=37.6
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHhh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~yL 80 (188)
.++.=.|..+++.|..+|||...-+ -|..+.+||++|.+.+.+..
T Consensus 68 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 68 GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4777889999999999999987654 57799999999998877544
No 96
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=77.25 E-value=1.8 Score=32.19 Aligned_cols=44 Identities=5% Similarity=0.126 Sum_probs=37.6
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
.|..=.|..+++.|..+|||.-.-+ =|-.+.+||++|.+.+.+.
T Consensus 57 ~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~ 103 (151)
T 4aik_A 57 GIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV 103 (151)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH
Confidence 4888889999999999999986554 6889999999999887653
No 97
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=76.83 E-value=2.3 Score=32.46 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=39.3
Q ss_pred cCCHHHHHHhhccccccccceeeece-e-eEEeechhhHHHHHHhhCCCCCC
Q 029742 37 VPNLQVIKLMQSFKSREYVRETFAWM-H-YYWYLTNDGIEFLRTYLNLPSEI 86 (188)
Q Consensus 37 VpNL~ViKamqSLkSrGyVkEqFaWr-h-yYw~LTnEGIeYLR~yLhLP~eI 86 (188)
.+.=+....++.|...||+++...-. | -+..||++|-++|+.....|+++
T Consensus 65 ~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~~~~l 116 (134)
T 3aaf_A 65 QTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTESQSL 116 (134)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTSCCCC
T ss_pred CCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccCCCce
Confidence 66778889999999999999877321 0 25899999999999987755444
No 98
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=75.55 E-value=2.1 Score=31.57 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=36.6
Q ss_pred ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYLR~y 79 (188)
.+..=.|..++..|..+|||...-+ =|-.+-+||++|.+.+.+.
T Consensus 62 ~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 62 MVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 4778889999999999999987766 4789999999999988753
No 99
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=74.81 E-value=0.7 Score=34.82 Aligned_cols=44 Identities=7% Similarity=0.028 Sum_probs=34.0
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.++.=.|.++++.|..+|||...- .-|..+..||++|.+.+.+.
T Consensus 97 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 143 (181)
T 2fbk_A 97 AISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHL 143 (181)
T ss_dssp SCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 467777889999999999998753 46778899999999988764
No 100
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=73.80 E-value=1.3 Score=35.52 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=37.9
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHH--------------HHHhhCCCCC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEF--------------LRTYLNLPSE 85 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeY--------------LR~yLhLP~e 85 (188)
++|..=.|..+++.|..+|||.-. ++.+++||++|.+. |.+.|++++|
T Consensus 34 l~vs~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~~~~~~~~~~e~~l~~~lgl~~e 95 (226)
T 2qq9_A 34 LEQSGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDIN 95 (226)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 457888899999999999999775 34679999999763 4445688865
No 101
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=73.18 E-value=1.6 Score=34.86 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=39.6
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHH--------------HHHHhhCCCCCCc
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIE--------------FLRTYLNLPSEIV 87 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIe--------------YLR~yLhLP~eIV 87 (188)
++|..=.|.++++.|..+|||.-.= +..++||++|.+ ||.+.|+++++.+
T Consensus 30 l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~ 93 (214)
T 3hrs_A 30 MQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEI 93 (214)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4688889999999999999997653 357899999976 3445678887644
No 102
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=72.57 E-value=0.77 Score=35.86 Aligned_cols=47 Identities=4% Similarity=0.085 Sum_probs=37.5
Q ss_pred cccCCHHHHHHhhccccccccceee------eceeeEEeechhhHHHHHHhhC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETF------AWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqF------aWrhyYw~LTnEGIeYLR~yLh 81 (188)
+++..=.+..+|+.|...|+|...- .=+--||.||++|.+.|.+++.
T Consensus 74 ~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 126 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 126 (148)
T ss_dssp EECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHH
Confidence 4577778999999999999998653 1346799999999988777654
No 103
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=70.23 E-value=3.7 Score=28.91 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=48.3
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhH-HHHHHhh
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI-EFLRTYL 80 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGI-eYLR~yL 80 (188)
...+..|...|.+++.-+ .|. -..++++.=.|-+.++.|...|+|...-.-|..||++|.+.+ +.++..+
T Consensus 31 ~~~~~~il~~L~~~~~s~--~el----a~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~ 101 (119)
T 2lkp_A 31 TPSRLMILTQLRNGPLPV--TDL----AEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAI 101 (119)
T ss_dssp CHHHHHHHHHHHHCCCCH--HHH----HHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHH
Confidence 345777888877521111 111 113468888999999999999999877788999999996654 6666543
No 104
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=68.71 E-value=2.7 Score=34.89 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=47.2
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccce-eeece-----eeEEeechhhHHH
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRE-TFAWM-----HYYWYLTNDGIEF 75 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkE-qFaWr-----hyYw~LTnEGIeY 75 (188)
-..+|..|...|.+ |-+-+ .+ + -..++++.=.|.+.++.|...|+|.. .-.-+ ..||.||++|+.-
T Consensus 10 ~~~~R~~IL~~L~~-g~~s~-~E--L--a~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~ 81 (232)
T 2qlz_A 10 GNKVRRDLLSHLTC-MECYF-SL--L--SSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKSYV 81 (232)
T ss_dssp TSHHHHHHHHHHTT-TTTCS-SS--S--CTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEEEE
T ss_pred CCHHHHHHHHHHHh-CCCCH-HH--H--HHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchhhH
Confidence 35689999999985 42211 11 1 12346787889999999999999998 44446 7899999999754
No 105
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=66.02 E-value=2.8 Score=31.53 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=43.8
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeee--ceeeEEeechhhHH
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA--WMHYYWYLTNDGIE 74 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFa--WrhyYw~LTnEGIe 74 (188)
..+.+..|...|+ +|.+- -+|.. ..++|+.=.|.+.++.|...|+|...-. =+..+|.||++|.+
T Consensus 22 ~~~w~l~IL~~L~-~g~~~-~~eLa----~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~ 88 (146)
T 2f2e_A 22 GDGWSMLIVRDAF-EGLTR-FGEFQ----KSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRA 88 (146)
T ss_dssp CSSSHHHHHHHHH-TTCCS-HHHHH----HHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHT
T ss_pred CCchHHHHHHHHH-hCCCC-HHHHH----HHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHH
Confidence 3455667877886 45321 11211 1346888899999999999999986542 11578899999964
No 106
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=65.86 E-value=2.8 Score=34.76 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=36.3
Q ss_pred cccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhhCCC
Q 029742 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLP 83 (188)
Q Consensus 35 l~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP 83 (188)
++++.=.|-+.++.|..+|||+.. =|...|.||++|.+.+.....+|
T Consensus 176 lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~ 222 (244)
T 2wte_A 176 LDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVI 222 (244)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC---
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhccc
Confidence 357888899999999999999875 24557889999999887755543
No 107
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=62.42 E-value=2.9 Score=33.41 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=32.9
Q ss_pred ccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHH
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLR 77 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR 77 (188)
+|..=.|..+++.|..+|||...-. -+++||++|.+.+.
T Consensus 35 ~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 35 DQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAI 73 (230)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHH
Confidence 5788889999999999999987654 37899999987754
No 108
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=61.23 E-value=4.2 Score=29.80 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.3
Q ss_pred ccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~y 79 (188)
+|..=.|-++++.|..+|+|...-+ ..++||++|.+.+.+.
T Consensus 65 ~vs~~tvs~~l~~Le~~Glv~r~~~---~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 65 GVSQPTVAKMLKRLATMGLIEMIPW---RGVFLTAEGEKLAQES 105 (155)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEETT---TEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecC---CceEEChhHHHHHHHH
Confidence 5888889999999999999976533 4578999999876653
No 109
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=60.80 E-value=1.8 Score=29.21 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=42.4
Q ss_pred HHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccce--eeeceeeEEeechhhH
Q 029742 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRE--TFAWMHYYWYLTNDGI 73 (188)
Q Consensus 8 r~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkE--qFaWrhyYw~LTnEGI 73 (188)
|..|.++|.++|-+- .+|.. ..++|+.=.|-+.++.|.+.|+|.. .-..+..||.++++.+
T Consensus 2 r~~Il~~L~~~~~~s-~~eLa----~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~~~ 64 (81)
T 2htj_A 2 KNEILEFLNRHNGGK-TAEIA----EALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGEKQ 64 (81)
T ss_dssp HHHHHHHHHHSCCCC-HHHHH----HHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSCSS
T ss_pred HHHHHHHHHHcCCCC-HHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChhhh
Confidence 567888887765311 11111 1235888889999999999999983 3456778999987643
No 110
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=58.67 E-value=7.5 Score=30.78 Aligned_cols=74 Identities=11% Similarity=0.143 Sum_probs=50.3
Q ss_pred hhHHHHHHHhhhcceEEEeecCCCCC-CCccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHh
Q 029742 6 KNRKEICKYLFQEGVCYAKKDYNLAK-HPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 6 knr~aIYe~LFkEGVmVaKKD~~~pk-Hpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~y 79 (188)
.+...+...|-+.|-+......+... -..+.+..=.|-+.++.|...|++.-+-.-|.....||++|.+++...
T Consensus 7 ~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 7 DQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 34556666676666543322222110 012357778899999999999998776556889999999999888654
No 111
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=58.12 E-value=1.8 Score=34.91 Aligned_cols=67 Identities=10% Similarity=0.178 Sum_probs=48.7
Q ss_pred chhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeee-----ceeeEEeechhhHHHH
Q 029742 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFL 76 (188)
Q Consensus 4 pKknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFa-----WrhyYw~LTnEGIeYL 76 (188)
...+|.+|...|- +|=+-+ .|.. ..++++.=.|...++.|...|+|+..-. -+..||.||++|+.-+
T Consensus 13 ~~~~rl~IL~~L~-~~~~s~-~eLa----~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~~~l 84 (202)
T 2p4w_A 13 GNETRRRILFLLT-KRPYFV-SELS----RELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLEI 84 (202)
T ss_dssp HSHHHHHHHHHHH-HSCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEEE
T ss_pred CCHHHHHHHHHHH-hCCCCH-HHHH----HHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHHHHH
Confidence 3567889999884 443321 1211 1345788889999999999999988665 7889999999998543
No 112
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=57.15 E-value=4.4 Score=29.98 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=30.5
Q ss_pred ccCCHHHHHHhhccccccccceeee--ceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFA--WMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFa--WrhyYw~LTnEGIeYLR~y 79 (188)
.+..=.|...++.|..+|||+..-. =|-.+-+||++|.+.+.+-
T Consensus 63 ~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 63 GVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 3677788999999999999965432 3667889999999988763
No 113
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=55.06 E-value=6.2 Score=29.94 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=43.4
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCcc-ccCCHHHHHHhhccccccccceeee---ceeeEEeechhhHHHH
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFL 76 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel-~VpNL~ViKamqSLkSrGyVkEqFa---WrhyYw~LTnEGIeYL 76 (188)
.+-+..|...|+ +|.+=. .|. ...+ +|..=.+.+.++.|...|+|..+-. =+..+|.||++|.+.+
T Consensus 25 ~kW~l~IL~~L~-~g~~rf-~eL----~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 25 GKWKGILFYHMI-DGKKRF-NEF----RRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSSHHHHHHHHT-TSCBCH-HHH----HHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred CcCHHHHHHHHh-cCCcCH-HHH----HHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 445566777776 443211 111 1123 4677789999999999999986642 2578999999996543
No 114
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=55.02 E-value=7.7 Score=28.38 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=39.1
Q ss_pred hHHHHHHHhhh-cceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEE--eechhhH
Q 029742 7 NRKEICKYLFQ-EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYW--YLTNDGI 73 (188)
Q Consensus 7 nr~aIYe~LFk-EGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw--~LTnEGI 73 (188)
....|...|.+ +|=+- .+|..--...+-++..=.|..+++.|..+|||+..=.-|-+.+ .||.+|.
T Consensus 10 ~e~~vL~~L~~~~~~~t-~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQT-VRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHHHHTCSSCEE-HHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 34578888886 34332 2343211011112566789999999999999986655554444 4788885
No 115
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=51.03 E-value=6.4 Score=32.56 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=34.8
Q ss_pred ccccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHHhhC
Q 029742 34 EIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (188)
Q Consensus 34 el~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~yLh 81 (188)
.++|..=.|-.+++-|+++|||.-.= -+-+||++|.+++.+-..
T Consensus 39 ~LgvS~~SV~~~lkkL~e~GLV~~~~----~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 39 RLELGEGSVRTLLRKLSHLDIIRSKQ----RGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHCCCEEEeC----CCeEECHHHHHHHHHHHH
Confidence 34688889999999999999996543 478999999988776544
No 116
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=47.10 E-value=19 Score=27.82 Aligned_cols=45 Identities=2% Similarity=0.112 Sum_probs=37.3
Q ss_pred ccccCCHHHHHHhhccccccccceeeecee---------eEEeechhhHH--HHHHhh
Q 029742 34 EIDVPNLQVIKLMQSFKSREYVRETFAWMH---------YYWYLTNDGIE--FLRTYL 80 (188)
Q Consensus 34 el~VpNL~ViKamqSLkSrGyVkEqFaWrh---------yYw~LTnEGIe--YLR~yL 80 (188)
.++++.=.|..+|..|...|+|+.. |+- =||.||++|-+ |+.++.
T Consensus 49 ~~~is~gtlYp~L~rLe~~Gll~~~--~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~ 104 (122)
T 1bm9_A 49 GFKPNHTEVYRSLHELLDDGILKQI--KVKKEGAKLQEVVLYQFKDYEAAKLYKKQLK 104 (122)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEE--EEECTTSTTCEEEEEEESCHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHCCCeEEE--EeecCCCCCCceeEEEEChhhhhHHHHHHHH
Confidence 3457778899999999999999764 563 89999999999 988754
No 117
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=46.95 E-value=4.1 Score=27.16 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=37.6
Q ss_pred hHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeec
Q 029742 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLT 69 (188)
Q Consensus 7 nr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LT 69 (188)
.+.+|.+.|-+++--+.-.|.. ..++|+-=.|-+.++.|+..|||... +--||.|+
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA----~~lglsr~tv~~~l~~L~~~G~I~~~---~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLV----KKCQVPKKTLNQVLYRLKKEDRVSSP---SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHH----HHHCSCHHHHHHHHHHHHHTTSEEEE---ETTEEEEC
T ss_pred HHHHHHHHHHHcCCCcCHHHHH----HHHCcCHHHHHHHHHHHHHCCcEecC---CCceEeeC
Confidence 4668999887654222222321 13468999999999999999998542 23577765
No 118
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=44.03 E-value=3.9 Score=28.65 Aligned_cols=44 Identities=18% Similarity=0.434 Sum_probs=32.0
Q ss_pred HHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccc
Q 029742 9 KEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVR 56 (188)
Q Consensus 9 ~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVk 56 (188)
..|++++-..|=++--.++.. ...|+.=.|++++++|.++|+++
T Consensus 13 ~~lL~yIr~sGGildI~~~a~----kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSK----VYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHH----HHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCEEeHHHHHH----HhCCCHHHHHHHHHHHHHCCCee
Confidence 468888888644442223321 35689999999999999999976
No 119
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=43.73 E-value=11 Score=31.03 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=46.9
Q ss_pred hhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechh
Q 029742 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTND 71 (188)
Q Consensus 6 knr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnE 71 (188)
+-+++|.|+|- +|.+-.-+=.+ .+++.-=++--++..|.--|.|+|.=--+--||+|.+.
T Consensus 11 erk~~ILE~Lk-~G~~~t~~Iak-----~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s 70 (165)
T 2vxz_A 11 VRLRDILALLA-DGCKTTSLIQQ-----RLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD 70 (165)
T ss_dssp HHHHHHHHHHT-TCCEEHHHHHH-----HHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH
T ss_pred HHHHHHHHHHH-hCCccHHHHHH-----HhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH
Confidence 45789999998 98875432111 34577778888899999999999999999999999755
No 120
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=31.69 E-value=27 Score=24.20 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=27.2
Q ss_pred ccCCHHHHHHhhcccccccccee---eeceeeEEeec
Q 029742 36 DVPNLQVIKLMQSFKSREYVRET---FAWMHYYWYLT 69 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEq---FaWrhyYw~LT 69 (188)
+++.=.|..+++.|..+|||... -.-|.+|-.+|
T Consensus 52 ~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~ 88 (152)
T 1ku9_A 52 KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVD 88 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecc
Confidence 57888999999999999999875 34667776664
No 121
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=31.31 E-value=15 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.337 Sum_probs=34.2
Q ss_pred hHHHHHHHhhh---cceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceee
Q 029742 7 NRKEICKYLFQ---EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF 59 (188)
Q Consensus 7 nr~aIYe~LFk---EGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqF 59 (188)
....||..|.. +|+ ..+|.. ..+++++=.|.+++++|.++|||+.+=
T Consensus 21 ~q~~Vl~~I~~~g~~gi--~qkeLa----~~~~l~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGI--WSRDVR----YKSNLPLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp SHHHHHHHHHHHCTTCE--EHHHHH----HHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCc--CHHHHH----HHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 45689999995 354 345543 134578888999999999999999543
No 122
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=31.20 E-value=36 Score=29.00 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=35.0
Q ss_pred ccCCHHHHHHhhccccccccceeeeceeeEEeechhhHHHHHH
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnEGIeYLR~ 78 (188)
.|..=.|--++.-|+++|.+.-.=.=|--||.||+.|.+-|++
T Consensus 56 Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~~ 98 (266)
T 3l09_A 56 GLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTRA 98 (266)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHHH
Confidence 4566667788999999999987755566699999999999864
No 123
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=30.99 E-value=10 Score=32.14 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccc-eeeeceeeEEeechhhHHHH
Q 029742 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVR-ETFAWMHYYWYLTNDGIEFL 76 (188)
Q Consensus 6 knr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVk-EqFaWrhyYw~LTnEGIeYL 76 (188)
+.+..|.++|..++-+- .+|.- ..++|..-.|-+.++.|+.+|+|+ +. +.-+||++|.+.+
T Consensus 20 ~r~~~iL~~l~~~~~~t-~~eLa----~~l~vs~~Tv~r~l~~Le~~Glv~~~~-----~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 20 QERFQILRNIYWMQPIG-RRSLS----ETMGITERVLRTETDVLKQLNLIEPSK-----SGMTLTERGLEVY 81 (345)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCC-HHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEe-----cceEEcHHHHHHH
Confidence 34456666766554321 22321 245688889999999999999997 43 3488999997544
No 124
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=29.24 E-value=48 Score=22.93 Aligned_cols=64 Identities=6% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeecee-eEEeechhh
Q 029742 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMH-YYWYLTNDG 72 (188)
Q Consensus 8 r~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrh-yYw~LTnEG 72 (188)
...|...|.+.|=+ ..+|..--.+.+-++..=.|..+++.|..+|||.-.=.=|- .|..+|.++
T Consensus 12 q~~vL~~L~~~~~~-t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~~~~ 76 (126)
T 1sd4_A 12 EWDVMNIIWDKKSV-SANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKED 76 (126)
T ss_dssp HHHHHHHHHHSSSE-EHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEecCHH
Confidence 34677777765532 22333210000011456679999999999999986555444 455455544
No 125
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=28.70 E-value=33 Score=22.55 Aligned_cols=61 Identities=3% Similarity=0.013 Sum_probs=34.9
Q ss_pred hhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEe
Q 029742 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWY 67 (188)
Q Consensus 6 knr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~ 67 (188)
..+..|.+.|.++|-+-+ +|..--.+.+-++..=.|...++.|..+|+|...=.=|.++|.
T Consensus 9 ~~e~~vL~~L~~~~~~t~-~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~ 69 (82)
T 1p6r_A 9 DAELEVMKVIWKHSSINT-NEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYT 69 (82)
T ss_dssp HHHHHHHHHHHTSSSEEH-HHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEE
Confidence 345678888886553322 2322100000014556799999999999999765433444443
No 126
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.71 E-value=14 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.377 Sum_probs=33.1
Q ss_pred hHHHHHHHhhh---cceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeee
Q 029742 7 NRKEICKYLFQ---EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60 (188)
Q Consensus 7 nr~aIYe~LFk---EGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFa 60 (188)
.-..||..+.+ +|+- .+|... .++++.=.|.+++++|.++||||++=+
T Consensus 38 ~E~lVy~~I~~aGn~GIw--~kdL~~----~tnL~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIW--SRDVRY----KSNLPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp HHHHHHHHHHHHTTSCEE--HHHHHH----HHTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHhCCCCCC--HHHHHH----HhCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 34578888876 3443 355431 334666779999999999999998643
No 127
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=25.41 E-value=11 Score=29.40 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=37.7
Q ss_pred CccchhhHHHHHHHhhhcceEEEeecCCCCCCCcc----ccCCHHHHHHhhccccccccceeee
Q 029742 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI----DVPNLQVIKLMQSFKSREYVRETFA 60 (188)
Q Consensus 1 MlipKknr~aIYe~LFkEGVmVaKKD~~~pkHpel----~VpNL~ViKamqSLkSrGyVkEqFa 60 (188)
|-|+++.+.+|--.++ |....+-....-.+| +||--+|-|+|+.|+..|+|..+=+
T Consensus 20 M~lS~~~~yAlr~L~~----LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG 79 (159)
T 3lwf_A 20 MKITTKGRYGLTITLE----LAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 79 (159)
T ss_dssp SCCCHHHHHHHHHHHH----HHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS
T ss_pred eeCchHHHHHHHHHHH----HHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 7788888888876654 221111111112233 5899999999999999999987643
No 128
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=23.89 E-value=24 Score=30.32 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=44.0
Q ss_pred HHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechh
Q 029742 9 KEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTND 71 (188)
Q Consensus 9 ~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnE 71 (188)
.++|..|.+.|-+-+. +. ...++||-=.|-.+|++|..+|+|..+-++...|.....+
T Consensus 21 a~vY~~Ll~~g~~t~~-ei----a~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~ 78 (342)
T 3qph_A 21 ILTYWTLLVYGPSTAK-EI----STKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYSPR 78 (342)
T ss_dssp TSCSHHHHHHHHHHHS-CC----SSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECCHH
T ss_pred HHHHHHHHHcCCCCHH-HH----HHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcCHH
Confidence 3577788877765442 22 2356789999999999999999999998888777766554
No 129
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.61 E-value=18 Score=26.11 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=42.3
Q ss_pred hhhHHHHHHHhhhcceEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeechh
Q 029742 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTND 71 (188)
Q Consensus 5 Kknr~aIYe~LFkEGVmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTnE 71 (188)
...+.+|-++|.++| +-+ ++.- .+|+|+-=.|-+.+.+|...|+|..+ +=.-==|+||++
T Consensus 16 ~~~~~~IL~lL~~~g-~sa-~eLA----k~LgiSk~aVr~~L~~Le~eG~I~~~-~~~PP~W~~~~~ 75 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG-ATA-AQLT----RQLNMEKREVNKALYDLQRSAMVYSS-DDIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHHSSST-EEH-HHHH----HHSSSCHHHHHHHHHHHHHHTSSEEC-SSSSCEEESCC-
T ss_pred HHHHHHHHHHHHHcC-CCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEeC-CCCCCcceeccC
Confidence 467889999999999 322 2321 14678888999999999999999775 333345666553
No 130
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=23.23 E-value=50 Score=27.07 Aligned_cols=44 Identities=7% Similarity=0.079 Sum_probs=37.8
Q ss_pred ccCCHHHHHHhhccccccccceee---eceeeEEeechhhHHHHHHh
Q 029742 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (188)
Q Consensus 36 ~VpNL~ViKamqSLkSrGyVkEqF---aWrhyYw~LTnEGIeYLR~y 79 (188)
.+..=.|..+++.|..+|||.-.- -=|-.+=+||++|.+.+.+-
T Consensus 185 ~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 185 HHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp SSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 477888999999999999998765 46889999999999988753
No 131
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.03 E-value=15 Score=25.80 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=41.5
Q ss_pred cchhhHHHHHHHhhhcc---eEEEeecCCCCCCCccccCCHHHHHHhhccccccccceeeeceeeEEeech
Q 029742 3 IPEKNRKEICKYLFQEG---VCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTN 70 (188)
Q Consensus 3 ipKknr~aIYe~LFkEG---VmVaKKD~~~pkHpel~VpNL~ViKamqSLkSrGyVkEqFaWrhyYw~LTn 70 (188)
+..+...+|.+.|.++| -+-+. +.- ..|+|+-=.|-+.+.+|+..|+|+-+= =+--||.++.
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~~-eLA----~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~ 71 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTAH-DLS----GKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCHH-HHH----HHHTCCHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC-
T ss_pred cchHHHHHHHHHHHHcCCCCCcCHH-HHH----HHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeC
Confidence 34455677888888766 22211 111 134688889999999999999997653 3557888765
Done!