Query 029743
Match_columns 188
No_of_seqs 311 out of 1064
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 02:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1E-33 2.2E-38 198.9 10.6 157 1-160 223-382 (459)
2 KOG0271 Notchless-like WD40 re 100.0 6E-33 1.3E-37 193.4 13.7 153 1-156 121-279 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-33 3.8E-38 197.7 10.8 159 1-162 267-427 (459)
4 KOG0263 Transcription initiati 100.0 1.7E-32 3.6E-37 205.1 15.1 155 1-158 457-612 (707)
5 KOG0263 Transcription initiati 100.0 3.4E-32 7.4E-37 203.4 14.4 155 1-158 499-654 (707)
6 KOG0279 G protein beta subunit 100.0 3.4E-31 7.3E-36 177.7 16.2 158 1-162 69-231 (315)
7 KOG0271 Notchless-like WD40 re 100.0 9E-32 1.9E-36 187.6 12.8 185 1-187 163-479 (480)
8 KOG0266 WD40 repeat-containing 100.0 1.3E-29 2.8E-34 190.3 18.9 157 1-159 209-370 (456)
9 KOG0266 WD40 repeat-containing 100.0 8.4E-30 1.8E-34 191.3 17.3 155 1-157 165-322 (456)
10 KOG0315 G-protein beta subunit 100.0 1.1E-28 2.4E-33 163.6 15.3 155 1-158 89-293 (311)
11 KOG0285 Pleiotropic regulator 100.0 1.1E-28 2.4E-33 171.0 14.9 154 1-157 157-311 (460)
12 KOG0286 G-protein beta subunit 100.0 2E-28 4.4E-33 165.5 15.5 159 1-163 103-269 (343)
13 KOG0275 Conserved WD40 repeat- 100.0 1.3E-29 2.9E-34 174.1 8.6 162 2-165 220-390 (508)
14 KOG0295 WD40 repeat-containing 100.0 5.7E-28 1.2E-32 167.4 16.4 162 1-165 199-376 (406)
15 KOG0645 WD40 repeat protein [G 100.0 1.2E-27 2.7E-32 160.1 17.4 151 1-153 67-225 (312)
16 KOG0279 G protein beta subunit 100.0 8.2E-28 1.8E-32 161.5 15.8 160 1-165 111-274 (315)
17 KOG0291 WD40-repeat-containing 100.0 9.3E-28 2E-32 179.6 17.4 152 1-155 356-510 (893)
18 KOG0273 Beta-transducin family 100.0 7.5E-28 1.6E-32 171.7 15.8 159 1-162 241-491 (524)
19 KOG0284 Polyadenylation factor 100.0 4.1E-29 8.9E-34 175.3 9.3 157 1-161 144-302 (464)
20 PTZ00421 coronin; Provisional 100.0 3.6E-27 7.8E-32 177.3 19.9 154 1-156 81-248 (493)
21 KOG0286 G-protein beta subunit 100.0 4E-27 8.6E-32 159.3 14.4 149 1-151 192-343 (343)
22 KOG0319 WD40-repeat-containing 100.0 5.6E-27 1.2E-31 174.9 15.1 152 1-155 469-621 (775)
23 KOG0284 Polyadenylation factor 99.9 2.2E-27 4.7E-32 166.8 11.7 156 1-159 186-343 (464)
24 KOG0315 G-protein beta subunit 99.9 2.9E-26 6.2E-31 152.2 15.2 149 7-159 10-160 (311)
25 KOG0645 WD40 repeat protein [G 99.9 1.1E-25 2.3E-30 150.9 16.4 151 1-153 20-180 (312)
26 KOG0276 Vesicle coat complex C 99.9 3.6E-26 7.8E-31 168.3 14.3 158 1-161 103-265 (794)
27 KOG0292 Vesicle coat complex C 99.9 3.1E-26 6.7E-31 174.3 13.7 157 1-160 15-172 (1202)
28 KOG0282 mRNA splicing factor [ 99.9 1.5E-26 3.3E-31 165.3 10.0 154 2-159 221-378 (503)
29 PTZ00420 coronin; Provisional 99.9 1E-24 2.2E-29 165.3 20.1 151 1-155 80-250 (568)
30 KOG0273 Beta-transducin family 99.9 3.4E-25 7.5E-30 158.2 15.6 149 1-153 365-523 (524)
31 KOG0295 WD40 repeat-containing 99.9 3.1E-25 6.6E-30 154.0 14.9 148 2-152 242-405 (406)
32 KOG0265 U5 snRNP-specific prot 99.9 2.3E-25 5E-30 151.2 14.0 156 1-160 53-211 (338)
33 PTZ00421 coronin; Provisional 99.9 1.3E-24 2.9E-29 163.5 19.6 153 3-157 28-202 (493)
34 KOG0283 WD40 repeat-containing 99.9 1.2E-25 2.5E-30 169.8 12.8 150 1-156 273-484 (712)
35 KOG0296 Angio-associated migra 99.9 9.3E-25 2E-29 151.6 16.1 159 1-162 70-229 (399)
36 KOG0281 Beta-TrCP (transducin 99.9 9.8E-26 2.1E-30 156.3 10.4 149 3-157 243-432 (499)
37 KOG0319 WD40-repeat-containing 99.9 3.3E-25 7.1E-30 165.5 13.3 153 7-162 424-586 (775)
38 KOG0277 Peroxisomal targeting 99.9 1.1E-24 2.3E-29 145.1 13.4 153 1-156 66-224 (311)
39 KOG0276 Vesicle coat complex C 99.9 7.5E-25 1.6E-29 161.5 13.8 157 3-161 63-223 (794)
40 KOG0306 WD40-repeat-containing 99.9 6.1E-25 1.3E-29 164.6 12.6 151 1-154 514-665 (888)
41 KOG0265 U5 snRNP-specific prot 99.9 2E-24 4.3E-29 146.7 13.9 154 1-158 96-251 (338)
42 cd00200 WD40 WD40 domain, foun 99.9 2.5E-23 5.4E-28 146.7 19.4 155 1-158 15-170 (289)
43 KOG0316 Conserved WD40 repeat- 99.9 3E-24 6.5E-29 141.7 13.4 152 1-157 23-177 (307)
44 PTZ00420 coronin; Provisional 99.9 2E-23 4.3E-28 158.4 19.3 143 13-158 50-202 (568)
45 KOG0293 WD40 repeat-containing 99.9 5.9E-25 1.3E-29 155.1 10.1 153 1-155 275-515 (519)
46 KOG0285 Pleiotropic regulator 99.9 1.7E-24 3.6E-29 150.4 12.2 156 1-160 199-355 (460)
47 KOG0269 WD40 repeat-containing 99.9 9E-25 1.9E-29 164.0 11.7 149 6-157 99-254 (839)
48 KOG0289 mRNA splicing factor [ 99.9 6.7E-24 1.5E-28 150.4 15.2 162 2-165 268-431 (506)
49 KOG0277 Peroxisomal targeting 99.9 3.4E-24 7.3E-29 142.8 12.9 151 3-156 112-268 (311)
50 cd00200 WD40 WD40 domain, foun 99.9 3.5E-23 7.6E-28 145.9 18.7 157 1-160 57-214 (289)
51 KOG1407 WD40 repeat protein [F 99.9 3.4E-24 7.4E-29 143.2 11.7 160 1-162 26-270 (313)
52 KOG0318 WD40 repeat stress pro 99.9 3.6E-23 7.7E-28 149.8 17.6 155 1-160 196-357 (603)
53 PLN00181 protein SPA1-RELATED; 99.9 5.6E-23 1.2E-27 164.2 20.1 149 2-155 539-692 (793)
54 KOG0318 WD40 repeat stress pro 99.9 1.9E-23 4.1E-28 151.3 15.3 158 2-161 66-273 (603)
55 KOG0292 Vesicle coat complex C 99.9 1.2E-23 2.6E-28 160.4 14.5 160 1-163 57-290 (1202)
56 KOG0264 Nucleosome remodeling 99.9 2.6E-23 5.6E-28 147.7 15.1 158 1-160 183-354 (422)
57 KOG0269 WD40 repeat-containing 99.9 4.5E-24 9.8E-29 160.3 11.6 154 2-156 140-299 (839)
58 KOG0296 Angio-associated migra 99.9 4.8E-23 1E-27 143.2 15.8 150 1-153 154-398 (399)
59 KOG0640 mRNA cleavage stimulat 99.9 1.7E-23 3.7E-28 143.3 13.4 154 2-158 119-296 (430)
60 KOG0305 Anaphase promoting com 99.9 1.5E-23 3.3E-28 154.2 13.3 156 1-160 223-383 (484)
61 PLN00181 protein SPA1-RELATED; 99.9 1.8E-22 3.8E-27 161.4 20.1 151 1-155 581-740 (793)
62 KOG0267 Microtubule severing p 99.9 6.8E-25 1.5E-29 163.7 5.8 154 1-157 76-230 (825)
63 KOG0310 Conserved WD40 repeat- 99.9 9.2E-23 2E-27 146.2 16.1 152 2-157 117-272 (487)
64 KOG0973 Histone transcription 99.9 2.6E-23 5.6E-28 160.9 14.0 158 1-160 19-208 (942)
65 KOG0293 WD40 repeat-containing 99.9 3.5E-23 7.5E-28 146.2 13.3 159 1-161 230-392 (519)
66 KOG0274 Cdc4 and related F-box 99.9 1.2E-22 2.6E-27 153.6 16.8 152 4-163 258-411 (537)
67 KOG0310 Conserved WD40 repeat- 99.9 4.3E-23 9.4E-28 147.9 13.5 151 2-157 75-229 (487)
68 KOG0278 Serine/threonine kinas 99.9 3E-22 6.5E-27 133.5 16.3 151 3-159 151-303 (334)
69 KOG0302 Ribosome Assembly prot 99.9 3.4E-23 7.3E-28 144.7 12.2 153 1-155 217-380 (440)
70 KOG0264 Nucleosome remodeling 99.9 1.6E-22 3.4E-27 143.8 15.6 153 1-155 233-406 (422)
71 KOG0281 Beta-TrCP (transducin 99.9 1.2E-23 2.6E-28 146.0 9.5 149 6-162 206-397 (499)
72 KOG0640 mRNA cleavage stimulat 99.9 2.9E-23 6.2E-28 142.2 11.2 156 1-158 178-340 (430)
73 KOG0646 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 144.4 14.1 159 2-161 88-315 (476)
74 KOG0643 Translation initiation 99.9 3.8E-22 8.3E-27 133.9 14.8 158 1-161 16-228 (327)
75 KOG0316 Conserved WD40 repeat- 99.9 2.7E-22 5.8E-27 132.6 13.8 153 2-159 66-219 (307)
76 KOG0313 Microtubule binding pr 99.9 2.7E-22 5.8E-27 140.2 13.9 150 2-156 200-379 (423)
77 KOG0291 WD40-repeat-containing 99.9 1.1E-21 2.3E-26 147.6 17.8 161 2-165 272-434 (893)
78 KOG0308 Conserved WD40 repeat- 99.9 1.4E-22 3.1E-27 149.9 13.0 157 3-161 81-251 (735)
79 KOG0647 mRNA export protein (c 99.9 6.2E-22 1.3E-26 134.8 15.0 150 1-157 33-188 (347)
80 KOG0282 mRNA splicing factor [ 99.9 8.6E-23 1.9E-27 146.3 11.3 149 1-151 305-503 (503)
81 KOG0299 U3 snoRNP-associated p 99.9 3E-22 6.5E-27 142.8 13.4 156 1-161 208-364 (479)
82 KOG0305 Anaphase promoting com 99.9 7.6E-22 1.6E-26 145.3 14.9 151 1-155 307-463 (484)
83 KOG0643 Translation initiation 99.9 7.8E-22 1.7E-26 132.5 13.4 150 3-154 60-318 (327)
84 KOG1273 WD40 repeat protein [G 99.9 1.7E-21 3.8E-26 133.6 15.1 156 1-157 29-230 (405)
85 KOG0289 mRNA splicing factor [ 99.9 2.6E-21 5.6E-26 137.4 16.1 151 2-154 310-463 (506)
86 KOG0275 Conserved WD40 repeat- 99.9 1.2E-22 2.5E-27 140.2 8.9 155 1-157 269-427 (508)
87 KOG0313 Microtubule binding pr 99.9 7.9E-22 1.7E-26 137.9 12.6 148 2-154 267-419 (423)
88 KOG0772 Uncharacterized conser 99.9 8.9E-22 1.9E-26 142.6 12.9 157 1-157 220-398 (641)
89 KOG0283 WD40 repeat-containing 99.9 2.2E-21 4.8E-26 146.9 14.8 151 1-156 375-535 (712)
90 KOG0294 WD40 repeat-containing 99.9 4E-21 8.6E-26 131.6 14.6 148 5-155 51-283 (362)
91 KOG0268 Sof1-like rRNA process 99.9 2.6E-22 5.6E-27 139.7 8.8 162 2-165 194-357 (433)
92 KOG1407 WD40 repeat protein [F 99.9 5E-21 1.1E-25 128.2 14.4 148 2-153 154-311 (313)
93 KOG1446 Histone H3 (Lys4) meth 99.9 2E-20 4.2E-25 128.1 16.6 159 1-161 106-270 (311)
94 KOG0306 WD40-repeat-containing 99.9 4.8E-21 1E-25 144.0 14.6 156 2-160 419-587 (888)
95 KOG0308 Conserved WD40 repeat- 99.9 5.2E-21 1.1E-25 141.8 14.5 150 4-156 127-288 (735)
96 KOG0274 Cdc4 and related F-box 99.9 3.3E-21 7.2E-26 145.8 13.6 153 4-164 298-452 (537)
97 KOG1446 Histone H3 (Lys4) meth 99.9 4.5E-20 9.7E-25 126.3 17.1 154 1-159 20-176 (311)
98 KOG1274 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 143.9 16.1 153 1-154 102-263 (933)
99 KOG0267 Microtubule severing p 99.9 6.6E-22 1.4E-26 148.0 8.4 154 6-162 39-193 (825)
100 KOG0639 Transducin-like enhanc 99.9 1.3E-21 2.8E-26 141.5 8.4 160 2-165 472-634 (705)
101 KOG0973 Histone transcription 99.9 1.8E-20 3.9E-25 145.4 15.0 156 1-157 135-359 (942)
102 KOG0288 WD40 repeat protein Ti 99.8 9.5E-21 2.1E-25 133.8 10.0 163 1-165 225-429 (459)
103 KOG0303 Actin-binding protein 99.8 4E-20 8.7E-25 130.2 12.7 155 1-158 87-254 (472)
104 KOG0270 WD40 repeat-containing 99.8 1.8E-19 4E-24 128.3 15.8 154 7-163 256-414 (463)
105 KOG1036 Mitotic spindle checkp 99.8 3E-19 6.4E-24 122.0 16.2 149 1-158 19-168 (323)
106 KOG2096 WD40 repeat protein [G 99.8 7.2E-20 1.6E-24 126.0 13.1 151 1-155 92-310 (420)
107 KOG0641 WD40 repeat protein [G 99.8 4.9E-19 1.1E-23 116.9 16.3 159 1-160 38-268 (350)
108 KOG0300 WD40 repeat-containing 99.8 9.9E-20 2.1E-24 125.5 13.4 152 3-157 280-432 (481)
109 KOG4283 Transcription-coupled 99.8 1.7E-19 3.7E-24 123.0 13.7 146 6-155 55-221 (397)
110 KOG1007 WD repeat protein TSSC 99.8 1.7E-19 3.6E-24 122.7 13.3 158 1-162 129-298 (370)
111 KOG1539 WD repeat protein [Gen 99.8 9.8E-20 2.1E-24 138.3 13.2 155 1-159 454-612 (910)
112 KOG0772 Uncharacterized conser 99.8 1.3E-19 2.7E-24 131.6 13.1 154 1-156 323-490 (641)
113 KOG1332 Vesicle coat complex C 99.8 5.6E-19 1.2E-23 117.5 13.7 148 6-155 22-195 (299)
114 KOG0639 Transducin-like enhanc 99.8 1.7E-19 3.8E-24 130.7 11.5 149 1-152 515-703 (705)
115 KOG0647 mRNA export protein (c 99.8 1.4E-18 3E-23 118.7 14.5 157 1-159 78-287 (347)
116 KOG0294 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 119.7 14.1 147 9-160 3-164 (362)
117 KOG0278 Serine/threonine kinas 99.8 3.4E-20 7.4E-25 123.7 6.3 151 5-160 69-220 (334)
118 KOG1408 WD40 repeat protein [F 99.8 4.2E-19 9E-24 133.6 12.5 102 51-154 610-714 (1080)
119 KOG0302 Ribosome Assembly prot 99.8 1.3E-18 2.8E-23 122.0 14.0 146 1-151 263-436 (440)
120 KOG4283 Transcription-coupled 99.8 1.3E-18 2.9E-23 118.7 13.4 152 3-158 109-281 (397)
121 KOG0301 Phospholipase A2-activ 99.8 4.9E-19 1.1E-23 132.2 12.3 136 9-153 114-249 (745)
122 KOG0288 WD40 repeat protein Ti 99.8 1.5E-18 3.2E-23 122.8 13.9 143 7-151 312-459 (459)
123 PF08662 eIF2A: Eukaryotic tra 99.8 9.3E-18 2E-22 112.7 17.0 148 1-156 11-182 (194)
124 KOG1332 Vesicle coat complex C 99.8 6.3E-19 1.4E-23 117.2 10.7 147 6-154 69-242 (299)
125 KOG0641 WD40 repeat protein [G 99.8 6.5E-18 1.4E-22 111.7 15.2 148 3-153 190-349 (350)
126 KOG1188 WD40 repeat protein [G 99.8 4.5E-18 9.8E-23 117.9 14.1 147 8-155 41-198 (376)
127 KOG0303 Actin-binding protein 99.8 1.6E-18 3.5E-23 122.2 12.1 124 32-158 76-208 (472)
128 KOG0299 U3 snoRNP-associated p 99.8 1.6E-18 3.6E-23 124.0 12.1 154 1-157 148-320 (479)
129 KOG0771 Prolactin regulatory e 99.8 1.7E-18 3.8E-23 122.6 12.0 151 1-154 150-355 (398)
130 KOG0300 WD40 repeat-containing 99.8 6.1E-19 1.3E-23 121.6 8.8 145 9-155 162-346 (481)
131 KOG0268 Sof1-like rRNA process 99.8 1.5E-18 3.3E-23 121.1 10.8 149 8-160 80-309 (433)
132 KOG1445 Tumor-specific antigen 99.8 7.8E-19 1.7E-23 130.7 9.6 156 1-158 633-803 (1012)
133 KOG4328 WD40 protein [Function 99.8 5E-18 1.1E-22 121.6 13.2 151 1-153 192-399 (498)
134 KOG1274 WD40 repeat protein [G 99.8 1.7E-17 3.6E-22 127.4 16.4 155 1-160 19-175 (933)
135 KOG1445 Tumor-specific antigen 99.8 2.4E-18 5.2E-23 128.2 10.8 151 5-157 589-754 (1012)
136 KOG1539 WD repeat protein [Gen 99.8 6.5E-18 1.4E-22 128.6 12.7 144 6-154 504-649 (910)
137 KOG2445 Nuclear pore complex c 99.8 8.3E-17 1.8E-21 110.4 16.9 153 1-156 19-259 (361)
138 KOG2110 Uncharacterized conser 99.8 8.7E-17 1.9E-21 112.6 17.3 147 7-156 97-251 (391)
139 KOG1034 Transcriptional repres 99.8 1.1E-16 2.3E-21 110.7 16.8 145 8-156 56-214 (385)
140 KOG2919 Guanine nucleotide-bin 99.8 1.6E-17 3.5E-22 114.7 12.6 152 1-155 164-329 (406)
141 KOG0301 Phospholipase A2-activ 99.8 4E-17 8.7E-22 122.1 15.0 142 4-156 149-291 (745)
142 KOG0649 WD40 repeat protein [G 99.8 5.8E-17 1.2E-21 108.1 14.2 157 2-162 17-195 (325)
143 KOG1034 Transcriptional repres 99.8 5.6E-17 1.2E-21 112.1 13.5 151 2-153 142-383 (385)
144 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-17 5.4E-22 120.7 12.3 155 1-157 300-565 (577)
145 KOG2096 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 112.6 12.7 146 2-151 235-400 (420)
146 KOG2048 WD40 repeat protein [G 99.8 2.2E-16 4.7E-21 117.9 17.4 155 1-159 31-190 (691)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.6E-16 1.2E-20 110.9 18.8 151 1-157 36-191 (300)
148 KOG1036 Mitotic spindle checkp 99.7 1E-16 2.3E-21 109.7 14.0 156 2-160 101-269 (323)
149 KOG1009 Chromatin assembly com 99.7 1.4E-17 3E-22 117.7 9.6 156 2-159 20-201 (434)
150 KOG1007 WD repeat protein TSSC 99.7 1E-16 2.2E-21 109.2 13.0 153 2-157 177-365 (370)
151 KOG0322 G-protein beta subunit 99.7 4.3E-17 9.2E-22 109.7 10.6 142 9-152 167-322 (323)
152 KOG4378 Nuclear protein COP1 [ 99.7 3.6E-17 7.8E-22 118.7 10.9 151 6-159 90-245 (673)
153 KOG2919 Guanine nucleotide-bin 99.7 1.1E-16 2.5E-21 110.5 12.8 142 1-144 213-361 (406)
154 KOG2055 WD40 repeat protein [G 99.7 1.1E-16 2.4E-21 115.0 12.9 158 1-161 219-382 (514)
155 KOG1063 RNA polymerase II elon 99.7 1.5E-16 3.2E-21 119.2 13.8 151 1-153 531-699 (764)
156 KOG2048 WD40 repeat protein [G 99.7 6.1E-16 1.3E-20 115.6 17.0 157 1-160 75-240 (691)
157 KOG0290 Conserved WD40 repeat- 99.7 3E-16 6.5E-21 107.0 13.8 149 6-157 162-322 (364)
158 KOG0270 WD40 repeat-containing 99.7 8.4E-17 1.8E-21 114.9 11.6 147 6-156 191-363 (463)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.3E-15 2.7E-20 109.0 18.0 144 7-156 1-148 (300)
160 KOG0321 WD40 repeat-containing 99.7 2.3E-16 5E-21 117.3 14.0 159 2-161 107-309 (720)
161 KOG2055 WD40 repeat protein [G 99.7 7.2E-16 1.6E-20 110.8 14.9 152 2-156 264-420 (514)
162 KOG0321 WD40 repeat-containing 99.7 3.3E-16 7.2E-21 116.5 13.1 150 6-158 63-253 (720)
163 KOG3881 Uncharacterized conser 99.7 7.3E-16 1.6E-20 108.7 13.5 148 7-156 161-323 (412)
164 KOG0646 WD40 repeat protein [G 99.7 4E-16 8.8E-21 112.0 12.2 147 8-157 51-210 (476)
165 KOG1523 Actin-related protein 99.7 8.6E-16 1.9E-20 106.0 13.1 151 1-152 16-175 (361)
166 KOG2106 Uncharacterized conser 99.7 1.8E-15 4E-20 110.0 15.2 144 1-151 374-519 (626)
167 KOG0307 Vesicle coat complex C 99.7 6.1E-17 1.3E-21 126.8 8.2 158 1-161 122-292 (1049)
168 KOG2445 Nuclear pore complex c 99.7 3.9E-15 8.5E-20 102.3 14.7 146 6-154 72-319 (361)
169 KOG4378 Nuclear protein COP1 [ 99.7 2.4E-15 5.3E-20 109.3 13.9 152 2-156 128-283 (673)
170 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-15 4.1E-20 110.7 12.8 93 37-132 290-383 (636)
171 KOG1188 WD40 repeat protein [G 99.7 4.3E-15 9.4E-20 103.3 14.0 157 6-164 83-253 (376)
172 KOG1273 WD40 repeat protein [G 99.7 2.7E-15 6E-20 103.5 12.8 111 40-154 26-138 (405)
173 KOG1538 Uncharacterized conser 99.7 6.4E-16 1.4E-20 116.1 10.1 145 1-154 18-163 (1081)
174 COG2319 FOG: WD40 repeat [Gene 99.7 2.1E-14 4.6E-19 106.2 18.1 154 1-157 161-318 (466)
175 KOG0650 WD40 repeat nucleolar 99.7 8.1E-16 1.8E-20 113.8 9.8 147 2-150 573-732 (733)
176 KOG0307 Vesicle coat complex C 99.6 8.9E-16 1.9E-20 120.4 9.4 155 2-158 168-332 (1049)
177 KOG0974 WD-repeat protein WDR6 99.6 3.7E-15 8.1E-20 116.0 12.7 154 3-160 141-295 (967)
178 KOG1272 WD40-repeat-containing 99.6 1.6E-15 3.5E-20 109.3 9.5 156 2-160 136-330 (545)
179 KOG0649 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 93.6 15.6 147 2-156 121-277 (325)
180 KOG1310 WD40 repeat protein [G 99.6 2.9E-15 6.4E-20 110.2 9.5 153 1-155 56-233 (758)
181 PRK01742 tolB translocation pr 99.6 3.3E-14 7.2E-19 106.9 15.3 150 1-157 209-365 (429)
182 KOG2110 Uncharacterized conser 99.6 2E-13 4.3E-18 96.0 17.4 153 2-155 134-332 (391)
183 PRK11028 6-phosphogluconolacto 99.6 1.7E-13 3.8E-18 99.8 18.0 151 1-154 40-206 (330)
184 KOG2106 Uncharacterized conser 99.6 1.7E-13 3.7E-18 100.0 17.2 149 1-152 413-625 (626)
185 PRK02889 tolB translocation pr 99.6 1.8E-13 3.9E-18 102.8 17.8 154 1-158 201-365 (427)
186 PRK01742 tolB translocation pr 99.6 6.3E-14 1.4E-18 105.4 14.5 144 1-153 253-401 (429)
187 COG2319 FOG: WD40 repeat [Gene 99.6 2.8E-13 6E-18 100.2 17.9 150 4-157 119-275 (466)
188 KOG2394 WD40 protein DMR-N9 [G 99.6 3.5E-14 7.7E-19 104.1 12.3 150 5-156 183-365 (636)
189 KOG2111 Uncharacterized conser 99.6 4.7E-13 1E-17 92.5 16.8 147 9-157 106-260 (346)
190 KOG1524 WD40 repeat-containing 99.6 2.1E-14 4.6E-19 105.5 10.7 148 7-160 75-223 (737)
191 KOG1063 RNA polymerase II elon 99.6 1.7E-14 3.7E-19 108.4 10.3 121 32-155 520-650 (764)
192 KOG0644 Uncharacterized conser 99.6 2.3E-15 5.1E-20 115.3 5.5 154 2-162 197-435 (1113)
193 KOG1523 Actin-related protein 99.6 9.5E-14 2.1E-18 96.0 12.1 153 1-156 61-239 (361)
194 PRK11028 6-phosphogluconolacto 99.6 4.4E-13 9.5E-18 97.7 16.4 151 1-154 131-305 (330)
195 KOG1272 WD40-repeat-containing 99.6 1.2E-14 2.6E-19 104.8 7.9 145 1-151 215-360 (545)
196 KOG1587 Cytoplasmic dynein int 99.6 1.3E-13 2.8E-18 104.6 13.5 160 2-163 249-482 (555)
197 KOG1524 WD40 repeat-containing 99.6 6.9E-14 1.5E-18 102.9 11.5 127 2-134 111-238 (737)
198 KOG1009 Chromatin assembly com 99.6 5.9E-14 1.3E-18 99.6 10.8 122 37-160 13-160 (434)
199 KOG1310 WD40 repeat protein [G 99.6 2.4E-14 5.3E-19 105.4 9.2 126 30-157 43-182 (758)
200 PRK03629 tolB translocation pr 99.6 7E-13 1.5E-17 99.7 17.0 152 1-157 248-410 (429)
201 PRK05137 tolB translocation pr 99.5 7.4E-13 1.6E-17 99.9 16.7 148 2-155 208-368 (435)
202 PF08662 eIF2A: Eukaryotic tra 99.5 2.6E-13 5.6E-18 91.3 12.8 110 1-118 65-186 (194)
203 KOG4227 WD40 repeat protein [G 99.5 2.6E-13 5.6E-18 96.6 13.1 155 1-156 62-228 (609)
204 KOG4328 WD40 protein [Function 99.5 1.6E-13 3.4E-18 98.9 12.1 154 2-156 286-453 (498)
205 KOG2139 WD40 repeat protein [G 99.5 3.1E-13 6.8E-18 95.0 12.9 150 1-153 104-268 (445)
206 KOG1517 Guanine nucleotide bin 99.5 4.8E-13 1E-17 105.2 14.4 155 2-158 1172-1338(1387)
207 KOG0644 Uncharacterized conser 99.5 1E-14 2.2E-19 111.9 4.7 116 31-153 184-300 (1113)
208 KOG0642 Cell-cycle nuclear pro 99.5 8.2E-14 1.8E-18 102.5 8.7 124 32-157 289-430 (577)
209 PRK03629 tolB translocation pr 99.5 3E-12 6.6E-17 96.3 17.0 151 1-157 204-367 (429)
210 TIGR02800 propeller_TolB tol-p 99.5 3.6E-12 7.7E-17 95.7 17.2 149 2-156 196-357 (417)
211 KOG1963 WD40 repeat protein [G 99.5 3.4E-12 7.3E-17 98.4 16.6 156 2-161 167-330 (792)
212 PRK04922 tolB translocation pr 99.5 4.9E-12 1.1E-16 95.4 17.2 152 1-158 209-373 (433)
213 KOG1963 WD40 repeat protein [G 99.5 2.1E-12 4.6E-17 99.4 15.0 156 2-160 212-382 (792)
214 PRK04922 tolB translocation pr 99.5 6E-12 1.3E-16 94.9 17.0 148 1-155 253-413 (433)
215 KOG0771 Prolactin regulatory e 99.5 4.9E-13 1.1E-17 95.3 9.9 116 41-161 148-319 (398)
216 KOG1517 Guanine nucleotide bin 99.5 1.9E-12 4.1E-17 102.0 13.7 148 6-156 1220-1384(1387)
217 KOG1408 WD40 repeat protein [F 99.5 7.5E-13 1.6E-17 100.5 11.0 109 1-111 602-714 (1080)
218 KOG1538 Uncharacterized conser 99.5 4.9E-12 1.1E-16 95.7 15.1 150 1-156 138-296 (1081)
219 KOG0650 WD40 repeat nucleolar 99.5 6.3E-13 1.4E-17 98.9 10.1 148 1-152 527-679 (733)
220 KOG2321 WD40 repeat protein [G 99.5 3.9E-12 8.4E-17 94.4 13.4 150 10-161 148-310 (703)
221 PRK01029 tolB translocation pr 99.4 1.5E-11 3.4E-16 92.3 16.9 155 2-159 237-409 (428)
222 PF02239 Cytochrom_D1: Cytochr 99.4 3.1E-11 6.7E-16 88.8 17.7 150 2-156 43-205 (369)
223 PRK02889 tolB translocation pr 99.4 1.2E-11 2.7E-16 93.0 16.0 148 1-153 245-403 (427)
224 KOG1240 Protein kinase contain 99.4 9.8E-12 2.1E-16 99.2 15.4 161 4-165 1058-1237(1431)
225 KOG2139 WD40 repeat protein [G 99.4 8.1E-12 1.8E-16 88.1 13.4 153 1-156 201-386 (445)
226 PRK05137 tolB translocation pr 99.4 2.4E-11 5.2E-16 91.7 16.5 149 2-157 252-416 (435)
227 KOG2111 Uncharacterized conser 99.4 5.1E-11 1.1E-15 82.7 16.1 95 16-111 158-257 (346)
228 KOG3881 Uncharacterized conser 99.4 3.8E-12 8.3E-17 90.2 10.8 131 2-135 209-343 (412)
229 PRK00178 tolB translocation pr 99.4 5.6E-11 1.2E-15 89.7 16.9 150 2-157 205-367 (430)
230 PRK04792 tolB translocation pr 99.4 7.8E-11 1.7E-15 89.1 17.5 150 2-157 224-386 (448)
231 KOG4227 WD40 repeat protein [G 99.4 6.8E-12 1.5E-16 89.5 10.6 125 32-156 51-182 (609)
232 KOG4547 WD40 repeat-containing 99.4 5E-11 1.1E-15 88.5 15.4 146 6-156 69-223 (541)
233 KOG0280 Uncharacterized conser 99.4 1.3E-11 2.8E-16 84.8 11.2 155 1-158 127-289 (339)
234 KOG2321 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 91.2 12.1 155 2-159 182-349 (703)
235 KOG1587 Cytoplasmic dynein int 99.4 2.3E-11 5E-16 92.6 12.8 156 2-159 354-522 (555)
236 KOG0974 WD-repeat protein WDR6 99.3 7.4E-11 1.6E-15 92.7 14.6 148 5-158 97-251 (967)
237 KOG3914 WD repeat protein WDR4 99.3 1.1E-10 2.4E-15 83.2 13.7 153 2-160 69-230 (390)
238 KOG0290 Conserved WD40 repeat- 99.3 4.4E-11 9.5E-16 82.2 11.2 144 1-148 202-360 (364)
239 PRK01029 tolB translocation pr 99.3 3E-10 6.5E-15 85.4 16.7 156 2-159 191-365 (428)
240 PF02239 Cytochrom_D1: Cytochr 99.3 7.3E-10 1.6E-14 81.6 17.6 146 7-155 5-160 (369)
241 KOG2315 Predicted translation 99.3 6E-10 1.3E-14 82.6 15.1 131 17-156 251-393 (566)
242 KOG2695 WD40 repeat protein [G 99.3 4.8E-11 1E-15 83.8 9.0 151 11-165 228-388 (425)
243 KOG4497 Uncharacterized conser 99.3 4.9E-10 1.1E-14 78.5 13.9 144 3-151 56-238 (447)
244 PRK04792 tolB translocation pr 99.3 1.1E-09 2.5E-14 82.9 16.7 147 2-155 268-427 (448)
245 COG4946 Uncharacterized protei 99.2 3E-09 6.6E-14 78.0 17.6 144 6-156 331-480 (668)
246 KOG4547 WD40 repeat-containing 99.2 1.4E-09 3E-14 81.1 15.6 152 4-159 2-178 (541)
247 PRK00178 tolB translocation pr 99.2 1.5E-09 3.4E-14 81.9 16.4 147 2-155 249-408 (430)
248 TIGR02800 propeller_TolB tol-p 99.2 1.1E-09 2.4E-14 82.4 15.5 147 1-154 239-398 (417)
249 KOG0322 G-protein beta subunit 99.2 4.3E-11 9.3E-16 81.2 6.6 97 11-109 221-322 (323)
250 PF10282 Lactonase: Lactonase, 99.2 1.3E-08 2.8E-13 74.8 19.6 152 1-153 149-322 (345)
251 KOG0280 Uncharacterized conser 99.2 3.3E-09 7.1E-14 73.2 14.8 146 9-156 87-244 (339)
252 PF15492 Nbas_N: Neuroblastoma 99.2 2.1E-08 4.6E-13 69.1 18.5 165 1-166 49-272 (282)
253 PF10282 Lactonase: Lactonase, 99.2 2.3E-08 5E-13 73.4 19.5 153 1-153 42-222 (345)
254 KOG1409 Uncharacterized conser 99.2 9.8E-10 2.1E-14 77.3 11.4 97 12-109 170-269 (404)
255 KOG4497 Uncharacterized conser 99.1 6.8E-10 1.5E-14 77.8 10.1 136 2-143 15-153 (447)
256 PLN02919 haloacid dehalogenase 99.1 1.1E-08 2.4E-13 84.5 18.7 156 1-157 688-892 (1057)
257 PRK04043 tolB translocation pr 99.1 1.2E-08 2.7E-13 76.5 17.3 149 2-158 194-362 (419)
258 COG2706 3-carboxymuconate cycl 99.1 2.6E-08 5.6E-13 70.6 17.4 154 1-155 45-223 (346)
259 KOG3914 WD repeat protein WDR4 99.1 3.5E-10 7.5E-15 80.7 8.1 98 19-118 134-231 (390)
260 KOG1064 RAVE (regulator of V-A 99.1 2.2E-10 4.8E-15 94.8 8.1 147 1-162 2257-2407(2439)
261 PF00400 WD40: WD domain, G-be 99.1 5.5E-10 1.2E-14 55.0 5.7 38 28-65 2-39 (39)
262 PF00400 WD40: WD domain, G-be 99.1 7.1E-10 1.5E-14 54.6 5.8 39 112-151 1-39 (39)
263 KOG1334 WD40 repeat protein [G 99.1 3.2E-10 6.8E-15 82.9 5.9 150 2-153 288-466 (559)
264 KOG1275 PAB-dependent poly(A) 99.0 1.6E-08 3.4E-13 79.5 13.7 143 5-153 185-342 (1118)
265 KOG1334 WD40 repeat protein [G 99.0 1.2E-09 2.5E-14 80.1 7.1 157 1-158 148-317 (559)
266 COG2706 3-carboxymuconate cycl 99.0 1.7E-07 3.6E-12 66.6 17.5 154 2-156 151-324 (346)
267 KOG4714 Nucleoporin [Nuclear s 99.0 1.8E-09 3.9E-14 73.4 7.4 146 7-155 101-256 (319)
268 KOG2695 WD40 repeat protein [G 99.0 2.7E-09 5.9E-14 75.2 8.1 127 3-132 260-401 (425)
269 KOG4190 Uncharacterized conser 99.0 5.2E-09 1.1E-13 78.4 10.0 154 6-163 746-916 (1034)
270 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.9E-07 6.2E-12 67.1 18.7 158 1-161 110-338 (352)
271 KOG1064 RAVE (regulator of V-A 99.0 2.2E-09 4.7E-14 89.3 8.1 151 4-162 2217-2375(2439)
272 KOG2041 WD40 repeat protein [G 99.0 4.5E-09 9.8E-14 80.7 8.9 152 1-155 20-188 (1189)
273 KOG1354 Serine/threonine prote 99.0 1E-08 2.2E-13 72.4 9.6 153 2-157 171-363 (433)
274 COG4946 Uncharacterized protei 98.9 1.2E-07 2.5E-12 70.0 15.2 135 3-142 367-507 (668)
275 KOG4714 Nucleoporin [Nuclear s 98.9 6.5E-09 1.4E-13 70.8 7.9 72 38-110 180-254 (319)
276 PRK04043 tolB translocation pr 98.9 9.8E-08 2.1E-12 71.7 15.1 148 2-157 239-404 (419)
277 KOG4532 WD40-like repeat conta 98.9 1.6E-07 3.5E-12 64.5 14.2 149 10-159 131-288 (344)
278 KOG1409 Uncharacterized conser 98.9 4E-08 8.6E-13 69.4 11.6 154 2-157 75-274 (404)
279 KOG1912 WD40 repeat protein [G 98.9 2.2E-07 4.7E-12 72.3 15.0 148 2-154 22-187 (1062)
280 KOG0309 Conserved WD40 repeat- 98.9 8.2E-09 1.8E-13 79.5 7.1 147 11-159 85-238 (1081)
281 KOG1240 Protein kinase contain 98.9 1.6E-07 3.6E-12 76.0 14.3 157 2-160 1105-1280(1431)
282 KOG1354 Serine/threonine prote 98.8 1.6E-07 3.4E-12 66.5 11.5 151 2-154 91-302 (433)
283 KOG4532 WD40-like repeat conta 98.8 6.8E-07 1.5E-11 61.5 14.2 147 6-157 83-237 (344)
284 KOG2315 Predicted translation 98.8 1.2E-07 2.7E-12 70.7 11.2 124 1-133 276-410 (566)
285 PF07433 DUF1513: Protein of u 98.8 2.1E-06 4.5E-11 60.9 16.7 159 2-165 57-259 (305)
286 KOG2314 Translation initiation 98.8 1.1E-07 2.3E-12 71.2 10.6 136 1-142 216-365 (698)
287 KOG2066 Vacuolar assembly/sort 98.8 6.9E-07 1.5E-11 69.6 14.7 143 7-165 49-199 (846)
288 PLN02919 haloacid dehalogenase 98.7 3.9E-06 8.4E-11 69.9 19.4 153 1-156 629-836 (1057)
289 KOG1912 WD40 repeat protein [G 98.7 1.3E-07 2.8E-12 73.4 10.0 104 9-112 439-553 (1062)
290 PF08450 SGL: SMP-30/Gluconola 98.7 4.6E-06 9.9E-11 58.5 17.2 137 1-141 91-243 (246)
291 KOG0309 Conserved WD40 repeat- 98.7 3.3E-08 7.2E-13 76.3 6.8 152 2-155 121-341 (1081)
292 PF11768 DUF3312: Protein of u 98.7 2.1E-06 4.6E-11 64.9 14.9 74 80-156 258-332 (545)
293 TIGR03300 assembly_YfgL outer 98.7 1.3E-06 2.7E-11 65.1 13.6 136 7-150 241-376 (377)
294 PF11768 DUF3312: Protein of u 98.7 7.7E-07 1.7E-11 67.2 11.9 73 35-111 257-330 (545)
295 COG5354 Uncharacterized protei 98.7 2.4E-06 5.1E-11 63.5 14.1 146 2-156 229-398 (561)
296 TIGR02658 TTQ_MADH_Hv methylam 98.6 7E-06 1.5E-10 60.0 16.2 112 6-121 11-147 (352)
297 KOG1832 HIV-1 Vpr-binding prot 98.6 2.7E-08 5.9E-13 78.3 3.4 145 1-155 1107-1257(1516)
298 COG0823 TolB Periplasmic compo 98.6 2.7E-06 5.9E-11 63.9 13.9 151 2-156 199-361 (425)
299 KOG2066 Vacuolar assembly/sort 98.6 2.4E-06 5.2E-11 66.7 13.4 141 6-154 82-234 (846)
300 KOG1645 RING-finger-containing 98.6 1.7E-06 3.7E-11 62.6 11.0 86 1-87 199-287 (463)
301 KOG0882 Cyclophilin-related pe 98.6 2.2E-06 4.7E-11 63.0 11.2 159 2-162 60-240 (558)
302 COG0823 TolB Periplasmic compo 98.5 1.9E-06 4.2E-11 64.7 11.2 137 2-142 244-388 (425)
303 PF04762 IKI3: IKI3 family; I 98.5 6E-06 1.3E-10 67.8 14.5 151 1-156 126-336 (928)
304 PF15492 Nbas_N: Neuroblastoma 98.5 2.5E-05 5.4E-10 54.3 15.2 139 1-142 3-166 (282)
305 PF04762 IKI3: IKI3 family; I 98.5 6.4E-06 1.4E-10 67.6 14.0 148 1-153 215-379 (928)
306 KOG2041 WD40 repeat protein [G 98.5 2E-06 4.3E-11 66.7 10.3 117 37-154 14-146 (1189)
307 PF13360 PQQ_2: PQQ-like domai 98.5 9E-05 2E-09 51.5 17.9 145 6-157 75-234 (238)
308 TIGR03300 assembly_YfgL outer 98.5 2.8E-05 6E-10 58.0 15.9 144 6-157 64-212 (377)
309 PF04053 Coatomer_WDAD: Coatom 98.5 2.6E-05 5.6E-10 59.0 15.6 138 1-155 38-175 (443)
310 PRK02888 nitrous-oxide reducta 98.5 2E-05 4.4E-10 61.1 15.1 93 17-111 296-405 (635)
311 KOG2114 Vacuolar assembly/sort 98.5 1.2E-05 2.6E-10 63.4 14.0 154 2-156 30-204 (933)
312 PF13360 PQQ_2: PQQ-like domai 98.4 5.7E-05 1.2E-09 52.5 16.0 146 5-156 34-194 (238)
313 PF08553 VID27: VID27 cytoplas 98.4 1.6E-05 3.5E-10 63.5 14.2 137 15-153 502-647 (794)
314 PF08450 SGL: SMP-30/Gluconola 98.4 0.0002 4.3E-09 50.2 18.8 146 2-154 46-214 (246)
315 KOG4640 Anaphase-promoting com 98.4 1.1E-06 2.5E-11 66.8 7.4 85 1-87 26-111 (665)
316 KOG4190 Uncharacterized conser 98.4 6.4E-07 1.4E-11 67.5 5.9 123 31-156 729-862 (1034)
317 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00017 3.8E-09 49.9 15.9 141 7-151 23-163 (354)
318 KOG2314 Translation initiation 98.4 1.8E-05 3.9E-10 59.8 12.1 149 2-155 400-575 (698)
319 COG5170 CDC55 Serine/threonine 98.3 2.6E-06 5.6E-11 60.0 7.2 149 2-153 179-367 (460)
320 PF07433 DUF1513: Protein of u 98.3 0.00016 3.5E-09 51.5 16.1 140 1-142 10-181 (305)
321 PRK02888 nitrous-oxide reducta 98.3 6.6E-05 1.4E-09 58.3 14.6 146 4-154 201-405 (635)
322 KOG3621 WD40 repeat-containing 98.3 9.8E-06 2.1E-10 62.6 9.7 116 36-154 32-155 (726)
323 KOG2444 WD40 repeat protein [G 98.3 8.5E-06 1.8E-10 54.9 8.1 110 48-158 69-182 (238)
324 COG5170 CDC55 Serine/threonine 98.2 3E-05 6.5E-10 54.8 10.0 119 35-156 170-312 (460)
325 KOG3621 WD40 repeat-containing 98.2 1.3E-05 2.7E-10 62.0 8.8 110 2-111 40-155 (726)
326 PRK11138 outer membrane biogen 98.2 0.00024 5.2E-09 53.4 15.6 135 7-152 256-393 (394)
327 KOG1275 PAB-dependent poly(A) 98.2 3.4E-05 7.3E-10 61.5 10.8 139 6-151 146-294 (1118)
328 COG3391 Uncharacterized conser 98.2 0.0009 2E-08 50.1 18.1 153 1-157 121-287 (381)
329 KOG3617 WD40 and TPR repeat-co 98.2 5.1E-05 1.1E-09 60.4 11.6 67 1-67 65-131 (1416)
330 KOG1008 Uncharacterized conser 98.1 7.3E-07 1.6E-11 68.0 1.2 150 2-155 109-277 (783)
331 KOG1920 IkappaB kinase complex 98.1 0.00071 1.5E-08 55.9 17.6 152 2-157 75-278 (1265)
332 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.0004 8.6E-09 41.9 13.8 101 40-149 2-110 (111)
333 KOG2395 Protein involved in va 98.1 0.0001 2.3E-09 55.6 11.7 143 6-153 344-500 (644)
334 smart00320 WD40 WD40 repeats. 98.1 1.4E-05 3.1E-10 37.9 4.9 38 28-65 3-40 (40)
335 smart00320 WD40 WD40 repeats. 98.1 1.6E-05 3.4E-10 37.7 5.0 38 113-151 3-40 (40)
336 KOG4640 Anaphase-promoting com 98.1 3.2E-05 6.9E-10 59.2 8.4 93 37-132 20-114 (665)
337 KOG1920 IkappaB kinase complex 98.0 0.00028 6.1E-09 58.0 13.5 151 1-155 115-324 (1265)
338 KOG2114 Vacuolar assembly/sort 98.0 0.00088 1.9E-08 53.5 15.1 147 8-157 78-247 (933)
339 KOG1645 RING-finger-containing 98.0 5.4E-05 1.2E-09 55.1 7.6 81 73-156 186-269 (463)
340 COG5354 Uncharacterized protei 98.0 0.00014 2.9E-09 54.6 9.7 129 17-152 11-159 (561)
341 PRK13616 lipoprotein LpqB; Pro 97.9 0.00064 1.4E-08 53.6 13.9 140 2-151 356-523 (591)
342 KOG1832 HIV-1 Vpr-binding prot 97.9 1.7E-05 3.6E-10 63.3 5.1 124 30-160 1094-1221(1516)
343 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.00038 8.2E-09 51.6 12.0 63 4-68 1-72 (353)
344 PRK11138 outer membrane biogen 97.9 0.0013 2.9E-08 49.5 14.8 144 6-157 68-227 (394)
345 COG3391 Uncharacterized conser 97.9 0.0053 1.1E-07 46.1 17.5 149 2-156 80-242 (381)
346 PF02897 Peptidase_S9_N: Proly 97.8 0.007 1.5E-07 45.9 17.4 152 2-156 130-312 (414)
347 PF03178 CPSF_A: CPSF A subuni 97.8 0.0063 1.4E-07 44.5 17.1 142 7-154 42-203 (321)
348 PF00780 CNH: CNH domain; Int 97.8 0.0054 1.2E-07 43.7 17.1 147 3-159 3-171 (275)
349 KOG3617 WD40 and TPR repeat-co 97.8 5.2E-05 1.1E-09 60.3 5.7 105 2-110 22-131 (1416)
350 KOG1008 Uncharacterized conser 97.7 8.6E-06 1.9E-10 62.4 0.8 139 8-151 71-223 (783)
351 COG3386 Gluconolactonase [Carb 97.7 0.0081 1.7E-07 43.6 15.1 136 3-142 118-274 (307)
352 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0035 7.6E-08 37.9 12.3 89 8-105 16-109 (111)
353 PRK13616 lipoprotein LpqB; Pro 97.6 0.0027 5.9E-08 50.1 12.9 104 38-149 350-472 (591)
354 KOG0882 Cyclophilin-related pe 97.6 0.00063 1.4E-08 50.5 8.2 147 6-154 19-175 (558)
355 PF04053 Coatomer_WDAD: Coatom 97.6 0.019 4.2E-07 43.8 16.4 136 7-154 117-263 (443)
356 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0064 1.4E-07 42.4 12.3 70 7-77 63-132 (354)
357 PF06977 SdiA-regulated: SdiA- 97.5 0.014 3E-07 41.0 17.5 151 1-154 27-202 (248)
358 KOG2079 Vacuolar assembly/sort 97.5 0.00051 1.1E-08 56.1 7.8 101 48-152 98-202 (1206)
359 PF14583 Pectate_lyase22: Olig 97.5 0.0091 2E-07 44.3 13.5 137 2-142 42-206 (386)
360 KOG2079 Vacuolar assembly/sort 97.5 0.00059 1.3E-08 55.7 7.6 96 7-104 99-199 (1206)
361 PF03178 CPSF_A: CPSF A subuni 97.5 0.023 5E-07 41.6 16.2 141 7-150 98-262 (321)
362 COG3490 Uncharacterized protei 97.5 0.016 3.5E-07 41.1 13.3 160 2-162 120-319 (366)
363 PF08596 Lgl_C: Lethal giant l 97.4 0.011 2.4E-07 44.5 13.2 114 39-153 3-173 (395)
364 PF06977 SdiA-regulated: SdiA- 97.4 0.02 4.4E-07 40.2 14.9 147 2-150 71-247 (248)
365 PF04841 Vps16_N: Vps16, N-ter 97.4 0.035 7.6E-07 42.2 17.8 63 2-66 35-108 (410)
366 COG3204 Uncharacterized protei 97.3 0.028 6E-07 40.0 15.4 154 1-155 91-265 (316)
367 cd00216 PQQ_DH Dehydrogenases 97.3 0.021 4.5E-07 44.4 14.2 149 7-158 61-269 (488)
368 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0011 2.3E-08 33.6 4.6 31 37-67 11-41 (47)
369 TIGR02604 Piru_Ver_Nterm putat 97.2 0.049 1.1E-06 40.7 14.7 138 1-142 19-202 (367)
370 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0018 3.8E-08 32.8 4.9 29 125-153 13-41 (47)
371 PF06433 Me-amine-dh_H: Methyl 97.0 0.074 1.6E-06 38.9 16.8 56 104-161 271-328 (342)
372 COG3386 Gluconolactonase [Carb 97.0 0.073 1.6E-06 38.8 14.5 145 3-154 32-194 (307)
373 COG5167 VID27 Protein involved 97.0 0.039 8.5E-07 42.4 12.3 143 6-154 478-633 (776)
374 KOG3630 Nuclear pore complex, 97.0 0.0044 9.6E-08 51.3 7.9 137 3-142 108-262 (1405)
375 KOG4499 Ca2+-binding protein R 97.0 0.057 1.2E-06 37.3 12.5 93 39-133 159-263 (310)
376 PF08553 VID27: VID27 cytoplas 97.0 0.015 3.2E-07 47.3 10.6 97 9-109 544-646 (794)
377 PF10647 Gmad1: Lipoprotein Lp 97.0 0.068 1.5E-06 37.8 14.7 139 2-144 30-186 (253)
378 PF15390 DUF4613: Domain of un 97.0 0.028 6.1E-07 43.7 11.5 117 36-154 55-187 (671)
379 cd00216 PQQ_DH Dehydrogenases 97.0 0.054 1.2E-06 42.2 13.4 106 9-121 303-435 (488)
380 PF12234 Rav1p_C: RAVE protein 96.9 0.082 1.8E-06 42.1 13.9 111 39-153 31-156 (631)
381 COG3490 Uncharacterized protei 96.9 0.087 1.9E-06 37.5 13.6 140 1-142 73-244 (366)
382 KOG2444 WD40 repeat protein [G 96.9 0.0059 1.3E-07 41.6 6.5 102 7-110 70-177 (238)
383 PHA02713 hypothetical protein; 96.9 0.056 1.2E-06 42.8 12.7 144 6-156 351-536 (557)
384 PF05694 SBP56: 56kDa selenium 96.8 0.065 1.4E-06 40.5 12.1 126 16-142 221-392 (461)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.14 3E-06 40.3 14.3 48 91-138 471-518 (527)
386 PF14870 PSII_BNR: Photosynthe 96.7 0.14 2.9E-06 37.3 15.5 142 3-150 152-301 (302)
387 PHA03098 kelch-like protein; P 96.7 0.16 3.5E-06 40.0 14.1 143 6-156 342-514 (534)
388 KOG2247 WD40 repeat-containing 96.6 0.00022 4.8E-09 53.5 -1.7 140 2-148 41-183 (615)
389 PF08596 Lgl_C: Lethal giant l 96.6 0.2 4.3E-06 37.9 16.2 151 6-158 96-295 (395)
390 PHA02713 hypothetical protein; 96.6 0.2 4.3E-06 39.8 14.0 141 6-154 303-489 (557)
391 PF10647 Gmad1: Lipoprotein Lp 96.5 0.16 3.5E-06 35.9 13.4 110 39-153 25-144 (253)
392 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.21 4.6E-06 37.2 14.4 140 1-142 189-346 (353)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.076 1.7E-06 40.2 10.7 87 33-121 303-409 (415)
394 PF06433 Me-amine-dh_H: Methyl 96.4 0.23 4.9E-06 36.5 16.2 150 2-156 42-216 (342)
395 PF10313 DUF2415: Uncharacteri 96.4 0.017 3.7E-07 28.5 4.5 30 125-154 2-34 (43)
396 PHA03098 kelch-like protein; P 96.3 0.37 8.1E-06 38.0 14.9 143 6-156 294-467 (534)
397 COG3204 Uncharacterized protei 96.3 0.21 4.6E-06 35.8 11.1 119 34-153 82-210 (316)
398 PF02897 Peptidase_S9_N: Proly 96.2 0.1 2.2E-06 39.6 10.3 112 40-155 126-262 (414)
399 KOG4441 Proteins containing BT 96.2 0.44 9.6E-06 38.0 13.9 144 6-156 332-502 (571)
400 COG4590 ABC-type uncharacteriz 96.1 0.075 1.6E-06 40.4 8.5 153 3-159 228-392 (733)
401 PF10168 Nup88: Nuclear pore c 96.0 0.6 1.3E-05 38.3 13.9 27 39-66 86-112 (717)
402 PRK10115 protease 2; Provision 95.9 0.75 1.6E-05 37.6 17.2 105 2-109 133-254 (686)
403 PF14727 PHTB1_N: PTHB1 N-term 95.9 0.55 1.2E-05 35.8 17.0 148 6-158 36-209 (418)
404 PF05694 SBP56: 56kDa selenium 95.9 0.56 1.2E-05 35.7 15.9 149 5-156 139-345 (461)
405 KOG4460 Nuclear pore complex, 95.7 0.36 7.8E-06 37.5 11.0 75 84-158 106-203 (741)
406 PF07569 Hira: TUP1-like enhan 95.7 0.23 5E-06 34.3 9.5 66 88-155 18-97 (219)
407 PF10313 DUF2415: Uncharacteri 95.6 0.081 1.8E-06 26.1 5.0 31 38-68 1-34 (43)
408 KOG1916 Nuclear protein, conta 95.6 0.05 1.1E-06 44.5 6.5 139 17-158 153-328 (1283)
409 PF14870 PSII_BNR: Photosynthe 95.5 0.63 1.4E-05 33.9 16.5 109 35-148 142-256 (302)
410 PF00780 CNH: CNH domain; Int 95.5 0.4 8.7E-06 34.1 10.5 102 47-155 5-124 (275)
411 KOG1900 Nuclear pore complex, 95.5 0.55 1.2E-05 40.3 12.0 136 14-154 96-273 (1311)
412 PF07569 Hira: TUP1-like enhan 95.5 0.16 3.5E-06 35.1 8.0 65 3-68 18-96 (219)
413 KOG2395 Protein involved in va 95.4 0.2 4.3E-06 38.8 8.6 95 11-109 398-499 (644)
414 KOG3630 Nuclear pore complex, 95.4 0.36 7.8E-06 40.9 10.6 151 2-155 48-230 (1405)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 0.23 5E-06 37.7 9.0 75 83-157 309-402 (415)
416 KOG2377 Uncharacterized conser 95.4 0.92 2E-05 34.8 12.6 145 6-153 32-185 (657)
417 PF05096 Glu_cyclase_2: Glutam 95.3 0.67 1.4E-05 32.9 14.9 115 39-158 46-162 (264)
418 PHA02790 Kelch-like protein; P 95.3 1.1 2.4E-05 35.0 14.3 139 6-155 318-472 (480)
419 PF14583 Pectate_lyase22: Olig 95.1 1 2.3E-05 33.8 12.8 121 18-143 169-302 (386)
420 PF08728 CRT10: CRT10; InterP 95.0 1.6 3.5E-05 35.6 16.3 142 7-153 49-246 (717)
421 TIGR02276 beta_rpt_yvtn 40-res 95.0 0.17 3.7E-06 24.4 5.3 31 5-35 1-32 (42)
422 PF02333 Phytase: Phytase; In 94.8 1.3 2.8E-05 33.4 18.0 145 5-154 66-238 (381)
423 PF12234 Rav1p_C: RAVE protein 94.7 1.4 3E-05 35.5 11.8 93 14-109 48-155 (631)
424 PF10168 Nup88: Nuclear pore c 94.6 0.65 1.4E-05 38.1 10.1 74 1-75 90-187 (717)
425 KOG1897 Damage-specific DNA bi 94.6 2.4 5.3E-05 35.6 13.6 131 19-153 752-898 (1096)
426 PF05096 Glu_cyclase_2: Glutam 94.4 1.3 2.8E-05 31.6 15.9 127 12-142 105-249 (264)
427 TIGR03074 PQQ_membr_DH membran 94.3 2.5 5.4E-05 35.1 12.8 109 7-118 194-352 (764)
428 KOG4441 Proteins containing BT 94.3 2.3 5E-05 34.1 13.7 142 7-156 285-455 (571)
429 KOG1916 Nuclear protein, conta 94.2 0.067 1.5E-06 43.9 3.8 144 5-154 193-375 (1283)
430 PF15390 DUF4613: Domain of un 94.0 1 2.2E-05 35.6 9.5 101 8-110 74-186 (671)
431 TIGR02276 beta_rpt_yvtn 40-res 93.7 0.38 8.1E-06 23.2 5.2 40 90-131 1-41 (42)
432 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.7 2.9 6.3E-05 33.2 16.3 148 8-157 121-337 (527)
433 PF11715 Nup160: Nucleoporin N 93.6 0.58 1.3E-05 37.1 8.1 71 47-117 156-255 (547)
434 PF14781 BBS2_N: Ciliary BBSom 93.5 1.2 2.5E-05 28.2 12.4 109 3-117 6-132 (136)
435 KOG4499 Ca2+-binding protein R 93.2 0.73 1.6E-05 32.1 6.9 46 2-47 218-263 (310)
436 PF12657 TFIIIC_delta: Transcr 93.2 0.87 1.9E-05 30.2 7.3 29 39-67 87-121 (173)
437 PF08728 CRT10: CRT10; InterP 92.9 2 4.4E-05 35.1 9.9 102 6-109 113-245 (717)
438 PRK13684 Ycf48-like protein; P 92.7 3.2 6.9E-05 30.8 14.7 144 2-151 179-329 (334)
439 PF07676 PD40: WD40-like Beta 92.6 0.59 1.3E-05 22.2 4.7 29 36-64 7-38 (39)
440 TIGR03074 PQQ_membr_DH membran 92.5 5.6 0.00012 33.2 16.4 152 6-159 259-483 (764)
441 TIGR02171 Fb_sc_TIGR02171 Fibr 92.3 1.7 3.6E-05 36.4 8.8 63 15-77 327-395 (912)
442 COG4257 Vgb Streptogramin lyas 92.1 3.4 7.3E-05 29.8 12.9 150 2-156 68-221 (353)
443 PF11715 Nup160: Nucleoporin N 91.8 1.6 3.6E-05 34.6 8.4 67 6-73 157-253 (547)
444 PF07995 GSDH: Glucose / Sorbo 91.7 4.2 9.2E-05 30.1 11.4 105 39-145 3-135 (331)
445 PF12657 TFIIIC_delta: Transcr 91.7 2.7 5.9E-05 27.8 9.0 30 125-154 87-122 (173)
446 PF05935 Arylsulfotrans: Aryls 91.6 5.6 0.00012 31.2 13.9 135 16-157 127-305 (477)
447 COG5167 VID27 Protein involved 91.5 0.93 2E-05 35.3 6.3 61 6-67 572-632 (776)
448 PF07995 GSDH: Glucose / Sorbo 91.4 4.6 9.9E-05 29.9 10.4 46 1-48 7-59 (331)
449 PF10214 Rrn6: RNA polymerase 91.4 7.7 0.00017 32.5 12.9 113 38-154 146-277 (765)
450 smart00564 PQQ beta-propeller 91.3 0.72 1.6E-05 20.8 3.8 24 9-32 8-31 (33)
451 COG5276 Uncharacterized conser 90.8 5 0.00011 29.2 16.7 142 7-156 96-244 (370)
452 PF04841 Vps16_N: Vps16, N-ter 90.6 6.4 0.00014 30.2 13.0 32 37-68 216-247 (410)
453 PF14761 HPS3_N: Hermansky-Pud 90.4 4.4 9.5E-05 27.9 10.5 105 50-157 29-167 (215)
454 PF08801 Nucleoporin_N: Nup133 90.2 7 0.00015 30.0 12.7 30 125-154 191-220 (422)
455 PLN00033 photosystem II stabil 90.0 7.2 0.00016 29.8 16.7 109 36-150 279-396 (398)
456 PF10214 Rrn6: RNA polymerase 89.9 10 0.00022 31.8 11.5 108 1-111 151-277 (765)
457 KOG1897 Damage-specific DNA bi 89.9 11 0.00025 32.0 15.0 141 7-153 787-942 (1096)
458 PHA02790 Kelch-like protein; P 89.9 8.2 0.00018 30.3 14.5 138 7-155 272-425 (480)
459 PF14761 HPS3_N: Hermansky-Pud 89.6 5.1 0.00011 27.6 15.6 49 8-57 29-79 (215)
460 TIGR03118 PEPCTERM_chp_1 conse 89.6 6.5 0.00014 28.8 16.7 67 1-67 28-118 (336)
461 KOG2377 Uncharacterized conser 89.5 4.3 9.4E-05 31.4 8.2 92 1-95 72-168 (657)
462 PF07250 Glyoxal_oxid_N: Glyox 89.4 5.9 0.00013 28.0 9.9 134 20-156 49-200 (243)
463 TIGR02604 Piru_Ver_Nterm putat 89.3 7.6 0.00017 29.2 12.2 102 38-142 14-142 (367)
464 PRK13684 Ycf48-like protein; P 89.3 7.4 0.00016 28.9 13.7 108 37-148 172-283 (334)
465 PF01011 PQQ: PQQ enzyme repea 88.3 1.7 3.8E-05 20.5 3.9 26 9-34 2-27 (38)
466 KOG2280 Vacuolar assembly/sort 88.0 14 0.0003 30.6 10.9 48 88-135 224-271 (829)
467 PF03088 Str_synth: Strictosid 87.7 3.4 7.3E-05 24.1 5.5 42 99-142 34-75 (89)
468 KOG1898 Splicing factor 3b, su 87.7 12 0.00027 32.1 10.2 105 2-109 940-1047(1205)
469 TIGR03548 mutarot_permut cycli 87.6 9.3 0.0002 28.1 15.2 64 48-113 123-197 (323)
470 COG1520 FOG: WD40-like repeat 87.5 10 0.00022 28.5 14.8 105 9-118 70-179 (370)
471 PLN02193 nitrile-specifier pro 87.1 13 0.00028 29.2 16.2 66 90-156 327-413 (470)
472 PF07250 Glyoxal_oxid_N: Glyox 86.7 9.1 0.0002 27.1 9.1 116 3-121 74-208 (243)
473 TIGR03606 non_repeat_PQQ dehyd 86.7 13 0.00029 29.0 11.5 49 1-49 35-90 (454)
474 TIGR02171 Fb_sc_TIGR02171 Fibr 85.8 10 0.00022 32.1 8.9 83 53-139 323-414 (912)
475 PF12768 Rax2: Cortical protei 84.6 13 0.00028 27.0 12.4 94 17-112 16-125 (281)
476 PF01436 NHL: NHL repeat; Int 83.6 2.7 5.9E-05 18.4 4.3 25 40-64 4-28 (28)
477 KOG4460 Nuclear pore complex, 83.4 21 0.00045 28.4 12.2 80 39-118 105-206 (741)
478 PF13449 Phytase-like: Esteras 82.7 17 0.00037 26.9 16.0 112 40-153 87-249 (326)
479 TIGR03547 muta_rot_YjhT mutatr 82.2 18 0.00039 26.8 14.2 40 17-57 168-209 (346)
480 PRK10115 protease 2; Provision 82.1 28 0.0006 28.9 18.8 147 1-151 177-342 (686)
481 PF14269 Arylsulfotran_2: Aryl 80.3 13 0.00029 27.1 7.1 67 84-151 146-218 (299)
482 TIGR03606 non_repeat_PQQ dehyd 80.2 26 0.00057 27.4 14.0 31 37-67 29-59 (454)
483 PF01731 Arylesterase: Arylest 79.6 9.8 0.00021 22.1 6.1 30 125-154 55-85 (86)
484 smart00036 CNH Domain found in 79.5 19 0.00041 26.4 7.7 63 91-157 12-77 (302)
485 PF03088 Str_synth: Strictosid 78.5 10 0.00022 22.1 4.9 48 16-64 36-84 (89)
486 PLN02153 epithiospecifier prot 78.5 25 0.00054 26.1 16.0 54 102-156 217-287 (341)
487 COG5308 NUP170 Nuclear pore co 78.4 42 0.00092 28.8 9.8 138 14-156 99-278 (1263)
488 KOG1983 Tomosyn and related SN 78.4 46 0.00099 29.1 11.1 26 132-157 243-268 (993)
489 PF13570 PQQ_3: PQQ-like domai 78.2 5.3 0.00011 19.0 3.2 21 134-154 20-40 (40)
490 KOG2247 WD40 repeat-containing 77.0 0.73 1.6E-05 35.6 -0.1 92 2-96 81-175 (615)
491 KOG3616 Selective LIM binding 76.1 12 0.00027 31.1 6.2 67 82-154 15-84 (1636)
492 smart00036 CNH Domain found in 75.4 29 0.00064 25.4 8.2 59 6-67 12-73 (302)
493 PF14779 BBS1: Ciliary BBSome 74.5 29 0.00062 24.9 7.3 56 8-64 196-255 (257)
494 PF05787 DUF839: Bacterial pro 73.0 12 0.00027 29.7 5.6 20 36-55 500-519 (524)
495 COG4257 Vgb Streptogramin lyas 73.0 34 0.00073 25.0 12.3 117 38-156 189-308 (353)
496 PF13449 Phytase-like: Esteras 72.9 36 0.00078 25.2 12.0 105 37-142 19-165 (326)
497 PF14781 BBS2_N: Ciliary BBSom 72.1 23 0.00049 22.6 11.6 106 44-154 5-126 (136)
498 PF10395 Utp8: Utp8 family; I 71.7 57 0.0012 27.0 13.7 150 2-156 136-308 (670)
499 PF05787 DUF839: Bacterial pro 70.3 19 0.00041 28.7 6.1 31 111-141 489-519 (524)
500 PF11635 Med16: Mediator compl 69.3 69 0.0015 27.1 13.6 66 83-148 261-345 (753)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=198.92 Aligned_cols=157 Identities=23% Similarity=0.205 Sum_probs=146.7
Q ss_pred Ceeecc--cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+.|+|. +..||+|+.||++++|++.+..++..+.+|..+|..++|+|+|++|.+++.|.+-++||+.+ +..+....+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEG 301 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEG 301 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcc
Confidence 468886 66899999999999999999999999999999999999999999999999999999999987 577777889
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...|.++ |+|||.++++|+.|..-+|||++++.++..+.+|.. +|.+++|+|+|-.|++|+.|++++|||++....
T Consensus 302 -Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 302 -HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred -cccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 99999999 899999999999999999999999999999999987 899999999999999999999999999998776
Q ss_pred CCC
Q 029743 158 GSG 160 (188)
Q Consensus 158 ~~~ 160 (188)
...
T Consensus 380 ly~ 382 (459)
T KOG0272|consen 380 LYT 382 (459)
T ss_pred cee
Confidence 443
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-33 Score=193.38 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=142.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|+|+.|++|+.|.++++||+.+..+..+.++|...|.+++|+|||+.|++|+.||+|++||..++++..+.+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 479999999999999999999999999999999999999999999999999999999999999999888888889999 9
Q ss_pred CCceeEE-ee-----cCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LK-----LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~-----~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...|+++ |. |..++|++++.||.|+|||+..+.++..+.+|.. +|+|+.|--+| +|++++.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence 9999999 64 5678999999999999999999999999999977 89999997554 889999999999999887
Q ss_pred cc
Q 029743 155 IL 156 (188)
Q Consensus 155 ~~ 156 (188)
+.
T Consensus 278 G~ 279 (480)
T KOG0271|consen 278 GK 279 (480)
T ss_pred hh
Confidence 54
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=197.73 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=150.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||..+++|+.|..-+|||+++ ++++..+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-c
Confidence 58999999999999999999999999998888889999999999999999999999999999999998 689999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..+|..+ |+|+|..+++|+.|++++|||++..+.+.++.+|.. -|+.+.|+| .|.+|++++.|++++||...+..+.
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 9999999 999999999999999999999999999999999987 899999998 7889999999999999999998876
Q ss_pred CCCC
Q 029743 159 SGNN 162 (188)
Q Consensus 159 ~~~~ 162 (188)
..+.
T Consensus 424 ksLa 427 (459)
T KOG0272|consen 424 KSLA 427 (459)
T ss_pred hhhc
Confidence 6554
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-32 Score=205.08 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=147.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
..|+|+.++|++++.|+++++|.+.+..++-..++|..+|+.+.|+|.|.++++++.|++.++|..+. ..+++.+.+ |
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifag-h 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAG-H 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcc-c
Confidence 36999999999999999999999999999888899999999999999999999999999999999986 688999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
-..+.|+ |+|+..|+++|+.|.+|++||+.+|..++.|.+|.+ +|.+++|+|+|++|++|+.|+.|++||+.++...
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 9999999 999999999999999999999999999999999977 9999999999999999999999999999986543
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-32 Score=203.41 Aligned_cols=155 Identities=24% Similarity=0.329 Sum_probs=147.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+|.|-++|+++.|++.++|......+++.+.+|-+.|.|+.|+|+..++++|+.|.++++||+.+ +..++.+.+ |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecC-C
Confidence 46999999999999999999999999999999999999999999999999999999999999999986 688999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.++|.++ |+|+|++|++|+.||.|.+||+.+++.+.++.+|.+ .|.++.|+.+|..|++++.|+.|++||+......
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999 899999999999999999999999999999999966 8999999999999999999999999999876654
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-31 Score=177.72 Aligned_cols=158 Identities=19% Similarity=0.248 Sum_probs=142.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|++|+.- +.+..++.. .
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~-~ 145 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHE-D 145 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEec-C
Confidence 4678999999999999999999999999999999999999999999999999999999999999986 455555544 3
Q ss_pred --CCceeEE-eecC--CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 --PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 --~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...|.|+ |+|+ ..++++++.|++|++||+++.+....+.+|.+ -++.++++|||..+++|+.||.+.+||++..
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 6789999 9987 78999999999999999999999999999987 7999999999999999999999999999988
Q ss_pred cCCCCCC
Q 029743 156 LKGSGNN 162 (188)
Q Consensus 156 ~~~~~~~ 162 (188)
+......
T Consensus 225 k~lysl~ 231 (315)
T KOG0279|consen 225 KNLYSLE 231 (315)
T ss_pred ceeEecc
Confidence 7654443
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9e-32 Score=187.55 Aligned_cols=185 Identities=19% Similarity=0.270 Sum_probs=147.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee-eeecccccceEEEEEEe-----CCCEEEEecCCCeEEEEEeCCc-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF----- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~----- 69 (188)
++|+|||+.||+|+.||+|++||.++|+.+ ..+.+|...|++++|.| ..++|++++.||.++|||+...
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 579999999999999999999999987654 56778988999999876 4467777777888888877532
Q ss_pred --------------------------------------------------------------------------------
Q 029743 70 -------------------------------------------------------------------------------- 69 (188)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (188)
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence
Q ss_pred ----------------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
.+++....+ |...|..+ |+||++++++++-|..|++|+.++|+.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 122223346 77778888 899999999999999999999999999
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCC-Ccc---ccccCCCCCCCCC--CCCCccccc
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-ISQ---AAESDSDGDDMDV--DNKGFPFWT 187 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~--~~~~~p~~~ 187 (188)
+..|++|-. +|+.++|+.|.+.|++++.|.++++|++++......++ |.+ .-+...|++...- .++.+.+|.
T Consensus 402 lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVA-AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccc-eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999976 89999999999999999999999999999998877776 544 2234444433322 345566664
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=190.29 Aligned_cols=157 Identities=25% Similarity=0.394 Sum_probs=144.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEc-CCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++|+|+++++++++.|.+|+|||+ ..+..++++.+|...|++++|+|+++.+++|+.|++|++||++. +.+...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 45688899999999999999999999999999999999999987 799999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeecccCCCc-ceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
|...+.++ |++++.++++++.|+.|++||+.++. ++..+..+... +++.+.|+|++.+++++..|+.+++||+...
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999 89999999999999999999999998 66777777553 5899999999999999999999999999977
Q ss_pred cCCC
Q 029743 156 LKGS 159 (188)
Q Consensus 156 ~~~~ 159 (188)
....
T Consensus 367 ~~~~ 370 (456)
T KOG0266|consen 367 KSVG 370 (456)
T ss_pred ccee
Confidence 5443
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.4e-30 Score=191.31 Aligned_cols=155 Identities=21% Similarity=0.360 Sum_probs=145.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+.|+|+|+++++++.++.+++|+..... .+..+.+|...|..++|+|+++++++++.|+++++||+...+..++++.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997766 66777899999999999999999999999999999999655688999999
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...++++ |+|+|+++++|+.|++|++||+++++++..+.+|.+ .|++++|++++.+|++++.|+.|++||+.+...
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99999999 899999999999999999999999999999999987 899999999999999999999999999999883
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=163.56 Aligned_cols=155 Identities=22% Similarity=0.295 Sum_probs=130.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
+.|..+|+++++|+.||+++|||++...+.+.++ |.++|+++..+|+...|+++..+|.|++||+...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 3578899999999999999999999977766665 7799999999999999999999999999999642
Q ss_pred -------------------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 70 -------------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 70 -------------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
-.++..++. |...+..+ +||++++|++++.|.+++||+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 011222334 55555555 899999999999999999999988
Q ss_pred C-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 112 N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 112 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
. +....+.+|.. .++..+|+.||++|++++.|+.+++|+++..+..
T Consensus 247 ~~kle~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 247 FFKLELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceeeEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 7 66677888865 8999999999999999999999999999987643
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=170.99 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=145.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+++.|-.+++++|+.|++++|||+.+|++..++.+|-..|..+++++--.++++++.|++|+.||+.. .+.++.+.+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~-nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY-NKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-hhhHHHhcc-c
Confidence 46789899999999999999999999999999999999999999999999999999999999999986 588888999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
-..|.|+ .+|.-..|++|+.|.++++||+++...+..+.+|.. +|..+.+.|....+++++.|++|++||+..+..
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt 311 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT 311 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCce
Confidence 9999999 799999999999999999999999999999999977 999999999888999999999999999987653
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=2e-28 Score=165.48 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=144.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
++|+|.|+++|+|+.|+...||++.+. +..+.+.+|.+.+.++.|-+ ..+|++++.|.+..+||+++ ++.++
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~-g~~~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET-GQQTQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc-ceEEE
Confidence 479999999999999999999999854 34567889999999999987 56789999999999999987 68889
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+.+ |.+.|.++ ++| +++.+++|+-|+..+|||++.+.++++|.+|.. .|++++|.|+|.-+++|+.|++.++||+
T Consensus 181 ~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 181 VFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEee
Confidence 9999 99999999 788 999999999999999999999999999999965 8999999999999999999999999999
Q ss_pred CCccCCCCCCC
Q 029743 153 DDILKGSGNNI 163 (188)
Q Consensus 153 ~~~~~~~~~~~ 163 (188)
+........++
T Consensus 259 RaD~~~a~ys~ 269 (343)
T KOG0286|consen 259 RADQELAVYSH 269 (343)
T ss_pred cCCcEEeeecc
Confidence 98766555543
No 13
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=174.12 Aligned_cols=162 Identities=18% Similarity=0.309 Sum_probs=146.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec--------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
.|||||++|++|+.||-|.+||..+|+..+.++ -+..+|.|+.|+.|..++++|+.||.|++|.+.+ +.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHH
Confidence 599999999999999999999999887655433 4678999999999999999999999999999987 7999
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
+.+...|...++|+ |+.|+..+++++.|.++++..+.+|+++..+.+|+. -|+...|.++|.++++++.||+|++|+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHG 377 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecC
Confidence 99984499999999 999999999999999999999999999999999987 6999999999999999999999999999
Q ss_pred CCccCCCCCCCcc
Q 029743 153 DDILKGSGNNISQ 165 (188)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (188)
++..+........
T Consensus 378 KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 378 KTTECLSTFKPLG 390 (508)
T ss_pred cchhhhhhccCCC
Confidence 9988766555433
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=167.44 Aligned_cols=162 Identities=16% Similarity=0.226 Sum_probs=147.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|-|.|.++++++.|.+|+.|++.++.++.++++|...|..+..+.||..+++++.|.++++|-+.+ +++...++. |
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~-h 276 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELRE-H 276 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhc-c
Confidence 35778999999999999999999999999999999999999999999999999999999999999986 678888888 8
Q ss_pred CCceeEE-eecC---------------CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 81 PNSVDAL-LKLD---------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 81 ~~~v~~~-~~~~---------------~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
..++.|+ |.|. ++++.+++.|++|++||+.++.++.++.+|.. .|.+++|+|-|++|+++..|
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecC
Confidence 8888888 5321 25899999999999999999999999999966 89999999999999999999
Q ss_pred CcEEEEeCCCccCCCCCCCcc
Q 029743 145 SMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~~~~ 165 (188)
+++++||+++.++....+..+
T Consensus 356 ktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred CcEEEEEeccceeeeccCCCc
Confidence 999999999998877665333
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=160.13 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=136.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--ccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~ 76 (188)
++|+|.|++|++|+.|.++.||.-..+ +++..+.+|...|.+++|+++|++|++++.|+.|.+|.+.. .-.+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999986654 67888999999999999999999999999999999999973 34677888
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecc---cCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
++ |...|..+ |+|...+|++++.|++|++|.-. ...+..++.+|.. .|++++|++.|..|++++.|++|+||..
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeee
Confidence 99 99999988 89999999999999999999865 3468899999976 8999999999999999999999999985
Q ss_pred C
Q 029743 153 D 153 (188)
Q Consensus 153 ~ 153 (188)
.
T Consensus 225 ~ 225 (312)
T KOG0645|consen 225 Y 225 (312)
T ss_pred c
Confidence 4
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=8.2e-28 Score=161.54 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=136.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++|+||.+.+++|+.|.+|++|+........... .+.+.|+|+.|+|+ ..+|++++.|+++++||+++ .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 5799999999999999999999987655444333 23789999999997 67899999999999999986 57778888
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+ |.+.++.+ ++|||.++++|+.||.+.+||++.++.+..+.+. . .|.+++|+|+.-.|+.+ .+..|+|||+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~-~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D-IVNSLCFSPNRYWLCAA-TATSIKIWDLESKA 265 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C-eEeeEEecCCceeEeec-cCCceEEEeccchh
Confidence 9 99999999 8999999999999999999999999999888766 4 79999999997666655 45569999999887
Q ss_pred CCCCCCCcc
Q 029743 157 KGSGNNISQ 165 (188)
Q Consensus 157 ~~~~~~~~~ 165 (188)
....+..+.
T Consensus 266 ~v~~l~~d~ 274 (315)
T KOG0279|consen 266 VVEELKLDG 274 (315)
T ss_pred hhhhccccc
Confidence 665554443
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=9.3e-28 Score=179.63 Aligned_cols=152 Identities=18% Similarity=0.295 Sum_probs=137.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+++||||+++|+|+.||+|+|||...+.+..++..|++.|+.+.|+..++.+++++-||+|+.||+.. .+..++++. .
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~-P 433 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTS-P 433 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecC-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577788875 3
Q ss_pred C-CceeEE-eecCCCEEEEecCCC-eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 P-NSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~-~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
. ....|+ ..|.|.++.+|+.|. .|.+|++++|+.+-.+.+|.+ ||.+++|+|.+..|++++.|.+|++||+-..
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEEEEEeecc
Confidence 2 334455 478899999998765 599999999999999999966 9999999999999999999999999998655
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=7.5e-28 Score=171.67 Aligned_cols=159 Identities=20% Similarity=0.291 Sum_probs=137.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
|+|+.+|..||+|+.||.++||+.. |..+.++..|.++|.++.|+..|++|++++.|+++.+||..++
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 5799999999999999999999954 6667788899999999999999999999999999999998432
Q ss_pred -----------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEec----------
Q 029743 70 -----------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI---------- 109 (188)
Q Consensus 70 -----------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~---------- 109 (188)
..+..++.+ |.+.|.++ |+|.|.+|++++.|++++||+.
T Consensus 320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 345556778 99999999 9999999999999999999985
Q ss_pred -----------------------------------------ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 110 -----------------------------------------LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 110 -----------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
..+.++.+|..|.. +|++++|+|+|+++++|+.||.|.
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeE
Confidence 22345667777866 999999999999999999999999
Q ss_pred EEeCCCccCCCCCC
Q 029743 149 LWDLDDILKGSGNN 162 (188)
Q Consensus 149 iwd~~~~~~~~~~~ 162 (188)
+|++++....+...
T Consensus 478 iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQ 491 (524)
T ss_pred eccccchheeEeec
Confidence 99999987665544
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=4.1e-29 Score=175.32 Aligned_cols=157 Identities=14% Similarity=0.228 Sum_probs=140.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
|.|++++.++++|+.+|.|++|+...... +.++.| ...|.+++|+|+...|++++.|++|+|||... ....+.+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-Cchhheecc-
Confidence 46899999999999999999999775543 455554 48999999999999999999999999999986 355567799
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|...+.++ |+|.-.++++|+.|+.|++||.++++++.++.+|+. .|..+.|++++++|++++.|..+++||+++++..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 99999999 999999999999999999999999999999999987 8999999999999999999999999999966544
Q ss_pred CCC
Q 029743 159 SGN 161 (188)
Q Consensus 159 ~~~ 161 (188)
...
T Consensus 300 ~~~ 302 (464)
T KOG0284|consen 300 FTY 302 (464)
T ss_pred HHh
Confidence 433
No 20
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.6e-27 Score=177.28 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=133.2
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|+| ++++|++|+.|++|++||+..+ .++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce
Confidence 47999 8899999999999999999764 3456778999999999999975 7999999999999999986 46
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe----CCCc
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----HDSM 146 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~ 146 (188)
.+..+.+ |...+.++ |+|+|.+|++++.|+.|++||+++++.+..+.+|.+..+..+.|.+++..+++++ .|+.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 6777888 88999999 8999999999999999999999999998888888653455778999888877654 4789
Q ss_pred EEEEeCCCcc
Q 029743 147 LKLWDLDDIL 156 (188)
Q Consensus 147 i~iwd~~~~~ 156 (188)
|++||+++..
T Consensus 239 VklWDlr~~~ 248 (493)
T PTZ00421 239 IMLWDTRKMA 248 (493)
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=4e-27 Score=159.30 Aligned_cols=149 Identities=17% Similarity=0.244 Sum_probs=135.5
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
|+++| +++.+++|+-|...++||++.+.+.+.|.+|...|+++.|.|+|.-|++|+.|++.++||++.. +.+..+..
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~ 270 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHD 270 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccC
Confidence 46788 9999999999999999999999999999999999999999999999999999999999999974 55555543
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
....+++++ |+..|++|++|..|..+.+||.-.++.+..+.+|.. +|+++..+|||.-+++|+.|.+++||.
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN-RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN-RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC-eeEEEEECCCCcEEEecchhHheeecC
Confidence 023568888 899999999999999999999999999999999966 899999999999999999999999994
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.6e-27 Score=174.86 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=144.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++++|+.+++|+|+.|.+.+||+++......++.+|...|+++.|+|..+.+++++.|++|+||.+.+ ..+++++.+ |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 47899999999999999999999999999999999999999999999999999999999999999987 699999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...|..+ |-.+|+.|++++.||.|++|++.++.|..++.+|.+ .|++++.++...++++|+.||.|.+|.=.+.
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9998888 889999999999999999999999999999999988 8999999999999999999999999975544
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=2.2e-27 Score=166.75 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=143.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|||+...+++++.||+|+|||....+....+.+|.-.|.+++|+|....|++++.|..|++||.++ +.++.++.+ |
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~-H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG-H 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh-c
Confidence 58999999999999999999999998888888899999999999999999999999999999999987 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+..|..+ |+|++++|++++.|..++++|+++.+.++.+++|.. .|+++.|+| ....|.+++.||.|..|.+....+.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEeccccccc
Confidence 9999999 999999999999999999999999889999999987 799999999 5567889999999999998844443
Q ss_pred C
Q 029743 159 S 159 (188)
Q Consensus 159 ~ 159 (188)
.
T Consensus 343 ~ 343 (464)
T KOG0284|consen 343 G 343 (464)
T ss_pred c
Confidence 3
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=152.19 Aligned_cols=149 Identities=15% Similarity=0.259 Sum_probs=133.6
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-ccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~ 85 (188)
.-+|++++.|.+|++|...+|.+.++++-..+.|..+...|+++.|++++.. .|++||++.... ++..+.+ |...|+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~-h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEG-HTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEec-cCCceE
Confidence 4578999999999999999999999999777899999999999999988865 799999987544 8889999 999999
Q ss_pred EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
++ |..+|+.+++|+.||+++|||++...+-+.+... . +|+++..+|+...|+++..+|.|++||+.......
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-s-pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-S-PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-C-CcceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence 99 9999999999999999999999997776666644 3 89999999999999999999999999999875443
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=150.91 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=133.0
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCC---ceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-cccccc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSD 74 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~ 74 (188)
++|+|- |..||+++.|..|++|+...+ .+...+. +|...|.+++|+|.|++|++++.|.++.||.-.. .-+++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478997 889999999999999998853 3333343 7999999999999999999999999999998643 237788
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC---eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
++.+ |...|.|+ |+++|.+|++++.|+.|.+|.+..+ ++...++.|.. .|..+.|+|....|++++.|++|++|
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEE
Confidence 8999 99999999 8999999999999999999998743 47788899987 89999999999999999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
.-.
T Consensus 178 ~~~ 180 (312)
T KOG0645|consen 178 RDE 180 (312)
T ss_pred eec
Confidence 876
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.6e-26 Score=168.33 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=143.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+|..-++++++.|-.|++||.+.+ .+.+++.+|...|.+++|+| |.+.+++++-|++|++|.+.. ..+..++++
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467898899999999999999999865 77889999999999999999 668999999999999999986 578889999
Q ss_pred ccCCceeEE-ee--cCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~--~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
|...|.|+ +- +|-.+|++|+.|.+|++||.++..|++++.+|.. .|+.+.|+|.-..+++|+.||+++||+..+-
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999 63 4667999999999999999999999999999987 8999999999999999999999999998887
Q ss_pred cCCCCC
Q 029743 156 LKGSGN 161 (188)
Q Consensus 156 ~~~~~~ 161 (188)
..+..+
T Consensus 260 ~lE~tL 265 (794)
T KOG0276|consen 260 KLEKTL 265 (794)
T ss_pred ehhhhh
Confidence 655543
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-26 Score=174.34 Aligned_cols=157 Identities=14% Similarity=0.277 Sum_probs=148.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|..-+++++-.+|.|++||.+.+.++..+..|.++|..++|+|++..+++|+.|..|++|+..+ .+++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999986 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
-..|+.+ |++.-..+++++.|.+|+||+.++++++..+++|.. -|.|..|+|....+++++.|.+|+|||+.......
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 9999999 799999999999999999999999999999999977 69999999999999999999999999998776544
Q ss_pred C
Q 029743 160 G 160 (188)
Q Consensus 160 ~ 160 (188)
.
T Consensus 172 ~ 172 (1202)
T KOG0292|consen 172 K 172 (1202)
T ss_pred C
Confidence 3
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=1.5e-26 Score=165.35 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=140.4
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+++|..+.+++.|+.+++||+++ ++++..+.
T Consensus 221 ~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET-G~~~~~f~-- 297 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET-GQVLSRFH-- 297 (503)
T ss_pred hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc-ceEEEEEe--
Confidence 4677 789999999999999999976 899999999999999999999999999999999999999987 67777776
Q ss_pred cCCceeEE-eecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
....++|+ |+|++ +.+++|+.|+.|+.||+++++.++.+..|-+ .|..+.|-++++++++.+.|+.++||+.+....
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence 46678888 99988 7899999999999999999999999988876 899999999999999999999999999987765
Q ss_pred CC
Q 029743 158 GS 159 (188)
Q Consensus 158 ~~ 159 (188)
..
T Consensus 377 ik 378 (503)
T KOG0282|consen 377 IK 378 (503)
T ss_pred ch
Confidence 44
No 29
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1e-24 Score=165.33 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=123.5
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCc--------eeeeecccccceEEEEEEeCCCE-EEEecCCCeEEEEEeCCcc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~ 70 (188)
++|+|+ +++|++|+.|++|+||++.++. ++..+.+|...|.+++|+|++.. |++++.|+.|++||++..
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 479996 7899999999999999997542 23456789999999999998875 578999999999999863
Q ss_pred cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE-----EEeeCCCCEEEEEeCC
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-----LALSHDRKFLGSISHD 144 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~d 144 (188)
.....+. +...+.++ |+|+|.+|++++.|+.|++||+++++.+.++.+|.+ .+.. ..|++++.+|++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444443 45678888 899999999999999999999999999989988865 3322 3355888999988876
Q ss_pred C----cEEEEeCCCc
Q 029743 145 S----MLKLWDLDDI 155 (188)
Q Consensus 145 ~----~i~iwd~~~~ 155 (188)
+ .|+|||+++.
T Consensus 236 ~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 236 KNNMREMKLWDLKNT 250 (568)
T ss_pred CCCccEEEEEECCCC
Confidence 4 7999999964
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=3.4e-25 Score=158.19 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=138.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC---------CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
|.|+|.|.+|++++.|++++||+.........+.+|...|..+.|+|.| ..+++++.|++|++||+.. +.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Cc
Confidence 4689999999999999999999998888888999999999999999975 3689999999999999986 68
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
++..+.. |..+|+++ |+|+|+++++|+.||.|.+|++++++..+.+.+. + .|..++|+.+|.+|..+-.|+.+.+-
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8999988 99999999 8999999999999999999999999999999877 4 59999999999999999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 986
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=153.99 Aligned_cols=148 Identities=16% Similarity=0.260 Sum_probs=137.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC---------------CCEEEEecCCCeEEEEEe
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---------------GRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~i~~~d~ 66 (188)
+.+.||.++|+++.|.+|++|-+.++++...+..|..+|.+++|.|. +.++.+++.|++|++||+
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 45679999999999999999999999998999999999999999874 248899999999999999
Q ss_pred CCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
.+ +.++.++.+ |...|+.+ |+|.|+||+++..|+++++||++++++...+..|.. -|+++.|+.+..++++|+.|.
T Consensus 322 ~t-g~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 322 ST-GMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred cC-CeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccc
Confidence 87 699999999 99999999 899999999999999999999999999999999976 699999999999999999999
Q ss_pred cEEEEeC
Q 029743 146 MLKLWDL 152 (188)
Q Consensus 146 ~i~iwd~ 152 (188)
.+++|.-
T Consensus 399 t~KvwEc 405 (406)
T KOG0295|consen 399 TVKVWEC 405 (406)
T ss_pred eeeeeec
Confidence 9999974
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=151.19 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=135.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|+|+|.+|++|+.|..|.+|++.. .+-...+++|.++|..+.|.+++..+++++.|.+++.||+++ ++..+.+++
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-GKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-ceeeehhcc-
Confidence 36999999999999999999999654 345567789999999999999999999999999999999987 688888888
Q ss_pred cCCceeEEe-ecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~~-~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...+..+. ...| .++.+++.|+++++||+++..+++++... ++++++.|..++..+.+|+-|+.|++||+++...
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 988888884 3334 46778899999999999999999888655 3799999999999999999999999999987665
Q ss_pred CCC
Q 029743 158 GSG 160 (188)
Q Consensus 158 ~~~ 160 (188)
...
T Consensus 209 ~~~ 211 (338)
T KOG0265|consen 209 LYT 211 (338)
T ss_pred eEE
Confidence 443
No 33
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.3e-24 Score=163.51 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=126.1
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCcee-------------eeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~ 68 (188)
.++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++|++||+..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 3456666676666666666665433211 13568999999999999 889999999999999999965
Q ss_pred cc------cccceeeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEE
Q 029743 69 FK------DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 69 ~~------~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.+ .++..+.+ |...|.++ |+|++ .+|++++.|+.|++||+++++.+..+.+|.. .|.+++|+|++.+|++
T Consensus 108 ~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLat 185 (493)
T PTZ00421 108 EGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCT 185 (493)
T ss_pred CccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEE
Confidence 32 34567888 99999999 89975 6999999999999999999999889988876 8999999999999999
Q ss_pred EeCCCcEEEEeCCCccC
Q 029743 141 ISHDSMLKLWDLDDILK 157 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (188)
++.|+.|++||+++...
T Consensus 186 gs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTI 202 (493)
T ss_pred ecCCCEEEEEECCCCcE
Confidence 99999999999987653
No 34
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-25 Score=169.76 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=129.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC--------------------------------C---------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~--------------------------------~--------------------- 27 (188)
|.||+||+|||+|+.|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 46999999999999999999998754 0
Q ss_pred -------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eec-CCCEEEEe
Q 029743 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITG 98 (188)
Q Consensus 28 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~ 98 (188)
++++.+.+|.+.|..+.|+. .++|++++.|.+|+||++.. ..++..|. |...|+|+ |+| |.+|+++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~-~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGR-KECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCC-cceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 02225568999999999997 46889999999999999975 68888887 89999999 898 88999999
Q ss_pred cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 99 ~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+.|+.|+||++...+.+.-...+ + -|++++|.|||+..+.|+.+|..++|++....
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 99999999999877665544444 5 79999999999999999999999999988765
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=9.3e-25 Score=151.63 Aligned_cols=159 Identities=13% Similarity=0.158 Sum_probs=139.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.+|+.+++++|+.|..-++|++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|++|+..++ .....+.. .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQ-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeec-c
Confidence 357899999999999999999999999999999999999999999999999999999999999999874 44444433 2
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...+.=+ |+|.+..|++|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++..||+|++|++.+..+..
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 3334444 799999999999999999999999888889999965 89999999999999999999999999999987766
Q ss_pred CCC
Q 029743 160 GNN 162 (188)
Q Consensus 160 ~~~ 162 (188)
...
T Consensus 227 ~~~ 229 (399)
T KOG0296|consen 227 KIT 229 (399)
T ss_pred Eec
Confidence 554
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=9.8e-26 Score=156.26 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=118.4
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC----------------------------------
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---------------------------------- 48 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------- 48 (188)
..-+.+.+++|+.|.+|+|||+++++++.++..|...|..+.|+..
T Consensus 243 Lqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 243 LQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred eeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 3446678899999999999999999887777667666666665432
Q ss_pred -------CCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 49 -------GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 49 -------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
.+++++++.|.+|++|++.+ .+.++++.+ |...+.|+ -..|+++++|+.|.+|++||+..|.+++.+++|
T Consensus 323 VNvVdfd~kyIVsASgDRTikvW~~st-~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 323 VNVVDFDDKYIVSASGDRTIKVWSTST-CEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred eeeeccccceEEEecCCceEEEEeccc-eeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 34666666677777777655 577777888 87777776 335789999999999999999999999999999
Q ss_pred CCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 122 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+ -|.++.| |.+.+++|+.||+|++||+.....
T Consensus 400 Ee-LvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 400 EE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred HH-hhhheee--cCceeeeccccceEEEEecccccC
Confidence 76 7999999 567899999999999999987653
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3.3e-25 Score=165.52 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=137.5
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce-----ee----eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV-----QT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~-----~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
..+|++++.|.++++|++...+. .. +...|...|++++.+|+.+.++||+.|.+.++|++++ ...+.++.
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLs 502 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLS 502 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEee
Confidence 35789999999999999976211 11 2237999999999999999999999999999999985 68889999
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+ |+..+.++ |+|..+.+++++.|++|+||.+.+..|+.++.+|.. .|..+.|-.++++|++++.||.|++|++++..
T Consensus 503 G-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 503 G-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred C-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 9 99999999 999999999999999999999999999999999976 89999999999999999999999999999998
Q ss_pred CCCCCC
Q 029743 157 KGSGNN 162 (188)
Q Consensus 157 ~~~~~~ 162 (188)
+...+.
T Consensus 581 C~~tlD 586 (775)
T KOG0319|consen 581 CEMTLD 586 (775)
T ss_pred hhhhhh
Confidence 776543
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=145.11 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=131.1
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++|+++ .+.+++++.||.+++||... ..++..++.|...|.++.|++ .++.+++++.|++|++|+... +..++++.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-PNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-CcceEeec
Confidence 468874 56688889999999999754 467888999999999999998 567788899999999999875 68888999
Q ss_pred eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+ |...|... |+| .++++++++.|+.+++||++.......+..|.. .+.++.|+. +...|++++.|+.|++||+++
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-EILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-eeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 9 99999998 888 678999999999999999986544445888864 799999987 667889999999999999998
Q ss_pred cc
Q 029743 155 IL 156 (188)
Q Consensus 155 ~~ 156 (188)
..
T Consensus 223 ~r 224 (311)
T KOG0277|consen 223 LR 224 (311)
T ss_pred cc
Confidence 65
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.5e-25 Score=161.45 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=144.0
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
|-+..+++++|+.|..|+||+..+++.+..+.+|...|.+++.+|...++++++.|-.|++||.+..-.+.+++.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 4456789999999999999999999999999999999999999999999999999999999999877788999999 999
Q ss_pred ceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC--CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 83 SVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 83 ~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.|.++ |+| |.+.+++++.|++|++|.+.+..+..++.+|.. .|+++.+-+ |.++|++|+.|.+|+|||.++..+.
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 99999 888 678999999999999999999999999999976 799999987 4579999999999999999988754
Q ss_pred CCC
Q 029743 159 SGN 161 (188)
Q Consensus 159 ~~~ 161 (188)
..+
T Consensus 221 ~TL 223 (794)
T KOG0276|consen 221 QTL 223 (794)
T ss_pred HHh
Confidence 443
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=6.1e-25 Score=164.63 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=143.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.+||||++|+.+-.|++++||-+.+-+....+.+|.-||.|+..+||++.++||+.|.+|++|-++- +.|-+.+.. |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF-GDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF-GDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc-chhhhhhhc-c
Confidence 46899999999999999999999999888888899999999999999999999999999999999975 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...|.++ |-|....+++++.|+.|+.||-...+.++.+.+|.. .|++++.+|+|.++++++.|..|++|.-..
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999 999999999999999999999999999999999976 899999999999999999999999998765
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=2e-24 Score=146.71 Aligned_cols=154 Identities=22% Similarity=0.301 Sum_probs=137.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|.+|++.+++++.|.+++.||+++|+.++.+++|..-|.++.-+.-| .++.+++.|+++++||++. +..++++.
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~-- 172 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE-- 172 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhccc--
Confidence 4688999999999999999999999999999999999999999844444 5677899999999999996 67777775
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.+..++++ |..++..+.+|+-|+.|++||++.+..+..+.+|.+ +|+.+..+++|.++.+-+.|.++++||++...+.
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 45678888 888999999999999999999999999999999988 9999999999999999999999999999976543
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=2.5e-23 Score=146.70 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=137.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.++.+++|++..++....+..|...+..+.|+|+++.+++++.++.+++|++.. +.....+.. +
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 47899999999999999999999998887788888999999999999999999999999999999975 466677777 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
...+.++ ++++++++++++.++.|.+||+++++....+..|.. .+.+++|+|++.++++++.++.|++||+++....
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 170 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence 8889999 889888898888899999999998888888887765 7999999999888888888999999999865543
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-24 Score=141.73 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=127.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+-+|+|.++++.|.+|++|++..+.++++..+|...|..++.+.|...|++++.|..+.+||+.+ ++..+.+.+ |
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rg-H 100 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT-GKVDRRFRG-H 100 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc-Ceeeeeccc-c
Confidence 35888999999999999999999999999999999999999999999999999999999999999987 688999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEeccc--CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...|..+ |+.+...+++|+-|..+++||.++ .++++.+....+ .|.++..+ +..+++|+.||+++.||++.+..
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEec--ccEEEeeccCCcEEEEEeeccee
Confidence 9999999 899999999999999999999986 446666654444 45555553 44556666666666666665543
No 44
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2e-23 Score=158.35 Aligned_cols=143 Identities=8% Similarity=0.051 Sum_probs=120.6
Q ss_pred EeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCccc-------ccceeeeccCCce
Q 029743 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (188)
Q Consensus 13 ~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~v 84 (188)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..... ++..+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 345678899988777777888899999999999996 78999999999999999975322 2345678 88999
Q ss_pred eEE-eecCCCE-EEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 85 DAL-LKLDEDR-VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 85 ~~~-~~~~~~~-l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.++ |+|++.. +++++.|+.|++||+++++....+..+ . .|.+++|+|+|.+|++++.|+.|+|||+++....
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 999 8998875 568899999999999998877777533 4 7999999999999999999999999999987543
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.9e-25 Score=155.06 Aligned_cols=153 Identities=15% Similarity=0.299 Sum_probs=124.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------- 69 (188)
+.||||.++|++++.+..+.+||+.+|......+ ++...+.+++|.|||..+++|+.|+++..||++..
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 4799999999999999999999999998877665 45678999999999999999999999999988532
Q ss_pred ------------------------------------------------------------------------ccccceee
Q 029743 70 ------------------------------------------------------------------------KDCSDRFV 77 (188)
Q Consensus 70 ------------------------------------------------------------------------~~~~~~~~ 77 (188)
...++.+.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 00111112
Q ss_pred eccCCc---eeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNS---VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~---v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (188)
+ |+.. |+++| -.+..++++|+.|+.|+||+..+++++..+.+|.. .|++++|+|.. .++|+++.||+|+||..
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 3 3322 33444 34567899999999999999999999999999987 89999999955 57899999999999988
Q ss_pred CCc
Q 029743 153 DDI 155 (188)
Q Consensus 153 ~~~ 155 (188)
...
T Consensus 513 ~~~ 515 (519)
T KOG0293|consen 513 SDN 515 (519)
T ss_pred Ccc
Confidence 754
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=150.43 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=143.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+++|+-.-||++++.|+.|+-||++..+.++...+|-+.|.+++.+|.-+.|++|+.|.++++||+++ +..+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 47888889999999999999999999999999999999999999999999999999999999999997 688889999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
..+|..+ +.|....+++|+.|++|++||++.|+...++..|.. .|.+++.+|....+++++.| .|+.|++..+....
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ 354 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhh
Confidence 9999999 788888999999999999999999999999998876 89999999999899988877 58999998876554
Q ss_pred C
Q 029743 160 G 160 (188)
Q Consensus 160 ~ 160 (188)
.
T Consensus 355 n 355 (460)
T KOG0285|consen 355 N 355 (460)
T ss_pred c
Confidence 4
No 47
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9e-25 Score=164.03 Aligned_cols=149 Identities=21% Similarity=0.346 Sum_probs=131.1
Q ss_pred ccCeEEEEeCCCcEEEEEcCC---CceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+.++||+++..|.|.+||+.. .+.+..+..|...++++.|++ ...+|++|+.||.|++||++. .....++.+ ..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t~~~-nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKSTFRS-NS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccccccccc-cc
Confidence 467899999999999999986 455567889999999999998 457899999999999999986 466667777 88
Q ss_pred CceeEE-eec-CCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 82 NSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 82 ~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..|+.+ |+| .+.+++++...|.+++||++. .++..++.+|.+ +|.++.|+|++.+||+|+.|++|+|||..+...
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 899999 887 678999999999999999985 557888999977 999999999999999999999999999986543
No 48
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=6.7e-24 Score=150.43 Aligned_cols=162 Identities=19% Similarity=0.265 Sum_probs=141.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-cc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~ 80 (188)
.|+|+...+++++.|..|+||..........+..|..+|+.+..+|.|.+|++++.|+.....|++.+ ..+..... ..
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g-~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG-SQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC-cEEEEEeeccc
Confidence 57889999999999999999999887777788899999999999999999999999999999999874 44444332 01
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.-.+++. |+|||..+.+|..|+.|++||+.++..+..|.+|.+ +|..++|+.+|-+|++++.|+.|++||+++.....
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 2346677 899999999999999999999999999999999976 99999999999999999999999999999988776
Q ss_pred CCCCcc
Q 029743 160 GNNISQ 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
.+..++
T Consensus 426 t~~l~~ 431 (506)
T KOG0289|consen 426 TIQLDE 431 (506)
T ss_pred eeeccc
Confidence 665544
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.4e-24 Score=142.76 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=130.3
Q ss_pred eec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 3 ~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|++ +.+.+++++.|++|++|+...++.++++.+|...|...+|+| .++.+++++.|+.+++||++..+..+. +.. |
T Consensus 112 wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a-h 189 (311)
T KOG0277|consen 112 WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA-H 189 (311)
T ss_pred cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-c
Confidence 444 456678889999999999999999999999999999999999 678999999999999999998655554 666 8
Q ss_pred CCceeEE-ee-cCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCcc
Q 029743 81 PNSVDAL-LK-LDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~-~~-~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (188)
...+.|+ |+ -+...+++|+.|+.|+.||+++ ..++..+.+| +..|+.+.|+|.. ..|++++.|-+++|||.....
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 8888888 85 4788999999999999999997 4578889999 5589999999954 578999999999999998554
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=3.5e-23 Score=145.94 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=138.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+|+++++++++.++.|++|++..++.+..+..|...+.++.|+++++++++++.++.+.+|++.. ......+.. |
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~-~ 134 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG-H 134 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc-C
Confidence 46889999999999999999999998878888888888999999999988999888899999999975 466666777 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...+.++ ++|++.++++++.++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||++......
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 8889999 899999999988899999999998888888888755 79999999999999999999999999998755443
Q ss_pred C
Q 029743 160 G 160 (188)
Q Consensus 160 ~ 160 (188)
.
T Consensus 214 ~ 214 (289)
T cd00200 214 T 214 (289)
T ss_pred c
Confidence 3
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=3.4e-24 Score=143.19 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=133.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeee--ecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc--------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF-------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-------- 69 (188)
++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|.| +...+++++.|.+|++||++..
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~ 105 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET 105 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec
Confidence 57899999999999999999999987655443 347888899999987 5678899999999999998753
Q ss_pred -------------------------------------------------------------------------cccccee
Q 029743 70 -------------------------------------------------------------------------KDCSDRF 76 (188)
Q Consensus 70 -------------------------------------------------------------------------~~~~~~~ 76 (188)
-++++.+
T Consensus 106 ~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 106 KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 1223334
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+. |.....|+ |+|+|+++++|+.|..+.+||++.--|.+.+..+ +.+|..+.|+.+|++|+++++|..|-|=+++++
T Consensus 186 ~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 186 KA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-cCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 45 77677777 8999999999999999999999988899999888 569999999999999999999999999888887
Q ss_pred cCCCCCC
Q 029743 156 LKGSGNN 162 (188)
Q Consensus 156 ~~~~~~~ 162 (188)
.....++
T Consensus 264 d~~~eI~ 270 (313)
T KOG1407|consen 264 DRVWEIP 270 (313)
T ss_pred CeEEEee
Confidence 7554443
No 52
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=3.6e-23 Score=149.83 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=137.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+.|||||.++++++.|+++.+||-.+++.+..+. +|.+.|.++.|+||+..+++++.|.++++||+.+ ..+++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4799999999999999999999999999998887 8999999999999999999999999999999986 46666654
Q ss_pred ecc----CCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 78 GLS----PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 78 ~~~----~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
- . ...+.|+|. ...|++.+.+|.|.+++.....++..+.+|.. .|+++..++++++|++++.||.|.-|++.
T Consensus 275 ~-~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 275 M-GSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred c-CCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 2 2 234556665 66899999999999999999999999999977 89999999999999999999999999999
Q ss_pred CccCCCC
Q 029743 154 DILKGSG 160 (188)
Q Consensus 154 ~~~~~~~ 160 (188)
++...+.
T Consensus 351 ~g~~~~~ 357 (603)
T KOG0318|consen 351 SGTSDRL 357 (603)
T ss_pred Ccccccc
Confidence 8876544
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=5.6e-23 Score=164.21 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=128.4
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+|+| ++++|++++.|++|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|+.|++||++. +..+..+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5665 478899999999999999999998889999999999999997 789999999999999999986 466666654
Q ss_pred cCCceeEE-e-ecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~-~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+ ..+.++ | +++|.++++|+.|+.|++||+++.. ++..+.+|.. .|.++.|. ++.+|++++.|+.|++||+...
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 4 567777 6 4679999999999999999998765 5667778866 89999997 6789999999999999999753
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=1.9e-23 Score=151.26 Aligned_cols=158 Identities=15% Similarity=0.236 Sum_probs=123.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCC----CeEEEEEeCCc------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYF------ 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~------ 69 (188)
.|||.|-|+|+|...|+|+|||....+ +..+++...++|..+.|+++++.|++.++. |.+.+||-.+.
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 589999999999999999999986532 223455566778888888887766654432 23445543211
Q ss_pred ----------------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
-+....+.. |...|.|+ |+|||.++++.+.||++.+||-.+++.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 111122334 77889999 999999999999999999999999999
Q ss_pred eeecc---cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 115 IQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 115 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
+..+. +|.+ .|++++|+||++.+++++.|.+++|||+.+.......
T Consensus 225 vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 225 VGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred EEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 99887 8876 8999999999999999999999999999987654433
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-23 Score=160.44 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=140.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|..-++++|+.|-+|+||+..+.+++.++.+|-..|..+.|++.-.+|++++.|.+|+||+..+ +.++..+++ |
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~iavltG-H 134 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCIAVLTG-H 134 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceEEEEec-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999976 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCe----------------------------------------------
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---------------------------------------------- 113 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~---------------------------------------------- 113 (188)
...|.|. |+|....+++++.|.+|++||+..-+
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 9999999 99999999999999999999983100
Q ss_pred ---------------------------eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCCC
Q 029743 114 ---------------------------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI 163 (188)
Q Consensus 114 ---------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (188)
.+-+..+|.+ .|+++.|+|....+++.+.|+.|+|||+.+.+.....+.
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence 0112235655 799999999999999999999999999998876665543
No 56
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=2.6e-23 Score=147.74 Aligned_cols=158 Identities=17% Similarity=0.240 Sum_probs=130.2
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCC-cc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY-FK 70 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-~~ 70 (188)
|+|++. .-.|++++.|++|.+||+... .+...+.+|...|..++|++ +...|++++.|+.+.|||++. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 457773 446889999999999999743 23445678999999999999 557888999999999999995 23
Q ss_pred cccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCc
Q 029743 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSM 146 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 146 (188)
.+...... |...+.|+ |+| ++..||+|+.|++|.+||+|+ ..++.++.+|.+ .|..+.|+|.. ..|++++.|+.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 45555667 99999999 887 677899999999999999997 457888999977 89999999954 57789999999
Q ss_pred EEEEeCCCccCCCC
Q 029743 147 LKLWDLDDILKGSG 160 (188)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (188)
+.|||+..-...+.
T Consensus 341 l~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQS 354 (422)
T ss_pred EEEEeccccccccC
Confidence 99999987655543
No 57
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.5e-24 Score=160.32 Aligned_cols=154 Identities=18% Similarity=0.319 Sum_probs=131.8
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|++ ..++|++|+.||.|++||++...-..++.+....|..++|+| .+..|+++...|.+++||++...++...+..
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A- 218 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA- 218 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-
Confidence 4665 567899999999999999998887778888888999999999 6789999999999999999998889999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE-EEEEe--CCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~ 155 (188)
|.+++.|+ |+|++.+||+|+.|+.|+||+..+.+......-+..++|..+.|.|..++ |++++ .|-.|+|||++..
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999 99999999999999999999998655443333344568999999998765 55554 6889999999876
Q ss_pred c
Q 029743 156 L 156 (188)
Q Consensus 156 ~ 156 (188)
-
T Consensus 299 Y 299 (839)
T KOG0269|consen 299 Y 299 (839)
T ss_pred c
Confidence 4
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=4.8e-23 Score=143.19 Aligned_cols=150 Identities=16% Similarity=0.245 Sum_probs=131.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------- 70 (188)
|.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|+..+..
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 5799999999999999999999999977778999999999999999999999999999999999986530
Q ss_pred --------------------------------------------------------------------------------
Q 029743 71 -------------------------------------------------------------------------------- 70 (188)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (188)
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence
Q ss_pred ----cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 71 ----DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
..++..-. |...|..+ |-+ ..+|++++.+|.|++||.++|+++.++.+|.. .|.+++++|+.+++++++.|+
T Consensus 314 D~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 314 DLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCC
Confidence 01111112 56667777 666 67899999999999999999999999999976 899999999999999999999
Q ss_pred cEEEEeCC
Q 029743 146 MLKLWDLD 153 (188)
Q Consensus 146 ~i~iwd~~ 153 (188)
+.+||+..
T Consensus 391 ~a~VF~v~ 398 (399)
T KOG0296|consen 391 TALVFEVP 398 (399)
T ss_pred eEEEEecC
Confidence 99999875
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=143.26 Aligned_cols=154 Identities=16% Similarity=0.257 Sum_probs=129.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC------------C------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEE
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK------------N------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (188)
+|||||.++++|+.|..|+|+|++. + -.++++..|...|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999861 1 235667789999999999999999999999999999
Q ss_pred EEeCCc--ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec---ccCCCcceeEEEeeCCCCE
Q 029743 64 YSWGYF--KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 64 ~d~~~~--~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 137 (188)
||+... ++..+.++ ...+++++ |+|.|.+|++|.....+++||+.+.++...- .+|.+ .|+++.+++.++.
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 999642 12333344 46789999 9999999999999999999999998876443 45655 7999999999999
Q ss_pred EEEEeCCCcEEEEeCCCccCC
Q 029743 138 LGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.++++.||.|++||--+..+.
T Consensus 276 YvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred EEEeccCCcEEeeccccHHHH
Confidence 999999999999996655443
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=154.18 Aligned_cols=156 Identities=15% Similarity=0.251 Sum_probs=139.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc-cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|+++|++|++|..+|.|.|||....+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 46899999999999999999999998888888887 99999999997 778999999999999999986666666888
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEe--CCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSIS--HDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~ 155 (188)
|...|..+ |++++.++++|+.|+.+.|||.....+...+..|.. .|..++|+| ....||+|+ .|+.|++||..++
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999 999999999999999999999988888999999966 899999999 456778776 7999999999987
Q ss_pred cCCCC
Q 029743 156 LKGSG 160 (188)
Q Consensus 156 ~~~~~ 160 (188)
.....
T Consensus 379 ~~i~~ 383 (484)
T KOG0305|consen 379 ARIDS 383 (484)
T ss_pred cEecc
Confidence 65443
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=1.8e-22 Score=161.40 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=130.3
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+.++.|++ ++.+|++|+.|+.|++||++.....+..+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7899999999999999999998888777744 6799999964 7899999999999999999864445667778
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEeccc------CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
|...+.++ |. ++.++++++.|+.|++||++. ..++..+.+|.. .+..++|+|++.+|++++.|+.|++|+
T Consensus 660 -h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 660 -HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred -CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 99999999 65 788999999999999999974 356778888865 789999999999999999999999999
Q ss_pred CCCc
Q 029743 152 LDDI 155 (188)
Q Consensus 152 ~~~~ 155 (188)
....
T Consensus 737 ~~~~ 740 (793)
T PLN00181 737 KAFP 740 (793)
T ss_pred CCCC
Confidence 7654
No 62
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.8e-25 Score=163.73 Aligned_cols=154 Identities=22% Similarity=0.344 Sum_probs=143.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|++...+|++|+.+|+|++||++..+.++.+.+|...+..+.|+|.+.+++.++.|..+++||.+. ..+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46888889999999999999999999999999999999999999999999999999999999999985 588888999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+.++ |+|+|++++.++.|..++|||+..|+.+..|..|.+ .+..+.|+|..-.+++|+.|++|++||+++...
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 9999999 899999999999999999999999999999999976 899999999998899999999999999996543
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.2e-23 Score=146.24 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=126.1
Q ss_pred eeecccC-eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|+|+++ .+++|+.|+.+++||+.+......+.+|.+.|.+.+|+|. +..+++|+.||.|++||.+.....+..+.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--
Confidence 4788554 5677788889999999998876688899999999999994 56889999999999999987545555554
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|..+|..+ +-|.|..+++++.. .|++||+-+|. .+..+..|.. .|+|+++..++..|++++-|+.|++||+.+.+.
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 88999999 78999999988765 69999998655 4444444766 899999999999999999999999999777653
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.6e-23 Score=160.90 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=136.9
Q ss_pred CeeecccCeEEEEe--CCCcEEEEEcCC------------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe
Q 029743 1 MTFAADAMKLLGTS--GDGTLSVCNLRK------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~--~d~~i~i~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 66 (188)
++.+|+|..+++|+ .|+.++||+... .+.+.....|.+.|.|+.|+|||++||+|+.|+.|.+|..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 36789999999999 899999998652 1234455679999999999999999999999999999998
Q ss_pred CC------cc-----------cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE
Q 029743 67 GY------FK-----------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (188)
Q Consensus 67 ~~------~~-----------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~ 128 (188)
.. .+ .....+.+ |...|..+ |+|++.++++++.|++|.+|+.++.+.+..+.+|.. .|..
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKG 176 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKG 176 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc-cccc
Confidence 62 11 24556788 99999999 899999999999999999999999999999999977 8999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 129 LALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+.|.|-|++|++-+.|++|+||++.+......
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred eEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence 99999999999999999999999877544433
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.5e-23 Score=146.22 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=132.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+.||++|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|+.+..+.+||+.+ +.+...+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcc
Confidence 469999999999999999999988653 34677889999999999999999999999999999999987 56666554
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
..+...+.++ |.|||..+++|+.|+.+..||+. |+.+....+-..-.|.+++..+||+++++...|..|++|+.++..
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3134555555 89999999999999999999986 555555555433369999999999999999999999999999877
Q ss_pred CCCCC
Q 029743 157 KGSGN 161 (188)
Q Consensus 157 ~~~~~ 161 (188)
.+...
T Consensus 388 dr~li 392 (519)
T KOG0293|consen 388 DRGLI 392 (519)
T ss_pred hhccc
Confidence 66443
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=153.55 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=135.4
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
..-+.+|++|+.|.++++||+.+|.+...+.+|.+.+.++... ...+++|+.|.+|++|++.+ +..+..+.+ |..+
T Consensus 258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~-h~~~ 333 (537)
T KOG0274|consen 258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN-GACLNLLRG-HTGP 333 (537)
T ss_pred ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccC-cceEEEecc-cccc
Confidence 3347889999999999999999999999999999999998874 55788899999999999986 689999999 9999
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc-cCCCCC
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI-LKGSGN 161 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~ 161 (188)
|.++ .+ +.++++|+.|++|++||+.+++++..+.+|.. .|+++.+.+. ..+++|+.|+.|++||+++. .....+
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 9999 55 88999999999999999999999999999977 8999988654 88999999999999999999 555444
Q ss_pred CC
Q 029743 162 NI 163 (188)
Q Consensus 162 ~~ 163 (188)
.+
T Consensus 410 ~~ 411 (537)
T KOG0274|consen 410 QG 411 (537)
T ss_pred cC
Confidence 43
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.3e-23 Score=147.90 Aligned_cols=151 Identities=17% Similarity=0.259 Sum_probs=128.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|-.||++|++|+..|.|+|||..+...++.+.+|+.++..+.|+|++ ..|++|+.|+.+++||+.+. .....+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecC-C
Confidence 577899999999999999999977766778889999999999999955 67788999999999999864 44446788 9
Q ss_pred CCceeEE-eec-CCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+..|+|. ++| ++..+++|+.||.|++||++.. ..+..+. | +.+|..+.+-|.|..+++++ .+.|++||+-++..
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 9999999 777 5568999999999999999976 6666665 4 34999999999999998886 56899999986543
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=3e-22 Score=133.45 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=126.6
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
|....+.+++.+.|++|++||.+++..++.+. ...+|+++..+++|++|.++. .+.|..||.... ..++.+. -..
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k--~P~ 225 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYK--MPC 225 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeecc--Ccc
Confidence 55566788888999999999999999998887 567899999999999876654 458999998763 4454444 334
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.|.+. .+|+...+++|+.|..++.||..+++.+..+ .+|.+ +|.++.|+|+|...++|+.||+|++|.+...+...
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 55666 6899999999999999999999999988886 78866 99999999999999999999999999988766543
No 69
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=3.4e-23 Score=144.65 Aligned_cols=153 Identities=12% Similarity=0.175 Sum_probs=123.8
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCce---eeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
|+|||- ...|++|.--+.|++|...++.- ...+.+|...|..++|+|.. ..|++|+.|++|+|||++........
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 578882 33477777778999999887632 23455799999999999955 68899999999999999975333333
Q ss_pred e-eeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc---CeeeeecccCCCcceeEEEeeCC-CCEEEEEeCCCcEEE
Q 029743 76 F-VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLKL 149 (188)
Q Consensus 76 ~-~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i 149 (188)
+ +. |...|..+ |+....+|++|+.||+++|||++. ++++.++..|.. +|+++.|+|. ...|++++.|.+|.+
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEE
Confidence 3 45 88899999 888777999999999999999985 568889999976 9999999995 456788889999999
Q ss_pred EeCCCc
Q 029743 150 WDLDDI 155 (188)
Q Consensus 150 wd~~~~ 155 (188)
||+.-.
T Consensus 375 WDlsvE 380 (440)
T KOG0302|consen 375 WDLSVE 380 (440)
T ss_pred EEeecc
Confidence 999753
No 70
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.6e-22 Score=143.80 Aligned_cols=153 Identities=14% Similarity=0.250 Sum_probs=128.8
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcC--CCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+| +..++++++.|+.+.|||.+ +.++.....+|.+.|.|++|+| ++..||+|+.|++|.+||+++-..++..+
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 35666 45678889999999999999 4566667789999999999999 66788999999999999999877889999
Q ss_pred eeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccC--------------eeeeecccCCCcceeEEEeeCCCCEE-E
Q 029743 77 VGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN--------------RIIQPIAEHSEYPIESLALSHDRKFL-G 139 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l-~ 139 (188)
.+ |...|.++ |+|. ...|++++.|+.+.+||+..- +++..-.+|.. .|..+.|+|+..++ +
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 99999999 9994 568889999999999998531 13455567765 89999999988764 6
Q ss_pred EEeCCCcEEEEeCCCc
Q 029743 140 SISHDSMLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (188)
+.+.|+.+.||.....
T Consensus 391 SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAEN 406 (422)
T ss_pred EecCCceEEEeecccc
Confidence 8889999999998754
No 71
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=1.2e-23 Score=146.01 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=121.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC---
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN--- 82 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--- 82 (188)
|...+++|..|++|+|||..+..+...+.+|.+.|.|+.| +.+.+++|+.|.+|++||+++ ++++.++.. |..
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t-ge~l~tlih-HceaVL 281 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT-GEPLNTLIH-HCEAVL 281 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC-CchhhHHhh-hcceeE
Confidence 5667899999999999999999999999999999999999 567999999999999999987 566655443 333
Q ss_pred ----------------------------------------ceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCC
Q 029743 83 ----------------------------------------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (188)
Q Consensus 83 ----------------------------------------~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~ 122 (188)
.|..+ .-+.+++++++.|.+|++|++.+++.++++.+|.
T Consensus 282 hlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV-dfd~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 282 HLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred EEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee-ccccceEEEecCCceEEEEeccceeeehhhhccc
Confidence 33333 1234688888999999999999999999999996
Q ss_pred CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCC
Q 029743 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 123 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
. .|-|+.+ .++++++|+.|.+|++||++.+.....++
T Consensus 361 R-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 361 R-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred c-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 5 5777666 68899999999999999999887655443
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=2.9e-23 Score=142.16 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=132.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce---
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--- 75 (188)
+.|+|....|++|+.|++|++||+......+.++ ....+|.++.|+|.|.+|++|..-..+++||+.+. ++...
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanP 256 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANP 256 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCc
Confidence 5799999999999999999999997643322222 24568999999999999999999999999999863 33222
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
-.. |.+.|+++ +++.|++.++++.||.|++||--+++|+.++ .+|.+..|.+..|..+++++++.+.|..+++|.+.
T Consensus 257 d~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 257 DDQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 134 78899999 8999999999999999999998889999887 45666689999999999999999999999999999
Q ss_pred CccCC
Q 029743 154 DILKG 158 (188)
Q Consensus 154 ~~~~~ 158 (188)
++...
T Consensus 336 t~R~l 340 (430)
T KOG0640|consen 336 TGRML 340 (430)
T ss_pred CCceE
Confidence 87643
No 73
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-22 Score=144.39 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=132.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--------ccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--------~~~~~ 73 (188)
+-+|+|.+|+.|+..+.|++|.+.+|.++..+.+|-..|+++.|+-||.+|++|+.||.|.+|.+-. ...++
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 4578999999998999999999999999999999999999999999999999999999999998731 23556
Q ss_pred ceeeeccCCceeEE-ee--cCCCEEEEecCCCeEEEEecccCee------------------------------------
Q 029743 74 DRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRI------------------------------------ 114 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~--~~~~~l~~~~~d~~v~~~d~~~~~~------------------------------------ 114 (188)
..+.. |+-+|+.+ .. +...++++++.|.++++||+..+..
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 67788 99999999 43 3557899999999999999855432
Q ss_pred ---------------------eeecccCCC-cceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 115 ---------------------IQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 115 ---------------------~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
+..+.+|.+ .+|+|++++-||..|++|+.||.|.|||+.+.+.....
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 122334533 37999999999999999999999999999887654433
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=3.8e-22 Score=133.92 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=133.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----- 75 (188)
+.|+.+|.+|++++.|.+..||-..+|+.+.+..+|.+.|+++...-+.+.+++|+.|.++++||+.++ .++..
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKTNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeecCC
Confidence 357889999999999999999998899999999999999999999999999999999999999999864 22111
Q ss_pred ------------------------------------------------eeeccCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 76 ------------------------------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 76 ------------------------------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
+.. +...++.+ |.|-+++|++|..+|.|.+
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEE
Confidence 112 33445555 8999999999999999999
Q ss_pred EecccCee-eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 107 VGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 107 ~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
||++++.. +.....|.. .|+.|.++++..++++++.|.+-++||..+.......
T Consensus 174 ~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred EEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 99999854 444566755 8999999999999999999999999999988765443
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.7e-22 Score=132.59 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=134.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-cccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~ 80 (188)
+.+.|...+++++.|..+.+||+.+|+..+.+.+|.+.|+.+.|+.....+++|+.|.++++||.+. ..++++.+.. .
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a 144 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-A 144 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-h
Confidence 3456778899999999999999999999999999999999999999999999999999999999975 2367777776 6
Q ss_pred CCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...|.++ .-.+..+++|+.||+++.||++.|....-+-+| +|++++|+++++.++.++.|+++++.|-.+++...
T Consensus 145 ~D~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 145 KDGVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred cCceeEE-EecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 6667766 224567999999999999999999988777766 89999999999999999999999999998876443
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=2.7e-22 Score=140.20 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=126.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC-------------------------CceeeeecccccceEEEEEEeCCCEEEEec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (188)
+..++|..+++|+.|..|.||+... +.++..+.+|..+|.++.|++ ...+++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4568999999999999999999321 123446779999999999998 77899999
Q ss_pred CCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe---eeeecccCCCcceeEEEee
Q 029743 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALS 132 (188)
Q Consensus 57 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~v~~~~~~ 132 (188)
.|.+|+.||+..+ .....+.+ .....++ .+|..++|++|+.|..+++||.+++. ..+++.+|.. .|.++.|+
T Consensus 279 wDHTIk~WDletg-~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLETG-GLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS 354 (423)
T ss_pred ccceEEEEEeecc-cceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC
Confidence 9999999999874 55555554 4567888 79999999999999999999999754 5678899977 89999999
Q ss_pred CCC-CEEEEEeCCCcEEEEeCCCcc
Q 029743 133 HDR-KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 133 ~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|.. .+|++++.|+++++||+++..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC
Confidence 955 567899999999999999876
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.1e-21 Score=147.57 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=145.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+|++..+.|++|-..|...+|.+..-.+++.+.-...+|..+.|+..|.+|+.|+.. |++.+|+... ...+...++ |
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-EsYVlKQQg-H 349 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-ESYVLKQQG-H 349 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-cceeeeccc-c
Confidence 578888999999999999999999999998888777899999999999999988765 8999999976 466777788 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
-..+.++ ++|||+++++|+.||+|+|||.+++-|..++..|.. .|+.+.|+..++.|++.+.||+|+.||+.......
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 9999999 899999999999999999999999999999999977 79999999999999999999999999999887666
Q ss_pred CCCCcc
Q 029743 160 GNNISQ 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
....++
T Consensus 429 Tft~P~ 434 (893)
T KOG0291|consen 429 TFTSPE 434 (893)
T ss_pred eecCCC
Confidence 554444
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=149.90 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=135.6
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCC--ceeeeecccccceEEEEE-EeCCCEEEEecCCCeEEEEEeCCccc-ccc----
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~---- 74 (188)
...+++.|++++.|.+|++|+...+ -+..++..|...|.|++. .++...+++|+-|+.|.+||+..... .+.
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 3457889999999999999999876 567778899999999999 77889999999999999999985321 111
Q ss_pred ----eee-eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 75 ----RFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 75 ----~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.+. + +...++++ .++.|..+++|+..+.+++||.++++.+..+.+|.+ .|..+..++||+.+++++.||+|+
T Consensus 161 ~t~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 161 VTVNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEE
Confidence 122 6 77788998 588999999999999999999999999999999988 799999999999999999999999
Q ss_pred EEeCCCccCCCCC
Q 029743 149 LWDLDDILKGSGN 161 (188)
Q Consensus 149 iwd~~~~~~~~~~ 161 (188)
+||+.........
T Consensus 239 lWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 239 LWDLGQQRCLATY 251 (735)
T ss_pred eeeccccceeeeE
Confidence 9999988765543
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6.2e-22 Score=134.83 Aligned_cols=150 Identities=12% Similarity=0.166 Sum_probs=123.9
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCC-Ccee-eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|+||| ...++++++.|++|++|+++. |... +....|.++|.+++|+.+|..+++|+.|+++++||+.. .....+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S--~Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS--GQVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC--CCeeeee
Confidence 58999 555666889999999999986 3332 34457999999999999999999999999999999986 3555666
Q ss_pred eccCCceeEE-eec--CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~~--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
- |..++.++ |-+ ....|++|+.|++|+.||++...++.++.-+ + .++++.. ...+++++..++.|.+|++++
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-e-RvYa~Dv--~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-E-RVYAADV--LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-c-eeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence 6 99999999 633 4568999999999999999999999888776 4 6877765 456788888999999999977
Q ss_pred ccC
Q 029743 155 ILK 157 (188)
Q Consensus 155 ~~~ 157 (188)
...
T Consensus 186 ~~t 188 (347)
T KOG0647|consen 186 PPT 188 (347)
T ss_pred Ccc
Confidence 653
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=8.6e-23 Score=146.34 Aligned_cols=149 Identities=15% Similarity=0.302 Sum_probs=126.3
Q ss_pred Ceeeccc-CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc---------
Q 029743 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------- 70 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------- 70 (188)
+.|.|++ +.+++|+.|+.|+.||+++++.++....|-+.|..+.|-++|+.+++++.|+++++|+.+.+-
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh
Confidence 3578887 788999999999999999999999888999999999999999999999999999999986430
Q ss_pred ------------------------------------cccceeeeccCC--ceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 71 ------------------------------------DCSDRFVGLSPN--SVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 71 ------------------------------------~~~~~~~~~~~~--~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
...+.+.+ |.. ....+ |||||.+|++|..+|.+.+||-++
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 00111233 432 23344 899999999999999999999999
Q ss_pred CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEe
Q 029743 112 NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 112 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (188)
-+.+..+.+|.+ ++..+.|+|.. ..+|+++.||.|++|+
T Consensus 464 ~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999966 89999999954 5789999999999996
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=3e-22 Score=142.81 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=136.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.||||++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+.+++|+++. ...+.++.+ |
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyG-H 285 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYG-H 285 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhC-C
Confidence 47899999999999999999999999999999999999999999999889999999999999999986 578888999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...|..+ +...++.+.+|+.|+++++|++.. +....+.++.+ .+-|++|-. ...+++|+.+|.|.+|++.+..+..
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCcee
Confidence 9999999 777788888888999999999943 33445677755 799999975 4678899999999999999887654
Q ss_pred CC
Q 029743 160 GN 161 (188)
Q Consensus 160 ~~ 161 (188)
..
T Consensus 363 ~~ 364 (479)
T KOG0299|consen 363 TS 364 (479)
T ss_pred Ee
Confidence 43
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.6e-22 Score=145.28 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=131.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEe--cCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCG--SQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|.|++|++++|+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+| +.|+.|++||..+ +..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc
Confidence 57999999999999999999999988888888899999999999999 56778875 4589999999986 56666555
Q ss_pred eccCCceeEE-eecCCCEEEEe--cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITG--SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~--~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
....|..+ |++..+-++++ ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++++.|.++++|++-.
T Consensus 386 --tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 --TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred --cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 46788999 89988666554 3577899999999999999999977 899999999999999999999999999987
Q ss_pred c
Q 029743 155 I 155 (188)
Q Consensus 155 ~ 155 (188)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 5
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=7.8e-22 Score=132.45 Aligned_cols=150 Identities=21% Similarity=0.312 Sum_probs=120.9
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceee---------------------------------------------------
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT--------------------------------------------------- 31 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--------------------------------------------------- 31 (188)
.+.+.+.+++|+.|.++++||+++|+.+.
T Consensus 60 id~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 60 IDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred ecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 34566778888888888888888776433
Q ss_pred --eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEe
Q 029743 32 --RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (188)
Q Consensus 32 --~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d 108 (188)
.++.+.+.++.+-|.|-++.|++|..+|.|.+||++++.+.+...+. |...|..+ ++|+..++++++.|.+-++||
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeee
Confidence 23334556778889998999999999999999999986677777777 88999999 899999999999999999999
Q ss_pred cccCeee-------------------------------------------------------eecccCCCcceeEEEeeC
Q 029743 109 ILPNRII-------------------------------------------------------QPIAEHSEYPIESLALSH 133 (188)
Q Consensus 109 ~~~~~~~-------------------------------------------------------~~~~~~~~~~v~~~~~~~ 133 (188)
.++-+.+ ..+++|-+ +|++++|+|
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhP 297 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHP 297 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECC
Confidence 8544322 22346765 999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 029743 134 DRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+|+..++|+.||.|++.....
T Consensus 298 dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCcccccCCCCceEEEEEecc
Confidence 999999999999999986553
No 84
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=133.61 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=128.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee--
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (188)
+.||+.|.+||.|..+|.|.|||+.+-..-+.+.+|..+|.+++|+++|+.|++++.|..|.+||+..+ .+++.+.-
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 469999999999999999999999998888889999999999999999999999999999999999753 33333210
Q ss_pred --------------------------------cc-----------CCceeEE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 79 --------------------------------LS-----------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 79 --------------------------------~~-----------~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
.| .....+. |.+.|+++++|...|.+.+++..+.++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 00 0001112 567789999999999999999999998
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+..++...-..|..+.++..|++|+..+.|..|+.|+++....
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 8877665523799999999999999999999999999985443
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=2.6e-21 Score=137.45 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=130.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +..+..|.+
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 4678999999999999999999999988766553 234589999999999999999999999999986 568888999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
|.++|..+ |+.+|.+|++++.|+.|++||+|.-+...++.-.....+.++.|.+.|.+|+.++.+=+|++++-.+
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 99999999 9999999999999999999999987776666555444699999999999999998887777777443
No 86
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=140.16 Aligned_cols=155 Identities=15% Similarity=0.284 Sum_probs=140.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.||.|...||+|+.||.|++|.+.+|.+++.+. .|...|+++.|+.|+..+.+++.|.++++--+.. +.+++.+.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcC-
Confidence 4689999999999999999999999999999987 8999999999999999999999999999999986 799999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC-CcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|...+... |.++|.++++++.||+|++|+..+.+|+.++.... +.+|.++..-| +-..++++...++|+|-++....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999998 99999999999999999999999999998886432 45788888877 44678889999999999988654
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 427 V 427 (508)
T KOG0275|consen 427 V 427 (508)
T ss_pred E
Confidence 3
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=7.9e-22 Score=137.87 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=128.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--cccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~ 79 (188)
.|++ ...+++++.|.+|++||+.++.....+.+ ...+.++..+|..++|++|+.|..+++||.+++. ...+.+.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 4555 66889999999999999999988877764 5689999999999999999999999999998643 34566889
Q ss_pred cCCceeEE-eecC-CCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
|...|.++ ++|. ...|++++.|+++++||+|+.+ ++..+.+|.+ .|.++.|. ++..+++|+.|++|+|+.-..
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999999 8985 4578899999999999999877 9999999977 89999998 466899999999999987543
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=8.9e-22 Score=142.55 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=122.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee------------eecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT------------RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~ 67 (188)
+.||+.|..|++.+.....+|+|-...+... .-++|...+++.+|+|.. ..+++++.||++++|++.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 4789999999988888999999965432221 234799999999999955 678999999999999998
Q ss_pred Ccccccceeeec----cCCceeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeec-ccCCC-cceeEEEeeCCCCEE
Q 029743 68 YFKDCSDRFVGL----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPI-AEHSE-YPIESLALSHDRKFL 138 (188)
Q Consensus 68 ~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~-~~~~~-~~v~~~~~~~~~~~l 138 (188)
..+..++.+... ..-+++.+ |+|+|+.+++|+.||.|.+|+..+.. +...+ .+|.. ..|+++.|+++|++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 766666666531 12235555 89999999999999999999975432 22222 34432 269999999999999
Q ss_pred EEEeCCCcEEEEeCCCccC
Q 029743 139 GSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (188)
++-+.|+++++||++....
T Consensus 380 lSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred hhccCCCceeeeecccccc
Confidence 9999999999999997653
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.2e-21 Score=146.86 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=123.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
|.||.+ ++|++++.|.+|++|.+...++++.|. |...|+|++|+| |.++|++|+-|+.++||++.. ..+.....
T Consensus 375 lSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~D- 449 (712)
T KOG0283|consen 375 LSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWND- 449 (712)
T ss_pred cccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehh-
Confidence 457765 589999999999999999999999987 999999999999 889999999999999999964 44444544
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc--cC-----CCcceeEEEeeCCC-CEEEEEeCCCcEEEE
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EH-----SEYPIESLALSHDR-KFLGSISHDSMLKLW 150 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~-----~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw 150 (188)
-...|+++ |.|+|++.+.|+.+|.+++|+....+...... .+ .+..|+++.|.|.. ..+++.+.|..|+||
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence 55789999 89999999999999999999987665443321 11 11269999999743 457788899999999
Q ss_pred eCCCcc
Q 029743 151 DLDDIL 156 (188)
Q Consensus 151 d~~~~~ 156 (188)
|++...
T Consensus 530 d~~~~~ 535 (712)
T KOG0283|consen 530 DGRDKD 535 (712)
T ss_pred eccchh
Confidence 996544
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4e-21 Score=131.62 Aligned_cols=148 Identities=14% Similarity=0.282 Sum_probs=125.9
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC--EEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
-++.++++|+.|.+|+|||++....+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+.... .++..+++ |..
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~ 128 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKG 128 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-ccc
Confidence 3689999999999999999999888888888999999999998764 8999999999999999875 88889999 999
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccC-------------------------------------------------
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN------------------------------------------------- 112 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~------------------------------------------------- 112 (188)
.|+.+ .+|.|++.++.+.|+.+++||+-.|
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP 208 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc
Confidence 99999 7999999999999999999998221
Q ss_pred -------------------------------eeeeecccCCCcceeEEEe--eCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 113 -------------------------------RIIQPIAEHSEYPIESLAL--SHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 113 -------------------------------~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+...+.+|.. +|.++.+ .|++.+|++++.||.|+|||++..
T Consensus 209 ~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 209 KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 12333446654 7888874 356789999999999999999876
No 91
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.6e-22 Score=139.71 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=136.5
Q ss_pred eeecc-cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|+|- ...|++++.|+.|.+||++.+.+++.+. ..-....|+|+|.+-.+++++.|..++.||++.-..++....+ |
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-h 271 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-H 271 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-c
Confidence 57774 4557788899999999999988877665 3456689999998888999999999999999987788999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...+..+ |+|.|+-+++|+.|.+|+||..+.+.....+....-..|.++.|+.|.+++++|+.|+.|++|...-.....
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999 999999999999999999999988776555433322379999999999999999999999999988776666
Q ss_pred CCCCcc
Q 029743 160 GNNISQ 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
.+...|
T Consensus 352 v~t~rE 357 (433)
T KOG0268|consen 352 VITPRE 357 (433)
T ss_pred CCChhH
Confidence 555444
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=5e-21 Score=128.19 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=129.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+|+-++.+++.....|.|.|.....-+++..+++|+....||.|+|+|++|++|+.|..+.+||++. --+++.+.. +.
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR-ld 231 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR-LD 231 (313)
T ss_pred eecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc-cc
Confidence 5666666666666679999999999999999999999999999999999999999999999999975 578888888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---------CcEEEEe
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---------SMLKLWD 151 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd 151 (188)
-+|+.+ |+.+|++|++++.|..|-|=++++|..+..++.. + +...++|+|....|+-++.| |.|++|-
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence 999999 9999999999999999999999999999988755 3 78999999999999877644 4566665
Q ss_pred CC
Q 029743 152 LD 153 (188)
Q Consensus 152 ~~ 153 (188)
+.
T Consensus 310 ~~ 311 (313)
T KOG1407|consen 310 LS 311 (313)
T ss_pred CC
Confidence 43
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-20 Score=128.07 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=128.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-ccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~ 79 (188)
|+.+|-+..+++++.|++|++||++..++...+.. ..-..++|.|.|-++|++.....|++||++.. +.+..++.-.
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 46789889999999999999999998777666543 23346789999999999998889999999863 4555555430
Q ss_pred --cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc--ceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 80 --SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 80 --~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.......+ |+|+|++++.++..+.+++.|.-.|....++..+... ---+.+|.||++++++++.||+|.+|++++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 24567788 9999999999999999999999999988888766531 124678999999999999999999999988
Q ss_pred ccCCCCC
Q 029743 155 ILKGSGN 161 (188)
Q Consensus 155 ~~~~~~~ 161 (188)
+......
T Consensus 264 g~~v~~~ 270 (311)
T KOG1446|consen 264 GKKVAVL 270 (311)
T ss_pred CcEeeEe
Confidence 7654443
No 94
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=4.8e-21 Score=144.05 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=136.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----cccc----
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCS---- 73 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~---- 73 (188)
.|-|.+++++.|...|.+.+||+.+...+..+++|.+.+++++.+||++.+++++.|.+|++||+... +...
T Consensus 419 ~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 47788999999999999999999998888888999999999999999999999999999999998421 1111
Q ss_pred ----ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
+++. -...+.|+ +||||++|+++-.|++|++|-+.+-+....+.+|.- ||.++..+||++.+++|+.|..|+
T Consensus 499 l~~~rtLe--l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 499 LKHTRTLE--LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eccceEEe--ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccCCcCeEEeccCCCceE
Confidence 1122 35678899 899999999999999999999999999999999976 999999999999999999999999
Q ss_pred EEeCCCccCCCC
Q 029743 149 LWDLDDILKGSG 160 (188)
Q Consensus 149 iwd~~~~~~~~~ 160 (188)
+|-+.-+.+...
T Consensus 576 iWGLdFGDCHKS 587 (888)
T KOG0306|consen 576 IWGLDFGDCHKS 587 (888)
T ss_pred Eeccccchhhhh
Confidence 999998876543
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.2e-21 Score=141.78 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=134.1
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCc--ee--------eeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNT--VQ--------TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~--~~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
-++..++|+|+.|+.|.+||+.++. .+ ..+. ++...|.+++.++.|..|++|+..+.+++||.++ ...
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccc
Confidence 4577889999999999999999762 22 2233 7888999999999999999999999999999987 566
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+..+++ |+..|+++ .++||+.+++++.||+|++||+...+|+.++..|.+ .|+++..+|+=.++++|+.|+.|+.=|
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecc
Confidence 777889 99999999 699999999999999999999999999999999988 699999999999999999999999999
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+++..
T Consensus 284 l~n~~ 288 (735)
T KOG0308|consen 284 LRNPA 288 (735)
T ss_pred cCCch
Confidence 99853
No 96
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=3.3e-21 Score=145.83 Aligned_cols=153 Identities=24% Similarity=0.306 Sum_probs=134.6
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
+-....+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++|+.|+.|++||+.+ .+++..+.+ |...
T Consensus 298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~g-H~~~ 373 (537)
T KOG0274|consen 298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSG-HTGR 373 (537)
T ss_pred EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecC-Ccce
Confidence 3345667888999999999999999999999999999999996 88999999999999999986 799999999 9999
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
|.++ +.+. .++++|+.|+.|++||+++. +++.++.+|.. -+..+.+ .+++|++++.|++|++||.+........
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeee
Confidence 9998 4444 89999999999999999999 99999999965 5655554 6789999999999999999998877666
Q ss_pred CCc
Q 029743 162 NIS 164 (188)
Q Consensus 162 ~~~ 164 (188)
+..
T Consensus 450 ~~~ 452 (537)
T KOG0274|consen 450 EGR 452 (537)
T ss_pred ccC
Confidence 553
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.5e-20 Score=126.33 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=134.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|.|+++|.+|++++.|..+++||..++..++++..+...+..++|......++.++. |.+|+..++.. .+.++.+.|
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEEEcCC
Confidence 579999999999999999999999999999999888888999999888888877777 78999999976 689999999
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...|..+ .+|-+..+++++.|++|++||++..++...+..... + .++|.|.|-++|++.....|++||++....
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-P--IAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-c--ceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 99999999 799999999999999999999998887766654422 3 478999999999888777999999998754
Q ss_pred CC
Q 029743 158 GS 159 (188)
Q Consensus 158 ~~ 159 (188)
.+
T Consensus 175 gP 176 (311)
T KOG1446|consen 175 GP 176 (311)
T ss_pred CC
Confidence 44
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=143.87 Aligned_cols=153 Identities=11% Similarity=0.171 Sum_probs=130.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~- 79 (188)
++|+-+|+++|.|+.|-.|++.+..+......+.+|.++|.++.|+|++++|++.+.||+|++|++.. +.+..++.+.
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCC
Confidence 46888999999999999999999999888889999999999999999999999999999999999975 4555544320
Q ss_pred -----c-CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-cceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 80 -----S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 80 -----~-~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
. ...+..+ |+|+|..++..+.++.|++|+...++....+..... ..+..+.|+|+|+|||+++.+|.|.|||
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1 1223344 899999999999999999999999988877754322 2488999999999999999999999999
Q ss_pred CCC
Q 029743 152 LDD 154 (188)
Q Consensus 152 ~~~ 154 (188)
.++
T Consensus 261 v~t 263 (933)
T KOG1274|consen 261 VDT 263 (933)
T ss_pred ccc
Confidence 996
No 99
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.6e-22 Score=147.99 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=140.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
.++.+++|+.+..+.+|.+.....+..+.+|..+|.++.|++....|++|+.+|+|++||+.. ...++++.+ |...+.
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg-h~~~~~ 116 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG-HLLNIT 116 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-cccCcc
Confidence 357789999999999999988777778899999999999999999999999999999999986 678889999 999999
Q ss_pred EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCC
Q 029743 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
.+ |+|-+.+.+.|+.|+.+.+||++...|...+.+|.. .|..+.|+|+|++++.++.|..++|||+..+......+
T Consensus 117 sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 117 SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred eeeeccceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 99 999999999999999999999998889999999876 79999999999999999999999999998776655444
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1.3e-21 Score=141.55 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=137.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.+.|||+.|++|+.-.++.|||+....+ ...+........+++.+||.+..+++..||.|.|||+.+ ...++.+++
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqG- 549 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQG- 549 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-ceeeecccC-
Confidence 3679999999999999999999986543 334444445678999999999999999999999999986 688999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|...+.|+ .+++|..|.+|+.|++|+-||+++++.+.+.... . +|.++..+|++.+|+.|-..+.+.|-........
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-S-QIfSLg~cP~~dWlavGMens~vevlh~skp~ky 627 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-S-QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY 627 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-h-hheecccCCCccceeeecccCcEEEEecCCccce
Confidence 99999999 8999999999999999999999999887766544 3 7999999999999999999999999888877665
Q ss_pred CCCCCcc
Q 029743 159 SGNNISQ 165 (188)
Q Consensus 159 ~~~~~~~ 165 (188)
+...|+.
T Consensus 628 qlhlheS 634 (705)
T KOG0639|consen 628 QLHLHES 634 (705)
T ss_pred eeccccc
Confidence 5544443
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=1.8e-20 Score=145.40 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=130.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
++|+|++.+|++++.|++|.||+..+.+.+..+.+|...|..+.|.|-|++|++-+.|++|++|.....
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 579999999999999999999999999999999999999999999999999999999999999996431
Q ss_pred -----------------------------cc-----------ccceeeeccCCceeEE-eec-----CCC----------
Q 029743 70 -----------------------------KD-----------CSDRFVGLSPNSVDAL-LKL-----DED---------- 93 (188)
Q Consensus 70 -----------------------------~~-----------~~~~~~~~~~~~v~~~-~~~-----~~~---------- 93 (188)
.. .-..+.+ |..++.++ |+| ..+
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 00 0112347 88899999 866 122
Q ss_pred --EEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 94 --~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+++|+.|+.|.||.....+++..+..-.+..|.+++|+|||..|+.++.||+|.++.++....
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 5788999999999998777776655433344799999999999999999999999999887553
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=9.5e-21 Score=133.76 Aligned_cols=163 Identities=17% Similarity=0.239 Sum_probs=128.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
+.|.++++.+++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 467889999999999999999999999999999999999999988765544667776666666666431
Q ss_pred ---------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 70 ---------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 70 ---------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
..+..... -.+.++++ .+++|..+.+++.|.++.+.|+++.+....+.+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 12222222 23467888 7889999999999999999999998877776543
Q ss_pred C---CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCCCcc
Q 029743 122 S---EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 122 ~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 165 (188)
. ...++.+.|+|++.|+++|+.||.|+||++.+++.+.....+.
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 2 1247889999999999999999999999999988766554433
No 103
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=4e-20 Score=130.17 Aligned_cols=155 Identities=11% Similarity=0.143 Sum_probs=129.6
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|+| +.+.+|+|+.|.+|.||.+..+ +++..+.+|...|--++|+|.. +.|++++.|..|.+|++.++ .
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg-e 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG-E 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC-c
Confidence 46888 5677999999999999999754 3456778999999999999954 78899999999999999874 5
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe---CCCcE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSML 147 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i 147 (188)
.+-.+. |...+.++ |+.+|.++++.+.|..|+|||.++++.+..-.+|.+..-..+.|-.++..+.+|- .+.++
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 444454 88999999 9999999999999999999999999999888888776677788988998444442 57899
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
-+||..+....
T Consensus 244 aLwdp~nl~eP 254 (472)
T KOG0303|consen 244 ALWDPNNLEEP 254 (472)
T ss_pred eccCcccccCc
Confidence 99998876543
No 104
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.8e-19 Score=128.26 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=127.7
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
.+.||+|+.|.+|++||+.++++..++..|...|.++.|+| ....|++|+.|+++.+.|.+.....-..++ ..+.|-
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VE 333 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVE 333 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceE
Confidence 45689999999999999999999999999999999999999 458899999999999999986333333343 456677
Q ss_pred EE-eec-CCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 86 AL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 86 ~~-~~~-~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
.+ |.| ....++++..||.|+-+|+|. ++++.++.+|.+ +|+++++++.- .+|++++.|+.|++|++.........
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 77 766 445778888999999999997 589999999976 89999998754 46789999999999999876665444
Q ss_pred CC
Q 029743 162 NI 163 (188)
Q Consensus 162 ~~ 163 (188)
.+
T Consensus 413 ~~ 414 (463)
T KOG0270|consen 413 EH 414 (463)
T ss_pred cc
Confidence 33
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3e-19 Score=122.05 Aligned_cols=149 Identities=16% Similarity=0.247 Sum_probs=124.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|.|+|.++.|++++.||.+++|++........+. |..++.+++|.+ ...+++|+-||.|+++|+..+ . ...+.. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~-~-~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG-N-EDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC-c-ceeecc-C
Confidence 4688999999999999999999999876665665 889999999986 678899999999999999862 3 334445 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..+++|+ +.+....+++|+.|++|++||.+.......+... + .|.++.. .+..|++|+.+..|.+||+++....
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEec--cCCEEEEeecCceEEEEEcccccch
Confidence 9999999 7888889999999999999999986666666555 3 6888776 4778999999999999999987643
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.2e-20 Score=125.99 Aligned_cols=151 Identities=15% Similarity=0.212 Sum_probs=113.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-----ceee-eec----------------------------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----TVQT-RSE---------------------------------------- 34 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-----~~~~-~~~---------------------------------------- 34 (188)
|+|+.||++|++++.|+.|++|++++- ++++ .++
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 689999999999999999999998641 1110 000
Q ss_pred -------------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecC
Q 029743 35 -------------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE 100 (188)
Q Consensus 35 -------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~ 100 (188)
.|.-.+..+-...++.+|++++.|..|.+|+++ ++.++.+.. ....-+.. .+|+|+++++++-
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-nq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-ccccccceeeCCCCcEEEEecC
Confidence 011222333333345688999999999999997 677877765 44433434 6999999999998
Q ss_pred CCeEEEEecc---cC-----eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 101 NGLISLVGIL---PN-----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 101 d~~v~~~d~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.-.|++|.+- .| ..+..+.+|.. .|..++|+++.+.+++.+.||.+++||++-.
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 8889999863 22 24667889976 7999999999999999999999999998743
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.9e-19 Score=116.94 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=126.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC------C-----ce---e-eeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK------N-----TV---Q-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~------~-----~~---~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
++|+|.|.+.+.|+...+++|..... + ++ + +.-+.|.+.|.|.+|+|.|++|++|+.|..|++..
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 57999999999999999999875432 1 11 1 12235888999999999999999999999999876
Q ss_pred eCCc---------------------------------------------------ccccceeeeccCCceeEEeecCCCE
Q 029743 66 WGYF---------------------------------------------------KDCSDRFVGLSPNSVDALLKLDEDR 94 (188)
Q Consensus 66 ~~~~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (188)
++.. ++.++.+.+ |.+-+.++++-+|-.
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilalyswn~~m 196 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILALYSWNGAM 196 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEEEEecCcE
Confidence 5421 233444556 788888888888999
Q ss_pred EEEecCCCeEEEEecccCeeeeecccC------CCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 95 VITGSENGLISLVGILPNRIIQPIAEH------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 95 l~~~~~d~~v~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+++|+.|.+|++||++-..++.++... ....|.+++..|.|+.|++|..|....+||++.....+.
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 999999999999999988888776321 113689999999999999999999999999998775543
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.9e-20 Score=125.50 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=133.3
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
|-..|+.+++++.|.+..+||+++++.+..+.+|....+.++-+|..+++++++.|.+.++||++..-..+..|++ |..
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Htd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-ccc
Confidence 4456889999999999999999999999999999999999999999999999999999999999866677888999 999
Q ss_pred ceeEEeecCCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 83 SVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.++++....+..+++|+.|.+|++||+++. .++.++...+ +++.++.+..++.++.-..+..|++||++....
T Consensus 359 tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 359 TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 999994344567889999999999999874 4777777653 789999998888888888889999999987653
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.7e-19 Score=123.00 Aligned_cols=146 Identities=15% Similarity=0.260 Sum_probs=117.7
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCc----------eee-----eecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNT----------VQT-----RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~----------~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
.|+++++|+.||.|.+||++... .+. .-.+|...|..+.|-| |.-++.+++.|.++++||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 58999999999999999997532 011 1126788899999999 6678889999999999999763
Q ss_pred ccccceeeeccCCceeEE-eec---CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE-EEEEeCC
Q 029743 70 KDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISHD 144 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d 144 (188)
+....+. ..+.|++- ++| ..-++++|..+-.|++.|+.+|....++.+|.+ .|.++.|+|...+ |++|+.|
T Consensus 135 -Q~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 4333444 45566665 566 244788888999999999999999999999988 7999999998776 5799999
Q ss_pred CcEEEEeCCCc
Q 029743 145 SMLKLWDLDDI 155 (188)
Q Consensus 145 ~~i~iwd~~~~ 155 (188)
|.|++||++..
T Consensus 211 g~irlWDiRra 221 (397)
T KOG4283|consen 211 GAIRLWDIRRA 221 (397)
T ss_pred ceEEEEEeecc
Confidence 99999999876
No 110
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=1.7e-19 Score=122.67 Aligned_cols=158 Identities=14% Similarity=0.165 Sum_probs=124.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce-eeeec-----ccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
+.|.|++..+++-. +..|.+|++..+.. ...+. .+....++-+|+| +++.+++.+ |+++..||+++....
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 35889999998876 79999999987654 33332 3456688889999 677777654 679999999974443
Q ss_pred cceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEE
Q 029743 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~ 148 (188)
...-.. |...++.+ |+|+-+ +|++++.||.|++||.+. ..++..+.+|.. .|+++.|+|.- +.+++++.|..|.
T Consensus 207 ~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 207 NSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred cchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeE
Confidence 333344 88899999 999766 678889999999999986 558899999976 89999999954 5668999999999
Q ss_pred EEeCCCccCCCCCC
Q 029743 149 LWDLDDILKGSGNN 162 (188)
Q Consensus 149 iwd~~~~~~~~~~~ 162 (188)
+|.......++.++
T Consensus 285 Lsca~svSSE~qi~ 298 (370)
T KOG1007|consen 285 LSCASSVSSEQQIE 298 (370)
T ss_pred EEeccccccccccc
Confidence 99988776655443
No 111
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=9.8e-20 Score=138.31 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=136.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeee---cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++.++.|++.+.|+..|.|-+|++++|.....+ +.|..+|++++...-++.+++++.+|.++.||... +..+..+.
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~ 532 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLR 532 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeec
Confidence 467889999999999999999999999888777 58999999999988889999999999999999975 45555555
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
-...+.++ .+.....++.+..|-.|+++|..+.+.++.+.+|.+ .|++++|+|||++|++++.|++|++||+.++.
T Consensus 533 --l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-ritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 533 --LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-RITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred --cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-ceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 34556666 688888999999999999999999999999999977 89999999999999999999999999999886
Q ss_pred CCC
Q 029743 157 KGS 159 (188)
Q Consensus 157 ~~~ 159 (188)
...
T Consensus 610 lID 612 (910)
T KOG1539|consen 610 LID 612 (910)
T ss_pred eee
Confidence 443
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=1.3e-19 Score=131.57 Aligned_cols=154 Identities=12% Similarity=0.144 Sum_probs=124.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ce-eeeeccccc--ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TV-QTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~-~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|+|+++|+|..||.|.+|+.... ++ ...-.+|.. .|+++.|+++|++|++-+.|+++++||+++.++++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 479999999999999999999997542 22 222346776 8999999999999999999999999999988788777
Q ss_pred eeeccC---CceeEEeecCCCEEEEecC------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 76 FVGLSP---NSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 76 ~~~~~~---~~v~~~~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
..+ -. ....|+|+|+.+++++|.. .|.+.+||..+...+..+... ...|..+.|+|.=+.|..++.||.
T Consensus 403 ~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 403 RTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCc
Confidence 654 22 2234559999999999863 467999999888888887665 347889999998888888999999
Q ss_pred EEEEeCCCcc
Q 029743 147 LKLWDLDDIL 156 (188)
Q Consensus 147 i~iwd~~~~~ 156 (188)
++||-=.+..
T Consensus 481 ~~vyYdp~~S 490 (641)
T KOG0772|consen 481 AHVYYDPNES 490 (641)
T ss_pred eEEEECcccc
Confidence 9998655543
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.6e-19 Score=117.49 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=120.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc-cccceeeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~ 79 (188)
-|+.|++++.|++|+|+.++.. +++..+.+|.++|+.++|.. .|.+|++++.||.|.||.-..+. ........
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence 4789999999999999999753 56778899999999999976 89999999999999999976531 22333456
Q ss_pred cCCceeEE-eec--CCCEEEEecCCCeEEEEecccC---eeeeecccCCCcceeEEEeeCC---C-----------CEEE
Q 029743 80 SPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHD---R-----------KFLG 139 (188)
Q Consensus 80 ~~~~v~~~-~~~--~~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~ 139 (188)
|...+.++ |.| -|-.|++++.||.|.+.+.+.. ........|.- .|++++|.|. | +.|+
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccceee
Confidence 88899999 655 4668999999999999988754 12334566755 6999999985 4 5699
Q ss_pred EEeCCCcEEEEeCCCc
Q 029743 140 SISHDSMLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (188)
+|+.|+.|+||+..+.
T Consensus 180 SgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSD 195 (299)
T ss_pred ccCCccceeeeecCCc
Confidence 9999999999998874
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=1.7e-19 Score=130.72 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=128.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----- 75 (188)
|+.|||.+..+++..||.|.|||+.+...++.+++|...+.||..+++|..|.+|+-|.+|+.||++...+..+.
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh
Confidence 578999999999999999999999999999999999999999999999999999999999999999864221110
Q ss_pred ----------------------------------eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc
Q 029743 76 ----------------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (188)
Q Consensus 76 ----------------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~ 120 (188)
+.- |...|.++ |.+.|+.+++.+.|+.+-.|...-|..+.+...
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCccceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc
Confidence 112 56667788 889999999999999999998888888877765
Q ss_pred CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 121 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+ .|.++.++.|.+++++|+.|..-.||.+
T Consensus 674 ~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 53 7999999999999999999988888865
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.4e-18 Score=118.67 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=121.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC--EEEEecCCCeEEEEEeCCcccccceee-
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~- 77 (188)
++|+.||..+++|+.|+.+++||+.+++. ..+..|..+|..+.|-+... .|++|+.|.+|+.||.+.. .++.++.
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L 155 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL 155 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeeec
Confidence 47999999999999999999999999966 45667999999999988654 8999999999999999853 2222210
Q ss_pred ------------------------------------e---ccCCceeEE-eecCCCEEEEecCCCeEEEEecccC--eee
Q 029743 78 ------------------------------------G---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RII 115 (188)
Q Consensus 78 ------------------------------------~---~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~--~~~ 115 (188)
. --+-.++|+ +.++....+.|+.+|.+.+..+..+ +.-
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 0 012246777 5677777799999999999888775 333
Q ss_pred eecccCC--------CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 116 QPIAEHS--------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 116 ~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.+++.|. -+.|++++|+|....|++++.||++.+||-.......
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 3444443 2468899999999999999999999999987655443
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=119.67 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=123.3
Q ss_pred eEEEEeCCCcEEEEEcCCC------------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 9 KLLGTSGDGTLSVCNLRKN------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
.+++|+....|.=+++.-. .++..+..|.+.+++++. ++.++++|+.|.+|+|||++. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 3677787777766665321 124456689999999998 589999999999999999986 5667777
Q ss_pred eeccCCceeEE-eecCCC--EEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~--~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.. |.+.++++ |.++-. .|++|+.||.|.+|+.....++..+.+|.+ +|+.++.+|.++..++.+.|+.+++||+-
T Consensus 80 l~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhh
Confidence 77 99999999 866544 899999999999999999999999999987 79999999999999999999999999998
Q ss_pred CccCCCC
Q 029743 154 DILKGSG 160 (188)
Q Consensus 154 ~~~~~~~ 160 (188)
++.....
T Consensus 158 ~Gr~a~v 164 (362)
T KOG0294|consen 158 RGRVAFV 164 (362)
T ss_pred cCcccee
Confidence 8765433
No 117
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=3.4e-20 Score=123.74 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=130.5
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCce
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
.+....++++.|-+-++||.-+|..+..+. |...|.+++|+.|.++|++|+.+..+++||++....+...+.+ |.+.|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~I 146 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGI 146 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcc
Confidence 344456777888899999999999888886 8889999999999999999999999999999887788888999 99999
Q ss_pred eEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+.+ |....+.+++...|++|++||.+++..++.+.... +|+++.++++|++|.++ ..+.|.+||..+......
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccceee
Confidence 999 77767788888999999999999999999998763 79999999999877544 677899999988765443
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=4.2e-19 Score=133.58 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=85.5
Q ss_pred EEEEecCCCeEEEEEeCCcccccceeeec--cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCccee
Q 029743 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (188)
Q Consensus 51 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~ 127 (188)
++++++.|.+|+||++.. +...+.|++. |.+....+ ..|.|.|+++.+.|.++-++|.-+++++.++.+|.+ .|+
T Consensus 610 ~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VT 687 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVT 687 (1080)
T ss_pred eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-hee
Confidence 566777788888888865 4566666552 33344445 689999999999999999999999999999999987 899
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+.|.+|.++|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999998764
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=121.95 Aligned_cols=146 Identities=9% Similarity=0.210 Sum_probs=112.9
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--cccccc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSD 74 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~ 74 (188)
|+|||. ...+++|+-|++|+|||++.+ .++ ..+.|.+-|+.|.|+....+|++|+.||+++|||+++ .+.++.
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 578885 456889999999999999987 233 3378999999999999888999999999999999985 346788
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCe-------------------eeeecccCCCcceeEEEeeC
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR-------------------IIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~ 133 (188)
.++. |+.+|+++ |+| +...+++++.|.+|.+||+.... +++.-.+. . .+..+.|++
T Consensus 342 ~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ-k-e~KevhWH~ 418 (440)
T KOG0302|consen 342 TFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ-K-EVKEVHWHR 418 (440)
T ss_pred eEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch-h-Hhhhheecc
Confidence 8999 99999999 988 45678888999999999985321 11111222 2 578899998
Q ss_pred CC-CEEEEEeCCCcEEEEe
Q 029743 134 DR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 134 ~~-~~l~~~~~d~~i~iwd 151 (188)
.- .+|++.+.|| +.||.
T Consensus 419 QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 419 QIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCCeEEEecccc-eeEEE
Confidence 54 3667777776 44443
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.3e-18 Score=118.74 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=124.9
Q ss_pred eec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC---CCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 3 ~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|-| |...+.+++.|.+++|||..+.+..-.++ -.+.|.+-+|+|- -.++++|..+-+|++.|+.. +....++.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-Ccceeeecc
Confidence 445 55677888899999999999988777776 4577888889883 34677888889999999986 799999999
Q ss_pred ccCCceeEE-eecCCC-EEEEecCCCeEEEEecccC-eeeeec--------------ccCCCcceeEEEeeCCCCEEEEE
Q 029743 79 LSPNSVDAL-LKLDED-RVITGSENGLISLVGILPN-RIIQPI--------------AEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~-~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
|...|.++ |+|... .|++|+.||.|++||++.. .+...+ .+|.+ .|.+++|..++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 99999999 999766 5788999999999999854 233222 34544 79999999999999999
Q ss_pred eCCCcEEEEeCCCccCC
Q 029743 142 SHDSMLKLWDLDDILKG 158 (188)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (188)
+.|..+++|+..++...
T Consensus 265 gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNT 281 (397)
T ss_pred cCccceEEeecccCccc
Confidence 99999999999887643
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=4.9e-19 Score=132.20 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=120.3
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEe
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 88 (188)
.+++|+.|.++++|-.. ++...+++|+..|++++.-|.+ .+++|+.|.+|++|.- +..++++.+ |...|+.+.
T Consensus 114 ~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 38999999999999854 4555689999999999998877 8899999999999974 588999999 999999995
Q ss_pred ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
--++..++++++||.|++|++ +++++..+.+|.. -|+++....++..++++++|++++||+..
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 444557889999999999999 7899999999977 69999988888899999999999999987
No 122
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=122.82 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=118.4
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec---cCCc
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL---SPNS 83 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~ 83 (188)
...+++|..|++|++||.+...+....+.+. .|+++..++++..+.+++.|.++.+.|+++ ......+... -...
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASD 389 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccccccc
Confidence 3456777889999999999999888888654 999999999999999999999999999986 3544444320 1122
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-cceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.+.+ |||++.|+++|+.||.|+||++.++++...+..... ..|++++|+|.|..|++++.++.+.+|.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4444 899999999999999999999999998888765543 2599999999999999999999999983
No 123
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.81 E-value=9.3e-18 Score=112.69 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=106.6
Q ss_pred CeeecccCeEEEEeC----------CCcEEEEEcCC-Cceeeeec-ccccceEEEEEEeCCCEEEEe--cCCCeEEEEEe
Q 029743 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSE-FSEEELTSVVLMKNGRKVVCG--SQSGTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~~----------d~~i~i~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~ 66 (188)
|.|+|+|++|+.-.. -+...+|-++. +.....+. ...++|.+++|+|+|+.|++. ..+..|.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 468999999876543 12344554422 22333333 234579999999999987654 45679999999
Q ss_pred CCcccccceeeeccCCceeEE-eecCCCEEEEecC---CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+ ...+..+ ....+..+ |+|+|+++++++. .|.|.+||+++.+.+...... .+..++|+|+|++|+++.
T Consensus 91 ~--~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEEE
Confidence 6 3444444 34556777 8999999998864 467999999988888776533 478999999999999876
Q ss_pred C------CCcEEEEeCCCcc
Q 029743 143 H------DSMLKLWDLDDIL 156 (188)
Q Consensus 143 ~------d~~i~iwd~~~~~ 156 (188)
. |+.++||+.....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 3 7899999987543
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=6.3e-19 Score=117.23 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=119.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCce--eeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCc-ccc-cceeeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYF-KDC-SDRFVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~-~~~-~~~~~~~ 79 (188)
.|.+||+++.||.|.||.-..++- ......|...|++++|.|. |-.|++++.||.|.+.+++.. +-. .+....
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a- 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA- 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-
Confidence 689999999999999999887732 3345589999999999995 468899999999999999764 222 233455
Q ss_pred cCCceeEE-eecC---C-----------CEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeCCC----CEE
Q 029743 80 SPNSVDAL-LKLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR----KFL 138 (188)
Q Consensus 80 ~~~~v~~~-~~~~---~-----------~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l 138 (188)
|...+.++ +.|. | +.|++|+.|+.|+||+..+++ .-.++.+|.+ .|+.++|.|.- .+|
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceee
Confidence 88888888 6553 4 569999999999999988754 3455899988 79999999953 578
Q ss_pred EEEeCCCcEEEEeCCC
Q 029743 139 GSISHDSMLKLWDLDD 154 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (188)
++++.||++.||..+.
T Consensus 227 AS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDE 242 (299)
T ss_pred EEecCCCcEEEEEecC
Confidence 9999999999998773
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.5e-18 Score=111.69 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=126.6
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeec--cc-----ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FS-----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++-++-.+++|+.|.+|++||++-..++.++. .| .+.|.+++..|.|++|++|..|....+||++. +++++.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~ 268 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQR 268 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-Cceeee
Confidence 34567789999999999999999887777664 12 35799999999999999999999999999985 799999
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC----eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
+.. |...++|+ |+|...|+++++.|..|++-|++.. -++..+..|++ .+-.+.|+|..-.+++.+.|.++.+|
T Consensus 269 f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd-k~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 269 FHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD-KAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC-ceEEEEecCccceeeeccCcceEEEe
Confidence 999 99999999 9999999999999999999998742 23445566766 67778999998889999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
.++
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 865
No 126
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.5e-18 Score=117.86 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=115.4
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcccccceeeeccCC-ce
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SV 84 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~v 84 (188)
..+|++...|.|++||..+++.+..+++++..+..+.|.. ....+.+++.||.|++||++...+..+.....+.+ +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4578888899999999999999999999999999999987 45788999999999999999754443333221332 33
Q ss_pred eEEe-ecCCCEEEEecC----CCeEEEEecccCee-eeec-ccCCCcceeEEEeeCC-CCEEEEEeCCCcEEEEeCCCc
Q 029743 85 DALL-KLDEDRVITGSE----NGLISLVGILPNRI-IQPI-AEHSEYPIESLALSHD-RKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 85 ~~~~-~~~~~~l~~~~~----d~~v~~~d~~~~~~-~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.++. ...++.+++|.. +-.|.+||+|..+. +..+ ..|.+ .|+++.|+|. -..|++|+.||.|.+||++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 4442 446778888763 56799999998765 5554 56766 8999999995 468899999999999999865
No 127
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.6e-18 Score=122.21 Aligned_cols=124 Identities=10% Similarity=0.132 Sum_probs=108.6
Q ss_pred eecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc------cccceeeeccCCceeEE-eecC-CCEEEEecCCC
Q 029743 32 RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENG 102 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~ 102 (188)
.+.+|.++|..++|+| +...|++|+.|.+|.+|.+...+ .++..+.+ |...|.-+ |+|. .+.|++++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence 3458999999999999 66889999999999999996432 45667889 99999988 8884 56889999999
Q ss_pred eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 103 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+|.+|++.+++.+.++. |.+ .|+++.|+.||.+|++++.|..|+|||.+++...
T Consensus 155 ~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred eEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCCCcEe
Confidence 99999999999888887 777 8999999999999999999999999999987643
No 128
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=1.6e-18 Score=123.96 Aligned_cols=154 Identities=13% Similarity=0.273 Sum_probs=132.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee-----------------ee-cccccceEEEEEEeCCCEEEEecCCCeEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-----------------RS-EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-----------------~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (188)
|+++|+.++.++++.+++|.-|++.++.... .- +.|...+.+++.++||++|++|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 4789999999999999999999987765320 11 26778899999999999999999999999
Q ss_pred EEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
||+.++ .+.++.+.+ |...|.++ |-.....+++++.|+.|++|+++....+.++.+|.+ .|.++....-++.+.+|
T Consensus 228 Iw~~~t-~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCDT-LEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCcc-cchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 999987 688889999 99999999 555556799999999999999999999999999987 79898888777777788
Q ss_pred eCCCcEEEEeCCCccC
Q 029743 142 SHDSMLKLWDLDDILK 157 (188)
Q Consensus 142 ~~d~~i~iwd~~~~~~ 157 (188)
+.|+++++|++.....
T Consensus 305 grDrT~rlwKi~eesq 320 (479)
T KOG0299|consen 305 GRDRTVRLWKIPEESQ 320 (479)
T ss_pred cccceeEEEeccccce
Confidence 8999999999965443
No 129
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.7e-18 Score=122.57 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=124.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----- 75 (188)
++|+++|..|++++.||++|||+......+.....|...|.++.|+|||+.|++-+.| ..++|+.+++ .+++.
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5899999999999999999999988887777778899999999999999999999999 8999999753 11100
Q ss_pred ---------------------e--e------------ec-------------cCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 76 ---------------------F--V------------GL-------------SPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 76 ---------------------~--~------------~~-------------~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
. . -. ....+.++ .+++|++++.|+.+|.|.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 0 0 00 12356777 6999999999999999999
Q ss_pred EecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
++..+-+.++.+ +.|.. -|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 308 ~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999887776655 45644 899999999999999999999888887764
No 130
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.1e-19 Score=121.63 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=127.9
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe------CCc-------------
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW------GYF------------- 69 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~------~~~------------- 69 (188)
.+.+++.|.+.+||.++++.++....+|.+.|.+++|++.+.++++++.|++.+||.. ...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 5678889999999999999999999999999999999999999999999999999973 110
Q ss_pred --------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE
Q 029743 70 --------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (188)
Q Consensus 70 --------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~ 128 (188)
..++..+.+ |...+.+. |-..|+.+++++.|.+..+||+.+++++..+.+|.. ..+.
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtH 319 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTH 319 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-hccc
Confidence 123444677 88888888 778899999999999999999999999999999965 7889
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 129 LALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
++-+|..+.+++.+.|.+.++||++..
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhh
Confidence 999999999999999999999999854
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=1.5e-18 Score=121.11 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=114.8
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc------------------
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------------ 69 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------------ 69 (188)
..+++|+.||.|+|||+....+...+.+|.+.|..|++.. ..+++++.|.+|+.|.+...
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 5689999999999999999999999999999999999975 67888899999998874321
Q ss_pred --------c-----------cccceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeeee-----------
Q 029743 70 --------K-----------DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQP----------- 117 (188)
Q Consensus 70 --------~-----------~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~----------- 117 (188)
+ .+++.+.- ....+.++ |+|... .|+++..|+.|.|||++.+.++..
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is 236 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC 236 (433)
T ss_pred ccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence 1 12222222 23446677 778554 566777999999999987765432
Q ss_pred -------------------------------cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 118 -------------------------------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 118 -------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
..+|-. .|.++.|+|.|+.+++|+.|.+|+||..+.+..+..
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 234433 789999999999999999999999999998765543
No 132
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=7.8e-19 Score=130.71 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=127.1
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
+.|.| |.+.||.++.||.|++|.+..+ .+...+..|...|+++.|+| ..+.|++++.|.+|++||+.+ ..
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hh
Confidence 35777 7788999999999999998653 34556778999999999999 557899999999999999987 46
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCC----C
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHD----S 145 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~ 145 (188)
....+.+ |...|..+ |+|+|+++++.+.||+|++|..++++ +++.-.+..+..--.+.|.-+|++++..+.| .
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 6667889 99999999 89999999999999999999998765 4444444333334567898999999877755 5
Q ss_pred cEEEEeCCCccCC
Q 029743 146 MLKLWDLDDILKG 158 (188)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (188)
+|.+||.++....
T Consensus 791 Qv~~Y~Aq~l~~~ 803 (1012)
T KOG1445|consen 791 QVQMYDAQTLDLR 803 (1012)
T ss_pred hhhhhhhhhccCC
Confidence 7899998876533
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=5e-18 Score=121.55 Aligned_cols=151 Identities=12% Similarity=0.087 Sum_probs=114.6
Q ss_pred Ceeeccc--CeEEEEeCCCcEEEEEcCC----CceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc----
Q 029743 1 MTFAADA--MKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF---- 69 (188)
Q Consensus 1 l~~s~~~--~~l~~~~~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---- 69 (188)
++|+|.. +++|+|+..|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++.+.||+|++-|+...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 4788854 5788888999999999952 233456678999999999999 4478888889999888776421
Q ss_pred ----------------------------------------ccccceeeeccCCceeEE-eecC-CCEEEEecCCCeEEEE
Q 029743 70 ----------------------------------------KDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLV 107 (188)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~ 107 (188)
+.....+.- |...|..+ ++|. ..++++++.|++++||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111222233 56678888 7884 4578999999999999
Q ss_pred ecccCe----eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 108 GILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 108 d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|++.-. ++.....|.. .|.+..|+|.+-.|++.+.|..|+|||..
T Consensus 351 D~R~l~~K~sp~lst~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ehhhhcCCCCcceecccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 998532 2233345655 89999999988889999999999999984
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.7e-17 Score=127.45 Aligned_cols=155 Identities=17% Similarity=0.291 Sum_probs=132.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++|.|+|++|++++.|+.|++|+.... +....+..+...|.+++. ++.+|++++.+++|.+|.+.. +..-..+..
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps-~~~~~iL~R- 94 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS-GEEDTILAR- 94 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC-CCccceeee-
Confidence 478999999999999999999997665 444444447777777776 566999999999999999976 454445555
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..-+++++ ++.+|++++.|+.|-.|++.++........+.+|.. +|.++.|+|++.+||+.+.||.|++|++.++...
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 67788988 799999999999999999999999999999999965 9999999999999999999999999999987654
Q ss_pred CC
Q 029743 159 SG 160 (188)
Q Consensus 159 ~~ 160 (188)
..
T Consensus 174 ~t 175 (933)
T KOG1274|consen 174 KT 175 (933)
T ss_pred hh
Confidence 43
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=2.4e-18 Score=128.15 Aligned_cols=151 Identities=13% Similarity=0.226 Sum_probs=122.0
Q ss_pred cccCeEEE--EeCCCcEEEEEcCC-Ccee-eeec--ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc------c
Q 029743 5 ADAMKLLG--TSGDGTLSVCNLRK-NTVQ-TRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------D 71 (188)
Q Consensus 5 ~~~~~l~~--~~~d~~i~i~~~~~-~~~~-~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~------~ 71 (188)
.+...+|. ++..|.|-||++.. |++. ..++ .....|+.+.|.| |...|++++.||.|++|.+...+ .
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 34444443 34568999999875 2221 1122 1345799999999 77899999999999999996432 3
Q ss_pred ccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 72 CSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
+...+.. |...|+++ |+| ....|++++.|-+|++||+++++....+.+|.+ .|.+++|+|+|+.+++.+.||+|++
T Consensus 669 Pe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 669 PEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred cceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEE
Confidence 4456788 99999999 988 567899999999999999999999999999988 8999999999999999999999999
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
|+.++...
T Consensus 747 y~Prs~e~ 754 (1012)
T KOG1445|consen 747 YEPRSREQ 754 (1012)
T ss_pred eCCCCCCC
Confidence 99887653
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=6.5e-18 Score=128.60 Aligned_cols=144 Identities=17% Similarity=0.277 Sum_probs=127.6
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
-++.+++++.+|.+..|+......+..+. -...+.++..+.....++++..|-.|+++|+.+ ...++.+.+ |...++
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~g-h~nrit 580 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFWG-HGNRIT 580 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhhc-ccccee
Confidence 45679999999999999999888777776 455788888888888999999999999999987 688899999 999999
Q ss_pred EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC-CcEEEEeCCC
Q 029743 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-SMLKLWDLDD 154 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~ 154 (188)
.+ |||||+.|++++.|++|++||+.++.++-.+... . ++.++.|+|+|.+||+...| ..|++|.-..
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-~-~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-S-PCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-C-cceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 99 9999999999999999999999999998877655 3 78999999999999999988 7899996444
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.3e-17 Score=110.41 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=116.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC----ceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~---- 70 (188)
+.|.+.|+.+|+++.|.+|+|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.=....
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 468889999999999999999997543 44556678999999999976 67999999999999999752111
Q ss_pred ----cccceeeeccCCceeEE-eec--CCCEEEEecCCCeEEEEeccc--------------------------------
Q 029743 71 ----DCSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILP-------------------------------- 111 (188)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~v~~~d~~~-------------------------------- 111 (188)
....++.. ....++.+ |.| -|-.+++++.||.++||+.-.
T Consensus 99 ~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 99 GRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred cceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 11233444 66788888 866 577889999999999997510
Q ss_pred -----------------------------------CeeeeecccCCCcceeEEEeeCCC----CEEEEEeCCCcEEEEeC
Q 029743 112 -----------------------------------NRIIQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDL 152 (188)
Q Consensus 112 -----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~ 152 (188)
...+.++.+|.+ +|++++|.|+- ..|++++.|| |+||.+
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 001233445655 89999999953 4689999999 999999
Q ss_pred CCcc
Q 029743 153 DDIL 156 (188)
Q Consensus 153 ~~~~ 156 (188)
+...
T Consensus 256 ~~~~ 259 (361)
T KOG2445|consen 256 KVAR 259 (361)
T ss_pred eecc
Confidence 8654
No 138
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=8.7e-17 Score=112.56 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=118.8
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecc---cccceEEEEEEeCCCEEEEec--CCCeEEEEEeCCcccccceeeeccC
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
-+.|+++-. ..|+|||+++.+++.++.. +...+.++.+++.+.+++.-+ ..|.|.+||+.+ -+....+.. |.
T Consensus 97 r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H~ 173 (391)
T KOG2110|consen 97 RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-HK 173 (391)
T ss_pred cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-cC
Confidence 345555544 4599999999988887763 344456666666666887533 358999999976 577788888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCe-EEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 82 NSVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+.+.++ |+++|.+||+++..|+ |||+.+.+|+.+.+|+... ...|++++|+|++++|++.+..++|++|.+++..
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999 8999999999999987 7999999999998886432 2478999999999999999999999999999876
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=1.1e-16 Score=110.72 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=116.8
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeec-----ccccceEEEEEEeCC----CEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSE-----FSEEELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+.+++.+. +.+.+|.....--++.++ .|......++|+-+. .+++.++.-|.|++.|+.. +++...+.+
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g 133 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG 133 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec
Confidence 34455444 678888876432222222 366677888887643 4788899999999999976 688888999
Q ss_pred ccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeec---ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 79 LSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|...|..+ ++|+ .+++++++.|..|++|++++..++..+ .+|.+ .|.++.|++++.++++++.|..|++|++.
T Consensus 134 -hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 134 -HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred -cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 99999999 8884 578999999999999999999998876 56766 79999999999999999999999999999
Q ss_pred Ccc
Q 029743 154 DIL 156 (188)
Q Consensus 154 ~~~ 156 (188)
...
T Consensus 212 ~~~ 214 (385)
T KOG1034|consen 212 VKE 214 (385)
T ss_pred hhH
Confidence 654
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=114.66 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=119.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEc-CCCce--eeeec-----ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--QTRSE-----FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~-~~~~~--~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
|+|+|||.+|++|.. +.|+++|+ +.|+. ..... +..+.+.+++|+| +.+.++.++....+-||.-.. +.
T Consensus 164 L~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RR 241 (406)
T ss_pred EEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-CC
Confidence 579999999998765 89999998 44422 11111 2356789999999 556899999988888888764 68
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecC-CCeEEEEeccc-CeeeeecccCCCcceeE--EEeeCCCCEEEEEeCCCc
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSEYPIES--LALSHDRKFLGSISHDSM 146 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~-~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~ 146 (188)
++..+-+ |.+.|+.+ |.++|+.|++|.. +..|..||++. ..++..+..|.+..-.. ....|++++|++|+.||.
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~ 320 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS 320 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc
Confidence 8888889 99999999 8999999999985 67899999985 55666776654311222 455689999999999999
Q ss_pred EEEEeCCCc
Q 029743 147 LKLWDLDDI 155 (188)
Q Consensus 147 i~iwd~~~~ 155 (188)
|++||+++.
T Consensus 321 V~vwdlk~~ 329 (406)
T KOG2919|consen 321 VRVWDLKDL 329 (406)
T ss_pred EEEEecCCC
Confidence 999999984
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.76 E-value=4e-17 Score=122.15 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=120.6
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
-|++ .+++|+.|.+|++|.- ++.++++.+|.+.|..+++-++ ..|++++.||.|++|++. ++++....+ |...
T Consensus 149 l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~--ge~l~~~~g-htn~ 221 (745)
T KOG0301|consen 149 LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD--GEVLLEMHG-HTNF 221 (745)
T ss_pred cCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc--Cceeeeeec-cceE
Confidence 3444 8999999999999984 7888999999999999999875 467899999999999994 688888999 9999
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
++++ ..+++..+++++.|+++++|+.. ++.+.+.-+.. .|+++.+-++|.. ++|+.||.|+||......
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgDI-vvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGDI-VVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCCE-EEeccCceEEEEEecccc
Confidence 9999 57888999999999999999975 66666665543 6999999988864 567889999999877543
No 142
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.8e-17 Score=108.11 Aligned_cols=157 Identities=15% Similarity=0.224 Sum_probs=119.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC---------C-ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
+++|.+++|++|..+|.|.++.+.+ + ..+...++|..++..++|. ..+|++++. |.|+-|..+...+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhh
Confidence 5899999999999999999998753 1 2233446899999999997 456666664 9999998754211
Q ss_pred ------ccceeeec-----cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE
Q 029743 72 ------CSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 72 ------~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
.......- .-..|.++ ..|..+-+++++.|+.++-||+++|+..+++++|.+ -|.+++-......++
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRNANGQIL 172 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecccCccee
Confidence 01111110 11346677 478777777777999999999999999999999998 599998866666788
Q ss_pred EEeCCCcEEEEeCCCccCCCCCC
Q 029743 140 SISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
+|++||++++||+++.+....++
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ecCCCccEEEEeccccceeEEec
Confidence 99999999999999987655544
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=5.6e-17 Score=112.12 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=114.0
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--c---c
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--D---C 72 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~---~ 72 (188)
.|.| +.+++++++.|..|++|++++..++..+- +|...|.++.|+++|.+|++++.|.++++|++.... . +
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 4566 45789999999999999999999988875 799999999999999999999999999999997210 0 0
Q ss_pred c----------------------------------------------------------------------------cee
Q 029743 73 S----------------------------------------------------------------------------DRF 76 (188)
Q Consensus 73 ~----------------------------------------------------------------------------~~~ 76 (188)
. ..+
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~ 301 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEF 301 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEe
Confidence 0 000
Q ss_pred eeccCCceeEE-e--ecCCCEEEEecCCCeEEEEecccCeee--eecc-cCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 77 VGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRII--QPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 77 ~~~~~~~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
.- ....++-+ | .|-++.|+.|...|.|++||++...+. .++. ...+..|...+|+.|+..|+....|++|--|
T Consensus 302 ~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 302 DY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred cc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 00 11122333 2 456677889999999999999876542 1221 1123479999999999999999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
|.-
T Consensus 381 drv 383 (385)
T KOG1034|consen 381 DRV 383 (385)
T ss_pred Eee
Confidence 853
No 144
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.5e-17 Score=120.67 Aligned_cols=155 Identities=27% Similarity=0.383 Sum_probs=124.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC--------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc---
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--- 69 (188)
++|.|-...|++++.|+.|.+|+++. -+++.++.+|.++|.|++..++++.+++|+-||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 35677778899999999999999932 2567788999999999999999999999999999999966421
Q ss_pred ------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC------------------------------
Q 029743 70 ------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN------------------------------ 112 (188)
Q Consensus 70 ------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~------------------------------ 112 (188)
......+.| |...++.+ +|+....|++++.||++++|+....
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 134556788 99999999 6888888999999999999986211
Q ss_pred ---------------------------------------------------------------eeeeecccCCCcceeEE
Q 029743 113 ---------------------------------------------------------------RIIQPIAEHSEYPIESL 129 (188)
Q Consensus 113 ---------------------------------------------------------------~~~~~~~~~~~~~v~~~ 129 (188)
.++....+|.. .++++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtsl 537 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSL 537 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc-eecce
Confidence 11111223444 68899
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
++.|+|.+|++++.|+.+++|.+.....
T Consensus 538 ai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eecCCCceEEeecCCceeehhhccchhe
Confidence 9999999999999999999999876553
No 145
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.1e-17 Score=112.58 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=112.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcC---CC-----ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLR---KN-----TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---- 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---- 69 (188)
+.||+|+++++++....|++|.+- .| .....+++|...|..++|+++.+.+++.+.||.+++||.+..
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 689999999999999999999873 23 234567899999999999999999999999999999998632
Q ss_pred --cccccee----eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc-cCCCcceeEEEeeCCCCEEEEE
Q 029743 70 --KDCSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 70 --~~~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
...++.. .. ..+....+ .+|+|+.|+.... ..+++|..+.++...++. .|.+ .|.+++|+++|++++++
T Consensus 315 qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATC 391 (420)
T ss_pred CCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeee
Confidence 1122221 11 22233355 6999998887654 369999999888766664 3544 89999999999999988
Q ss_pred eCCCcEEEEe
Q 029743 142 SHDSMLKLWD 151 (188)
Q Consensus 142 ~~d~~i~iwd 151 (188)
+ |..++++.
T Consensus 392 G-dr~vrv~~ 400 (420)
T KOG2096|consen 392 G-DRYVRVIR 400 (420)
T ss_pred c-ceeeeeec
Confidence 7 77788775
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.2e-16 Score=117.95 Aligned_cols=155 Identities=14% Similarity=0.255 Sum_probs=125.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-ceeeeeccc-ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|||+.+.+.||.+=.+|.|-+|++..+ -....+.++ ...|.+++|+ .+..|++.+.+|.|.-||+.+ ......+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~ 108 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT-LKQKYNIDS 108 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc-CceeEEecC
Confidence 588999999999999999999999875 333444443 4579999999 466788889999999999986 466667777
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee--cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..+.++++ .+|.+..++.||.||.+..++...++.... +.... ++|.++.|+|++..+++|+.||.|++||..+.
T Consensus 109 -~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~-sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 -NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK-SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred -CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc-ceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 88899999 699999999999999777777766664432 22232 48999999999999999999999999999987
Q ss_pred cCCC
Q 029743 156 LKGS 159 (188)
Q Consensus 156 ~~~~ 159 (188)
....
T Consensus 187 ~t~~ 190 (691)
T KOG2048|consen 187 QTLH 190 (691)
T ss_pred ceEE
Confidence 6544
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=5.6e-16 Score=110.89 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=113.1
Q ss_pred CeeecccCeE-EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|+++.+ ++++.++.|++||..+++....+..+. .+..++|+|+++.++++ ..++.+++||+.. ...+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4689999877 566778999999999888777666443 35678999999877655 5688999999976 344544442
Q ss_pred ccCCceeEE-eecCCCEEEEecCCC-eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~ 155 (188)
...+..+ ++|+|.+++++..++ .+.+||..+++....+... . .+..++|+|++++|+.+ ..++.|++||+++.
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred --CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 2335666 899999999888764 5677898887766554333 2 46789999999988654 46899999999886
Q ss_pred cC
Q 029743 156 LK 157 (188)
Q Consensus 156 ~~ 157 (188)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1e-16 Score=109.73 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=117.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.+++-...+++|+.|++|++||.+.......+. ....|.++.. .++.|+.|+.+..+.+||+++-....+.-...-+
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 355666789999999999999998755555544 3346777765 5789999999999999999875444433222134
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccC----eeeeecccCCC--------cceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~----~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
-.++|+ +.|++.-.++++.+|.|.+=.+... +....|+.|.. ++|++|+|+|-...|++|+.||.|.
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~ 257 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVN 257 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEE
Confidence 568888 6888888999999999887666543 23334444431 5899999999999999999999999
Q ss_pred EEeCCCccCCCC
Q 029743 149 LWDLDDILKGSG 160 (188)
Q Consensus 149 iwd~~~~~~~~~ 160 (188)
+||+.+.+....
T Consensus 258 ~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 258 IWDLFNRKRLKQ 269 (323)
T ss_pred EccCcchhhhhh
Confidence 999998765443
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=1.4e-17 Score=117.69 Aligned_cols=156 Identities=15% Similarity=0.247 Sum_probs=128.9
Q ss_pred eeecccC-eEEEEeCCCcEEEEEcCCCc---------eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC---
Q 029743 2 TFAADAM-KLLGTSGDGTLSVCNLRKNT---------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--- 68 (188)
Q Consensus 2 ~~s~~~~-~l~~~~~d~~i~i~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--- 68 (188)
.|.++.. .+++|+.|..|++|-+..+. .+..+..|...|+++.|+|+|+.|++|+.+|.+.+|....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555554 89999999999999876421 2335568999999999999999999999999999998751
Q ss_pred ---cc---------cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 69 ---FK---------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 69 ---~~---------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
.. ...+.+.+ |...+..+ |+|++.++++++.|+.+++||+..|.....+..|.. -+..++|.|-+
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhh
Confidence 00 11233456 88888889 899999999999999999999999999999999976 69999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCccCCC
Q 029743 136 KFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+++++-+.|...+.+.+.......
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred hhhhhhccCcccceeeeeeeeeee
Confidence 999999999988888877655433
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1e-16 Score=109.23 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=123.8
Q ss_pred eeec--ccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+||| +|+.+++. .|+++..||+++..+...+. +|...|..+.|+|+- .+|++|+.||.|++||.+..+.+++.+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 4777 77777775 56999999999877666665 788899999999976 5678999999999999998889999999
Q ss_pred eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccC-----------------------------eeeeecccCCCcce
Q 029743 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (188)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~-----------------------------~~~~~~~~~~~~~v 126 (188)
+ |...++++ |+| ..+++++|+.|..|.+|...+- ..+.++..|.+ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 99999999 887 4568889999999999976321 12345667766 89
Q ss_pred eEEEeeCCCCE-EEEEeCCCcEEEEeCCCccC
Q 029743 127 ESLALSHDRKF-LGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 127 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~ 157 (188)
++++|+.-..+ +++-+.||.+.|=.+....+
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~~k 365 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRFLK 365 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChhhh
Confidence 99999987776 47888999998877665443
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=4.3e-17 Score=109.73 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=113.2
Q ss_pred eEEEEeCCCcEEEEEcCCCceee----------eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc--c-e
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQT----------RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS--D-R 75 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~-~ 75 (188)
+|++|..+|.+.+||+.++..+. ....|..+|.++.+.+.-..=++++.+..+..|.++.....+ . .
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 35677789999999999874333 233688899999998765555677777788899886431111 1 1
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
+.- ....+..+ .-||++.+++++.|+.|++|.-++..++..++.|+. .|++++|+|+...++.++.|+.|.+|++
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222 23346666 789999999999999999999999999999999986 8999999999999999999999999986
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.6e-17 Score=118.68 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=124.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc-CCce
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNSV 84 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~v 84 (188)
...++++|+..+.|+|||++...+.+.+++|...|+++.++-...+|++++..|.|.+-.+.+ +.....+.. . ...+
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~-~sgqsv 167 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTI-DSGQSV 167 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccceec-CCCCeE
Confidence 457899999999999999998888888999999999999999999999999999999999876 454555554 3 3445
Q ss_pred eEE-eecCCC-EEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCccCCC
Q 029743 85 DAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 85 ~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+-+ ++|..+ +|.+++.+|.|.+||+....++..+ ..|+ ++...++|+|.. ..|++.+.|..|.+||++......
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs-AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS-APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc-CCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 566 788666 5667889999999999887777665 4564 489999999955 567899999999999999765443
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=110.54 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=120.1
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccccceeee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+| +.+.++.++....+-||.-....++..+-+|.+.|+.+.|.++|+.|++|.. +-.|..||++..+.++-.+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 46888 5668999999999999998888999999999999999999999999999876 568999999987788877777
Q ss_pred ccCC-ceeEE-e--ecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 79 LSPN-SVDAL-L--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 79 ~~~~-~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
|.. .-..+ | .|+++.|++|+.+|.|++||++. +..+..+..++. .++.++++|--+++++++..
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 655 22233 5 78999999999999999999987 777777777767 79999999998888877644
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=114.95 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=128.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC--CceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcc-ccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~ 76 (188)
|.|+|....|++++.|++++||.+.. ...++.+.-...+|.+.+|.|+|. .+++++...-++.||+.+.+ ..+..+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 46999999999999999999998864 345555555678999999999998 89999999999999997532 223333
Q ss_pred eeccCCc-eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 77 VGLSPNS-VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 77 ~~~~~~~-v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+ +... +... .+|++++|+..+..|.|.+....+++.+..+... + .|..++|+.+++.|++++.+|.|.+||++.
T Consensus 299 ~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G-~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 299 YG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-G-VVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred CC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-c-EEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 34 3322 2223 4899999999999999999999999999888766 4 799999999999999999999999999998
Q ss_pred ccCCCCC
Q 029743 155 ILKGSGN 161 (188)
Q Consensus 155 ~~~~~~~ 161 (188)
.......
T Consensus 376 ~~~~~rf 382 (514)
T KOG2055|consen 376 NSCLHRF 382 (514)
T ss_pred cceEEEE
Confidence 8655443
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.73 E-value=1.5e-16 Score=119.23 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=120.9
Q ss_pred CeeecccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc---c
Q 029743 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---C 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~ 72 (188)
++.||+++++|+++.. ..|++|+..+-...+.+++|.-.|+.++|+||+++|++.+.|+++.+|....... .
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 4678999999999764 4689999988877778999999999999999999999999999999999853211 1
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC--eeeee--cccCCCcceeEEEeeCC-----CCEEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLALSHD-----RKFLGSIS 142 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~--~~~~~--~~~~~~~~v~~~~~~~~-----~~~l~~~~ 142 (188)
....+. |..-|... |+|++.++++++.|.+|++|..... +.+.. ...+.. .|+.+++.|- +..++.|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 223556 88888888 8999999999999999999998766 33333 223434 7999998872 22567777
Q ss_pred CCCcEEEEeCC
Q 029743 143 HDSMLKLWDLD 153 (188)
Q Consensus 143 ~d~~i~iwd~~ 153 (188)
..|.|.+|...
T Consensus 689 e~GeI~l~~~~ 699 (764)
T KOG1063|consen 689 EKGEIVLWRRK 699 (764)
T ss_pred cccEEEEEecc
Confidence 88999999966
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.1e-16 Score=115.57 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=123.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc-ceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~ 79 (188)
++|++ +..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+..++...+.-.. +.+..
T Consensus 75 L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r- 152 (691)
T KOG2048|consen 75 LAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR- 152 (691)
T ss_pred EEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-
Confidence 46774 5678888889999999999999988888888999999999999999999999977777765422111 22333
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-------ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.++.+.++ |+|++..++.|+.||.|++||..++..+... ......-|+++.|-.++ .|++|...|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEc
Confidence 56789999 8999999999999999999999988765521 11112257888887655 788999999999999
Q ss_pred CCCccCCCC
Q 029743 152 LDDILKGSG 160 (188)
Q Consensus 152 ~~~~~~~~~ 160 (188)
...+...+.
T Consensus 232 ~~~gTLiqS 240 (691)
T KOG2048|consen 232 SIFGTLIQS 240 (691)
T ss_pred ccCcchhhh
Confidence 998875543
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3e-16 Score=107.05 Aligned_cols=149 Identities=15% Similarity=0.250 Sum_probs=118.3
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCc---eeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+.+++.+.+-|.+..|||++.+. ....+.+|...|..++|...+ +.|++.+.||.+++||++. .+....+-. ..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~-leHSTIIYE-~p 239 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS-LEHSTIIYE-DP 239 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc-cccceEEec-CC
Confidence 56889999999999999999863 355677899999999999865 6788999999999999986 344444332 22
Q ss_pred ---CceeEE-eec-CCCEEEEec-CCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCC-CCEEEEEeCCCcEEEEeCC
Q 029743 82 ---NSVDAL-LKL-DEDRVITGS-ENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 82 ---~~v~~~-~~~-~~~~l~~~~-~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 153 (188)
.+...+ +++ |-+++++-. ....|.+.|++. ..++..+++|.. .|+.++|.|. ...|++++.|.++.+||+.
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecc
Confidence 344555 554 566777655 456799999985 568899999966 8999999995 4689999999999999999
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
....
T Consensus 319 q~~~ 322 (364)
T KOG0290|consen 319 QMPR 322 (364)
T ss_pred cccc
Confidence 7665
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=8.4e-17 Score=114.89 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=116.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---cee------------------eeecccccceEEEEEEeCC-CEEEEecCCCeEEE
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---TVQ------------------TRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLL 63 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---~~~------------------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~ 63 (188)
.|+++|.|+.+..|.|||+.-- .+. ..-.+|+..|.++.|+..- +.|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999997521 000 0122688889999998744 67899999999999
Q ss_pred EEeCCcccccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCC-EEE
Q 029743 64 YSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRK-FLG 139 (188)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 139 (188)
||+.. +.+..++.. |...|.++ |+| ...+|++|+.|++|.+.|+|.. ..-..++.. + .|..++|.|... .++
T Consensus 271 WD~~~-g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g-~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-G-EVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCC-CCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-c-ceEEEEecCCCceeEE
Confidence 99987 688888888 99999999 876 6779999999999999999942 222333333 3 689999999765 456
Q ss_pred EEeCCCcEEEEeCCCcc
Q 029743 140 SISHDSMLKLWDLDDIL 156 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (188)
++..||.|+-+|+++..
T Consensus 347 ~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPG 363 (463)
T ss_pred EecCCceEEeeecCCCC
Confidence 67789999999999874
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=1.3e-15 Score=109.04 Aligned_cols=144 Identities=18% Similarity=0.288 Sum_probs=110.4
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
++.+++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||... ++....+.. +.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCC-cc
Confidence 356888899999999999998888887754 346789999999876 5667889999999975 344444544 433 34
Q ss_pred EE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC-cEEEEeCCCcc
Q 029743 86 AL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDIL 156 (188)
Q Consensus 86 ~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~ 156 (188)
.+ ++|+++.++++ ..++.|++||+++++.+..+..+ . .+.+++|+|+++++++++.++ .+.+||.++..
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 45 79999977655 56899999999988877776543 2 468899999999998888764 56778987654
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=2.3e-16 Score=117.27 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=116.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeee--ecccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcc--------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK-------- 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~-------- 70 (188)
.|-|....|++++.|.+++.||++..++... +.+|...|.+++|.|. ...|++|+.||.|.|||++..+
T Consensus 107 ~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 107 KWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred ccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 4667666789999999999999999887766 7799999999999994 5788899999999999996421
Q ss_pred -----------ccccee-------eeccC----CceeEEeecCCCEEEEecC-CCeEEEEecccCeeee--------ecc
Q 029743 71 -----------DCSDRF-------VGLSP----NSVDALLKLDEDRVITGSE-NGLISLVGILPNRIIQ--------PIA 119 (188)
Q Consensus 71 -----------~~~~~~-------~~~~~----~~v~~~~~~~~~~l~~~~~-d~~v~~~d~~~~~~~~--------~~~ 119 (188)
.+.+.+ .. +. +.|+.++..|...|++++. |+.|+|||++...... .+.
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 000000 01 11 1244557788888998886 9999999998654321 122
Q ss_pred cCC--CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 120 EHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 120 ~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
.+. ...+.++.....|.+|.+.+.|+.|++|++......+..
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~ 309 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA 309 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh
Confidence 221 124677777778899888888999999999987655543
No 161
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7.2e-16 Score=110.80 Aligned_cols=152 Identities=13% Similarity=0.207 Sum_probs=124.7
Q ss_pred eeecccC-eEEEEeCCCcEEEEEcCCCceeee--ecccc-cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTR--SEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+|.|+|. .+++++....++.||+.+.+..+. +.++. ..+.....++++++|+..+..|.|.+....+ ++.+..++
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-~eli~s~K 342 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-KELITSFK 342 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-hhhhheee
Confidence 6899999 888989989999999988755432 22333 3567788899999999999999999999876 67777776
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
..+.+..+ |+.+++.|++.+.+|.|++||++...++..+.....-.-++++.++++.+||+|+..|.|.|||.++-.
T Consensus 343 --ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 343 --IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred --eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 46778888 899999999999999999999999999888865532234567778999999999999999999976543
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=3.3e-16 Score=116.45 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=113.7
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCce------eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce--ee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FV 77 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~ 77 (188)
....|+.+..+|.|.++|...... +.....|...|..+.|.|....|++++.|.++++||+.. ..+... +.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecceeec
Confidence 356789999999999999865321 244568999999999999667899999999999999986 455555 78
Q ss_pred eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCe--------------------e-------eeecccCCCcceeE
Q 029743 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR--------------------I-------IQPIAEHSEYPIES 128 (188)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~--------------------~-------~~~~~~~~~~~v~~ 128 (188)
+ |...+.++ |.| +...+++|+.||.|.|||++-.. + +....++.. .|.+
T Consensus 142 G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~s 219 (720)
T KOG0321|consen 142 G-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFS 219 (720)
T ss_pred c-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceee
Confidence 8 99999999 777 45588999999999999986321 0 011112222 3444
Q ss_pred ---EEeeCCCCEEEEEeC-CCcEEEEeCCCccCC
Q 029743 129 ---LALSHDRKFLGSISH-DSMLKLWDLDDILKG 158 (188)
Q Consensus 129 ---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~ 158 (188)
+.+..|...|++++. |+.|+|||+++....
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 455567888998886 999999999987643
No 163
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=7.3e-16 Score=108.70 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=125.8
Q ss_pred cCeEEEEeCC--CcEEEEEcCCCceeeeeccc---------ccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCccccc
Q 029743 7 AMKLLGTSGD--GTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 7 ~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
...+++|+.. ..+.|||++..+.+..-+.- +-.++++.|-+. ...|++++.-+++++||.+.+.+++
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence 3456778888 88999999887655543321 123567888886 7899999999999999999888999
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
..+.- ...++.++ ..|.|+++++|...+.+..||++.++.... +.+-.+ .|+++..+|..++|++++-|..|+|+|
T Consensus 241 ~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 241 AQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred eEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEee
Confidence 99987 88889999 789999999999999999999999998776 777766 899999999999999999999999999
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+++..
T Consensus 319 ~ktrk 323 (412)
T KOG3881|consen 319 IKTRK 323 (412)
T ss_pred cccch
Confidence 99854
No 164
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4e-16 Score=112.04 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=120.3
Q ss_pred CeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 8 MKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 8 ~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++++++.. -..|.+|.+........-.--+++|.+++-+|.|.+|+.|+..+.+++|.+.+ +..+..+.. |-..++|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-HYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-HYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh-hccceeE
Confidence 45555543 35778888865443332223567899999999999999999999999999987 688888888 9999999
Q ss_pred E-eecCCCEEEEecCCCeEEEEecc---------cCeeeeecccCCCcceeEEEeeCC--CCEEEEEeCCCcEEEEeCCC
Q 029743 87 L-LKLDEDRVITGSENGLISLVGIL---------PNRIIQPIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~~---------~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~ 154 (188)
+ |+-||.++++|+.||.|.+|.+- +-+++..+..|.- +|+++...+- ..+|++++.|.++++||+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 9 99999999999999999999873 3457788888865 8999988764 45899999999999999998
Q ss_pred ccC
Q 029743 155 ILK 157 (188)
Q Consensus 155 ~~~ 157 (188)
+..
T Consensus 208 g~L 210 (476)
T KOG0646|consen 208 GVL 210 (476)
T ss_pred cee
Confidence 753
No 165
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=8.6e-16 Score=105.95 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=122.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--cccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~ 75 (188)
.+|++|+..+|.+.....|.||..... +...++..|...|++++|+|..+.|++++.|..-++|....++ .+...
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 379999999999999999999987654 4667888999999999999999999999999999999984332 22333
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee---eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+.. +...++++ |+|.++.+++|+....|.||-....+- .+.+...-...|.++.|+|++-.|++|+.|+..+||.
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 444 77889999 999999999999999999998865431 1122222123799999999999999999999999986
Q ss_pred C
Q 029743 152 L 152 (188)
Q Consensus 152 ~ 152 (188)
.
T Consensus 175 a 175 (361)
T KOG1523|consen 175 A 175 (361)
T ss_pred E
Confidence 4
No 166
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=1.8e-15 Score=110.01 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=118.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.+|+.+++++++.|+.+++|+ ..+++.... -..++.++.|+|.| .++.|...|...+.|..+ +.+-++.. .
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d 446 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-D 446 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-c
Confidence 35678899999999999999999 555555443 45688999999999 999999999999999875 33334444 5
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
..++.++ |+|+|.+|+.|+.|+.|++|-+.. +.....+..+.+.+|+.+.|++|+++|.+.+.|-.|..|.
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 7788999 899999999999999999999864 4444444444446899999999999999999999999993
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.1e-17 Score=126.84 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=120.1
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
+.|++. +++||+|+.+|.|.|||+...+...... ...+.|.+++|+. ....|++++.+|.+.+||++.. +.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccc
Confidence 468885 5599999999999999998755443332 3467899999987 4467888999999999999864 444445
Q ss_pred eeccCC--ceeEE-eecCC-CEEEEecCCC---eEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcE
Q 029743 77 VGLSPN--SVDAL-LKLDE-DRVITGSENG---LISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSML 147 (188)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~-~~l~~~~~d~---~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 147 (188)
.. +.. .+..+ |+|+. ..+++++.|. .|.+||+|. ..+++.+++|.. .|.++.|++.+ .+|++++.|+.|
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCe
Confidence 44 333 34556 89965 4667776554 499999986 457888889976 79999999966 788999999999
Q ss_pred EEEeCCCccCCCCC
Q 029743 148 KLWDLDDILKGSGN 161 (188)
Q Consensus 148 ~iwd~~~~~~~~~~ 161 (188)
.+|+.++++.....
T Consensus 279 i~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGEL 292 (1049)
T ss_pred eEecCCCceEeeec
Confidence 99999997654433
No 168
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.9e-15 Score=102.29 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=111.4
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---------ceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc----
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~---- 70 (188)
-|+.+|+++.|+++.||.-... ....++......|+.+.|.| -|-.+++++.||.++||+.....
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 4899999999999999985311 22345556778899999999 56789999999999999864220
Q ss_pred --------------------------------------------------------------cccceeeeccCCceeEE-
Q 029743 71 --------------------------------------------------------------DCSDRFVGLSPNSVDAL- 87 (188)
Q Consensus 71 --------------------------------------------------------------~~~~~~~~~~~~~v~~~- 87 (188)
..+..+.+ |+.+|+.+
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~ 230 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDIS 230 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeee
Confidence 00111234 77889999
Q ss_pred eecC----CCEEEEecCCCeEEEEecccC--------------------eeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 88 LKLD----EDRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 88 ~~~~----~~~l~~~~~d~~v~~~d~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
|.|+ -.+|++++.|| |+||.+... +.+..+..|.+ +|+.+.|+-.|..|++.+.
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 7774 34689999999 999998731 13445677865 8999999999999999999
Q ss_pred CCcEEEEeCCC
Q 029743 144 DSMLKLWDLDD 154 (188)
Q Consensus 144 d~~i~iwd~~~ 154 (188)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999997653
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.68 E-value=2.4e-15 Score=109.34 Aligned_cols=152 Identities=11% Similarity=0.131 Sum_probs=123.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.++....+||+++..|.|.|..+.++.....+... ...|.-+.++|..+ +|.+++.+|.|.+||+.. ..+...+...
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~~ 206 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHASEA 206 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC-CCcccchhhh
Confidence 45667789999999999999999998776666633 34566899999665 466899999999999975 4444444333
Q ss_pred cCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|..+...+ |+| +..+|++.+.|..|.+||++.......+... . +...++|.++|.+|+.|...|.|..||++...
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~-Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-H-PLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-C-CcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 88888888 788 5567888999999999999987777776654 2 78999999999999999999999999999765
No 170
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=110.68 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=82.0
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
...|...+|+|||++|++.+.||.++|||+.. ...+..++. .-+...|+ |+|||+|+++|+.|..|.||.+...+.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 34688999999999999999999999999986 455555555 55678888 8999999999999999999999999999
Q ss_pred eecccCCCcceeEEEee
Q 029743 116 QPIAEHSEYPIESLALS 132 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~ 132 (188)
..-++|+. .|+.++|.
T Consensus 368 ARGqGHkS-WVs~VaFD 383 (636)
T KOG2394|consen 368 ARGQGHKS-WVSVVAFD 383 (636)
T ss_pred Eecccccc-ceeeEeec
Confidence 98899976 89999998
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.3e-15 Score=103.28 Aligned_cols=157 Identities=17% Similarity=0.294 Sum_probs=117.8
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeee--cccc-cceEEEEEEeCCCEEEEecC----CCeEEEEEeCCcccccceeee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSE-EELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.+..+.+++.||+|++||++.......+ ..++ .+..+++.+-.++.+++|.. +-.+.+||++...+.+..+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 4567899999999999999875443333 3444 45677777667788887754 568999999987665666655
Q ss_pred ccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCe----eeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEe
Q 029743 79 LSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 ~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (188)
.|...|+++ |+| +.++|++|+.||.|-|||+.... .+.++. + +..|..+.|..++ +.+.+-+......+|+
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 599999999 988 66799999999999999987532 333333 3 3269999999876 4577778899999999
Q ss_pred CCCccCCCCCCCc
Q 029743 152 LDDILKGSGNNIS 164 (188)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (188)
++.+......+.+
T Consensus 241 le~~~~~~~~~~~ 253 (376)
T KOG1188|consen 241 LEDGSEETWLENP 253 (376)
T ss_pred ccCCChhhcccCc
Confidence 9988755444444
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.7e-15 Score=103.51 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=93.7
Q ss_pred eEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec
Q 029743 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
..++.|++.|.+|++|+.||.|.+||+.+ ....+.+.. |..+|.++ ||++|+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 78999999999999999999999999987 467778888 99999999 8999999999999999999999999999998
Q ss_pred ccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeCCC
Q 029743 119 AEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 119 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (188)
.-.+ +|+.+.|+|..+ ..++.-.+..-.+-++..
T Consensus 104 rf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 104 RFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred EccC--ccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 8763 899999999543 333333444455555554
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=6.4e-16 Score=116.08 Aligned_cols=145 Identities=12% Similarity=0.190 Sum_probs=118.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|-|||..|+.+.. ..+.+||...|..++.+++|...|.+++|+.+|+.+++|+.|..|.+|.-... ..++-.|
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE----G~LkYSH 92 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE----GILKYSH 92 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc----ceeeecc
Confidence 578999999888654 67999999999999999999999999999999999999999999999986532 2233228
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...+.|+ |+|-...|++++... .-+|........ ..+. ...+.+.+|..||++++.|-.+|+|.+-+-..
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~-K~ks--s~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS-KHKS--SSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH-hhhh--heeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 8999999 999999999888653 568886544332 2222 23688999999999999999999999986543
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=2.1e-14 Score=106.22 Aligned_cols=154 Identities=26% Similarity=0.400 Sum_probs=124.9
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccc-eee
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~-~~~ 77 (188)
+.|+|+++.++.++. ++.+++|++..+..+..+.+|...+.+++|+|++. .+++++.|+.+++||... +.... .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecC
Confidence 468999998888885 99999999998888888888999999999999988 555559999999998874 45555 466
Q ss_pred eccCCceeEEeecCCCEEEEecCCCeEEEEecccCee-eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+ |.......|+|++.++++++.++.+++|+++.... +..+..|.. .+.++.|.|++..+++++.|+.+.+|++.+..
T Consensus 240 ~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 240 G-HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred C-CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 6 66554114889988899999999999999986654 444455644 89999999988888888888889999888765
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 318 ~ 318 (466)
T COG2319 318 L 318 (466)
T ss_pred e
Confidence 3
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8.1e-16 Score=113.85 Aligned_cols=147 Identities=13% Similarity=0.196 Sum_probs=126.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|+|...+|++++. ..|+|||+.....++.+......|..++.+|.|..|+.++.|+.+..+|++....+.+++.- |.
T Consensus 573 ~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~ 650 (733)
T KOG0650|consen 573 KFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HE 650 (733)
T ss_pred EecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hh
Confidence 58888888888776 88999999988877777766778999999999999999999999999999876678888888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecc------cC---eeeeecccCCC---cceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~------~~---~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
..++.+ |++.-.++++|+.||++.|+.-. .. -++..+.+|.. ..|....|||...+|.+++.||+|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 999999 89999999999999999988532 11 25667788753 1377888999999999999999999
Q ss_pred EE
Q 029743 149 LW 150 (188)
Q Consensus 149 iw 150 (188)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 98
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=8.9e-16 Score=120.44 Aligned_cols=155 Identities=10% Similarity=0.131 Sum_probs=127.4
Q ss_pred eeecc-cCeEEEEeCCCcEEEEEcCCCceeeeeccccc--ceEEEEEEeCC-CEEEEecCCC---eEEEEEeCCcccccc
Q 029743 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNG-RKVVCGSQSG---TVLLYSWGYFKDCSD 74 (188)
Q Consensus 2 ~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~~~~~~ 74 (188)
+|+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+. ..+++++.|. .|.+||++.....++
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 34442 35578889999999999998877666654443 47899999976 5666666653 699999998788999
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEe
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWD 151 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 151 (188)
.+++ |...+.++ |.+ |..++++++.|+.|.+|+..+++.+..+..... .+..+.|+|... .++.++.||.|.||.
T Consensus 248 ~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 248 ILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred hhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeee
Confidence 9999 99999999 866 558999999999999999999999999987645 899999999766 778888999999999
Q ss_pred CCCccCC
Q 029743 152 LDDILKG 158 (188)
Q Consensus 152 ~~~~~~~ 158 (188)
+......
T Consensus 326 l~~~~~~ 332 (1049)
T KOG0307|consen 326 LQGTDTD 332 (1049)
T ss_pred eecCCcc
Confidence 9876643
No 177
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=3.7e-15 Score=116.03 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=130.7
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
++++.-++++|+.-+.|.+|.....+....+.+|.+.+..+.|+.+|+++++.+.|.++++|++++.........+ |..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4566778899999999999998754444467899999999999999999999999999999999875444446677 888
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
.+..+ ++|+ ++++++.|-+.++|+.. +..+..+..|.+..++.++..++...+++++.|+.+++|++.....+..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 88888 7887 99999999999999754 5666688888877899999999999999999999999999987665443
No 178
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.6e-15 Score=109.25 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=127.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecc--------------------------------------cccceEEE
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------------------------------------SEEELTSV 43 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--------------------------------------~~~~v~~~ 43 (188)
.++.+|+.|+.|+.-|.|..+|..++++...+.. ....|..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 5677999999999999999999887765443210 12345566
Q ss_pred EEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC
Q 029743 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (188)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~ 122 (188)
.|-|.--+|++++..|.++.-|+.. +..+..+.. ..+.+..+ -+|-...+-+|..+|+|.+|.....+++..+-.|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVST-GKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeech-hhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 6777777888999999999999987 577777765 66677777 48988899999999999999999999998998897
Q ss_pred CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 123 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+ +|.++++.++|+++++++.|..++|||+++......
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred C-CcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 7 999999999999999999999999999998765443
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.9e-14 Score=93.62 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=113.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
-..|..+-+++++.|+.++-||+++|+..+.+++|.+.+.++.-......+++|+.||++++||.++ +++++.+.. .+
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~-yk 198 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEP-YK 198 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEecc-cc
Confidence 3567777788888999999999999999999999999999999866667889999999999999987 466666543 22
Q ss_pred C----------ceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 82 N----------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 82 ~----------~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
. .|.++ .-+...+++|+. ..+.+|++++.++...+.-. . ++..+.|.. ..+++++..+.|.-|.
T Consensus 199 ~~~~lRp~~g~wigal-a~~edWlvCGgG-p~lslwhLrsse~t~vfpip-a-~v~~v~F~~--d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGAL-AVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP-A-RVHLVDFVD--DCVLIGGEGNHVQSYT 272 (325)
T ss_pred ChhhcCcccCceeEEE-eccCceEEecCC-CceeEEeccCCCceEEEecc-c-ceeEeeeec--ceEEEeccccceeeee
Confidence 1 12233 334456666654 45889999998888777665 3 688888864 4577788888899998
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+....
T Consensus 273 l~Gvl 277 (325)
T KOG0649|consen 273 LNGVL 277 (325)
T ss_pred eccEE
Confidence 87643
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.9e-15 Score=110.17 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=119.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCC---------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGY--------- 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~--------- 68 (188)
|.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-| +.+.+++|..|..|+++|+..
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 5799999999999999999999998777777665 8999999999999 557889999999999999973
Q ss_pred cccccceeeeccCCceeEEe-ecCC-CEEEEecCCCeEEEEecccCeeee----------ecccCCCcceeEEEeeCCC-
Q 029743 69 FKDCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQ----------PIAEHSEYPIESLALSHDR- 135 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~d~~v~~~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~~- 135 (188)
.......+.. |...|..+. .|++ ..+.+++.||+|+.||++...... .+...-- ...++.++|..
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li-elk~ltisp~rp 213 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI-ELKCLTISPSRP 213 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh-eeeeeeecCCCC
Confidence 1234455666 777788884 6776 688999999999999998632111 1111111 35688999965
Q ss_pred CEEEEEeCCCcEEEEeCCCc
Q 029743 136 KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+|++|+.|-..++||.+..
T Consensus 214 ~~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 214 YYLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred ceEEecCCCchhhhhhhhhh
Confidence 46789999999999996543
No 181
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.3e-14 Score=106.87 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=100.2
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|||||+.|+.++.+ ..|++||+.+++.... .........++|+|||+.|+.+. .++.+.||.++........+
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 4799999999987654 4699999988754322 21222345789999999888764 67776666543323444556
Q ss_pred eeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.. +...+... |+|+|+.++..+ .++...||++... .....+ .+. . ..+.|+|+|++|+..+.++ +.+||+.
T Consensus 288 t~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~--~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~ 361 (429)
T PRK01742 288 TS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR--G-YSAQISADGKTLVMINGDN-VVKQDLT 361 (429)
T ss_pred cc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--C-CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence 65 55556666 899999877554 5677888876532 222223 332 2 4578999999998877654 6669988
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
++..
T Consensus 362 ~g~~ 365 (429)
T PRK01742 362 SGST 365 (429)
T ss_pred CCCe
Confidence 7643
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=2e-13 Score=95.98 Aligned_cols=153 Identities=13% Similarity=0.086 Sum_probs=111.2
Q ss_pred eeecc--cCeEEEEe--CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCe-EEEEEeCCccccccee
Q 029743 2 TFAAD--AMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (188)
Q Consensus 2 ~~s~~--~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~ 76 (188)
++||+ +.+|+.=+ ..|.|++||..+-+....+..|.+++.+++|+++|.+|++++..|+ |+++.+.. ++.+..+
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeee
Confidence 45554 44666543 2589999999999999999999999999999999999999999996 78999976 5666666
Q ss_pred ee-ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe------e---------------------e----------ee
Q 029743 77 VG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR------I---------------------I----------QP 117 (188)
Q Consensus 77 ~~-~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~------~---------------------~----------~~ 117 (188)
+. .....+.++ |+|++++|++.+..++|++|.+.... + + ..
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt 292 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFAT 292 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeE
Confidence 53 122346777 89999999999999999999885311 0 0 00
Q ss_pred cccCCCcceeEEEee--CCCCEEEEEeCCCcEEEEeCCCc
Q 029743 118 IAEHSEYPIESLALS--HDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 118 ~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
........-..+.+. +..+++..++.||.++.|.+.-.
T Consensus 293 ~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 293 AKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 000101011223333 46778889999999999988764
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.61 E-value=1.7e-13 Score=99.78 Aligned_cols=151 Identities=11% Similarity=0.130 Sum_probs=103.6
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCC-Cce--eeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccccc--
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCS-- 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~-- 73 (188)
|+++|++++|++++ .++.|.+|++.. +.. ..... .......++++|+++.+++++. ++.|.+|+++..+...
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 47899999987765 478899999863 332 22222 2345678999999998888764 7899999997433222
Q ss_pred -ceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeee-----ecccCCCcceeEEEeeCCCCEEEEEeC-C
Q 029743 74 -DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISH-D 144 (188)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 144 (188)
..+.+ ......+ ++|+++++++++ .++.|.+||+.+...+. ......+.....++|+|++++++++.. +
T Consensus 119 ~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 22222 2234455 899999886655 56899999997633221 111111224678999999999987775 8
Q ss_pred CcEEEEeCCC
Q 029743 145 SMLKLWDLDD 154 (188)
Q Consensus 145 ~~i~iwd~~~ 154 (188)
+.|.+|+++.
T Consensus 197 ~~v~v~~~~~ 206 (330)
T PRK11028 197 SSVDVWQLKD 206 (330)
T ss_pred CEEEEEEEeC
Confidence 9999999973
No 184
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.61 E-value=1.7e-13 Score=100.02 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=119.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+|.| .+|.|...|...+.|.++...+..-.. ..++++++|+|+|.+|+.|+.|+.|++|.+...+........-+
T Consensus 413 ~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred eeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 3689999 999999999999999998666554444 88999999999999999999999999999987666655543315
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccC-----------------------------------------------
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN----------------------------------------------- 112 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~----------------------------------------------- 112 (188)
..+++.+ |++|++++.+-+.|..|..|....-
T Consensus 491 gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 491 GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGD 570 (626)
T ss_pred CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccc
Confidence 5789999 9999999999999999988853110
Q ss_pred ----------------eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 113 ----------------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 113 ----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+...+.+|+. .|.+++|..+...|++.+.|..|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~he~~ghs~-~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSHEYGGHSS-HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccceeeccccc-eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 01122345654 7999999988888888889999999986
No 185
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.8e-13 Score=102.84 Aligned_cols=154 Identities=17% Similarity=0.100 Sum_probs=102.4
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
.+|||||+.|+..+.. ..|++||+.+++... +......+..+.|+|||+.|+ +.+.++...+|.++........+
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 3699999999887643 459999999886543 333345567899999998876 56778877777665333444555
Q ss_pred eeccCCceeEE-eecCCCEEEEecC-CCeEEEEec--ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cEEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGI--LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i 149 (188)
.. +....... |+|||+.++..+. ++...+|.+ .++.... +..... ......|+|+|++|+..+.++ .|.+
T Consensus 280 t~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 280 TQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS-YNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC-CcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 54 44444445 8999998876654 455555554 4444322 222212 344678999999998776554 6999
Q ss_pred EeCCCccCC
Q 029743 150 WDLDDILKG 158 (188)
Q Consensus 150 wd~~~~~~~ 158 (188)
||+.+....
T Consensus 357 ~d~~~g~~~ 365 (427)
T PRK02889 357 QDLATGQVT 365 (427)
T ss_pred EECCCCCeE
Confidence 999876543
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.3e-14 Score=105.35 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=101.9
Q ss_pred CeeecccCeEEEEe-CCCcEEEE--EcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|||+.|+.+. .++.+.|| |+.++.. ..+..+...+..+.|+|+|+.|+.. ..++...+|+++..+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 37999999988765 57765554 6665554 4455566778899999999977654 457888899886533333333
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
. +.. ... ++|+|++++..+.++ +.+||+.+++........ ....+.|+|+|++|+.++.++.+.+|++.
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 333 334 899999998887765 556999887754332222 24567899999999999989888888764
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.59 E-value=2.8e-13 Score=100.25 Aligned_cols=150 Identities=26% Similarity=0.439 Sum_probs=123.1
Q ss_pred ecccC-eEEEEeC-CCcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccccceeeec
Q 029743 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 4 s~~~~-~l~~~~~-d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++++. .++..+. ++.+.+|+... ......+..|...|..++|+|+++.++.++. ++.+++|++.. ...+..+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 56666 4444444 89999999988 6777788889999999999999998888886 99999999975 567777888
Q ss_pred cCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|...+.++ ++|++. .+++++.|+.|++||...+.... .+..|.. .. ...|++++..+++++.|+.+++|++....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 88999999 789988 55555899999999988777777 6777755 33 33799999888899999999999998665
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 275 ~ 275 (466)
T COG2319 275 S 275 (466)
T ss_pred c
Confidence 4
No 188
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=3.5e-14 Score=104.14 Aligned_cols=150 Identities=13% Similarity=0.242 Sum_probs=109.1
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeec----ccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCc----------
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYF---------- 69 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~---------- 69 (188)
|.+--|+.|-..|.|.+.|....+..+.+. -....|+++.|-|.+ ..+..+-.+|.+++||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 345557777777888888866532222111 123679999999954 56667778899999976321
Q ss_pred -----------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEe
Q 029743 70 -----------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (188)
Q Consensus 70 -----------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 131 (188)
..++..+.. ....+... |+|||++|++.+.||.++|||..+.+.+..++.--+ ...|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEE
Confidence 011112222 23455666 799999999999999999999998887766665545 6899999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+|||++|++|++|..|.||.+...+
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccce
Confidence 9999999999999999999987654
No 189
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=4.7e-13 Score=92.52 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=106.3
Q ss_pred eEEEEeCCCcEEEEEcC-CCceeeeecccc--cceEEEEEEeCCCEEEE-ecCCCeEEEEEeCCccc-ccceeeeccCCc
Q 029743 9 KLLGTSGDGTLSVCNLR-KNTVQTRSEFSE--EELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKD-CSDRFVGLSPNS 83 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~ 83 (188)
.+++. ..+.|+||... +.+.++.+.... ..+.+++-..+...|+. |-.-|+|++-|+..... .-..+.. |...
T Consensus 106 riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s~ 183 (346)
T KOG2111|consen 106 RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDSD 183 (346)
T ss_pred eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccCc
Confidence 34443 34788999887 345555554222 22223222223344443 44568999999975322 2356677 9999
Q ss_pred eeEE-eecCCCEEEEecCCCe-EEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 84 VDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|.|+ .+.+|..+|+++..|+ |+|||..+|..+..++... .+.|++++|+|+..+|++++..|+|+||.++....
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 9999 6999999999999987 8999999999998885432 34799999999999999999999999999987543
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=2.1e-14 Score=105.49 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=120.7
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
...++.++.||.+.|.+ +.++..+.+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. +....++.. ...+|+|
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q-~~~~v~c 150 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQ-NEESIRC 150 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhh-cCceeEE
Confidence 35688889999999988 5677778888999999999999999999999999999999853 444455555 7789999
Q ss_pred E-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+ |.|+..-++.+.. +.+.+=.+.....+...++|.+ -|.++.|++....+++|++|-..++||-........
T Consensus 151 ~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S 223 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS 223 (737)
T ss_pred EEECCCCCceEEecC-CeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccCcccccC
Confidence 9 8887776555443 3466777777777778899965 899999999999999999999999999876654433
No 191
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.58 E-value=1.7e-14 Score=108.36 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=103.3
Q ss_pred eecccccceEEEEEEeCCCEEEEecCCC-----eEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEE
Q 029743 32 RSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~ 105 (188)
.+.+|...|.+++.+|+++.+++++... .|++|+..+. ...+.+.+ |.-.|+.+ |+|||++|++.+.|.++.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc-cceEEEEEEECCCCcEEEEeecCceEE
Confidence 4568999999999999999999988753 6999998764 55567888 99999999 999999999999999999
Q ss_pred EEecccCe----eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 106 LVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 106 ~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+|...... .....+.|.. -|++..|+|++.++++++.|.+|++|.....
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeeecccchhhhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99975432 1223567865 8999999999999999999999999998876
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=2.3e-15 Score=115.28 Aligned_cols=154 Identities=12% Similarity=0.174 Sum_probs=126.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|...|.++++|+.|..++||...++.++..+.+|.+.++.++.+.+..++++++.|..|++|.+.. +.++..+.+ |+
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-cc
Confidence 4677899999999999999999999999999999999999999999999999999999999999986 688999999 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecc--------------------------------------------------
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL-------------------------------------------------- 110 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~-------------------------------------------------- 110 (188)
+.|+++ |+|-. +.+.||++++||.+
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~ 350 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW 350 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence 999999 88753 56677888888753
Q ss_pred ---------------------------------cCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCcc
Q 029743 111 ---------------------------------PNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 111 ---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+|.....+.+|.+ .++.+.++|-. +...+++.||...|||+..+.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 1111222234555 67888999844 455688999999999999887
Q ss_pred CCCCCC
Q 029743 157 KGSGNN 162 (188)
Q Consensus 157 ~~~~~~ 162 (188)
+.....
T Consensus 430 pik~y~ 435 (1113)
T KOG0644|consen 430 PIKHYF 435 (1113)
T ss_pred cceeee
Confidence 665543
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=9.5e-14 Score=96.02 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=120.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---- 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---- 73 (188)
++|+|..+.|++++.|..-++|....+ ++...+..++..++++.|+|.++.|++|+....|.+|-++.. +--
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdWWVsK 139 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE-NDWWVSK 139 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc-cceehhh
Confidence 579999999999999999999998443 344455568899999999999999999999999999988642 211
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecc-----c-------------CeeeeecccCCCcceeEEEeeCC
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLALSHD 134 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~ 134 (188)
.+-+. +...|.++ |+|++-+|++|+.|+..+++..- . |..+.++... ++.+..+.|+|.
T Consensus 140 hikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~s 217 (361)
T KOG1523|consen 140 HIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPS 217 (361)
T ss_pred hhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCC
Confidence 11223 56678999 89999999999999999998742 1 1123333222 347999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcc
Q 029743 135 RKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|..|+-.+.|..+.+-|.....
T Consensus 218 G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999887664
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=4.4e-13 Score=97.67 Aligned_cols=151 Identities=11% Similarity=0.184 Sum_probs=101.7
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceee-----eec-ccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcc--
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQT-----RSE-FSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFK-- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~-- 70 (188)
++++|+++++++++ .++.|.+|++.....+. ... ........++|+|++++++++.. ++.|.+|+++...
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 36899999987665 46999999997632221 011 12344678999999999988776 8899999997321
Q ss_pred -cccceeeecc------CCceeEE-eecCCCEEEEecC-CCeEEEEecccCe----eeeecccCCCcceeEEEeeCCCCE
Q 029743 71 -DCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 71 -~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
..++.+.. . ......+ ++|++++++++.. ++.|.+|++.... .+..+... . ....+.++|+|++
T Consensus 211 ~~~~~~~~~-~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~-~p~~~~~~~dg~~ 287 (330)
T PRK11028 211 IECVQTLDM-MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-T-QPRGFNIDHSGKY 287 (330)
T ss_pred EEEEEEEec-CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-c-cCCceEECCCCCE
Confidence 11222211 1 1112235 7999999998864 7899999986533 22222222 1 3568999999999
Q ss_pred EEEEeC-CCcEEEEeCCC
Q 029743 138 LGSISH-DSMLKLWDLDD 154 (188)
Q Consensus 138 l~~~~~-d~~i~iwd~~~ 154 (188)
|+++.. +++|.+|+++.
T Consensus 288 l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 288 LIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEccCCcEEEEEEcC
Confidence 987774 89999998863
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=1.2e-14 Score=104.81 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=123.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|.|-|..-+|++++..|.++--|+..|+.+..+..-.+.+..++-+|-.-.+-+|..+|+|.+|.... .+++..+.. |
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc-H 292 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC-H 292 (545)
T ss_pred hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh-c
Confidence 45778777888999999999999999999988887788899999999888999999999999999876 577777777 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.++|.++ +.++|+|+++.+.|..++|||++....+.++... - +...+++|..| +++.+....|.||.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~-~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H-PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C-Ccccccccccc--ceeeecCCeeeeeh
Confidence 9999999 7999999999999999999999988877776653 2 67889998665 44455666789994
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=1.3e-13 Score=104.64 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=116.0
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCce--eeee----cccccceEEEEEEeCCC--EEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTV--QTRS----EFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~----~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.|+| +.++++.|..+|.|.+||+..+.. ...+ ..|..+++.+.|..+.. -+++++.||.|..|+++.-..+
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 5677 577888999999999999987644 2221 26889999999987554 4999999999999988632100
Q ss_pred --------------------------------------------------------------cceeeeccCCceeEE-ee
Q 029743 73 --------------------------------------------------------------SDRFVGLSPNSVDAL-LK 89 (188)
Q Consensus 73 --------------------------------------------------------------~~~~~~~~~~~v~~~-~~ 89 (188)
...+.. |.++++++ ++
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 111122 55667777 67
Q ss_pred cCCCEEEEecCCCeEEEEecc-cCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeCCCccCCCCCCC
Q 029743 90 LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKGSGNNI 163 (188)
Q Consensus 90 ~~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (188)
|=+..++..+.|-+|+||... ...++..+..+.. .|++++|+|... .++++..||.|.+||+......+...+
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 755544444448889999877 6677777777755 699999999775 456777899999999998776665543
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=6.9e-14 Score=102.85 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=93.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|+|||.-|++++.||.|++|. ++|-...++-....+|.|++|.|+.+.++.+.. +.+.+=.+.. ...+-.++. |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA-NSKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc-ccceeEEec-cC
Confidence 5899999999999999999999 445444444445678999999998877666543 3566666654 344556777 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 134 (188)
+-+.++ |++...++++|+.|-..++||-. |..+..-..| +++|++++|+|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc
Confidence 999999 99999999999999999999964 4444443333 224444444444
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=5.9e-14 Score=99.64 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=100.1
Q ss_pred ccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcc--------cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 37 EEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK--------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 37 ~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
..++.++.|.++.. .+++|+.|..|++|.+.... ..+..+.. |...+.++ |+|+|.+|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 35789999998776 99999999999999985321 12334566 89999999 8999999999999999999
Q ss_pred Eecc--------c--------CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 107 VGIL--------P--------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 107 ~d~~--------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
|-.. + ......+.+|.. .|+.++|+|++.++++++.|+.+++||+..+.....
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEee
Confidence 9765 2 123445667766 799999999999999999999999999998876543
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.4e-14 Score=105.43 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=103.3
Q ss_pred eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eec--CCCEEEEecCCCeEEE
Q 029743 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISL 106 (188)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~v~~ 106 (188)
.+.+.+|.+-|.+++|+.+|.+|++|+.|-.+.|||.-..+.....-++ |...|.++ |-| +.+.+++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 3567899999999999999999999999999999998643333333467 99999999 855 5678999999999999
Q ss_pred Eeccc----------CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCccC
Q 029743 107 VGILP----------NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 107 ~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+|+.. ......+..|.. .|..++-.|++ ..+.++++||+|+-+|++....
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 99974 234555666766 79999999998 5678999999999999997543
No 200
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=7e-13 Score=99.67 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=100.8
Q ss_pred CeeecccCeEEEE-eCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~ 76 (188)
++|||||+.|+.. +.++ .|++||+++++.... ..+...+....|+|+|+.|+..+. ++...+|.++..+.....+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 3699999998865 3344 588999988776543 334456788999999998876655 3445555443222333444
Q ss_pred eeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCc---EEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM---LKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~i 149 (188)
.. ........ ++|+|++++..+.+ ..|.+||+.++... .+... . ......|+|||++|+.++.++. +.+
T Consensus 327 t~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 327 TW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 43 33344445 79999998776543 35888999877643 33322 1 3456789999999998887754 677
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
+++.....
T Consensus 403 ~~~~G~~~ 410 (429)
T PRK03629 403 VSTDGRFK 410 (429)
T ss_pred EECCCCCe
Confidence 77754433
No 201
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.4e-13 Score=99.85 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=103.0
Q ss_pred eeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCe--EEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~ 75 (188)
+|||||+.|+..+. +..|++||+.+++.. .+..+...+....|+|+|+.|+ +.+.++. |.+||+.. .....
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 284 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTR 284 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEE
Confidence 68999999988764 468999999887653 3444566778899999998775 5555554 66667754 33445
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~ 148 (188)
+.. +....... |+|+|+.++..+. ++ .|+++|+.++... .+..+.. .+....|+|+|+.|+..+.+ ..|.
T Consensus 285 Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 285 LTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC-cccCeEECCCCCEEEEEEcCCCceEEE
Confidence 555 55445555 8999998887663 33 5888888765543 3333323 46678999999999876543 3688
Q ss_pred EEeCCCc
Q 029743 149 LWDLDDI 155 (188)
Q Consensus 149 iwd~~~~ 155 (188)
+||+...
T Consensus 362 ~~d~~~~ 368 (435)
T PRK05137 362 VMKPDGS 368 (435)
T ss_pred EEECCCC
Confidence 8887554
No 202
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=2.6e-13 Score=91.25 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=81.7
Q ss_pred CeeecccCeEEEE--eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|+|+.+++. .....|.+||++ ++.+..+. ...+..+.|+|+|++|++++. .|.+.+||++. ...+..
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999997655 356799999997 55555554 467789999999999999865 36799999985 344444
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC------CCeEEEEecccCeeeeec
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~ 118 (188)
.. |. .+..+ |+|+|++++++.. |+.++||+.. |+.+...
T Consensus 141 ~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 33 35566 8999999998864 6778999974 6655443
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.6e-13 Score=96.59 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=118.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC------Cceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
+.||.++++|++|+.|..+++|++.. .+++.... .|...|.|++|....+.+++|..+++|.+-|+.+ ++.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceee
Confidence 46899999999999999999999863 34444443 4568999999999889999999999999999986 3444
Q ss_pred ceeee-ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-eee-ecccCCCcceeEEEeeCCCC-EEEEEeCCCcEE
Q 029743 74 DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQ-PIAEHSEYPIESLALSHDRK-FLGSISHDSMLK 148 (188)
Q Consensus 74 ~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 148 (188)
-.+.. ...+.|+.+ .+|..+.+++.+.++.|.+||.+... +.. .+.+..+...+.+.|+|... +|++.+..+-+.
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44432 034578888 69999999999999999999998543 221 12222233578899999765 557778889999
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+||++...
T Consensus 221 ~~D~R~~~ 228 (609)
T KOG4227|consen 221 VFDRRMQA 228 (609)
T ss_pred ceeecccc
Confidence 99998754
No 204
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.55 E-value=1.6e-13 Score=98.87 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=115.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce-eeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc--c-cccee
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK--D-CSDRF 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~--~-~~~~~ 76 (188)
.|+.+...++++..=|...+||.+.+.. ...+.-|...|..++++| ...+|++++.|++.+|||++.-. . +....
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 4566666777777767999999987543 555667888999999999 45788999999999999997522 1 12223
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecc----cCeeeeecccCC--Cc--ceeEEEeeCCCCEEEEEeCCCcE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL----PNRIIQPIAEHS--EY--PIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~----~~~~~~~~~~~~--~~--~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
.. |...|.+. |||.+..|++.+.|..|+|||.. ...+..++.... +. ......|.|+..++++|..-..|
T Consensus 366 ~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 366 LP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred cc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce
Confidence 34 88899999 89988889999999999999973 333444432111 11 23456899999999999998999
Q ss_pred EEEeCCCcc
Q 029743 148 KLWDLDDIL 156 (188)
Q Consensus 148 ~iwd~~~~~ 156 (188)
-|+|-+.++
T Consensus 445 Dv~~~~~~q 453 (498)
T KOG4328|consen 445 DVFDGNGGQ 453 (498)
T ss_pred eEEcCCCCE
Confidence 999988776
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.1e-13 Score=95.03 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=110.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcc--------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK-------- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~-------- 70 (188)
++|++.-..++++..|..|++|+-.. .+...++ .....|++++|.|.+ ..|++|+.. -|.+|......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence 46777666788999999999999766 4444444 345679999999955 567777765 48899875321
Q ss_pred ---cccceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 71 ---DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 71 ---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
...+.++.....+|+++ |.+||..+++++ .+..|.|||..++..+.......+ .++-+.|+||+.+|..+.-|+
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecccc
Confidence 11222222123678999 899999999988 467799999999887655522324 688999999999999999999
Q ss_pred cEEEEeCC
Q 029743 146 MLKLWDLD 153 (188)
Q Consensus 146 ~i~iwd~~ 153 (188)
..++|+..
T Consensus 261 vfrlw~e~ 268 (445)
T KOG2139|consen 261 VFRLWQEN 268 (445)
T ss_pred eeeeehhc
Confidence 99999543
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.8e-13 Score=105.18 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=114.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccc--ccceee
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~ 77 (188)
.|..+..+|++++.-..|+|||.....+...++ +....++++.-+- .|+.+++|..||.|++||.+.... .+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 455555667776667999999999887777766 3444566666443 579999999999999999986433 455556
Q ss_pred eccCCc--eeEE-eecCCC-EEEEecCCCeEEEEecccCee--eeecccCC--CcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 78 GLSPNS--VDAL-LKLDED-RVITGSENGLISLVGILPNRI--IQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 78 ~~~~~~--v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
. |... |..+ +.+.|- .|++|+.+|.|++||++.... ..++..|. +...+++..|+....+++|+. +.|+|
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 6 6655 6666 666554 599999999999999997422 22233333 224899999999999999988 99999
Q ss_pred EeCCCccCC
Q 029743 150 WDLDDILKG 158 (188)
Q Consensus 150 wd~~~~~~~ 158 (188)
|++......
T Consensus 1330 y~~~G~~l~ 1338 (1387)
T KOG1517|consen 1330 YSLSGEQLN 1338 (1387)
T ss_pred EecChhhhc
Confidence 999865543
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=1e-14 Score=111.86 Aligned_cols=116 Identities=17% Similarity=0.319 Sum_probs=106.3
Q ss_pred eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEec
Q 029743 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
+.+.+|...|.|+.|...|+++++|+.|..++||.+.+ ..++..+.+ |.+.++.+ .+.+...+++++.|..|++|.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEec
Confidence 34558999999999999999999999999999999886 699999999 99999999 4778888999999999999999
Q ss_pred ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 110 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+.+.++..+.+|.+ .|++++|+|-. +.+.||++++||.+
T Consensus 262 ~~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 99999999999987 89999999965 67789999999998
No 208
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=8.2e-14 Score=102.54 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=104.6
Q ss_pred eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-------cccccceeeeccCCceeEE-eecCCCEEEEecCCCe
Q 029743 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-------FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~ 103 (188)
++..|...+..++|.|-...|++++.|+.+.+|.+.. .-.++.++.+ |.++|.|+ ..+++.++++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 4456788899999999999999999999999999932 1245667889 99999999 6889999999999999
Q ss_pred EEEEecccC----------eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 104 ISLVGILPN----------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 104 v~~~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|+.|++... .....+.+|.+ .|+.+++|+....|++++.||+++.|+......
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999966421 23456788987 799999999999999999999999999887665
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3e-12 Score=96.26 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=99.8
Q ss_pred CeeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~ 74 (188)
.+|||||+.|+..+. +..|++|++.+++.... ......+..+.|+|||+.|+.. +.++ .|++||+.. +. ..
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~ 280 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 280 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EE
Confidence 369999999987643 35799999988764332 2233345678999999988754 4444 588888864 23 33
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCC-Ce--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 147 (188)
.+.. +...+... |+|+|+.|+..+.+ +. |+++++.++... .+..... ......|+|||++|+..+.+ ..|
T Consensus 281 ~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEccCCCceE
Confidence 4443 44445555 89999988776653 43 555566665443 3333322 45678999999998876543 358
Q ss_pred EEEeCCCccC
Q 029743 148 KLWDLDDILK 157 (188)
Q Consensus 148 ~iwd~~~~~~ 157 (188)
.+||+.+...
T Consensus 358 ~~~dl~~g~~ 367 (429)
T PRK03629 358 AKQDLATGGV 367 (429)
T ss_pred EEEECCCCCe
Confidence 8899877653
No 210
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=3.6e-12 Score=95.72 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=102.7
Q ss_pred eeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~ 75 (188)
+|+|||++|+.+... ..|++|++.+++.... ..+...+.+++|+|+++.|+. .+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 589999999987653 4799999988765433 335556778999999987764 44444 588888764 23333
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~ 148 (188)
+.. +....... |+|+|+.|+..+. .+ .|+++++.+++.. .+..+.. .+..+.|+|++++++.++.++ .|.
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEECCCCCEEEEEEccCCceEEE
Confidence 443 43333344 8999998876654 33 5888888766543 3333323 567889999999998887765 788
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+||+.+..
T Consensus 350 ~~d~~~~~ 357 (417)
T TIGR02800 350 VMDLDGGG 357 (417)
T ss_pred EEeCCCCC
Confidence 99988743
No 211
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.4e-12 Score=98.35 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=119.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeee----ecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC---cccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTR----SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~ 74 (188)
.+++.|++.+.. .+..+++|+...+..... -..|...+++.+++|++++++++..||.|.+|.--. .....+
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 455556555544 346788898877442111 124777789999999999999999999999996421 223445
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+.- |...|.++ |+++|.+|++|+..+.+.+|.+.+++ .+-+..- +++|..+.++||+...+....|+.|.+-...
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRL-GSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCC-ccccccc-CCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 5666 88899999 99999999999999999999999888 3334433 4489999999999999999999999999887
Q ss_pred CccCCCCC
Q 029743 154 DILKGSGN 161 (188)
Q Consensus 154 ~~~~~~~~ 161 (188)
++.....+
T Consensus 323 dl~~k~tI 330 (792)
T KOG1963|consen 323 DLEIKSTI 330 (792)
T ss_pred chhhhhhc
Confidence 76654443
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.9e-12 Score=95.37 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=102.1
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~ 74 (188)
.+|+|||+.|+..+.. ..|++|++.+++... +........++.|+|+|+.|+ +.+.++ .|++||+.. +. ..
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~ 285 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LT 285 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eE
Confidence 3689999999987643 469999998876543 333344556889999998775 445555 588888865 23 34
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecC-CCe--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i 147 (188)
.+.. +....... |+|+|++++..+. ++. |+++++.+++... +..+.. ....++|+|+|++|+..+.++ .|
T Consensus 286 ~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 286 RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN-YNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC-CccCEEECCCCCEEEEEECCCCceeE
Confidence 4544 44444455 8999998887664 444 6677776665432 222222 345789999999998765432 69
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
.+||+.+....
T Consensus 363 ~v~d~~~g~~~ 373 (433)
T PRK04922 363 AVMDLSTGSVR 373 (433)
T ss_pred EEEECCCCCeE
Confidence 99999776543
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.1e-12 Score=99.43 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=122.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC----CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++||+++++|+|..||.|.+|.--. ......+.-|...|.+++|+++|.+|.+|+..+.+.+|.+.+++ .+.+.
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLP 289 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLP 289 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccccc
Confidence 6899999999999999999996432 12345667899999999999999999999999999999998743 33333
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC----------CcceeEEEeeCCCCEEEEEeCCCc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
. -.+++..+ ++||+.+.+....|+.|.+....+.....++.+.. ..-.+.++++|..+.++..+..+.
T Consensus 290 R-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 290 R-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred c-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 3 67788888 79999999999999999998875544333332221 113567889997778888899999
Q ss_pred EEEEeCCCccCCCC
Q 029743 147 LKLWDLDDILKGSG 160 (188)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (188)
|.+||+-+......
T Consensus 369 vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYK 382 (792)
T ss_pred EEEEeccccceeee
Confidence 99999987665443
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6e-12 Score=94.91 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=98.2
Q ss_pred CeeecccCeEEEE-eCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCe--EEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGT--VLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~ 74 (188)
++|+|||+.|+.. +.++ .|++||+.+++.. .+..+......++|+|+|+.|+..+. ++. |.++++.. ...+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~ 329 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAE 329 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeE
Confidence 3699999987644 4444 5999999887754 44445555678899999998876653 444 55555543 2233
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 147 (188)
.+.. ........ |+|+|++++..+.++ .|.+||+.+++.. .+... . ......|+|||++|+..+.+ +.|
T Consensus 330 ~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 RLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred Eeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEE
Confidence 3333 33333345 899999988765432 5999999877655 44322 2 34567999999988766643 467
Q ss_pred EEEeCCCc
Q 029743 148 KLWDLDDI 155 (188)
Q Consensus 148 ~iwd~~~~ 155 (188)
.++++...
T Consensus 406 ~~~~~~g~ 413 (433)
T PRK04922 406 AAVSTDGR 413 (433)
T ss_pred EEEECCCC
Confidence 88888654
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.9e-13 Score=95.29 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=94.1
Q ss_pred EEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-
Q 029743 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI- 118 (188)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~- 118 (188)
..++|+++|..+++++.||.+|+|+... ...+..... |...|.++ |+|||++|++.+.+ ..+||+.+++.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 6899999999999999999999999764 344445555 88899999 99999999999999 8999999776211100
Q ss_pred ------------------------------------------------------ccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 119 ------------------------------------------------------AEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 119 ------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
..+ + .|++++.+++|++++.|+.|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~-siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-K-SISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-C-cceeEEEcCCCcEEEEeccC
Confidence 002 2 58999999999999999999
Q ss_pred CcEEEEeCCCccCCCCC
Q 029743 145 SMLKLWDLDDILKGSGN 161 (188)
Q Consensus 145 ~~i~iwd~~~~~~~~~~ 161 (188)
|.|.|++..+.+.....
T Consensus 303 GsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYV 319 (398)
T ss_pred CcEEEEEeceeeeeEee
Confidence 99999999987755443
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.9e-12 Score=101.95 Aligned_cols=148 Identities=19% Similarity=0.246 Sum_probs=113.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccc--eEEEEEEeCCC-EEEEecCCCeEEEEEeCCc-ccccceeee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEE--LTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF-KDCSDRFVG 78 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~-~~~~~~~~~ 78 (188)
.|+.+++|..||.|++||.+.. ..+...+.|... |..+.+.++|- .|++|+.+|.|++||++.. ......+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 5789999999999999998753 345566678777 99999998774 5999999999999999873 222222222
Q ss_pred cc---CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc------CCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 79 LS---PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 79 ~~---~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
| ++..+++ .+++...+++|+. +.|+||++. |+.+..+.. ...+.+.+++|||-.-.++.|+.|..|.
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 2 2358888 5889999999998 899999986 443333322 2223689999999998999999999999
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
||...+..
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99877654
No 217
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.47 E-value=7.5e-13 Score=100.54 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=100.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|+..|..+++++++.|.+|+||++++++..+.++ +|.+...-+...|.|.++++.+.|.++.++|+-. ++++....
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-gEcvA~m~ 680 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-GECVAQMT 680 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-chhhhhhc
Confidence 4677889999999999999999999999999887 4566788888999999999999999999999976 79999999
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
+ |...|+.+ |.+|-+.|++.+.||.|.+|.+..
T Consensus 681 G-HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 G-HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred C-cchheeeeeecccchhheeecCCceEEEEECch
Confidence 9 99999999 999999999999999999999853
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.47 E-value=4.9e-12 Score=95.69 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=116.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCC-----CEEEEecCCCeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNG-----RKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
++|..||++++.|-.+|+|.+-+-. ++....+. +..++|++++|+|.. ..+++.....++..|.+. +..
T Consensus 138 CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~ 214 (1081)
T KOG1538|consen 138 CSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQ 214 (1081)
T ss_pred eeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--cee
Confidence 3688999999999999999998744 33322332 577899999999954 467888888888888875 343
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+..-+. -.-...|+ +.++|.+++.|+.|+.+++|- +.|-.+.++... +..|+.++..|++++++.|+.||+|..|+
T Consensus 215 Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 215 IGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 332222 33345677 789999999999999999996 567777777654 44899999999999999999999999999
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+-...
T Consensus 292 l~fST 296 (1081)
T KOG1538|consen 292 LIFST 296 (1081)
T ss_pred hHHhH
Confidence 86543
No 219
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=6.3e-13 Score=98.86 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=122.5
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|.|+..|.||++...+ ..|.|.++........|....+.|.++.|+|...+|++++.. .|++||+.. +..++.+.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k-qelvKkL~ 604 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK-QELVKKLL 604 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhH-HHHHHHHh
Confidence 5688899999987553 568888888776666665567789999999988888888764 799999975 56666666
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
. ....+..+ .+|.|.-|+.|+.|+.+..+|+.- .++.+++.-|.. .+++++||+.-..+++++.|+++.||.-
T Consensus 605 t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 605 T-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred c-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEEEee
Confidence 5 66677888 699999999999999999999975 457778888866 7999999999999999999999999853
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.9e-12 Score=94.39 Aligned_cols=150 Identities=20% Similarity=0.245 Sum_probs=116.0
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-----cC---
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-----SP--- 81 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~--- 81 (188)
|++++....|+-++++.|+.+..+....+.++++..++-..+|++|+.+|.|..||.+. +..+..+... +.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccccCCCcccc
Confidence 45555567899999999999888887778999999999888999999999999999986 3444443210 22
Q ss_pred --CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC--CCEEEEEeCCCcEEEEeCCCcc
Q 029743 82 --NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
..|+++ |+.+|-.+++|+..|.+.|||+++.+++..-....+.+|..+.|.+. +..+++. ....++|||-.++.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC
Confidence 238888 88889999999999999999999988876544333458999999875 3445544 45789999998887
Q ss_pred CCCCC
Q 029743 157 KGSGN 161 (188)
Q Consensus 157 ~~~~~ 161 (188)
.....
T Consensus 306 ~~asi 310 (703)
T KOG2321|consen 306 PMASI 310 (703)
T ss_pred ceeec
Confidence 65444
No 221
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.5e-11 Score=92.30 Aligned_cols=155 Identities=17% Similarity=0.065 Sum_probs=97.6
Q ss_pred eeecccCeEEEEeC-CC--cEE--EEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEe--CCcc
Q 029743 2 TFAADAMKLLGTSG-DG--TLS--VCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSW--GYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~--~i~--i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~--~~~~ 70 (188)
+|||||+.|+..+. ++ .++ +|++..+ ................+|+|||+.|+..+ .++...+|.+ ...+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999999887653 22 343 4666542 33333333333456789999999777654 4665555554 3222
Q ss_pred cccceeeeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC---
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 143 (188)
.....+.. ....+... |+|||+.|+....+ ..|.+||+.+++... +..... .+....|+|||+.|+....
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEECCCCCEEEEEECCCC
Confidence 23344444 44445555 89999988866542 469999998887644 332222 5678999999998875432
Q ss_pred CCcEEEEeCCCccCCC
Q 029743 144 DSMLKLWDLDDILKGS 159 (188)
Q Consensus 144 d~~i~iwd~~~~~~~~ 159 (188)
...|+++++.+.....
T Consensus 394 ~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 394 ESELYLISLITKKTRK 409 (428)
T ss_pred CceEEEEECCCCCEEE
Confidence 3578888987765443
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.44 E-value=3.1e-11 Score=88.81 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=103.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|+|||+++++++.|+.|.++|+.+++.+..++. .....+++++++|+++++++ ..+.+.++|..+ .+.++.+.. .
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~-~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT-G 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE---
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc-c
Confidence 5899999999999999999999999999988874 34578899999999998775 578999999876 455555532 2
Q ss_pred -------CCceeEE-eecCCCEE-EEecCCCeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEE-eCCCcEE
Q 029743 81 -------PNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLK 148 (188)
Q Consensus 81 -------~~~v~~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~ 148 (188)
...+..+ .+|....+ +..-..+.|.+.|....+.+ ..+... . ......|+|++++++.+ ...+.|-
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-~-~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-R-FPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-c-cccccccCcccceeeecccccceeE
Confidence 2345666 57777744 44556688988887665433 233332 2 57889999999987665 4567899
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
++|.++..
T Consensus 198 viD~~~~k 205 (369)
T PF02239_consen 198 VIDTKTGK 205 (369)
T ss_dssp EEETTTTE
T ss_pred EEeeccce
Confidence 99988764
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-11 Score=92.98 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred CeeecccCeEEE-EeCCCcEEEE--EcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLG-TSGDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~-~~~d~~i~i~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~ 76 (188)
.+|||||+.|+. .+.++...|| |+..+. ...+..+........|+|||+.|+..+. ++...+|.++..+.....+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 369999998875 5667765555 444444 3444445555677899999998876554 4666777664322333333
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cEEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i 149 (188)
.. ........ |+|+|++++..+.++ .|.+||+.+++... +... . ......|+||++.|+.++.++ .+.+
T Consensus 324 t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEecCCCEEEEE
Confidence 32 22223334 899999998776544 59999998876543 3322 2 346789999999988776543 3555
Q ss_pred EeCC
Q 029743 150 WDLD 153 (188)
Q Consensus 150 wd~~ 153 (188)
.++.
T Consensus 400 ~~~~ 403 (427)
T PRK02889 400 VSSD 403 (427)
T ss_pred EECC
Confidence 5554
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=9.8e-12 Score=99.21 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=114.6
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-c----
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~---- 71 (188)
++++.++++|+.||+|++|+...- +...+......++.++...+.++.+++++.||.|++.+++... .
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 345689999999999999998641 1112222246789999999999999999999999999997521 1
Q ss_pred -ccceeeeccCCceeEE--e-ecCCC-EEEEecCCCeEEEEecccCeeeeeccc--CCCcceeEEEeeCCCCEEEEEeCC
Q 029743 72 -CSDRFVGLSPNSVDAL--L-KLDED-RVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 72 -~~~~~~~~~~~~v~~~--~-~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
+.+.......+.+..+ + ...+. .++.+...+.|..||+++..-...++. ..+ .|++++.+|-+.+++.|+..
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCC
Confidence 1111111023344445 3 23444 788888889999999987665444432 224 79999999999999999999
Q ss_pred CcEEEEeCCCccCCCCCCCcc
Q 029743 145 SMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~~~~ 165 (188)
|.+.+||++-........++.
T Consensus 1217 G~l~lWDLRF~~~i~sw~~P~ 1237 (1431)
T KOG1240|consen 1217 GQLVLWDLRFRVPILSWEHPA 1237 (1431)
T ss_pred ceEEEEEeecCceeecccCcc
Confidence 999999999776555444443
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=8.1e-12 Score=88.07 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=103.4
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
|.|++||..+++++. |..|.|||+.++..+.......+.++-+.|+||+.+|+++..|+..++|.....-.+.+-..+
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg- 279 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG- 279 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-
Confidence 578999999999876 578999999998776555445677899999999999999999999999965433333333444
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEeccc-Ce--------------eeeec-----ccC---CCcceeEEEeeCCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NR--------------IIQPI-----AEH---SEYPIESLALSHDR 135 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~--------------~~~~~-----~~~---~~~~v~~~~~~~~~ 135 (188)
.. .+... |+|+|.+|+..+... -++|.+.- ++ ++..+ ... -.+.+.+++|.|.|
T Consensus 280 sg-rvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 280 SG-RVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred CC-ceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 33 44444 899999776554332 23444321 00 00000 111 02368899999999
Q ss_pred CEEEEEeCCC--------cEEEEeCCCcc
Q 029743 136 KFLGSISHDS--------MLKLWDLDDIL 156 (188)
Q Consensus 136 ~~l~~~~~d~--------~i~iwd~~~~~ 156 (188)
.+|++.-..+ .|.+||.++..
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 9998775433 36667776543
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.4e-11 Score=91.73 Aligned_cols=149 Identities=16% Similarity=0.089 Sum_probs=99.3
Q ss_pred eeecccCeEEE-EeCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~-~~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
+|||||+.|+. .+.++ .|++||+.++... .+..+........|+|+|+.|+..+. ++ .|+++|+.. ...+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE
Confidence 69999998764 44454 4777888877654 45545566778999999998877653 33 577777653 33444
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC------C
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------S 145 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~ 145 (188)
+.. ........ |+|+|++++....+ ..|.+|++..+.. ..+... . .+..+.|+|||+.|+..+.+ .
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 543 34444455 89999998876543 3588888765443 334322 2 46788999999998765532 3
Q ss_pred cEEEEeCCCccC
Q 029743 146 MLKLWDLDDILK 157 (188)
Q Consensus 146 ~i~iwd~~~~~~ 157 (188)
.++++++.....
T Consensus 405 ~L~~~dl~g~~~ 416 (435)
T PRK05137 405 KLYTVDLTGRNE 416 (435)
T ss_pred eEEEEECCCCce
Confidence 578888866543
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=5.1e-11 Score=82.65 Aligned_cols=95 Identities=13% Similarity=0.261 Sum_probs=80.2
Q ss_pred CCcEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecCCCe-EEEEEeCCcccccceee-eccCCceeEE-eec
Q 029743 16 DGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKL 90 (188)
Q Consensus 16 d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~-~~~~~~v~~~-~~~ 90 (188)
-|.|+|-|+...+. ...+++|...|.|++.+-+|..+|+++..|+ |+|||..+ +..++.++ +.....+.++ |+|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCC
Confidence 58899999876544 4677899999999999999999999999996 89999986 56666664 3234568999 899
Q ss_pred CCCEEEEecCCCeEEEEeccc
Q 029743 91 DEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 91 ~~~~l~~~~~d~~v~~~d~~~ 111 (188)
+..+|++++..|+|+|+.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999874
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=3.8e-12 Score=90.23 Aligned_cols=131 Identities=13% Similarity=0.172 Sum_probs=108.4
Q ss_pred eeecc--cCeEEEEeCCCcEEEEEcCCC-ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~--~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.|-|. ...+++++.-+.+++||.+.+ +++..+.....+++++...|.++.+++|..-+.+..||++...-....+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45555 678999999999999999865 567777777889999999999999999999999999999875444444788
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
..+.++++ ++|.++++++++.|..|+|+|+++.+++....-.+ .++++.+.++-
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~~ 343 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDDV 343 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCCc
Confidence 88899999 89999999999999999999999977665554332 57788886643
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=5.6e-11 Score=89.68 Aligned_cols=150 Identities=17% Similarity=0.075 Sum_probs=98.8
Q ss_pred eeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~ 75 (188)
.|||||+.|+..+.+ ..|++|++.+++... +......+....|+|+|+.|+ +...++ .|+++|+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 689999999877643 468999998876543 332334556789999998876 444454 577788864 23344
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC-C--cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-S--MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~ 148 (188)
+.. +....... |+|+|+.++..+. ++ .|+++++.+++..... .... ......|+|+++.|+..+.+ + .|.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-YNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-CccceEECCCCCEEEEEEccCCceEEE
Confidence 444 44444444 8999998776553 33 5777788777643322 1112 23467899999999876643 3 588
Q ss_pred EEeCCCccC
Q 029743 149 LWDLDDILK 157 (188)
Q Consensus 149 iwd~~~~~~ 157 (188)
++|+.+...
T Consensus 359 ~~dl~tg~~ 367 (430)
T PRK00178 359 AQDLQRGSV 367 (430)
T ss_pred EEECCCCCE
Confidence 889887543
No 230
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.8e-11 Score=89.13 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=95.3
Q ss_pred eeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCCe--EEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~~~d~~~~~~~~~~ 75 (188)
.|||||+.|+..+.+ ..|+++|+.+++... +..........+|+|+|+.|+. .+.++. |.++|+.. .....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--g~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--KALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--CCeEE
Confidence 699999999877543 368889998876532 2222334457899999998765 455664 66667654 33444
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-CC--cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~ 148 (188)
+.. +....... |+|+|+.++..+. ++ .|+++|+.+++... +..... .....+|+|||++|+..+. ++ .|.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC-CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 444 44444445 8999998876553 33 46777777666433 221212 2345789999999876654 34 456
Q ss_pred EEeCCCccC
Q 029743 149 LWDLDDILK 157 (188)
Q Consensus 149 iwd~~~~~~ 157 (188)
++|+.+...
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 677776543
No 231
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6.8e-12 Score=89.51 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=102.9
Q ss_pred eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEE
Q 029743 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-----KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~ 105 (188)
-+.+|.+.|.++.|+.++++|++|+.|..+++|.++.. ..+++.....|...|.|+ |....+++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 45579999999999999999999999999999998531 123333322156889999 888888999999999999
Q ss_pred EEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 106 LVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 106 ~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+.|+.+.+.+..+.... .+.|+.+..+|..+.|++.+.++.|.+||++...
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 99999988877664322 2379999999999999999999999999998765
No 232
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=5e-11 Score=88.53 Aligned_cols=146 Identities=12% Similarity=0.161 Sum_probs=123.4
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
+...++-|...|.|.+|++..++....+. .|.++|.++.++.+-..|.+++.|+.+..|+... ....+.+.. ....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc-CCCc
Confidence 45567888889999999999998877765 7999999999999999999999999999999975 677777877 7777
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC-----CCEEE-EEeCCCcEEEEeCCCcc
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-----RKFLG-SISHDSMLKLWDLDDIL 156 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~-~~~~d~~i~iwd~~~~~ 156 (188)
+.++ .+|||..+++++. .|++||+.+++.+.+|.+|.+ +|+++.|-.+ |.+++ +...+..+.+|-+....
T Consensus 147 ~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 8888 6999999998875 799999999999999999976 9999999877 66655 44466778888777643
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=1.3e-11 Score=84.79 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=114.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccce-e
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR-F 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~ 76 (188)
+.|++.+..++++..+|.+.+-+....... +..+.|..+.+-..|+- +.+.+++|+.|+.+..||++.++..+.. .
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 357788888999888899986666555443 47789999999999986 4478899999999999999855544443 4
Q ss_pred eeccCCceeEEe-e-cCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 029743 77 VGLSPNSVDALL-K-LDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~~-~-~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~ 152 (188)
+. |...|.++. + |.+.++++|+.|..|++||.++ ++++..-... + .|+.+.++|.-. .|+.+..-+-.+|-+.
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 45 788899994 4 5788999999999999999994 6777654433 3 699999999533 2333333444566666
Q ss_pred CCccCC
Q 029743 153 DDILKG 158 (188)
Q Consensus 153 ~~~~~~ 158 (188)
+....+
T Consensus 284 ~~~~~e 289 (339)
T KOG0280|consen 284 SDKVLE 289 (339)
T ss_pred cccccc
Confidence 655443
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.6e-11 Score=91.20 Aligned_cols=155 Identities=12% Similarity=0.179 Sum_probs=119.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec------cccc-----ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 70 (188)
..++-..+|++|+.+|.|..||.+.......+. .|.+ .|+++.|+.+|-.+++|...|.+.+||++...
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 456777899999999999999998765444432 2333 39999999999999999999999999999754
Q ss_pred cccceeeeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
..+..-.+ ..-++..+ |.+. ++--+.......++|||-.+|++...+.... .+..+++-|++.++.++-.+..+.
T Consensus 262 pl~~kdh~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~--~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 262 PLLVKDHG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS--DLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred ceeecccC-CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC--CcCceeeecCCceEEEecCCCcce
Confidence 44433344 45677777 6443 3333444556689999999999888876553 589999999999999999999999
Q ss_pred EEeCCCccCCC
Q 029743 149 LWDLDDILKGS 159 (188)
Q Consensus 149 iwd~~~~~~~~ 159 (188)
.|-+....+.+
T Consensus 339 ~yyiP~LGPaP 349 (703)
T KOG2321|consen 339 TYYIPSLGPAP 349 (703)
T ss_pred eEEccccCCCc
Confidence 99888766544
No 235
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=2.3e-11 Score=92.60 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=115.5
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCc--------eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.|.| +.+.++.|+..|.|+.-+....+ .......|.++|.++.++|-+..++..+.|.+++||.-.....+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 3444 45678899999999875443321 12244578899999999997766665555999999998733566
Q ss_pred cceeeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccC--eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 73 SDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
+..+.. +...++++ |||.. ..++++..+|.|.+||+... .++........ ....+.|+++|+.|+.|...|.+.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEE
Confidence 666666 77779999 89854 57788888999999999743 34444444433 567788888999999999999999
Q ss_pred EEeCCCccCCC
Q 029743 149 LWDLDDILKGS 159 (188)
Q Consensus 149 iwd~~~~~~~~ 159 (188)
+|++.......
T Consensus 512 ~~~l~~~l~~~ 522 (555)
T KOG1587|consen 512 ILKLSESLAVP 522 (555)
T ss_pred EEEcCchhhcc
Confidence 99997654443
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=7.4e-11 Score=92.69 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=116.8
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccce-----EEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-----TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
-+.+.++.+..++.+.+||...+.....++. ...+ .-+-++++.-++++|+--+.|.+|+......+. .+.+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~G- 173 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKG- 173 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecc-
Confidence 3567788888899999999988777666552 2221 122245566788999999999999987432333 5888
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|.+.+..+ ++-+|+++++.+.|..+++|++.+.+... ..-+|+. .|+.++|.|+ .+++++.|.+.++|+.+....
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEEEEEeccccee
Confidence 99999999 89999999999999999999999988665 6677865 8999999998 899999999999997665443
Q ss_pred C
Q 029743 158 G 158 (188)
Q Consensus 158 ~ 158 (188)
.
T Consensus 251 ~ 251 (967)
T KOG0974|consen 251 E 251 (967)
T ss_pred h
Confidence 3
No 237
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.33 E-value=1.1e-10 Score=83.19 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=108.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce----eeeecccccceEEEEEEeCCCEEEEecCCC---eEEEEEeCCcccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSD 74 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~ 74 (188)
..+|.++++|.+..+....++++..... .... .-....+++.+..+......+..-| .+.+|.... .+..
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~ 145 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCE 145 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcc
Confidence 4678899999998888887888765332 2111 2233445566655555555554444 444444432 3444
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+-+ |-..+..+ ++||+++++++..|..|++-.......+..+ -+|.+ -|..++.-++. .|++++.|++|++||+
T Consensus 146 ~~lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~~-~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 PILG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDNY-LLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccCc-eeeecCCCCcEEEEec
Confidence 5567 88899999 7999999999999999999877655555554 45876 59999988664 5899999999999999
Q ss_pred CCccCCCC
Q 029743 153 DDILKGSG 160 (188)
Q Consensus 153 ~~~~~~~~ 160 (188)
.++.....
T Consensus 223 ~sgk~L~t 230 (390)
T KOG3914|consen 223 TSGKLLDT 230 (390)
T ss_pred ccCCcccc
Confidence 99887644
No 238
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.32 E-value=4.4e-11 Score=82.22 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=105.6
Q ss_pred Ceeeccc-CeEEEEeCCCcEEEEEcCCCceeeee---cccccceEEEEEEeCC-CEEEEecCC-CeEEEEEeCCcccccc
Q 029743 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNG-RKVVCGSQS-GTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~~l~~~~~d-~~i~~~d~~~~~~~~~ 74 (188)
++|...+ +.+|+.+.||.+++||++..+.-..+ +....+..-++|+++. +++++-..| ..|.+.|++....++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 3566644 45788899999999999875432222 2335678899999844 677765444 5799999999888999
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccC------eeeeecccCCCcceeEEEeeC-CCCEEEEEeCCC
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDS 145 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 145 (188)
.+++ |...|..+ |.| ....+++++.|..+.+||++.- .++..+... +.|+.+.|++ ....++.+. ++
T Consensus 282 ~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~--~EVNqi~Ws~~~~Dwiai~~-~k 357 (364)
T KOG0290|consen 282 RLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAG--GEVNQIQWSSSQPDWIAICF-GK 357 (364)
T ss_pred hhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhcc--ceeeeeeecccCCCEEEEEe-cC
Confidence 9999 99999999 877 4568999999999999999752 244445533 3699999996 445666554 44
Q ss_pred cEE
Q 029743 146 MLK 148 (188)
Q Consensus 146 ~i~ 148 (188)
++.
T Consensus 358 kle 360 (364)
T KOG0290|consen 358 KLE 360 (364)
T ss_pred eee
Confidence 443
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3e-10 Score=85.45 Aligned_cols=156 Identities=13% Similarity=0.019 Sum_probs=93.0
Q ss_pred eeecccCeEE---EEeCC--CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC----eEEEEEeCCc-c
Q 029743 2 TFAADAMKLL---GTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG----TVLLYSWGYF-K 70 (188)
Q Consensus 2 ~~s~~~~~l~---~~~~d--~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~-~ 70 (188)
+|||||+.++ +...+ ..|++.++..++..+.. ...+......|+|||+.|+..+. ++ .+.+|++... .
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 5999997532 33333 46888888877654332 23445567899999988876543 23 2344666531 1
Q ss_pred cccceeeeccCCceeEE-eecCCCEEEEec-CCCe--EEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCC-
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGL--ISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~--v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 144 (188)
.....+........... |+|||+.|+..+ .+|. |+++++.. +.....+..+.. .+....|+|||+.|+..+.+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeECCCCCEEEEEEcCC
Confidence 12223332022233444 899999877665 4564 44445432 223344444433 56788999999998866543
Q ss_pred --CcEEEEeCCCccCCC
Q 029743 145 --SMLKLWDLDDILKGS 159 (188)
Q Consensus 145 --~~i~iwd~~~~~~~~ 159 (188)
..|.+||+.+.....
T Consensus 349 g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 349 GVRQICVYDLATGRDYQ 365 (428)
T ss_pred CCcEEEEEECCCCCeEE
Confidence 469999998776543
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=7.3e-10 Score=81.64 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=101.1
Q ss_pred cCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
+++++ +-..++.|.+.|..+.+.+..+......-..+.++|||+++++++.|+.|.++|+.+ .+.+..+.. .....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~--G~~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV--GGNPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec--CCCcc
Confidence 34554 445579999999999999988885544445678999999999999999999999987 467777764 44456
Q ss_pred EE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCC------CcceeEEEeeCCCCEEEEEeC-CCcEEEEeCCCc
Q 029743 86 AL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSISH-DSMLKLWDLDDI 155 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 155 (188)
.+ ++++|+++++++ ..+.+.++|.++.++++.+.... ..++..+..+|....++..-. .+.|.+-|....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 67 799999998876 68899999999999888775431 225678888888885655544 478887787654
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6e-10 Score=82.61 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=97.5
Q ss_pred CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe--cCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCC
Q 029743 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG--SQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED 93 (188)
Q Consensus 17 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 93 (188)
.++++++++.....-.+. ..++|+++.|+|+++.++++ -.=..+.+||++ +..+..+ ..++-.++ |+|.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---PEGPRNTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---CCCCccceEECCCCC
Confidence 367888877444433333 47899999999999877653 344578999986 3444333 34566777 899999
Q ss_pred EEEEec---CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe------CCCcEEEEeCCCcc
Q 029743 94 RVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS------HDSMLKLWDLDDIL 156 (188)
Q Consensus 94 ~l~~~~---~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~ 156 (188)
+++.++ .-|.|-+||+.+.+++..+... + -+-+.|+|||++++++. .|+.++||+.....
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-N--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccC-C--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 988776 4578999999998888888766 2 35579999999998887 37889999987543
No 242
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=4.8e-11 Score=83.82 Aligned_cols=151 Identities=13% Similarity=0.230 Sum_probs=112.9
Q ss_pred EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----ccccceeeeccCCceeE
Q 029743 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~v~~ 86 (188)
++.+.+-.+-+-|+++|.. +.+. ..+.|.++.|...++.++.|..+|.|..+|++.. +.+...+. |...+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 3344556677778777644 2343 5667889999988999999999999999999863 34444444 7888998
Q ss_pred E-e-ecCCCEEEEecCCCeEEEEecccCee---eeecccCCCc-ceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 87 L-L-KLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 87 ~-~-~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+ . .-++++|++.+-+|+|++||++.-++ +.++.+|... .-.-+..++....+++++.|...+||.++.+.....
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 8 4 44788999999999999999997666 8888887531 111234556677888899999999999998876666
Q ss_pred CCCcc
Q 029743 161 NNISQ 165 (188)
Q Consensus 161 ~~~~~ 165 (188)
++.+.
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 55544
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.26 E-value=4.9e-10 Score=78.50 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=96.8
Q ss_pred eecccCeEEE-EeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceeeecc
Q 029743 3 FAADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 3 ~s~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|..|.-++++ ...++.|.+|++...+-...+.....++.++.|+|+|+.| .+...+-.|.+|.+.+. . ...+.- .
T Consensus 56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~-~~~~~~-p 132 (447)
T KOG4497|consen 56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-K-GYLLPH-P 132 (447)
T ss_pred eeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc-e-eEEecc-c
Confidence 4445444443 3567899999998888777888788899999999999655 56677889999999763 2 222222 3
Q ss_pred CCceeEE-eecCCCEEEEecCCC------------------------------------eEEEEecccCeeeeecccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENG------------------------------------LISLVGILPNRIIQPIAEHSE 123 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~------------------------------------~v~~~d~~~~~~~~~~~~~~~ 123 (188)
+..+..+ |+|+|++.+..+... .+.+||---...+..+ +.+
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~ 210 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERG 210 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eec
Confidence 3445555 789999877664321 1233332111122222 222
Q ss_pred cceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 124 YPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 124 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
-.+..++|+|.+++|+.|+.|+.+++-+
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhc
Confidence 2588899999999999999999998855
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.1e-09 Score=82.89 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=91.0
Q ss_pred eeecccCeEEEE-eCCCc--EEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGT-SGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~--i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
+|+|||+.|+.. +.++. |+++|+.+++.. .+..+........|+|+|+.|+..+. ++ .|.++|+.. +. ...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 699999988764 45554 778888877654 34445556678899999998766543 44 455556543 22 333
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-CC--cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~ 148 (188)
+.. ........ |+|+|++++..+. ++ .|.++|+.++... .+... . ......|+|||+.|+..+. ++ .++
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 322 22222233 8999998877654 33 4666788777643 33322 1 2235589999998876553 33 367
Q ss_pred EEeCCCc
Q 029743 149 LWDLDDI 155 (188)
Q Consensus 149 iwd~~~~ 155 (188)
+++....
T Consensus 421 ~~~~~G~ 427 (448)
T PRK04792 421 AVSIDGR 427 (448)
T ss_pred EEECCCC
Confidence 7776543
No 245
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=3e-09 Score=77.99 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=116.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC-eEEEEEeCCcccccceeeeccCCce
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
+|.+++..++ |...|.+...+-.++. ++...|.-..+..+++.++.|..|| .+-++|.+. ..++.+.+ .-+.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC-Cccce
Confidence 6888888877 8888888766654432 4677788888888888999999999 899999874 45556666 67788
Q ss_pred eEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC----cEEEEeCCCcc
Q 029743 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----MLKLWDLDDIL 156 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~ 156 (188)
.++ .+|+|++++++.....+.++|+.+++....-+...+ -|..+.|||+++++|-+--+| .|+++|+.+.+
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 888 799999999999999999999999987654444434 899999999999999776554 68999988754
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.4e-09 Score=81.05 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=118.3
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecc---cccceEEEEEEe--------------------CCCEEEEecCCCe
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMK--------------------NGRKVVCGSQSGT 60 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~--------------------~~~~l~~~~~d~~ 60 (188)
.|-..++|....||.+++|+...++....+.. ..+..++.+|.- +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45677899999999999999998877665542 223444555531 1235777888999
Q ss_pred EEEEEeCCcccccceee-eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 61 VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 61 i~~~d~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
|.+|++.. ++....+. +.|.+.+.++ ++.+-..|.+++.|+.+..|+...+..++....... .+.+++.+||+..|
T Consensus 82 v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 99999975 45555554 3378889988 677888999999999999999999998888887766 78999999999999
Q ss_pred EEEeCCCcEEEEeCCCccCCC
Q 029743 139 GSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~ 159 (188)
++++ +.|++||+++.+...
T Consensus 160 ~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred Eecc--ceEEEEEccCceEEE
Confidence 8775 679999999876443
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.5e-09 Score=81.92 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=93.5
Q ss_pred eeecccCeEEEE-eCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
+|||||+.|+.. ..++ .|+++|+.++... .+..+........|+|+|+.|+..+. ++ .|.++++.. +. ...
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 699999988754 3444 6888899887654 34445556677899999988766543 33 566666654 22 233
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCC-C--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~ 148 (188)
+.. ........ ++|+|++++..... + .|.++|+.+++.. .+... . ......|+|||+.++..+.+ ..|.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222233 79999998876643 3 5888998877643 33222 1 22356899999998766643 3467
Q ss_pred EEeCCCc
Q 029743 149 LWDLDDI 155 (188)
Q Consensus 149 iwd~~~~ 155 (188)
+.++...
T Consensus 402 ~~~~~g~ 408 (430)
T PRK00178 402 LVSINGR 408 (430)
T ss_pred EEECCCC
Confidence 7777543
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=1.1e-09 Score=82.38 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=95.9
Q ss_pred CeeecccCeEEEE-eCC--CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGT-SGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d--~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~ 74 (188)
++|+|||+.|+.. +.+ ..|++|++.++... .+..+........|+|+++.|+..+. .+ .|.++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 3689999987654 333 35888998877654 33334445567789999998876554 33 566667653 2333
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i 147 (188)
.+.. +....... ++|+|++++....++ .|.+||+.++... .+... . ......|+|++++|+..+.++ .+
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4443 44444555 799999998887765 7889998875543 33322 2 345678999999988776553 45
Q ss_pred EEEeCCC
Q 029743 148 KLWDLDD 154 (188)
Q Consensus 148 ~iwd~~~ 154 (188)
++.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 5555443
No 249
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.22 E-value=4.3e-11 Score=81.21 Aligned_cols=97 Identities=15% Similarity=0.266 Sum_probs=80.4
Q ss_pred EEEeCCCcEEEEEcCC--Cce--eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 11 LGTSGDGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++|+.+..+..|+++. +.+ ...+.-.+..|..+...||++.+++++.|+.|++|..++ .+++..++. |...+.+
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky-Hsagvn~ 298 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY-HSAGVNA 298 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh-hhcceeE
Confidence 5566667788888764 222 122222345689999999999999999999999999987 688999999 9999999
Q ss_pred E-eecCCCEEEEecCCCeEEEEec
Q 029743 87 L-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
+ |+|+..++++++.|++|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 9 8999999999999999999986
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.20 E-value=1.3e-08 Score=74.76 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=97.5
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCc--ee--eeec-ccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~ 73 (188)
+.|+|+++++++... ...|++|++.... .. ..+. ........++|+|+++++++. ..++.|.++++......+
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 368999999888754 4689999987644 31 1222 344567899999999988655 456789999987211111
Q ss_pred ce---eeec---c--CCceeEE-eecCCCEEEEec-CCCeEEEEeccc--Ce--eeeecccCCCcceeEEEeeCCCCEEE
Q 029743 74 DR---FVGL---S--PNSVDAL-LKLDEDRVITGS-ENGLISLVGILP--NR--IIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 74 ~~---~~~~---~--~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
.. +... . ......+ ++|+|++|+++. ..+.|.+|++.. +. .+..+... +...+.++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEE
Confidence 11 1110 1 1135566 799999988766 567899999942 33 33333332 22478999999999998
Q ss_pred EEe-CCCcEEEEeCC
Q 029743 140 SIS-HDSMLKLWDLD 153 (188)
Q Consensus 140 ~~~-~d~~i~iwd~~ 153 (188)
++. .++.|.+|++.
T Consensus 308 Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 308 VANQDSNTVSVFDID 322 (345)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 777 56789999774
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=3.3e-09 Score=73.24 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=101.9
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccc------cceEEEEEEeCCCEEEEecCCCeEEEEEeCC-cccccceeeeccC
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE------EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLSP 81 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~ 81 (188)
.++-+...|.|.++..........+.+-. ....++.|++.+..++++..+|.+.+-+... --+.++.++. |.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cc
Confidence 34555566777777655433222222211 1245778999999999999999988544322 1234457788 88
Q ss_pred CceeEE-ee-cCCCEEEEecCCCeEEEEecc-cCeeeee-cccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCcc
Q 029743 82 NSVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 82 ~~v~~~-~~-~~~~~l~~~~~d~~v~~~d~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
-..+.. |+ .+.+++++|+.|+.+.-||++ .++.+.. .+.|.. .|.++.-+| ...++++|+.|-.|++||+++..
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 888877 74 355799999999999999999 4555544 445544 588887776 56789999999999999999654
No 252
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.18 E-value=2.1e-08 Score=69.08 Aligned_cols=165 Identities=13% Similarity=0.200 Sum_probs=106.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc-------cccceEEEEEEeCC------CEEEEecCCCeEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~ 67 (188)
++||||+.+||.+...|+|+++|+....+ ..++. ....|..+.|.+.. ..|++-...|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 58999999999999999999999875333 33321 23456677775521 245666677777777653
Q ss_pred Cc----ccccce--eeeccCCceeEE-eecCCCEEEEecCC-C----------eEEEEecccCee---------------
Q 029743 68 YF----KDCSDR--FVGLSPNSVDAL-LKLDEDRVITGSEN-G----------LISLVGILPNRI--------------- 114 (188)
Q Consensus 68 ~~----~~~~~~--~~~~~~~~v~~~-~~~~~~~l~~~~~d-~----------~v~~~d~~~~~~--------------- 114 (188)
.+ ...... +.......|.++ ++|..++|++|+.. . -+..|.+-++.+
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 21 111111 222134567777 79988888777531 1 245565422211
Q ss_pred ------eeec-------ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCCCccc
Q 029743 115 ------IQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQA 166 (188)
Q Consensus 115 ------~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 166 (188)
.+.+ .+.....|..|..+|||+.|++...+|.|.+|++.+.........+|.
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 0000 111122689999999999999999999999999999988877665543
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.16 E-value=2.3e-08 Score=73.42 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=102.0
Q ss_pred CeeecccCeEEEEeC----CCcEEEEEcCCC--ce--eeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSG----DGTLSVCNLRKN--TV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~----d~~i~i~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~ 71 (188)
|+++|++++|++... .+.|..|.+... .+ +............++++|++++|+++.. ++.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 468899999999876 468888887653 33 2233323455678999999999998875 78999999976433
Q ss_pred ccce---ee--e-------ccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCe--e--eeecccCCCcceeEEEeeC
Q 029743 72 CSDR---FV--G-------LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNR--I--IQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 72 ~~~~---~~--~-------~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~--~--~~~~~~~~~~~v~~~~~~~ 133 (188)
.... +. + .......++ ++|+|+++++.. ....|++|++.... . ...+....+...+.++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3222 11 0 012335566 899999888765 35579999987654 2 2223333333578999999
Q ss_pred CCCEEEEEe-CCCcEEEEeCC
Q 029743 134 DRKFLGSIS-HDSMLKLWDLD 153 (188)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~ 153 (188)
++++++... .++.|.++++.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CcCEEEEecCCCCcEEEEeec
Confidence 999886554 67889999888
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=9.8e-10 Score=77.28 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=75.5
Q ss_pred EEeCCCcEEEEEc--CCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-e
Q 029743 12 GTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (188)
Q Consensus 12 ~~~~d~~i~i~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (188)
.|...+.|.+..+ ..-.++..+.+|.+.+.+++|.|....|+++..|..+.+||+.........+.+ |...+..+ .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhh
Confidence 3334444444333 233556677899999999999999999999999999999999754445555677 88888888 4
Q ss_pred ecCCCEEEEecCCCeEEEEec
Q 029743 89 KLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~ 109 (188)
.+--+.+++++.||.|.+|++
T Consensus 249 ~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhheeeeeccCCCeEEEEec
Confidence 566778999999999999998
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.15 E-value=6.8e-10 Score=77.81 Aligned_cols=136 Identities=9% Similarity=0.073 Sum_probs=99.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|||+|+++|+++.- .+.|-|..+-+..+.+.. -..|.-+.|..+..+++ ....++.|.+|++.+. +--..+.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc-C
Confidence 699999999998875 777888777666555543 45678899998886655 4567889999999763 33334444 4
Q ss_pred CCceeEE-eecCCCEEE-EecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 81 PNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
...+..+ |+|+|+.++ +..-+-.|.+|.+.+.+.... .-. ...+..++|+|||++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~p-K~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHP-KTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-ccc-ccCceeEEECCCCceeeeeec
Confidence 5566666 899997655 455688899999987765432 222 225788999999999887763
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=1.1e-08 Score=84.51 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=102.5
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeee--------cc------cccceEEEEEEeCCCEEE-EecCCCeEEEE
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS--------EF------SEEELTSVVLMKNGRKVV-CGSQSGTVLLY 64 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~--------~~------~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~ 64 (188)
++|+| ++..+++.+.++.|++|+..++...... .+ .-.....++++|+++.|+ +-..++.|++|
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 46788 4555566667789999998776432110 00 112456799999998554 55567899999
Q ss_pred EeCCcccccce------------eee-------ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc-----
Q 029743 65 SWGYFKDCSDR------------FVG-------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA----- 119 (188)
Q Consensus 65 d~~~~~~~~~~------------~~~-------~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~----- 119 (188)
|+...+..+.. +-. ..-.....+ ++++|.++++-..++.|++||..++.......
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 98753211100 000 000123455 68899988888899999999998766542221
Q ss_pred --------cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 120 --------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 120 --------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.-. ....++++++|+.+++-+.++.|++||+++...
T Consensus 848 ~~dG~~~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 848 FKDGKALKAQLS-EPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCcccccccC-CceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1111 467899999999888888899999999987653
No 257
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.2e-08 Score=76.49 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=95.6
Q ss_pred eeecccCe-EEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCC--CeEEEEEeCCcccccc
Q 029743 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQS--GTVLLYSWGYFKDCSD 74 (188)
Q Consensus 2 ~~s~~~~~-l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~~~d~~~~~~~~~ 74 (188)
.|||||+. ++..+. ...|+++|+.+++...... ..+......|+|||+.++. .+.+ ..|.++++.. ...+
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEE
Confidence 68999985 655443 3568999998887654433 4555677889999987654 4334 4677777754 2344
Q ss_pred eeeeccCC-ceeEEeecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC------
Q 029743 75 RFVGLSPN-SVDALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------ 144 (188)
Q Consensus 75 ~~~~~~~~-~v~~~~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 144 (188)
.+.. ... .....|+|||+.++..+. .+ .|++.|+.+++..+..... . ....|+|+|+.|+..+..
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEEEEcCCCcccC
Confidence 4544 333 222338999998776653 23 5888888877654333221 1 234899999998766543
Q ss_pred ---CcEEEEeCCCccCC
Q 029743 145 ---SMLKLWDLDDILKG 158 (188)
Q Consensus 145 ---~~i~iwd~~~~~~~ 158 (188)
..|.+.|+.+....
T Consensus 346 ~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 346 KNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCCcEEEEEECCCCCeE
Confidence 36788888776543
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=2.6e-08 Score=70.63 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=105.3
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCC--Cceee--eecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRK--NTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~ 72 (188)
|+|+|+.+.|+++..+ +.|..|.+.. |+... .......+...+++++++++++++... |.|.++.++..+..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 5789999999988654 6777776653 54422 222223344889999999999988764 78999999764433
Q ss_pred cce--eeeccCCc----------eeEE-eecCCCEEEEecC-CCeEEEEecccCeeeee--cccCCCcceeEEEeeCCCC
Q 029743 73 SDR--FVGLSPNS----------VDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 73 ~~~--~~~~~~~~----------v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 136 (188)
... ... |.+. +... +.|++++|++... -.+|.+|++..|..... .....++..+.|.|+|+++
T Consensus 125 ~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 125 QPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred ccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 222 111 3333 5555 7999999988873 34699999987664322 1112233578999999999
Q ss_pred EEEEEe-CCCcEEEEeCCCc
Q 029743 137 FLGSIS-HDSMLKLWDLDDI 155 (188)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~~~ 155 (188)
+..... .+++|.+|..+..
T Consensus 204 ~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC
Confidence 886554 6899999998874
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=3.5e-10 Score=80.72 Aligned_cols=98 Identities=9% Similarity=0.104 Sum_probs=75.8
Q ss_pred EEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEe
Q 029743 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITG 98 (188)
Q Consensus 19 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 98 (188)
+.+|....+.. ..+-+|-..++.++|+||+++|+++..|..|++-.+...-..-..+-| |+..|..+.--+++.|+++
T Consensus 134 ~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-H~eFVS~isl~~~~~LlS~ 211 (390)
T KOG3914|consen 134 FDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-HKEFVSTISLTDNYLLLSG 211 (390)
T ss_pred eeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-cHhheeeeeeccCceeeec
Confidence 33444333333 334479999999999999999999999999999888653333344568 9999998865666779999
Q ss_pred cCCCeEEEEecccCeeeeec
Q 029743 99 SENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 99 ~~d~~v~~~d~~~~~~~~~~ 118 (188)
+.|++|++||+.+|+.+.++
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCCcEEEEecccCCccccc
Confidence 99999999999999876544
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=94.85 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=116.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec---CCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+.|+.+|+.+..+..||.+.+|.+. .++....+.|....+.+.|-. ..+++++ .++++.+||.-......-.-.
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 3688899999999999999999977 556666778988888888865 5666654 467999999754333333336
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
. |.+.++++ +-|..+++++|+.+|.|.+||++..+.+.+++. ++ ...++++++..|.|+||++....
T Consensus 2334 ~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2334 C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc
Confidence 7 89999999 799999999999999999999998777655543 44 56788999999999999999876
Q ss_pred CCCCCC
Q 029743 157 KGSGNN 162 (188)
Q Consensus 157 ~~~~~~ 162 (188)
.....+
T Consensus 2402 ll~~~p 2407 (2439)
T KOG1064|consen 2402 LLHTFP 2407 (2439)
T ss_pred hhhcCc
Confidence 555444
No 261
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.09 E-value=5.5e-10 Score=55.00 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=36.0
Q ss_pred ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
+++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.08 E-value=7.1e-10 Score=54.60 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=35.9
Q ss_pred CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 112 NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 112 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
++++.++.+|.+ .|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 467888999976 899999999999999999999999997
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=3.2e-10 Score=82.92 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=112.4
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCc------eeeeec------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNT------VQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~------~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
+..| +...+++++.|-.+++||.+.-. .+..+. ...-.|++++++.++.-|.++-.|-.|+++.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 3455 34578999999999999976421 112221 1234689999998777666667777899985432
Q ss_pred c-c----------cccce-eeeccCC--ceeEE-e-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee
Q 029743 69 F-K----------DCSDR-FVGLSPN--SVDAL-L-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (188)
Q Consensus 69 ~-~----------~~~~~-~~~~~~~--~v~~~-~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 132 (188)
. + ..+.. +++ |.. .|..+ | -|...|+++|+.-|.|.+|+-.+++.++.+.+... -|+||.=+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 12222 566 654 36667 4 78999999999999999999999999999988866 79999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 029743 133 HDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|--..||+.+-|..|+||...
T Consensus 446 P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred CCCchhhccCCccceeeecCC
Confidence 999999999999999999863
No 264
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.02 E-value=1.6e-08 Score=79.47 Aligned_cols=143 Identities=12% Similarity=0.151 Sum_probs=106.3
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---------CCeEEEEEeCCcccccce
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~ 75 (188)
.+++++.+|...|+|.+-|..+-+.++++.+|.+.+..+.. .|+.|++++. |.-|++||+++- +.+.-
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 46789999999999999999999999999999999888665 7889999876 446889999863 33333
Q ss_pred eeeccCCceeEE-eecC-CCEEEEecCCCeEEEEeccc-Cee---eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRI---IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~-~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
+.- +..+ .-+ |+|. ...+++++..|...+.|..+ ..+ +..+... +..+..++++++++.|+.+..+|.|.+
T Consensus 262 I~~-~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 262 IQF-PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred ccc-ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEee
Confidence 333 3333 233 6774 45778888889999988332 121 2222222 224899999999999999999999999
Q ss_pred EeCC
Q 029743 150 WDLD 153 (188)
Q Consensus 150 wd~~ 153 (188)
|.-.
T Consensus 339 wa~~ 342 (1118)
T KOG1275|consen 339 WADR 342 (1118)
T ss_pred ecCC
Confidence 9833
No 265
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=80.06 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=120.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcccc--cce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDC--SDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~--~~~ 75 (188)
|.|+..|..|++|+.|..|.+||...+.....+. +|...|....|-|. .+.+++++.||++++-.+...+.+ ...
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 4578889999999999999999999887766665 89999999999884 478999999999999887543322 233
Q ss_pred eeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccCeeeeec---ccCCC--cceeEEEeeCCCC-EEEEEeCCCcE
Q 029743 76 FVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPI---AEHSE--YPIESLALSHDRK-FLGSISHDSML 147 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~--~~v~~~~~~~~~~-~l~~~~~d~~i 147 (188)
+.. |.+++..+ .-|+. ..|.+++.|+.+.-+|++.+.+...+ ..+.. -..+.++..|... .+++++.|..+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 455 88888888 45644 46889999999999999876644333 22211 1366888888554 78999999999
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
++||.+.....
T Consensus 307 RvYD~R~~~~e 317 (559)
T KOG1334|consen 307 RVYDQRRIDKE 317 (559)
T ss_pred hhhcccchhhc
Confidence 99998876544
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.7e-07 Score=66.61 Aligned_cols=154 Identities=11% Similarity=0.131 Sum_probs=103.6
Q ss_pred eeecccCeEEEEeC-CCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCccccccee
Q 029743 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~ 76 (188)
.|.|++++|++.+. -..|.+|++..|.....-+ ........|.|+|++++....+ -+++|.+|..+.....+..+
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 47899999998865 3579999998775432111 3445678999999999887654 47899999997532222222
Q ss_pred ee--------ccCCceeEE-eecCCCEEEEecC-CCeEEEEeccc--Ceee--eecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 77 VG--------LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP--NRII--QPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 77 ~~--------~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+. ........+ .+++|++|+++.. ...|.+|.+.. ++.. .....+ +...+.+.|++.+++|+++.
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEc
Confidence 21 012334555 6999999998874 44688887764 3221 112222 21368899999999998888
Q ss_pred CC-CcEEEEeCCCcc
Q 029743 143 HD-SMLKLWDLDDIL 156 (188)
Q Consensus 143 ~d-~~i~iwd~~~~~ 156 (188)
.+ ..|.+|.+....
T Consensus 310 q~sd~i~vf~~d~~T 324 (346)
T COG2706 310 QKSDNITVFERDKET 324 (346)
T ss_pred cCCCcEEEEEEcCCC
Confidence 55 579999877544
No 267
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.01 E-value=1.8e-09 Score=73.38 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=93.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce-eeeecccccceEEEEEEeCCCEEEEecC-----CCeEEEEEeCCcccccceeeecc
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++-+++++.|+.+.+++.+.-.. ...+..-.....+.+....++.+.++.- -+..+.|+++..+...-... .
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--A 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--c
Confidence 56688899999999998765211 1111111111122233334444444321 23566777754222221112 2
Q ss_pred CCceeEEe-ec-CCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...+.+++ +| +...+++|+.+|.+.+||.+... +...+..|+. +++.+.|+| ++..|.++++||.+-.||..+.
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 23377774 67 45577888999999999998754 5566788865 899999999 6678999999999999998853
No 268
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.7e-09 Score=75.20 Aligned_cols=127 Identities=18% Similarity=0.301 Sum_probs=97.3
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCC-----ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccc---c
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC---S 73 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~---~ 73 (188)
|...+++++.|.++|.|..+|++.+ .+...+ -|.+.|+++..-. ++++|++.+.+|.|++||++.- ++ +
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V 337 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSV 337 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccce
Confidence 4556789999999999999999753 333344 4889999998766 7889999999999999999863 44 6
Q ss_pred ceeeeccCCceeEE-e--ecCCCEEEEecCCCeEEEEecccCeeeeecccCCC---cceeEEEee
Q 029743 74 DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLALS 132 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~~ 132 (188)
+.+.+ |-....-+ + .+....+++++.|...++|.++.+..+.++..... ..+.+++|.
T Consensus 338 ~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 338 MQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 77788 76555444 3 67778888999999999999999998888765432 134455554
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=5.2e-09 Score=78.35 Aligned_cols=154 Identities=10% Similarity=0.125 Sum_probs=112.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCC-------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee-e
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-V 77 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~ 77 (188)
+.+-+++++.|.+|++|.++. ..+..+.+.|..+|..+.|-.+-++++++ |+-|++||.-. ++.+... .
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi-gr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI-GRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc-cchhHhhhc
Confidence 456789999999999999864 23556677899999999999888887665 78899999743 3444422 1
Q ss_pred ec---cCCceeEEeecCCCEEEEe-cCCCeEEEEecccCeeeeecc-----cCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.- ..+.+.|+-+-+...++.| +...+|+++|.+.++-...++ +. .+.+.+++..+.|++++.+-..|.|.
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P-na~~R~iaVa~~GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP-NALTRAIAVADKGNKLAAALSNGCIA 901 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC-chheeEEEeccCcchhhHHhcCCcEE
Confidence 10 1233444434455666666 578899999999876444432 33 23688999999999999999999999
Q ss_pred EEeCCCccCCCCCCC
Q 029743 149 LWDLDDILKGSGNNI 163 (188)
Q Consensus 149 iwd~~~~~~~~~~~~ 163 (188)
+.|.+++......+.
T Consensus 902 ~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 902 ILDARNGKVINSWRP 916 (1034)
T ss_pred EEecCCCceeccCCc
Confidence 999999886554443
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=2.9e-07 Score=67.11 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=103.0
Q ss_pred CeeecccCeEEEEe-C-CCcEEEEEcCCCceeeeeccccc-------------------------------ceEEE----
Q 029743 1 MTFAADAMKLLGTS-G-DGTLSVCNLRKNTVQTRSEFSEE-------------------------------ELTSV---- 43 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~-d~~i~i~~~~~~~~~~~~~~~~~-------------------------------~v~~~---- 43 (188)
++++|||++|+... . +..|.+.|+.+++.+..+.-..+ .+...
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 36899999999876 3 68899999988765553321000 00011
Q ss_pred ----------EEEe-CCCEEEEecCCCeEEEEEeCCcc----cccceeee------ccCCceeEE-eecCCCEEEEec--
Q 029743 44 ----------VLMK-NGRKVVCGSQSGTVLLYSWGYFK----DCSDRFVG------LSPNSVDAL-LKLDEDRVITGS-- 99 (188)
Q Consensus 44 ----------~~~~-~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~-- 99 (188)
.+.+ +|+.+++... |+|.+.|+.... .....+.. .......-+ ++|+++++++..
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1233 6666666666 889999864321 11111111 011122235 699999888743
Q ss_pred --------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEe-CCCcEEEEeCCCccCCCCC
Q 029743 100 --------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 100 --------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~~ 161 (188)
..+.|.++|..+++.+..+... . .+..++++||++ +|++.. .++.|.++|+.+.+.....
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELG-H-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCC-C-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2257999999999999888754 2 689999999999 777666 6788999999988765443
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.2e-09 Score=89.29 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=118.1
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
+|...+.++|+.||.+++|....++.+..+. ..+..|+.+.|+.+|+.+.++..||.+.+|.+. ..+....+. |..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qc-hnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYTSWQC-HNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccceecccc-CCc
Confidence 4566788999999999999998887776665 334889999999999999999999999999986 455666666 666
Q ss_pred ceeEE-eecCCCEEEEec---CCCeEEEEeccc--C-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 83 SVDAL-LKLDEDRVITGS---ENGLISLVGILP--N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~~--~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..... |-. ..+++++ .++.+.+||.-- . .++. ..|.+ .++++++.|..+.|++|+.+|.|.+||++..
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 66655 432 4555554 467899999542 2 2333 66755 6999999999999999999999999999988
Q ss_pred cCCCCCC
Q 029743 156 LKGSGNN 162 (188)
Q Consensus 156 ~~~~~~~ 162 (188)
+.++..+
T Consensus 2369 ql~h~~~ 2375 (2439)
T KOG1064|consen 2369 QLRHTFQ 2375 (2439)
T ss_pred HHHHHhh
Confidence 7766554
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=4.5e-09 Score=80.71 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=116.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---------------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
+.|+.+..++++|+.||.++|..+.+. ..-+++.+|...|.-+.|+.+.+.|-++..+|.|.+|-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 368888999999999999999977542 12245679999999999999999999999999999999
Q ss_pred eCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee-eecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 66 WGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
+-.+.-+-..+..+.++.|.++ |+.+|+.++....||.|.+=.+...+.- +.+.+. ....+.|++|.+.++.+-.
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHHHHhhhc
Confidence 8654333333433256778888 8999999999999999877766543321 223332 3557889999988888888
Q ss_pred CCcEEEEeCCCc
Q 029743 144 DSMLKLWDLDDI 155 (188)
Q Consensus 144 d~~i~iwd~~~~ 155 (188)
.|.+.+||.+..
T Consensus 177 nge~hlydnqgn 188 (1189)
T KOG2041|consen 177 NGETHLYDNQGN 188 (1189)
T ss_pred CCcEEEeccccc
Confidence 899999987653
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=1e-08 Score=72.37 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=103.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC-ce--eeeec-----ccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN-TV--QTRSE-----FSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~-~~--~~~~~-----~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.++.|+..++++ .|-.|.+|+++-- +. +--++ ....-|++..|+|. .+.++.++..|+|++.|++...-|
T Consensus 171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 566778787775 4578999998632 11 11222 22345889999994 477888999999999999843211
Q ss_pred cc---ee------------eeccCCceeEE-eecCCCEEEEecCCCeEEEEecc-cCeeeeecccCCC------------
Q 029743 73 SD---RF------------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSE------------ 123 (188)
Q Consensus 73 ~~---~~------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~~~~------------ 123 (188)
.. .+ .+ --..|..+ |+++|+|+++-.. -+|++||+. ..+++.+++.|..
T Consensus 250 d~hsKlfEepedp~~rsffse-iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSE-IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred cchhhhhccccCCcchhhHHH-HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 11 11 11 22346667 8999999988654 479999994 4556666554421
Q ss_pred --cceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 124 --~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.-..++|+.++.++++|+..+.+++|++..+..
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 1234578999999999999999999999665543
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.95 E-value=1.2e-07 Score=69.96 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=100.7
Q ss_pred eecccCeEEEEeCCC-cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 3 FAADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+.-+++-++.|..|| .+-|+|..+++.. .+...-+.|.++..+++|+.++.+.....+.+.|++++ .....-+. ..
T Consensus 367 ~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS-~~ 443 (668)
T COG4946 367 IQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKS-EY 443 (668)
T ss_pred EccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEeccc-cc
Confidence 344566788888888 8999998888764 44445678999999999999999999999999999863 33222233 45
Q ss_pred CceeEE-eecCCCEEEEecCCC----eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 82 NSVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~----~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+-++.. |+|+++.++-+-.+| .|+++|+..++....-. ... .-.+-+|.|++++|.--+
T Consensus 444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc-cccCcccCCCCcEEEEEe
Confidence 667777 899999999887665 48999998877654332 222 345678999999886443
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=6.5e-09 Score=70.75 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=61.4
Q ss_pred cceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecc
Q 029743 38 EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGIL 110 (188)
Q Consensus 38 ~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~ 110 (188)
..|.+++-+|. .+.+++|+.||.+-+||+++...+...+.. |+.++..+ |+| ++..|++++.||.+..||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 34889998884 466778889999999999986666777777 99999999 988 77899999999999999975
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=9.8e-08 Score=71.72 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=92.0
Q ss_pred eeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
.|||||+.|+.... +..|+++++.++... .+..+........|+|||+.|+..+. .+ .|.+.|+.. +.. +.
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-Ee
Confidence 58999988765532 356888888777643 34333333456689999987776553 33 566667654 222 22
Q ss_pred eeeccCCceeEEeecCCCEEEEecCC---------CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC--
Q 029743 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (188)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 144 (188)
+.. .... ...++|+|++++..... ..|.+.|+.++... .+... . ......|+|||+.|+....+
T Consensus 316 lt~-~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 VVF-HGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-G-VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred Ccc-CCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-C-CcCCeEECCCCCEEEEEEccCC
Confidence 222 1111 22489999988766543 36888898877643 34333 2 23468899999988765533
Q ss_pred -CcEEEEeCCCccC
Q 029743 145 -SMLKLWDLDDILK 157 (188)
Q Consensus 145 -~~i~iwd~~~~~~ 157 (188)
..+.+.++.....
T Consensus 391 ~~~L~~~~l~g~~~ 404 (419)
T PRK04043 391 QSALGIIRLNYNKS 404 (419)
T ss_pred cEEEEEEecCCCee
Confidence 3477777766433
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=1.6e-07 Score=64.46 Aligned_cols=149 Identities=10% Similarity=-0.018 Sum_probs=101.8
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-cCCceeEE-
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-SPNSVDAL- 87 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~- 87 (188)
+..++.|.++++.++..+.....+....-.+.++.++++++++++.+....|-.|.++..++.+...... ....-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 4556777888888776544332222111237899999999999999999999999998755554442220 12222334
Q ss_pred eecCCCEEEEecCCCeEEEEecccCe-eee----ecccCCCcceeEEEeeCCCC--EEEEEeCCCcEEEEeCCCccCCC
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNR-IIQ----PIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~----~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
|+.....+|++..||++.|||++... +.. +-..|.+ .+..+.|++-|. .|...-.-+.+.+-|+++....+
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 78888899999999999999998643 222 2233544 899999998653 44445456789999999876443
No 278
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.92 E-value=4e-08 Score=69.39 Aligned_cols=154 Identities=12% Similarity=0.195 Sum_probs=112.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC----CceeeeecccccceEEEEEEeCCCEEEEecCCCeEE---------------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL--------------- 62 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--------------- 62 (188)
.+.++.+.|++|-..|++.-+.+.. ...++....|..++..+-|+...+.+++.+.|..+.
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 4667778889998889998887653 233444457888888888877666666666554322
Q ss_pred ------------------------EEEeCC-cccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-ee
Q 029743 63 ------------------------LYSWGY-FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-II 115 (188)
Q Consensus 63 ------------------------~~d~~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~ 115 (188)
+..+.. .-..+.++.+ |...+.++ |.+..+++.+|..|..+.+||+-..+ ..
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 111110 1133445567 88889999 78888999999999999999997544 33
Q ss_pred eecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..+.+|.+ .|..+...+--+.|.+++.||.|.+|+++....
T Consensus 234 ~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 234 YELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 45677766 799888888888999999999999999987654
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=2.2e-07 Score=72.25 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=112.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC------------CEEEEecCCCeEEEEEeCCc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------RKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~~~d~~~~ 69 (188)
.|+|.| ++|.|+. ..|.+.|..+-+.++.+.-|...|+.+.|.|-. -.|+++...|.|.+||...
T Consensus 22 Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~- 98 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL- 98 (1062)
T ss_pred ccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-
Confidence 577766 6666554 778899999999999999999999999998732 2467777889999999976
Q ss_pred ccccceeeeccCCceeEE-e---ecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeC
Q 029743 70 KDCSDRFVGLSPNSVDAL-L---KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISH 143 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 143 (188)
...+..+.. +..++..+ | -++. ..|++-.....+.+|+..+|+....+..... ...++.+.| |.+.+..-+.
T Consensus 99 ~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 99 ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEEEEcc
Confidence 455555666 77778777 4 2344 4666777778999999999999888766545 677889988 6677777777
Q ss_pred CCcEEEEeCCC
Q 029743 144 DSMLKLWDLDD 154 (188)
Q Consensus 144 d~~i~iwd~~~ 154 (188)
.|.+.+-+.-.
T Consensus 177 ~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 177 KGFVLSCKDLG 187 (1062)
T ss_pred CceEEEEeccC
Confidence 78777766543
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=8.2e-09 Score=79.47 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=108.3
Q ss_pred EEEeCCCcEEEEEcCC---CceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 11 LGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++......-.+|++.. ......+.+|...++.+.|+|+. ..+++++-|..+..||++....++-.... -......
T Consensus 85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asq 163 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQ 163 (1081)
T ss_pred EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCce
Confidence 3334445667888864 23445566999999999999954 68899999999999999876666666655 4445566
Q ss_pred E-eecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 87 L-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+ |+.....+.+.+..+.|.+||++.|. ++..+++|-. .|+.+.|.. -...+.+.+.|++|+.||..+...+.
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 6 76544455556677789999998754 7777888755 788888865 23467788999999999988765443
No 281
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.86 E-value=1.6e-07 Score=75.99 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=108.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC--c-----eeeeec--ccccceEEEEEEe-CC-CEEEEecCCCeEEEEEeCCcc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN--T-----VQTRSE--FSEEELTSVVLMK-NG-RKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~--~-----~~~~~~--~~~~~v~~~~~~~-~~-~~l~~~~~d~~i~~~d~~~~~ 70 (188)
.+.+.++.+|+++.||.|++..+... . ..+... ....-|..-++.. .+ ..++.+...+.|..||+++.
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~- 1183 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR- 1183 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-
Confidence 34567899999999999999988652 1 111111 1222233333433 22 36788888899999999863
Q ss_pred ccccee--eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC---EEEEEe--
Q 029743 71 DCSDRF--VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK---FLGSIS-- 142 (188)
Q Consensus 71 ~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~-- 142 (188)
.....+ .. ..+.++++ .+|.+..++.|+..|.+.+||++=+.++.........++..+..+|-.+ ..++++
T Consensus 1184 ~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1184 HDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hhHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 322222 22 34678888 6999999999999999999999988888777655445788888887443 444444
Q ss_pred CCCcEEEEeCCCccCCCC
Q 029743 143 HDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 143 ~d~~i~iwd~~~~~~~~~ 160 (188)
..+.|.+|++.++.....
T Consensus 1263 ~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred CCCceeeeecccCcceEE
Confidence 468899999998865443
No 282
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-07 Score=66.53 Aligned_cols=151 Identities=14% Similarity=0.209 Sum_probs=99.0
Q ss_pred eeeccc--CeEEEEeCCCcEEEEEcCCCce-----------------------------------eeee-cccccceEEE
Q 029743 2 TFAADA--MKLLGTSGDGTLSVCNLRKNTV-----------------------------------QTRS-EFSEEELTSV 43 (188)
Q Consensus 2 ~~s~~~--~~l~~~~~d~~i~i~~~~~~~~-----------------------------------~~~~-~~~~~~v~~~ 43 (188)
.|.+++ ..++..+.|.+|++|-+..... .+.+ .+|..-|.++
T Consensus 91 rw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 91 RWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI 170 (433)
T ss_pred eecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee
Confidence 345543 3466668899999998753210 0111 1477778999
Q ss_pred EEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec------cCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeee
Q 029743 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL------SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
.++.|+..++++. |-.|.+|++....+......-. -...|++. |+| ....++..+..|+|++.|++.....
T Consensus 171 S~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 9999988887765 5679999987543433333210 12346777 888 4567888889999999999843211
Q ss_pred ----eecccCC-----------CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 116 ----QPIAEHS-----------EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 116 ----~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..+.... -..|..+.|+++|+++++-. =-+|++||++.
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nm 302 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNM 302 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccc
Confidence 1111100 02588999999999998653 36899999953
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.81 E-value=6.8e-07 Score=61.45 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=97.9
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCcee-eeecccccceEEEEEE-eCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
...+||.|+..|...+|.+.+.+.. +....|...|+-+.=. -..--+..++.|.++++.++... .....+ |...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~-s~~~~~---h~~~ 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD-SNKFAV---HNQN 158 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecC-ccccee---eccc
Confidence 3457899989999999999865432 2333343333222111 11234667888999999998642 222222 3222
Q ss_pred --eeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 84 --VDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 84 --v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.++ ++++++++++.+....|..|.+.... .+... ....+ .-.+..|+.....+|++..||++.|||++....
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-CceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 4555 69999999999999999999887432 23322 22223 346788999999999999999999999997653
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.2e-07 Score=70.70 Aligned_cols=124 Identities=10% Similarity=0.119 Sum_probs=87.2
Q ss_pred CeeecccCeEEEE--eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC---CeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~ 75 (188)
+.|+|+++-+++. ..=..+.|+|++ +.++..+. .++-.++-|+|.|++|+.++.+ |.+.+||+.+ ..++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 3688988776654 345678889866 45555543 5677899999999999987765 7899999986 566666
Q ss_pred eeeccCCceeEEeecCCCEEEEecC------CCeEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
+.. .....+-|+|||+++++++. |+.++||+. +|..+....-.+ ..+.+.|-|
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s--EL~qv~W~P 410 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS--ELLQVEWRP 410 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH--hHhheeeee
Confidence 553 33334448999999998874 677999996 466554433221 256667765
No 285
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=2.1e-06 Score=60.92 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=105.0
Q ss_pred eeecccCeEEEEeC-----CCcEEEEEcC-CCceeeeecccccceEEEEEEeCCCEEEEecC------------------
Q 029743 2 TFAADAMKLLGTSG-----DGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------ 57 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-----d~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------ 57 (188)
+|||||++|++.-. .|.|-|||.. .-+.+..+..|.-....+.+.|+|+.|+++..
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 69999999998743 4789999998 55777788877777889999999988887642
Q ss_pred CCeEEEEEeCCcccccce--e--eeccCCceeEE-eecCCCEEEEecCCCe-------EEEEecccCeeeeeccc-----
Q 029743 58 SGTVLLYSWGYFKDCSDR--F--VGLSPNSVDAL-LKLDEDRVITGSENGL-------ISLVGILPNRIIQPIAE----- 120 (188)
Q Consensus 58 d~~i~~~d~~~~~~~~~~--~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~-------v~~~d~~~~~~~~~~~~----- 120 (188)
+.++.+.|..+ +..+.. + .- |...++.+ +.++|..++.....|. |-+++ .+..+..+..
T Consensus 137 ~psL~~ld~~s-G~ll~q~~Lp~~~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARS-GALLEQVELPPDL-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCC-CceeeeeecCccc-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHH
Confidence 12344444443 343333 2 22 44567777 5777776666554432 33333 2332322222
Q ss_pred --CCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCccCCCCCCCcc
Q 029743 121 --HSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 121 --~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 165 (188)
..+ -+-+|++++++..+++.+ ..+.+.+||..++.......-.+
T Consensus 213 ~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 213 RRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD 259 (305)
T ss_pred HhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc
Confidence 223 488999999998886555 67899999999987665554444
No 286
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.1e-07 Score=71.21 Aligned_cols=136 Identities=11% Similarity=0.064 Sum_probs=95.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-----------CCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~ 69 (188)
+.|||.|.||++-...| |.+|--.+-..++.+. | ..|.-+.|||+.++|++-+. ...+.|||+.+
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t- 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT- 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-
Confidence 46999999999987755 7889866544444443 4 46899999999999998553 25799999987
Q ss_pred ccccceeee-ccCCceeEE--eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 70 KDCSDRFVG-LSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 70 ~~~~~~~~~-~~~~~v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+...+.+.. .....+..+ ||.|++++|.-.. ..|.||+..+..++..-.-.-. .|....|+|.+..||--.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc-cccCcccCCCcceEEEEc
Confidence 566666543 023345566 5899999987766 4688998766443322111112 588889999988887443
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6.9e-07 Score=69.60 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=100.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++.++.|+.+|.|++++.+..- .+...|... ...|.++++|+.||.|.+..+.+. +....+. ...++.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~~~d--f~rpiks 117 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEITQYD--FKRPIKS 117 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccceeEe--cCCccee
Confidence 6789999999999999976433 333335443 568999999999999999998764 4444444 3557777
Q ss_pred E-eecC-----CCEEEEecCCCeEEEEeccc-Ceeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 87 L-LKLD-----EDRVITGSENGLISLVGILP-NRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 87 ~-~~~~-----~~~l~~~~~d~~v~~~d~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+ ++|+ .+.+++|+..| +.++.-+- +.... .+....+ +|.++.|. |.++|-++.+| |+|||+.+....
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG-~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG-PIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc-ceEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence 7 6776 56789999988 77776431 11111 2333434 89999995 77787776555 899999988766
Q ss_pred CCCCCcc
Q 029743 159 SGNNISQ 165 (188)
Q Consensus 159 ~~~~~~~ 165 (188)
..++.+.
T Consensus 193 ~~i~~p~ 199 (846)
T KOG2066|consen 193 TNIPPPS 199 (846)
T ss_pred eccCCCC
Confidence 6555443
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=3.9e-06 Score=69.91 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=96.7
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeeecc--c---------------ccceEEEEEEe-CCCEEEEecCCCeE
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF--S---------------EEELTSVVLMK-NGRKVVCGSQSGTV 61 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~--~---------------~~~v~~~~~~~-~~~~l~~~~~d~~i 61 (188)
|+++++++.|+++.. .+.|+++|..++.. .++.+ . -.....++++| ++..+++...++.|
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence 457777777766654 46788889876543 22211 0 12346899999 55666777778899
Q ss_pred EEEEeCCcccccceeeec--------------cCCceeEE-eecCCCEE-EEecCCCeEEEEecccCeeeeec-------
Q 029743 62 LLYSWGYFKDCSDRFVGL--------------SPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPI------- 118 (188)
Q Consensus 62 ~~~d~~~~~~~~~~~~~~--------------~~~~v~~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~~~~------- 118 (188)
++||.... . +..+.+. .-.....+ ++|+++.| ++-..++.|++||+.++......
T Consensus 708 ~v~d~~~g-~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 708 WEYNISDG-V-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEECCCC-e-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 99998642 1 1222110 01123456 68998854 45567789999999865432110
Q ss_pred ------ccCC-------CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 119 ------AEHS-------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 119 ------~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
.... -....+++++++|..+++-..++.|++||..+..
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 0000 0124688999999988888889999999997654
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=73.45 Aligned_cols=104 Identities=8% Similarity=0.025 Sum_probs=77.3
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe---------cCCCeEEEEEeCCccc-ccceeee
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG---------SQSGTVLLYSWGYFKD-CSDRFVG 78 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~d~~i~~~d~~~~~~-~~~~~~~ 78 (188)
++|.|...|+|.++|+.++...+.+..|...|.++.|..+...+-.+ +.-+.+.+-|++++.. ..+.+++
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 57888999999999999999888899999999999997655444222 1223567778876322 1222233
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~ 112 (188)
....+|+.+ .+..|+|++..-.+.-+.+||+++.
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 145678888 7899999999999999999998543
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=4.6e-06 Score=58.46 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=88.6
Q ss_pred CeeecccCeEEEEeCC--------CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d--------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~ 71 (188)
+++.|+|++.++.... +.|..++.. ++...... .-.....++|+|+++.|+ +-+..+.|..+++...+.
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3678899876665543 457777766 45433333 345678999999998776 566778899999864332
Q ss_pred cc---ceeeeccC--CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee-CCCCEEEEE
Q 029743 72 CS---DRFVGLSP--NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (188)
Q Consensus 72 ~~---~~~~~~~~--~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 141 (188)
.+ +.+..... .....+ +..+|++.++....+.|.+++.+ |+.+..+..... .+++++|. ++.+.|...
T Consensus 169 ~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 11 12211012 235566 68899988887788999999987 888877776634 78999994 566666543
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.74 E-value=3.3e-08 Score=76.26 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=109.1
Q ss_pred eeecc-cCeEEEEeCCCcEEEEEcCCCc-eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~-~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|+|+ ...+++++-|..++.||+++.. +......-......++|+-....+.+.+..+.|.+||.+.+..++..+++
T Consensus 121 n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~- 199 (1081)
T KOG0309|consen 121 NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG- 199 (1081)
T ss_pred ccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc-
Confidence 35553 4568899999999999998753 44444444566788999875555555666678999999988888888888
Q ss_pred cCCceeEE-ee-cCCCEEEEecCCCeEEEEeccc----------------------------------------------
Q 029743 80 SPNSVDAL-LK-LDEDRVITGSENGLISLVGILP---------------------------------------------- 111 (188)
Q Consensus 80 ~~~~v~~~-~~-~~~~~l~~~~~d~~v~~~d~~~---------------------------------------------- 111 (188)
|...+..+ |. .....+.+.+.|++|+.||-..
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence 87777777 53 3455778888999999998621
Q ss_pred ---------CeeeeecccCCCcceeEEEeeCCC----------CEEEEEeCCCcEEEEeCCCc
Q 029743 112 ---------NRIIQPIAEHSEYPIESLALSHDR----------KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 112 ---------~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~ 155 (188)
..++.++.+|.+ .|....|...+ -.|++-+.|..+++|-+.+.
T Consensus 280 d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 280 DLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 123555667765 55555554321 26899999999999987754
No 292
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.69 E-value=2.1e-06 Score=64.89 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=60.1
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
....+.++ ++|+...++.|+.||.|.+||...+..... + . ...+..++|||+|..+++|+..|.+.+||+.-..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-A-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-e-cccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 45566777 799999999999999999999876643322 2 2 2367899999999999999999999999987544
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.68 E-value=1.3e-06 Score=65.12 Aligned_cols=136 Identities=9% Similarity=0.029 Sum_probs=90.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
+..++.++.++.++.+|.++++.+..... . ....+. ..+..+++++.+|.+..+|..+ ++.+..... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRS-GSELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCC-CcEEEcccc-ccCCccc
Confidence 45777788899999999999987766542 1 112222 3567888888999999999976 344332211 1111111
Q ss_pred EeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 87 ~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
.....+..+++++.+|.|+++|..+++.+..+..+...-.....+. + ..|+.++.||.|+.|
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 1112467899999999999999999999888776543112233333 3 357788899998876
No 294
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=7.7e-07 Score=67.19 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
..+..|.+++++|+.+.++.|+.||.|.+||.... +..... ..-.+..+ |+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC---eeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 46778999999999999999999999999998642 333333 44455666 899999999999999999999854
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.66 E-value=2.4e-06 Score=63.54 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=99.6
Q ss_pred eeecccCeEEEEe-----------CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec--CCCeEEEEEeCC
Q 029743 2 TFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGY 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~-----------~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~ 68 (188)
.|++.|++|++-. ...+++++++...... ......++|...+|.|.++.+++.+ ....+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-eeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 4677787765432 1356788887744332 2225578999999999988776654 567889999873
Q ss_pred cccccceeeeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeee-eecccCCCcceeEEEeeCCCCEEEEEe-
Q 029743 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSIS- 142 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~- 142 (188)
. +.... ....-..+ |+|.+++++.++-+ |.+.+||......+ ..+.+. ..+-+.|+|+++++.+..
T Consensus 308 --N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 308 --N-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred --c-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecCC
Confidence 4 33332 22333444 89999999887644 67999998754433 356555 245568999999987654
Q ss_pred -----CCCcEEEEeCCCcc
Q 029743 143 -----HDSMLKLWDLDDIL 156 (188)
Q Consensus 143 -----~d~~i~iwd~~~~~ 156 (188)
.|..|.|||+....
T Consensus 380 s~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccccCcceEEEEecCch
Confidence 47889999987654
No 296
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.65 E-value=7e-06 Score=60.00 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=79.8
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC----------CCeEEEEEeCCcc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFK 70 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~ 70 (188)
++++++..... ++|.+.|..+++.+..+..-..+ ..+ ++|+++.|+++.. +..|.+||..+ .
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-H 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-C
Confidence 44555555443 89999999999988888743333 235 9999998887765 67899999986 3
Q ss_pred cccceeeeccCC-------ceeEE-eecCCCEEEEec-C-CCeEEEEecccCeeeeecccC
Q 029743 71 DCSDRFVGLSPN-------SVDAL-LKLDEDRVITGS-E-NGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 71 ~~~~~~~~~~~~-------~v~~~-~~~~~~~l~~~~-~-d~~v~~~d~~~~~~~~~~~~~ 121 (188)
+.+..+.. ... ....+ ++|+|+++++.. . +..|.+.|+.+++.+.++...
T Consensus 88 ~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 88 LPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 55544432 111 11133 699999998776 3 789999999999988877654
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.7e-08 Score=78.28 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=102.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC--eEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+-+.+.|+.|+..|.|+++++.+|.......+|.++|+-+.-+.+|..+.+.+.-. ...+|++.........+.+
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 47888999999999999999999999999999999999999999999998777655433 4678998754455555543
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC---CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
-.++ |+...+.-+.|+......+||++++.++.++-... .+.-+...|+|+...++ .|| -+||++.
T Consensus 1187 -----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1187 -----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred -----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence 2345 65544445556665678899999998776632111 12235567777766554 233 2455554
Q ss_pred c
Q 029743 155 I 155 (188)
Q Consensus 155 ~ 155 (188)
.
T Consensus 1257 ~ 1257 (1516)
T KOG1832|consen 1257 P 1257 (1516)
T ss_pred H
Confidence 4
No 298
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.62 E-value=2.7e-06 Score=63.90 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=91.7
Q ss_pred eeecccCeEEEEe---CC-CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCccccccee
Q 029743 2 TFAADAMKLLGTS---GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~---~d-~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
+|+|+++.++... .. ..++++++.+++....+. ....-....|+|||+.|+ +...|+...+|-++..+..+..+
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L 277 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec
Confidence 4788888876553 22 358899999876655544 344556788999998766 45566654444443323334444
Q ss_pred eeccCCceeEE-eecCCCEEEEecC-CCe--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-CCc--EEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DSM--LKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~i 149 (188)
.. ..+.-..- |+|+|++++..+. .|. |.++++...... .+....+ .-....|+|||++++..+. +|. |.+
T Consensus 278 t~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~-~~~~p~~SpdG~~i~~~~~~~g~~~i~~ 354 (425)
T COG0823 278 TN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGG-GNSNPVWSPDGDKIVFESSSGGQWDIDK 354 (425)
T ss_pred cc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCC-CCcCccCCCCCCEEEEEeccCCceeeEE
Confidence 43 22222222 7999998887664 343 777777655542 3322222 2236789999999987764 344 666
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
.|+.+..
T Consensus 355 ~~~~~~~ 361 (425)
T COG0823 355 NDLASGG 361 (425)
T ss_pred eccCCCC
Confidence 6665444
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.4e-06 Score=66.72 Aligned_cols=141 Identities=11% Similarity=0.235 Sum_probs=101.9
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC-----CCEEEEecCCCeEEEEEeCCcccccce-eeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~ 79 (188)
+|.++++|+.||+|.|-.+-+.+...+.. ...++.+++++|+ .+.+++|+..| +.++.-+--+..... +..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 69999999999999999988877666555 4568999999997 57899999988 777764332222222 444
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-----cceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
..++|.++ | .|.+++=++..| |++||+.+++.+..+..... .-...+.|.++.+.++ |...+|+|..++
T Consensus 159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 67888888 5 477888888877 89999988877766544322 1133577877665443 456678888888
Q ss_pred C
Q 029743 154 D 154 (188)
Q Consensus 154 ~ 154 (188)
.
T Consensus 234 ~ 234 (846)
T KOG2066|consen 234 K 234 (846)
T ss_pred c
Confidence 3
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.7e-06 Score=62.60 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=66.5
Q ss_pred CeeecccC-eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|+|||..+ ++..++.+.+|+|.|+++.........+ .++++++|.-+. ++|+.|..+|.|.+||++.....+..+..
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence 57899766 7888999999999999998888887766 789999998866 56778888999999999876555554433
Q ss_pred -ccCCceeEE
Q 029743 79 -LSPNSVDAL 87 (188)
Q Consensus 79 -~~~~~v~~~ 87 (188)
....++..+
T Consensus 278 ~~t~~pv~~i 287 (463)
T KOG1645|consen 278 NVTINPVHKI 287 (463)
T ss_pred hhccCcceee
Confidence 123445544
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.2e-06 Score=62.97 Aligned_cols=159 Identities=10% Similarity=0.042 Sum_probs=108.5
Q ss_pred eeecccCeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEe-CC--C-EE-EEecCCCeEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NG--R-KV-VCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~-~l-~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
+.+-++.++.+.+. |..++++|+.+-..+..++- ......+.|.. .| . .+ +..-.++.+.++|-.....+...
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 45667888888777 99999999987554433331 11112233322 23 1 23 33445688999997654445555
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc------Ceeeee---------cccCCCcceeEEEeeCCCCEEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQP---------IAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~------~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
+.+.|..+|.++ +.+.+..+++....|.|.-|.... .+.... +..... ...++.|+|++..+.
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSPDGAQIS 217 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccccc-CccceEEccccCccc
Confidence 555588999999 799999999999999999998762 111111 111112 567899999999999
Q ss_pred EEeCCCcEEEEeCCCccCCCCCC
Q 029743 140 SISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
+-+.|..|++++++++...+.+.
T Consensus 218 tl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccCcccEEEEEEeccchhhhhhh
Confidence 99999999999999987665443
No 302
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.9e-06 Score=64.70 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=84.7
Q ss_pred eeecccCeEEEEeC-CC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGTSG-DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+|||||++|+.... |+ .|+++|+..+...+ +....+.-..-.|+|+|+.++.. +..|.-.||-++..+...+.+.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 69999999887643 44 56677877766443 44333444477899999887754 4455545554443344445554
Q ss_pred eccCCc-eeEEeecCCCEEEEecC-CCe--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 78 GLSPNS-VDALLKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 78 ~~~~~~-v~~~~~~~~~~l~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
. .... ..-.++|+|++++..+. +|. |.+.++.++...+.+... . ......|.++++.++..+
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~-~-~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST-Y-LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc-c-cCCCCCcCCCCceEEEec
Confidence 4 3222 23337999999887764 344 667777666544444433 2 345667888888776544
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.53 E-value=6e-06 Score=67.76 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=97.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-----------------------Cceeeeecc----------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----------------------NTVQTRSEF---------------------- 35 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-----------------------~~~~~~~~~---------------------- 35 (188)
++||||+.+|+..+.++++.+..-.- |+....|.|
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 47999999999999988887764210 111111110
Q ss_pred --cccceEEEEEEeCCCEEEEecC------CCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecC---CCe
Q 029743 36 --SEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGL 103 (188)
Q Consensus 36 --~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~ 103 (188)
....-..+.|..||.++++.+- -..+++|+-+ +....+-.. -.+--.++ |-|.|.++++... ...
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 1224467889999999998764 2578899854 333332222 22333445 7899999998874 345
Q ss_pred EEEEecccCeeeeeccc---CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 104 ISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|.+|. ++|-....|.- +.+..|..+.|++|+..|+..-.|. |.+|-..+..
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 77776 34433322221 2234799999999999999877555 9999887754
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=2.5e-05 Score=54.31 Aligned_cols=139 Identities=8% Similarity=0.067 Sum_probs=88.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ceeeee---cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++.+++|+.||.. .|..|.|-..++. ..+... +.....=.-++|+||+..|+.+...|+|++||+- +..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEE
Confidence 3567889888875 5677777766543 222222 2233345789999999999999999999999985 233333
Q ss_pred eee------ccCCceeEE-e-ecC-----CCEEEEecCCCeEEEEecccC-----e--eeeecccCCCcceeEEEeeCCC
Q 029743 76 FVG------LSPNSVDAL-L-KLD-----EDRVITGSENGLISLVGILPN-----R--IIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 76 ~~~------~~~~~v~~~-~-~~~-----~~~l~~~~~d~~v~~~d~~~~-----~--~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
+.+ .....|..+ | .+. ...|++-...|.++=|-+..+ + ....+..|....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 012345555 4 221 224666777888877765322 1 2233434433479999999998
Q ss_pred CEEEEEe
Q 029743 136 KFLGSIS 142 (188)
Q Consensus 136 ~~l~~~~ 142 (188)
+.|++|+
T Consensus 160 ~LLlVgG 166 (282)
T PF15492_consen 160 RLLLVGG 166 (282)
T ss_pred CEEEEec
Confidence 8888776
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.50 E-value=6.4e-06 Score=67.63 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=96.2
Q ss_pred CeeecccCeEEEEeC------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~ 71 (188)
++|-.||+++|+.+. -+.++||+-+ |....+...-.+--.+++|.|.|++|++... ...|.+|.-+ |.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--Cc
Confidence 468889999998864 2578999954 6655444433444568899999999988765 3456666643 22
Q ss_pred cccee----eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeCCC-CEEEEEeC
Q 029743 72 CSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR-KFLGSISH 143 (188)
Q Consensus 72 ~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 143 (188)
.-..| .. ....+..+ |++++..|+....+. |.+|-..+.. ..+.+.......+..+.|+|.. ..|.....
T Consensus 292 rhgeF~l~~~~-~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 292 RHGEFTLRFDP-EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred EeeeEecCCCC-CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 11112 12 34568888 899999999977555 9999887654 3333332222245569999954 34666666
Q ss_pred CCcEEEEeCC
Q 029743 144 DSMLKLWDLD 153 (188)
Q Consensus 144 d~~i~iwd~~ 153 (188)
++.+..+++.
T Consensus 370 ~g~~~~~~~~ 379 (928)
T PF04762_consen 370 NGQYEIYDFA 379 (928)
T ss_pred CCcEEEEEEE
Confidence 6777665544
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=2e-06 Score=66.74 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=92.8
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--------------cccceeeeccCCceeEE-eecCCCEEEEecCC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (188)
.....++.|+....++++|+.||.+++..+.+.. ..-+++.+ |...|..+ |+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence 3467899999999999999999999999886421 12345678 99999988 88888999999999
Q ss_pred CeEEEEecccCeeeeeccc-CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 102 GLISLVGILPNRIIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 102 ~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
|.|.+|-+-.+.-...+.. .....|.+++|..+|..++..-.||.|.+=.+..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 9999999988875544422 2233688999999999998888888887755443
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.48 E-value=9e-05 Score=51.46 Aligned_cols=145 Identities=19% Similarity=0.112 Sum_probs=91.1
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeee-cccc---cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSE---EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.+..++++..++.++.+|..+|+.+... .... ...........+..++.+..++.+..+|+.+ +..+..... ..
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~-~~ 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT-GKLLWKYPV-GE 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT-TEEEEEEES-ST
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC-CcEEEEeec-CC
Confidence 4556677777889999999999888774 3221 1122333333578888888899999999986 455444433 22
Q ss_pred Cc----e-------eEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 82 NS----V-------DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 82 ~~----v-------~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
.. + ..+...++ .++.+..++.+..+|+.+++.+.... . . .+.. ....++..|+.++.++.|..|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~-~-~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I-S-GIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S-S--ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C-C-CccC-CceeeCCEEEEEeCCCEEEEE
Confidence 11 1 12222344 77777777754444999998665333 2 2 2333 134567788877789999999
Q ss_pred eCCCccC
Q 029743 151 DLDDILK 157 (188)
Q Consensus 151 d~~~~~~ 157 (188)
|+++++.
T Consensus 228 d~~tG~~ 234 (238)
T PF13360_consen 228 DLKTGKV 234 (238)
T ss_dssp ETTTTEE
T ss_pred ECCCCCE
Confidence 9998753
No 308
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.47 E-value=2.8e-05 Score=58.00 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=93.9
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
.+..+++++.++.|+.+|..+|+.+............+. .++..++.++.++.+..+|..+ ++.+..... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAED-GKELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCC-CcEeeeecc--Cceee
Confidence 466788888889999999999998876653322222222 2577888888999999999876 444433322 12222
Q ss_pred EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcce-----eEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+...-.+..++.++.++.|+.+|.++|+.+..+..... .. ...... + ..++.+..++.+..+|++++..
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCE
Confidence 21111355777788899999999999988776654321 11 111222 2 4667777889999999887754
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.47 E-value=2.6e-05 Score=59.01 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=81.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|.++|+|++++.+ .+|...|+.....+... .+.-...+|.+.++ +++-...++|.++.--. ......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~-~~~~k~i~~-- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK-NEVVKSIKL-- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE-E-TT-------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCc-cccceEEcC--
Confidence 4689999999984 45888888844333322 23445788988544 66666688899974221 233334442
Q ss_pred CCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...+..+|. |.+|...+.+ .|.+||..+++.++.+... +|..+.|++++.+++..+.+ .+.+++.+..
T Consensus 108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 234566665 8777776655 7999999999999998754 48999999999999888744 6777765543
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.46 E-value=2e-05 Score=61.06 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=65.3
Q ss_pred CcEEEEEcCC-----CceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccc-----------ccceeeec
Q 029743 17 GTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----------CSDRFVGL 79 (188)
Q Consensus 17 ~~i~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~-----------~~~~~~~~ 79 (188)
+.|.+.|..+ ...+..++ -....+.+.++|||+++++++. +.++.++|+..... ......-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 5577778776 34444444 3456789999999998877655 78999999975322 1222222
Q ss_pred cCCceeEEeecCCCEEEEecCCCeEEEEeccc
Q 029743 80 SPNSVDALLKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
..++....|.++|....+-..|..|..|++..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 34556666888888777888899999999875
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=1.2e-05 Score=63.41 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=100.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccc-eEEEEEEeCCCEEEEecCCC-----eEEEEEeCCc-----c
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYF-----K 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~-----~ 70 (188)
++++.+..++.|+.+|.|.+++-. -+.+..++.+... |..+....+...|++-+.|+ .+++|+++.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 578889999999999999888732 3444666766666 44444444446777766654 5899999642 1
Q ss_pred ccc---ceee---eccCCceeEE-eecCCCEEEEecCCCeEEEEecc---cCeeeeecccCCCcceeEEEeeCCCCEEEE
Q 029743 71 DCS---DRFV---GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 71 ~~~---~~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.++ +.+. +....++.++ .+.+-+.+++|-.+|.|..+.-+ .......+....+.+|+++++..+++.++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1111 1023456666 57888899999999999888522 111122222222349999999999987554
Q ss_pred EeCCCcEEEEeCCCcc
Q 029743 141 ISHDSMLKLWDLDDIL 156 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (188)
+..-..|.+|.+....
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 5556689999998554
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.44 E-value=5.7e-05 Score=52.47 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=92.4
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee-eeccCCc
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNS 83 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~ 83 (188)
++++.+++++.++.|+.||..+|+.+..... ...+.... ...+..++.+..++.+..+|..+ +..+... .. ....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~-~~~~ 109 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLT-SSPP 109 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTT-SCEEEEEEE--SSCT
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCC-cceeeeeccc-cccc
Confidence 3677788888999999999999998877664 22222212 23455666666788999999876 4555542 32 2111
Q ss_pred --eeEE--eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc---ce-------eEEEeeCCCCEEEEEeCCCcEEE
Q 029743 84 --VDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY---PI-------ESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 84 --v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~---~v-------~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
.... ....+..++++..++.|..+|+++|+.+......... ++ ..+.+. ++ .+..++.++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVA 187 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEE
Confidence 1111 2335888888888999999999999987776553210 11 222332 44 6666666775444
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
+|+.++.
T Consensus 188 ~d~~tg~ 194 (238)
T PF13360_consen 188 VDLATGE 194 (238)
T ss_dssp EETTTTE
T ss_pred EECCCCC
Confidence 4888876
No 313
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.43 E-value=1.6e-05 Score=63.50 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=92.7
Q ss_pred CCCcEEEEEcCCCceeeeecccccc-eEEEEEEe-----CCCEEEEecCCCeEEEEEeCCcccccceeee---ccCCcee
Q 029743 15 GDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG---LSPNSVD 85 (188)
Q Consensus 15 ~d~~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~v~ 85 (188)
....|+-.|++.|+.+.....+... |..++-.. .....+.|-.+..+..||.+..+..+..-.. .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999988876544 55544321 1234566777888999999875433221111 0233455
Q ss_pred EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|+......+|++|+.+|.||+||--..+....+.+-.. +|.+|..+.||++|+..+ +..|.++++.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 55555666999999999999999433233344555534 999999999999987665 5667777753
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.42 E-value=0.0002 Score=50.21 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=89.9
Q ss_pred eee-cccCeEEEEeCCCcEEEEEcCCCceeeeecc-----cccceEEEEEEeCCCEEEEecCC--------CeEEEEEeC
Q 029743 2 TFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSWG 67 (188)
Q Consensus 2 ~~s-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~ 67 (188)
++. +++ .|+.+.. +.+.++|..+++....... .....+.+++.|+|+..++.... +.+..++..
T Consensus 46 ~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 46 AFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp EEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred EEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 345 454 4444455 4456669888755433332 34568899999999977765443 345555544
Q ss_pred CcccccceeeeccCCceeEE-eecCCCEEE-EecCCCeEEEEecccCe-------eeeecccCCCcceeEEEeeCCCCEE
Q 029743 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNR-------IIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
+.. ..+.. .-.....+ ++|+++.|+ +-+..+.|..+++.... ....+....+ ..-.+++..+|+..
T Consensus 124 --~~~-~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 124 --GKV-TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLW 198 (246)
T ss_dssp --SEE-EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EE
T ss_pred --CeE-EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEE
Confidence 232 33333 33456677 899998765 55678889999986322 1222222212 36789999999888
Q ss_pred EEEeCCCcEEEEeCCC
Q 029743 139 GSISHDSMLKLWDLDD 154 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (188)
++.-..+.|.+++.+.
T Consensus 199 va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEEETTTEEEEEETTS
T ss_pred EEEcCCCEEEEECCCc
Confidence 8777889999999873
No 315
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-06 Score=66.77 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=69.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceE-EEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|+|.-.++|.+..+|.|.+..+. .+.+.+++.|...++ +++|.|||+.|++|-.||+|++-|+..+.........
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s- 103 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS- 103 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc-
Confidence 4689999999999999999999888 677788887778887 9999999999999999999999999875444443333
Q ss_pred cCCceeEE
Q 029743 80 SPNSVDAL 87 (188)
Q Consensus 80 ~~~~v~~~ 87 (188)
....+.++
T Consensus 104 ~e~~is~~ 111 (665)
T KOG4640|consen 104 VETDISKG 111 (665)
T ss_pred cccchhee
Confidence 45566666
No 316
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.4e-07 Score=67.51 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=88.4
Q ss_pred eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc------ccceeeeccCCceeEE-eecCCCEEEEecCCCe
Q 029743 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (188)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~ 103 (188)
..+.+|+..|..++--.+.+.+++++.|.+|++|.++..+. +..+++. |+.++..+ |-.+-+++++ .|+.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee--ccCc
Confidence 45668998899888777889999999999999999975443 4445677 89999999 8777777654 4678
Q ss_pred EEEEecccCeeeeecc-cCCCcceeEEEeeC--CCCEEEEE-eCCCcEEEEeCCCcc
Q 029743 104 ISLVGILPNRIIQPIA-EHSEYPIESLALSH--DRKFLGSI-SHDSMLKLWDLDDIL 156 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~iwd~~~~~ 156 (188)
|++||.--++++.++. ....+.+..+..-+ +...++.+ +...+|+++|.+...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 9999988777766442 22222344444444 34444444 678999999988653
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=0.00017 Score=49.90 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=95.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
..+++.|+..+.+.-.|..+|+.+..-. ...++.+-+.- -|++++.|...|.+++.+..+ +.....+.....-.+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccce
Confidence 3457788888999999999998876543 23344443333 477899999999999999987 45555554312333444
Q ss_pred EeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 87 ~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
...+++..+.+|+.|+..+..|.++..++...+-... ...+-+..|-...|..+...|.|.--.
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceEEEEc
Confidence 4789999999999999999999999888877655422 333445566223344444445444333
No 318
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.8e-05 Score=59.77 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=94.1
Q ss_pred eeecccCeEEEEeC----------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCC
Q 029743 2 TFAADAMKLLGTSG----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~ 68 (188)
.|-.+|.+|+.--. -..+-|+.++.....-..-.....|...+|-|.|+.+++-+. ..++.+|.+.+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 35556777765321 123445555443322222235678999999999988776443 35789998873
Q ss_pred cc---cccceeeeccCCceeEE-eecCCCEEEEec---CCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEE
Q 029743 69 FK---DCSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 69 ~~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.. ..+..+. ......+ |+|.|++++.+. ..|.+.++|+....+..+ ...|. ..+.+.|.|.|+++++
T Consensus 480 ~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 480 NIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF--AATEVEWDPTGRYVVT 554 (698)
T ss_pred CCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc--ccccceECCCCCEEEE
Confidence 22 2222232 2445667 799999988764 568899999875333222 23342 5688999999999998
Q ss_pred EeC------CCcEEEEeCCCc
Q 029743 141 ISH------DSMLKLWDLDDI 155 (188)
Q Consensus 141 ~~~------d~~i~iwd~~~~ 155 (188)
++. |..-++|+++..
T Consensus 555 ~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 555 SSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred eeehhhhccccceEEEEeecH
Confidence 874 556788887754
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.34 E-value=2.6e-06 Score=59.96 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=96.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC---ceeeeeccc-----ccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFS-----EEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.|+.|.+.++++ .|-.|.+|++.-. -.+-.++.| ..-|++..|+|.. ..+..++..|.|++-|+++..-+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 466677777765 4578899987632 112222333 3457888999954 67778888999999999843211
Q ss_pred cce---------------eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC-eeeeecccCC------------C
Q 029743 73 SDR---------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHS------------E 123 (188)
Q Consensus 73 ~~~---------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~------------~ 123 (188)
... +.+ ....+..+ |+++|+++++-.. -+|++||.+.. .++.++..|. +
T Consensus 258 dn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 110 112 23345666 7999999887654 47999999864 4666664332 1
Q ss_pred --cceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 124 --~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+.-..+.|+.|.+.+++|+..+..-+|-+.
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeeccc
Confidence 122357788888899999887777777533
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.34 E-value=0.00016 Score=51.55 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=95.0
Q ss_pred Ceeec-ccCeEEEEeCCC-cEEEEEcCCCceeeeecccccce--EEEEEEeCCCEEEEecC-----CCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEEL--TSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~ 71 (188)
++.+| .+..++.+-.-| ...+||..+++....+....+.- -.-+|++||++|++.-. .|.|-+||....-.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35677 555666666655 46789999998877765433322 24579999999998654 47899999984445
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecC-------CC-----------eEEEEecccCeeeeecc----cCCCcceeE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-------NG-----------LISLVGILPNRIIQPIA----EHSEYPIES 128 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-------d~-----------~v~~~d~~~~~~~~~~~----~~~~~~v~~ 128 (188)
.+..+.. +.-....+ +.|||+.|+++.. .| .+.+.|..+|+.+.+.. -|.- .|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l-SiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL-SIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc-ceee
Confidence 5666666 66555666 7999987776632 12 25566677888776632 2433 6999
Q ss_pred EEeeCCCCEEEEEe
Q 029743 129 LALSHDRKFLGSIS 142 (188)
Q Consensus 129 ~~~~~~~~~l~~~~ 142 (188)
+++.++|..++..-
T Consensus 168 La~~~~G~V~~a~Q 181 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQ 181 (305)
T ss_pred EEecCCCcEEEEEe
Confidence 99999987666443
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.31 E-value=6.6e-05 Score=58.34 Aligned_cols=146 Identities=10% Similarity=0.047 Sum_probs=92.6
Q ss_pred ecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-------------------------
Q 029743 4 AADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------- 57 (188)
Q Consensus 4 s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------- 57 (188)
+|||+.+...+ ..+.+.+.|.++.+...++.- ......+.++|+|+++++.+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 45666553332 235667778777666555542 224466777888887776641
Q ss_pred ---------------CCeEEEEEeCC----cccccceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCee--
Q 029743 58 ---------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI-- 114 (188)
Q Consensus 58 ---------------d~~i~~~d~~~----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~-- 114 (188)
++.|.+.|..+ ....+..+. -......+ ++|||+++++++ .+.+|.++|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 23466666553 112222222 33445666 799999887766 589999999987442
Q ss_pred ----------eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 115 ----------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 115 ----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..+..-..+ ....+|.++|....+--.|.+|-.|++.+
T Consensus 358 ~~~~~~~~~vvaevevGlG--PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLG--PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCC--cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333222 34578999998778888999999999987
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=9.8e-06 Score=62.59 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=84.4
Q ss_pred cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE--eecCCCEEEEecCCCeEEEEecccCe
Q 029743 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNR 113 (188)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~ 113 (188)
+...|.--+++..+++++.|+.-|.+++|+-..+........+ ...+.++ .+++..+++.|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~--~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG--ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC--ccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 4455655667778999999999999999997642222222222 2333333 58899999999999999999887643
Q ss_pred ee-----eec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 114 II-----QPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 114 ~~-----~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+. ... ..|+. .|++++|++|+..+.+|...|+|..-.+..
T Consensus 110 p~~~~~~t~~d~~~~~-rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKC-RVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCc-eEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 111 12433 899999999999999999999999988887
No 323
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=8.5e-06 Score=54.93 Aligned_cols=110 Identities=26% Similarity=0.464 Sum_probs=82.5
Q ss_pred CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEe--ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcc
Q 029743 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125 (188)
Q Consensus 48 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 125 (188)
-+..+++|+.+|.|.+|.....+........ ....+.+.+ -.++.+..+++.+|.|+.|++...+.+.....|...+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3568899999999999998755555554444 455555554 3456688999999999999999888777666665236
Q ss_pred eeEEEeeCCCCEEEEE--eCCCcEEEEeCCCccCC
Q 029743 126 IESLALSHDRKFLGSI--SHDSMLKLWDLDDILKG 158 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~ 158 (188)
+..+.....+++++.+ +.|..++.|++......
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 6667777777788877 88999999998876543
No 324
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.21 E-value=3e-05 Score=54.77 Aligned_cols=119 Identities=10% Similarity=0.174 Sum_probs=78.5
Q ss_pred ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee--eecc-----CCceeEE-eecC-CCEEEEecCCCeEE
Q 029743 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLS-----PNSVDAL-LKLD-EDRVITGSENGLIS 105 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~-----~~~v~~~-~~~~-~~~l~~~~~d~~v~ 105 (188)
.|+.-+.++.++.+...++++. |-.|.+|++.......... ++ | ...+++. |+|. ...+...+..|.|+
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 4666678888888877777654 5679999986543333332 22 2 2346666 8884 55777778899999
Q ss_pred EEecccCee------eeec--cc--C---C--CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 106 LVGILPNRI------IQPI--AE--H---S--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 106 ~~d~~~~~~------~~~~--~~--~---~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+-|++.... +... .+ + . -..|..+.|+++|+++++-. --+|++||.+...
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 999984321 1111 10 0 0 02588899999999988654 4589999998654
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.3e-05 Score=62.03 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=82.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce----e
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----F 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~ 76 (188)
+++..+++++.|+..|.+++|+-..++....-. +....+..+..+++..+++.|+..|.|.++-+......-.. .
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 355678999999999999999977665543222 34455667778888899999999999999988653222222 2
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
..+|+..|+++ |++++..+++|...|+|.+-.+.+
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22267789999 999999999999999998777655
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.20 E-value=0.00024 Score=53.41 Aligned_cols=135 Identities=11% Similarity=0.054 Sum_probs=87.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
+..++.++.++.++.+|..+|+.+...... ....+ ...+..++.++.++.+..+|..++ ..+-.... .....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~--~~~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~-~~~~~-- 327 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDF--AVDGGRIYLVDQNDRVYALDTRGG-VELWSQSD-LLHRL-- 327 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCc--EEECCEEEEEcCCCeEEEEECCCC-cEEEcccc-cCCCc--
Confidence 456777788899999999999877654321 11122 224677888888999999998763 33222111 11111
Q ss_pred Eeec--CCCEEEEecCCCeEEEEecccCeeeeecccCCCccee-EEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 87 LLKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 87 ~~~~--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
..+| .+.+++.++.+|.|+..|..+|+.+........ .+. ...+ .+..|+.++.||.|+.++.
T Consensus 328 ~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 1122 356788899999999999999998776654322 222 2223 2447888899999988764
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.19 E-value=3.4e-05 Score=61.54 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=101.7
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
++..++.|+....+..+|+.+.+..+...-..+.|.-+ ..+++.+++|...|+|.+-|.++ -+.+..+.. |.+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCc-Cceeeeeec-ccccee
Confidence 45567777777888888988877665544333334444 44789999999999999999976 577888888 877665
Q ss_pred EEeecCCCEEEEecCC---------CeEEEEecccCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEe
Q 029743 86 ALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d---------~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (188)
. |.-.|+.|++++.. .-|+|||++.-+.+..+..+.+ ..-+.|+|.- ..+++++..|...+-|
T Consensus 222 D-fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 222 D-FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred e-eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeecc
Confidence 4 46678888888753 3478999998887777766644 3557788843 4677777888888877
No 328
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0009 Score=50.11 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=105.0
Q ss_pred CeeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCcccccc--
Q 029743 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-- 74 (188)
++++|+++.+..+.. ++.+.+.|..++........-..+ ..+++.|+|..++.+. .++.+.+.|.... ...+
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468899988887765 688999998888887775532233 8999999999766655 6789999997542 2221
Q ss_pred ---eeeeccCCceeEEeecCCCEEEEecCC---CeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEe-CCCc
Q 029743 75 ---RFVGLSPNSVDALLKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (188)
Q Consensus 75 ---~~~~~~~~~v~~~~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~ 146 (188)
.... ...+..-.++|+|.++...... +.+...|..++..... +..... ....+..+|+|..+.+.. ..+.
T Consensus 199 ~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~ 276 (381)
T COG3391 199 VGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGT 276 (381)
T ss_pred ccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCe
Confidence 1221 2233333379999977666544 5899999888776654 333322 356789999999987774 4478
Q ss_pred EEEEeCCCccC
Q 029743 147 LKLWDLDDILK 157 (188)
Q Consensus 147 i~iwd~~~~~~ 157 (188)
+.+-|..+...
T Consensus 277 V~vid~~~~~v 287 (381)
T COG3391 277 VSVIDGATDRV 287 (381)
T ss_pred EEEEeCCCCce
Confidence 88888877543
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=5.1e-05 Score=60.36 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=59.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
++|+|..-.|+.|-.-|.+.+|...+.+.......|+.++..+.|+++|..++++..-|.+.+|..+
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5789988888898888999999987766655666899999999999999999999999999999886
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=7.3e-07 Score=68.04 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=95.2
Q ss_pred eeec-ccCeEEEEe----CCCcEEEEEcCCC--ceee--eec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc
Q 029743 2 TFAA-DAMKLLGTS----GDGTLSVCNLRKN--TVQT--RSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 2 ~~s~-~~~~l~~~~----~d~~i~i~~~~~~--~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
+|++ |.+.||+|- .|..+.|||+.++ .+.. .+. +......+++|-.+.+.+.+|.....++++|++. .
T Consensus 109 AwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s 186 (783)
T KOG1008|consen 109 AWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--S 186 (783)
T ss_pred ccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--h
Confidence 4555 556677763 3568999999875 2211 122 2334566888988888999999999999999984 2
Q ss_pred ccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEe-ccc-CeeeeecccCCC---cceeEEEeeCCCC-EEEEEe-
Q 029743 72 CSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVG-ILP-NRIIQPIAEHSE---YPIESLALSHDRK-FLGSIS- 142 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d-~~~-~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~~- 142 (188)
+.+...- .+..+..+ ..| .+.|+++.. |+.|.+|| .+. ..++..+..... .++..++|+|... .+++..
T Consensus 187 ~~~~~sv-nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 187 LDSVSSV-NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred hhhhhhh-hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 2222222 33344555 566 666776655 89999999 433 334433322211 1488999999553 344555
Q ss_pred CCCcEEEEeCCCc
Q 029743 143 HDSMLKLWDLDDI 155 (188)
Q Consensus 143 ~d~~i~iwd~~~~ 155 (188)
..++|+++++..-
T Consensus 265 dS~tIrlydi~~v 277 (783)
T KOG1008|consen 265 DSITIRLYDICVV 277 (783)
T ss_pred CcceEEEeccccc
Confidence 4589999998753
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.14 E-value=0.00071 Score=55.86 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=96.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC----c--------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY----F-------- 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~----~-------- 69 (188)
.|..+++.++.+..+|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+-.- .
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~ 153 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDE 153 (1265)
T ss_pred EEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccc
Confidence 35557778888888999999988776543 2223456899999999999999888877776543310 0
Q ss_pred ----------ccccceeeeccCC---------------------ceeEE-eecCCCEEEEe-----cCCCeEEEEecccC
Q 029743 70 ----------KDCSDRFVGLSPN---------------------SVDAL-LKLDEDRVITG-----SENGLISLVGILPN 112 (188)
Q Consensus 70 ----------~~~~~~~~~~~~~---------------------~v~~~-~~~~~~~l~~~-----~~d~~v~~~d~~~~ 112 (188)
++.-..+.+ ..+ .-..+ |--||+++++. .....|++||-. |
T Consensus 154 ~~sk~v~VGwGrkeTqfrg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 154 RKSKFVNVGWGRKETQFRG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred cccccceecccccceeeec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 111112221 110 11225 66789998873 333789999965 4
Q ss_pred eeeeecccCCCcceeEEEeeCCCCEEEEEe---CCCcEEEEeCCCccC
Q 029743 113 RIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSMLKLWDLDDILK 157 (188)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~ 157 (188)
..- .......+.=.+++|-|.|..+++.. .|+.|.+|.-+....
T Consensus 232 ~Ln-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 232 ALN-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred hhh-cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 322 22111122345799999999887654 566899998766543
No 332
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.14 E-value=0.0004 Score=41.89 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=68.7
Q ss_pred eEEEEEEe-C--C-CEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeee
Q 029743 40 LTSVVLMK-N--G-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 40 v~~~~~~~-~--~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
|+++++.. + | +.|++|+.|..|++|+-. ..+..+. ....+.++..-.+..++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~--e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEIT--ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEe--cccceEEEEEcCCCEEEEEecCCEEEEEeC--ccee
Confidence 66777665 3 2 689999999999999853 4555555 356777786545578999999999999984 2333
Q ss_pred eecccCCCcceeEEEeeC-CC---CEEEEEeCCCcEEE
Q 029743 116 QPIAEHSEYPIESLALSH-DR---KFLGSISHDSMLKL 149 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~d~~i~i 149 (188)
..++... .+.++++.. ++ +.|++|=.+|.|-+
T Consensus 75 WRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3444332 466666554 32 36778878887653
No 333
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0001 Score=55.63 Aligned_cols=143 Identities=14% Similarity=0.176 Sum_probs=95.8
Q ss_pred ccCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-------EEEEecCCCeEEEEEeCCccc-cccee
Q 029743 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKD-CSDRF 76 (188)
Q Consensus 6 ~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~~-~~~~~ 76 (188)
+.++|+ .+.....++-.|++.|+.+.....+.. |.-+.+.|+.+ .-+.|-.+..|.-||.+..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 334443 444557788899999999988886665 67777777643 224566678899999885433 22222
Q ss_pred eecc----CCceeEEeecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 77 VGLS----PNSVDALLKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 77 ~~~~----~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
++ | .....|.......++++|+.+|.|++||- .+. ....+++.. .+|..+..+.+|++|+..+ +..+.+-+
T Consensus 423 q~-kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG-~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 423 QS-KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLG-DAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ec-cccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccC-CceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 22 2 12233444455669999999999999996 443 334456664 4899999999999987554 66677666
Q ss_pred CC
Q 029743 152 LD 153 (188)
Q Consensus 152 ~~ 153 (188)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 54
No 334
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.08 E-value=1.4e-05 Score=37.90 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.8
Q ss_pred ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
++...+..|...+.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999995
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.08 E-value=1.6e-05 Score=37.71 Aligned_cols=38 Identities=39% Similarity=0.788 Sum_probs=31.8
Q ss_pred eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
++...+..|.. .|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44555666655 799999999999999999999999996
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.2e-05 Score=59.22 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=73.2
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee-EE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
...+.-+.|+|.-..+|++..+|.+.+..+. . +.+.++.- +...++ ++ |.|||+.+++|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4567889999999999999999999998886 2 44455554 555666 77 899999999999999999999999887
Q ss_pred eeecccCCCcceeEEEee
Q 029743 115 IQPIAEHSEYPIESLALS 132 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~ 132 (188)
+..........|.++.|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 766322222368888886
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.00028 Score=58.04 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=93.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC----C-------------------Cceeeeeccc---------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR----K-------------------NTVQTRSEFS--------------------- 36 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~----~-------------------~~~~~~~~~~--------------------- 36 (188)
++||||+++++..+..+++.+..-. . |+....+.+.
T Consensus 115 aswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~ 194 (1265)
T KOG1920|consen 115 ASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQ 194 (1265)
T ss_pred EeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhh
Confidence 4799999999999888887665421 1 1111112211
Q ss_pred ccceEEEEEEeCCCEEEEec----CC-CeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEec---CCCeEEEE
Q 029743 37 EEELTSVVLMKNGRKVVCGS----QS-GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLV 107 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~----~d-~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~ 107 (188)
.+.-+++.|.-||+++++.. .+ ..|++||-+ +..-.+-.. ....-.++ |-|.|..+++.. .++.|.+|
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~se~-~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNSTSEP-VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcccCc-ccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 11224589999999998832 23 789999965 222222222 33334556 788998888764 45678888
Q ss_pred eccc---CeeeeecccCCCcceeEEEeeCCCCEEEE---EeCCCcEEEEeCCCc
Q 029743 108 GILP---NRIIQPIAEHSEYPIESLALSHDRKFLGS---ISHDSMLKLWDLDDI 155 (188)
Q Consensus 108 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~iwd~~~~ 155 (188)
.-.. ++....+..... .|..++|+.++..|++ ......|++|-+.+.
T Consensus 272 ErNGL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 7432 222222333322 4899999999999987 444556999988774
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00088 Score=53.48 Aligned_cols=147 Identities=15% Similarity=0.161 Sum_probs=94.6
Q ss_pred CeEEEEeCCC-----cEEEEEcCCC------cee---eeec----ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-
Q 029743 8 MKLLGTSGDG-----TLSVCNLRKN------TVQ---TRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY- 68 (188)
Q Consensus 8 ~~l~~~~~d~-----~i~i~~~~~~------~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~- 68 (188)
++|++.+.|+ .|+||+++.- .++ +.+. ..+.++.+++.+.+-+.+++|-.+|.|..+.-+-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 5677777664 4899998631 222 1111 1356788999999989999999999999886432
Q ss_pred --cccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 69 --FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 69 --~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
.+........ .+.+|+.+ +..+++.++....-..|.+|.+....+... +..+ +..+.|..+++....++.++ +
T Consensus 158 RDrgsr~~~~~~-~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~-~ 234 (933)
T KOG2114|consen 158 RDRGSRQDYSHR-GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG-S 234 (933)
T ss_pred hccccceeeecc-CCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec-C
Confidence 1121122223 56789999 555666533333444688999884443444 5555 55888988887665455444 5
Q ss_pred CcEEEEeCCCccC
Q 029743 145 SMLKLWDLDDILK 157 (188)
Q Consensus 145 ~~i~iwd~~~~~~ 157 (188)
..+.+|+......
T Consensus 235 e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 235 EFLYFYDSDGRGP 247 (933)
T ss_pred ceEEEEcCCCcce
Confidence 5788888875543
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5.4e-05 Score=55.10 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=66.6
Q ss_pred cceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEE
Q 029743 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKL 149 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i 149 (188)
.+.+.. +...|+.+ |+|..+ ++..++.+.+|.|.|+++...+..+..+ . ++++++|.-|.. ++..|-..|.|.|
T Consensus 186 sq~lp~-~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~-~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPG-EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N-QIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccc-cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-C-CceeeeeccCCcceeEEeccCceEEE
Confidence 344555 77789999 788665 7888999999999999999999988888 4 799999998765 5566778899999
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
||++...
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998754
No 340
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.96 E-value=0.00014 Score=54.56 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=89.4
Q ss_pred CcEE-EEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCE
Q 029743 17 GTLS-VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDR 94 (188)
Q Consensus 17 ~~i~-i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ 94 (188)
..|. +|+..+......+....-++..+.|||.|.+|++.... .|.+|.-.... .+..+. ...+..+ |+|.++|
T Consensus 11 ~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-~l~~~~---~~~V~~~~fSP~~kY 85 (561)
T COG5354 11 AVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-KLVRFR---HPDVKYLDFSPNEKY 85 (561)
T ss_pred ceEEEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchh-heeeee---cCCceecccCcccce
Confidence 3443 34444443333444456678999999999999987765 48899876543 333333 3467777 8999999
Q ss_pred EEEecCCC---------------eEEEEecccCeeeeecccCCCcc--ee-EEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 95 VITGSENG---------------LISLVGILPNRIIQPIAEHSEYP--IE-SLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 95 l~~~~~d~---------------~v~~~d~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
|.+=+... .+.+||+.++..+..+..... + .+ -+.|+-+..+++-. ....++|+++
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 98765433 489999999999988876644 3 34 67888888776544 3456899996
No 341
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.95 E-value=0.00064 Score=53.58 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=78.7
Q ss_pred eeecccCeEEEEe------CCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC------------CeE
Q 029743 2 TFAADAMKLLGTS------GDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (188)
Q Consensus 2 ~~s~~~~~l~~~~------~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i 61 (188)
++||+|+.++... .|. .|.+++. .+.......+ ...+...|+|+|+.+++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 6789999987765 243 4445454 2222222222 247889999998877766432 233
Q ss_pred EEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEE---EecccCee-e---eecccCCCcceeEEEeeC
Q 029743 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL---VGILPNRI-I---QPIAEHSEYPIESLALSH 133 (188)
Q Consensus 62 ~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~---~d~~~~~~-~---~~~~~~~~~~v~~~~~~~ 133 (188)
.+.+++. +...+ . ....+..+ ++|||..++... ++.|++ -....|.. + ..+.......+.++.|..
T Consensus 433 ~~~~vd~-ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVDA-SAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEeccC-chhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 3334432 12211 2 34568888 899999988766 467776 33333431 1 112221122467899999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 029743 134 DRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd 151 (188)
++..+ ++..++...+|.
T Consensus 507 ~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred CCEEE-EEecCCCCceEE
Confidence 98855 444444333443
No 342
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=1.7e-05 Score=63.31 Aligned_cols=124 Identities=12% Similarity=0.118 Sum_probs=94.7
Q ss_pred eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCC--eEEE
Q 029743 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--LISL 106 (188)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~v~~ 106 (188)
.+.+..|....+|++|+...++|+.|+..|.|++|++.+ +.......+ |..+++-+ -+.+|..+++.+.-. ...+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc-cccccccccccCCcceeeeeccccCchHHH
Confidence 345667888899999999999999999999999999986 577777888 99999988 588888777665433 3668
Q ss_pred Eeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 107 VGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 107 ~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
|++.+ +.+...+.. -.++.|+...+.-+.|.......+||+++......
T Consensus 1172 W~~~s~~~~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred hccccccCccccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 99864 445555543 34678887655556666667889999998776554
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.93 E-value=0.00038 Score=51.55 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=46.4
Q ss_pred ecccCeEEEEeC---------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 4 AADAMKLLGTSG---------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 4 s~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
|||+++++.... .+.+.|+|+.+++....... ...+....|+|+|+.++... ++.|.+++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCC
Confidence 789999888532 46788999999876544443 67789999999999988775 46888888754
No 344
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.92 E-value=0.0013 Score=49.46 Aligned_cols=144 Identities=12% Similarity=0.032 Sum_probs=89.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeeccccc----------ce-EEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE----------EL-TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
.+..+++++.++.+.-+|.++|+.+........ .+ ..+.. .+..++.++.++.+.-+|..+ ++.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCcc
Confidence 456778888889999999999988776542210 00 01111 456777888899999999876 45544
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc----ceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY----PIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
.... . ..+.+. .- .+..++.+..++.|..+|.++|+.+..+...... ........ +..++.++.++.+..
T Consensus 145 ~~~~-~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a 219 (394)
T PRK11138 145 QTKV-A-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA 219 (394)
T ss_pred cccC-C-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence 4432 2 222211 11 3456777888899999999999988766532110 00111111 234666777888888
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
+|..++..
T Consensus 220 ~d~~~G~~ 227 (394)
T PRK11138 220 VLMEQGQL 227 (394)
T ss_pred EEccCChh
Confidence 88877654
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0053 Score=46.06 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=99.6
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~ 77 (188)
++++.++.++.. ..++.|.+.|............ ......++++|+++.+..+.. ++.+.+.|-.+. .......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 456777755444 4458899999777666655542 226789999999988877666 578888887653 3333332
Q ss_pred eccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeee-----ecccCCCcceeEEEeeCCCCEEEEEeCC---CcE
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 147 (188)
. ...+ ..+ +.|+|+.++... .++.|.+.|.+.....+ .+... . ....+.+.|++.++...... +.+
T Consensus 158 v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 158 V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEEEEeccCCCceE
Confidence 2 2334 445 799999766655 78899999977665543 12222 2 34678999999977655433 588
Q ss_pred EEEeCCCcc
Q 029743 148 KLWDLDDIL 156 (188)
Q Consensus 148 ~iwd~~~~~ 156 (188)
...|..+..
T Consensus 234 ~~id~~~~~ 242 (381)
T COG3391 234 LKIDTATGN 242 (381)
T ss_pred EEEeCCCce
Confidence 888887754
No 346
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.82 E-value=0.007 Score=45.86 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=83.5
Q ss_pred eeecccCeEEEE-eCCC----cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-----------CeEEEEE
Q 029743 2 TFAADAMKLLGT-SGDG----TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~----~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~~d 65 (188)
.+||+|+++|.+ +..| .++++|+++++.+..... ......+.|.++++.|+....+ ..|+.|.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 588999999876 3333 599999999976543211 1122349999998887665432 2477888
Q ss_pred eCCcccc-cceeeeccCCce--eEE-eecCCCEEEEecC---C-CeEEEEecccC----eeeeecccCCCcceeEEEeeC
Q 029743 66 WGYFKDC-SDRFVGLSPNSV--DAL-LKLDEDRVITGSE---N-GLISLVGILPN----RIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 66 ~~~~~~~-~~~~~~~~~~~v--~~~-~~~~~~~l~~~~~---d-~~v~~~d~~~~----~~~~~~~~~~~~~v~~~~~~~ 133 (188)
+.+.... ...+.. ..... ..+ .++++++++.... + ..+++.++..+ .....+.....+....+...
T Consensus 209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~- 286 (414)
T PF02897_consen 209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH- 286 (414)
T ss_dssp TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence 7654332 233444 33333 344 5899998775432 3 45888888764 22233332223123333333
Q ss_pred CCCEEEEEe---CCCcEEEEeCCCcc
Q 029743 134 DRKFLGSIS---HDSMLKLWDLDDIL 156 (188)
Q Consensus 134 ~~~~l~~~~---~d~~i~iwd~~~~~ 156 (188)
.+.+++... ..+.|...++.+..
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CCEEEEeeCCCCCCcEEEEecccccc
Confidence 444444333 23566666776654
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.81 E-value=0.0063 Score=44.51 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=85.5
Q ss_pred cCeEEEEeC----------CCcEEEEEcCCC----ceeeee--cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc
Q 029743 7 AMKLLGTSG----------DGTLSVCNLRKN----TVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 7 ~~~l~~~~~----------d~~i~i~~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 70 (188)
..+++.|+. .|.|.++++... ..+..+ ....++|++++-- +++ |+++. ++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 456776643 288999999873 222222 2456788988865 444 44433 4689999997643
Q ss_pred cccceeeeccCC--ceeEEeecCCCEEEEecCCCeEEEEeccc-Ceeeeeccc-CCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 71 DCSDRFVGLSPN--SVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAE-HSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 71 ~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
.+..... ... .+.++ ...+.++++|.....+.++..+. ...+..+.. .....+.++.|-++++.++.+..+|.
T Consensus 119 -~l~~~~~-~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 119 -TLLKKAF-YDSPFYITSL-SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp -SEEEEEE-E-BSSSEEEE-EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred -cchhhhe-ecceEEEEEE-eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 1222222 223 33333 44466999999888888875543 232322221 11226888888866678889999999
Q ss_pred EEEEeCCC
Q 029743 147 LKLWDLDD 154 (188)
Q Consensus 147 i~iwd~~~ 154 (188)
+.++....
T Consensus 196 l~~l~~~~ 203 (321)
T PF03178_consen 196 LFVLRYNP 203 (321)
T ss_dssp EEEEEE-S
T ss_pred EEEEEECC
Confidence 99998864
No 348
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.81 E-value=0.0054 Score=43.69 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=87.9
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc--------
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------- 74 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------- 74 (188)
....++.|+.|+.+| +++++.........+. +...|..+...|+-+.+++-+ |+.+.++++..-.....
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 344678999998888 9999984332222222 233499999998777766654 48999999864221110
Q ss_pred ------eeeeccCCceeEEe---ecCCCEEEEecCCCeEEEEecccC-----eeeeecccCCCcceeEEEeeCCCCEEEE
Q 029743 75 ------RFVGLSPNSVDALL---KLDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 75 ------~~~~~~~~~v~~~~---~~~~~~l~~~~~d~~v~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.+. ....+.... ...+...++......|.+|..... ...+.+.-. + .+..++|. ++.++.
T Consensus 80 ~~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~-~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 80 SRSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-D-PPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccc--ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-C-CcEEEEEe--CCEEEE
Confidence 111 111122222 234444444444458888877542 455566555 4 68899998 456666
Q ss_pred EeCCCcEEEEeCCCccCCC
Q 029743 141 ISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~~ 159 (188)
+. .....+.|+.+.....
T Consensus 154 ~~-~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 154 GT-SKGFYLIDLNTGSPSE 171 (275)
T ss_pred Ee-CCceEEEecCCCCceE
Confidence 65 4457888888665443
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=5.2e-05 Score=60.30 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=81.6
Q ss_pred eeecccCeEEEEeC----CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
.|+|..-+++.++- .|.|-||- .+|++.+... .+-.+++++|+|..-.|+.+=.-|.+.+|.... .+.-....
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv~~ 98 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTVVE 98 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeeeecc
Confidence 58898888888863 57888875 5566544433 334567899999888888888889999999865 33333444
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~ 110 (188)
. |+.++..+ ||++|..++++..-|.|.+|...
T Consensus 99 t-h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 T-HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred C-CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5 89999999 99999999999999999999865
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.75 E-value=8.6e-06 Score=62.44 Aligned_cols=139 Identities=12% Similarity=0.205 Sum_probs=93.4
Q ss_pred CeEEEEeCCCcEEEEEcCCCce--eeeecccccceEEEEEEe-CCCEEEEecC----CCeEEEEEeCCc----cccccee
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQ----SGTVLLYSWGYF----KDCSDRF 76 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~~~d~~~~----~~~~~~~ 76 (188)
-.++.|..+|.|.+-.++...- ....+++..+.++++|++ |.++|++|-. |..+.|||+... .+.....
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 4577888889999988765322 234567888999999998 5677777643 457999999642 1111111
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEe
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 151 (188)
.+ ......++ +-.+.+++.+|.....+.++|++. ......+.. . .+..+...| ...++++-. |+.|.+||
T Consensus 151 ~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cc-cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hcccceecCCCCCceeccc-cCceeecc
Confidence 11 22223345 467888899999999999999983 223333332 2 466777888 677877665 99999999
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.0081 Score=43.59 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=83.0
Q ss_pred eecccCeEEEEeC-----------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCC-c
Q 029743 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGY-F 69 (188)
Q Consensus 3 ~s~~~~~l~~~~~-----------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~-~ 69 (188)
..|+|.+.++... -|.|+.++. .+..++.+..+-...+.|+||||++.++.+... +.|+-|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566666554433 133444443 466666666666677899999999888776654 7788887752 1
Q ss_pred cccc-----ceeeeccCCceeEE-eecCCCEEEEecCCC-eEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEE
Q 029743 70 KDCS-----DRFVGLSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSI 141 (188)
Q Consensus 70 ~~~~-----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 141 (188)
+... ..+.. ..+..-.+ ...+|.+.+++...| .|..|+.+ ++.+..+..+.. .+++++|-- +.+.|...
T Consensus 197 g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 197 GPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEE
Confidence 1111 11111 12333333 466777776555544 89999988 888888877744 688888864 44555444
Q ss_pred e
Q 029743 142 S 142 (188)
Q Consensus 142 ~ 142 (188)
+
T Consensus 274 s 274 (307)
T COG3386 274 S 274 (307)
T ss_pred e
Confidence 3
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.68 E-value=0.0035 Score=37.88 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=61.4
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 87 (188)
+.|++|+.|..|++|+- .+.+..+. ..+.|++++-... ..++.+..+|+|-+|+-. ..+...+. +..+.++
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~---~RlWRiKS--K~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS---QRLWRIKS--KNQVTSM 86 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc---ceeeeecc--CCCeEEE
Confidence 56999999999999983 35556665 3567888876654 678999999999999853 22333333 3346666
Q ss_pred --eec--CCC-EEEEecCCCeEE
Q 029743 88 --LKL--DED-RVITGSENGLIS 105 (188)
Q Consensus 88 --~~~--~~~-~l~~~~~d~~v~ 105 (188)
+.. +|. -|++|-.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 333 332 588888888774
No 353
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.64 E-value=0.0027 Score=50.15 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=61.6
Q ss_pred cceEEEEEEeCCCEEEEec------CCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCC---------
Q 029743 38 EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------- 101 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------- 101 (188)
..+.+++++|+|+.++... .|..-.||-....+.. +.+.. .. ....- |+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887654 2443344443322333 33332 22 24444 89998877766432
Q ss_pred ---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 102 ---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 102 ---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
+.+.+.+++.+.... ...+ .|..+.|+|||..++... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g-~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPG-PISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCC-CcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333444333322 1223 699999999999987665 467776
No 354
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00063 Score=50.52 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=102.3
Q ss_pred ccCeEEEEeCCCcEEEEEcCC--C-ceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccccceeee-cc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK--N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG-LS 80 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~ 80 (188)
..+++.+++.||.++.|--.. + +.+..+..|-..+.+++.+-++..+.+.+. |..++++|+.+. .....++- .-
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-chhhhcccccC
Confidence 457889999999999997543 2 344556678889999999999999999777 999999999752 33322221 02
Q ss_pred CCceeEEeecCC-C-EEEE-ecCCCeEEEEecccCe-eeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDALLKLDE-D-RVIT-GSENGLISLVGILPNR-IIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~~~~~~-~-~l~~-~~~d~~v~~~d~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+.+..+.++.. . .+++ .-.++.+.++|-.... +...+ .-|.. +|..+.+.+.+..+++....|.|.-|....
T Consensus 98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-PVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-ceEEEEeeccccceeeccccceeEeecCCC
Confidence 223333333321 1 2333 3367889999976544 22222 33544 899999999999999998899999999884
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.58 E-value=0.019 Score=43.84 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=73.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc--------c--ccccee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------K--DCSDRF 76 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------~--~~~~~~ 76 (188)
|.+|+..+. +.|.+||+++++.++.+... +|..+.|++++++++..+.+ .+.+++.+.. + .....+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 666666655 47999999999999888743 48999999999999988766 6778776531 0 022333
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.. -...|.+. |..+ .++-.+.. .++. +-.|..- .+..-.. +++-+.+.+..+.+.....|+.|..+.+..
T Consensus 193 ~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 193 HE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 22 24455555 5444 44333333 5544 3344421 2221112 677788888777888888888888887764
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.0064 Score=42.45 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=52.5
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|++++.|...+.+++.+.++|.....+.....--......+++..+..++.|++.+..|.+. ..++-..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecc
Confidence 67789999999999999999987777664322222344567899999999999999999876 34444333
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.54 E-value=0.014 Score=41.03 Aligned_cols=151 Identities=12% Similarity=0.142 Sum_probs=86.5
Q ss_pred CeeecccCe-EEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc-----
Q 029743 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----- 73 (188)
Q Consensus 1 l~~s~~~~~-l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----- 73 (188)
|+|+|+.+. +++....+.|..++. .|+.++.++-. .+-...|++..++.++++.-.++.+.++++......+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 478997665 555566788888886 47777766522 3568899998888888877778999999985422221
Q ss_pred ceee-----eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc---Ceeee-----ecc---cCCCcceeEEEeeCCCC
Q 029743 74 DRFV-----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQ-----PIA---EHSEYPIESLALSHDRK 136 (188)
Q Consensus 74 ~~~~-----~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~---~~~~~-----~~~---~~~~~~v~~~~~~~~~~ 136 (188)
+.+. . +....-.+ +.|.++.|+++.......+|.++. ...+. .+. .. -..+++++++|...
T Consensus 106 ~~~~l~~~~~-~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~ 183 (248)
T PF06977_consen 106 QKISLGFPNK-GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLSGLSYDPRTG 183 (248)
T ss_dssp EEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---EEEEETTTT
T ss_pred eEEecccccC-CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-eccccceEEcCCCC
Confidence 1111 1 23446778 789888888888777777777654 11111 011 11 12578899999654
Q ss_pred -EEEEEeCCCcEEEEeCCC
Q 029743 137 -FLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 137 -~l~~~~~d~~i~iwd~~~ 154 (188)
+++.......|..+|...
T Consensus 184 ~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 184 HLLILSDESRLLLELDRQG 202 (248)
T ss_dssp EEEEEETTTTEEEEE-TT-
T ss_pred eEEEEECCCCeEEEECCCC
Confidence 455555667777777443
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00051 Score=56.06 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcce
Q 029743 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI 126 (188)
Q Consensus 48 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v 126 (188)
.+..++.|+..|.+...|+...-.....-.. ...+|+++ |+.+|..++.|-.+|.|.+||+..++.++.+..+.. +.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-p~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA-PV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC-cc
Confidence 4557888999999999988642111122222 46789999 799999999999999999999999988887765532 44
Q ss_pred eEEE---eeCCCCEEEEEeCCCcEEEEeC
Q 029743 127 ESLA---LSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 127 ~~~~---~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.++- +..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4443 3345556777766665 5544
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.53 E-value=0.0091 Score=44.26 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=72.6
Q ss_pred eeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+|.++|+.|+.++. ...+++.|+.+++..+.-.+.........++|+++.++.......++-.|+.+. +....+.-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~-e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL-EERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC-cEEEEEEC
Confidence 57889988777655 457788899988876554443333446677888888876656668888888763 33333333
Q ss_pred ccCCceeEE-e--ecCCCEEEEec----------------------CCCeEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 79 LSPNSVDAL-L--KLDEDRVITGS----------------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 79 ~~~~~v~~~-~--~~~~~~l~~~~----------------------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
....+... + +.++.+++-.- ....|.-.|+++|+....+... . .+..+.|+|
T Consensus 121 -p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~-wlgH~~fsP 197 (386)
T PF14583_consen 121 -PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-D-WLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S--EEEEEEET
T ss_pred -CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-c-cccCcccCC
Confidence 33333222 3 45666654221 1123556677777766555544 3 688899999
Q ss_pred CCCEEEEEe
Q 029743 134 DRKFLGSIS 142 (188)
Q Consensus 134 ~~~~l~~~~ 142 (188)
....+++=+
T Consensus 198 ~dp~li~fC 206 (386)
T PF14583_consen 198 TDPTLIMFC 206 (386)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEe
Confidence 666555443
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00059 Score=55.74 Aligned_cols=96 Identities=14% Similarity=0.239 Sum_probs=70.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce-eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
+..++.|+..|.+-..|....-. ...-..-.++|++++|+.+|+.+..|-.+|.|.+||+.. +..++.+.. +..+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e-~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE-HGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee-cCCccc
Confidence 34567777778877777654311 111123467899999999999999999999999999986 577888887 877777
Q ss_pred EE-e---ecCCCEEEEecCCCeE
Q 029743 86 AL-L---KLDEDRVITGSENGLI 104 (188)
Q Consensus 86 ~~-~---~~~~~~l~~~~~d~~v 104 (188)
.+ + ..++..++++...|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCce
Confidence 77 3 3455578888777763
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.46 E-value=0.023 Score=41.59 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=78.6
Q ss_pred cCeEEEEeCCCcEEEEEcCCCc-eeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-ccCCc
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~ 83 (188)
+.+|+++. .+.|++|++...+ ...... .....+.++.. .+++++.|.....+.++.++.....+..+.. .....
T Consensus 98 ~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 33455444 4899999998776 433322 12224455544 4679999998888888877543333333322 02334
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEeccc-------C--eeeeecccCCCcceeEE---EeeCC--C------CEEEEEe
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILP-------N--RIIQPIAEHSEYPIESL---ALSHD--R------KFLGSIS 142 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-------~--~~~~~~~~~~~~~v~~~---~~~~~--~------~~l~~~~ 142 (188)
++++ +-++++.++.+..+|.+.++.... + ........|-+..|+++ .+.|. + ..++.++
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 5566 554667999999999999988752 1 11111222223367777 55552 2 2377788
Q ss_pred CCCcEEEE
Q 029743 143 HDSMLKLW 150 (188)
Q Consensus 143 ~d~~i~iw 150 (188)
.+|.|.+.
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 89888743
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.016 Score=41.05 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred eeecccCeEEEEeC-----CCcEEEEEcCCC-ceeeeecccccceEEEEEEeCCCEEEEecCC-----------------
Q 029743 2 TFAADAMKLLGTSG-----DGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------- 58 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-----d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------- 58 (188)
.|||||.+|+..-. -|.|-|||...+ +.+..+..|.-....+.|.+||+.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 58999999988744 378899998854 4556777888888999999999999886431
Q ss_pred -CeEEEEEeCCcccccceeee---ccCCceeEE-eecCCCEEEEecCCCe-----EEEEecccCeeeeecccCCC-----
Q 029743 59 -GTVLLYSWGYFKDCSDRFVG---LSPNSVDAL-LKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSE----- 123 (188)
Q Consensus 59 -~~i~~~d~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~d~~-----v~~~d~~~~~~~~~~~~~~~----- 123 (188)
-++.+.|..+ ++.+.+..- .+.-.++.+ ..++|+.++.+...|. -.+=-...++++.-+....+
T Consensus 200 ePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~ 278 (366)
T COG3490 200 EPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF 278 (366)
T ss_pred CccEEEEeccc-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence 1222333222 222221110 012234444 3556665554433221 11111223444433332211
Q ss_pred -cceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCccCCCCCC
Q 029743 124 -YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 124 -~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~ 162 (188)
.-|-+++.+.+...++..+ ..+..-+||..++.......
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 1366778876666665444 55678899999987654433
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.42 E-value=0.011 Score=44.49 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=71.7
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc------------------------------------------cccee
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------------------------------------------CSDRF 76 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------------------------------------------~~~~~ 76 (188)
.|+.+.|++...-|+++...|.|.+|.....+. +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 467777888777788888888877776532100 00011
Q ss_pred eeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeee--ccc-----CCCcceeEEEeeC-----CC---CEEEEE
Q 029743 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP--IAE-----HSEYPIESLALSH-----DR---KFLGSI 141 (188)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~--~~~-----~~~~~v~~~~~~~-----~~---~~l~~~ 141 (188)
.. ..++|+++...+=.+++.|..+|.+.|.|+|....+.. +.. .....|+++.|.. |+ -.|++|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 22 45678888656777999999999999999987765544 111 1223577888862 33 357788
Q ss_pred eCCCcEEEEeCC
Q 029743 142 SHDSMLKLWDLD 153 (188)
Q Consensus 142 ~~d~~i~iwd~~ 153 (188)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999885
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.42 E-value=0.02 Score=40.18 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=76.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCc------eeeeec-----ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNT------VQTRSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-- 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-- 68 (188)
++..++.++++--+++.+.++.+.... ....+. .+...+..++|.|.++.|+.+-...-..+|.++.
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 344456566655557889888884311 111111 2445689999999888888887776677777753
Q ss_pred ccccccee-----e--eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCC--------CcceeEEEe
Q 029743 69 FKDCSDRF-----V--GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHS--------EYPIESLAL 131 (188)
Q Consensus 69 ~~~~~~~~-----~--~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--------~~~v~~~~~ 131 (188)
....+... . ......+.++ ++| .+.+++....+..|..+| ..|+.+..+.-.. -.+.-.|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111111 0 0022335566 677 456777777888899999 5566554432111 025778999
Q ss_pred eCCCCEEEEEeCCCcEEEE
Q 029743 132 SHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iw 150 (188)
.++|+..++ +.-+.+++|
T Consensus 230 d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -TT--EEEE-ETTTEEEEE
T ss_pred CCCCCEEEE-cCCceEEEe
Confidence 999965554 456666655
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.035 Score=42.15 Aligned_cols=63 Identities=10% Similarity=0.165 Sum_probs=41.1
Q ss_pred eeecccCeEEEEeCC----------C-cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe
Q 029743 2 TFAADAMKLLGTSGD----------G-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d----------~-~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 66 (188)
+.+|.|..+|..-.+ . .|+||+.. |+++..+.-..+.+.++.|+.+ ..|++-..||.+++||+
T Consensus 35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 345556566655333 1 47888844 5566665544478999999874 45556667888888887
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.028 Score=40.04 Aligned_cols=154 Identities=10% Similarity=0.124 Sum_probs=98.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc-cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR---- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---- 75 (188)
+.|+|+.+.|++......-.|+--..|+.++.++- .-.....+++..++++.++--.++.+.++.+......+..
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 57999999999988888877777778888887761 1234567888888888888888888888888643221111
Q ss_pred -----eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee---eeecccCCC------cceeEEEeeCCC-CEEE
Q 029743 76 -----FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSE------YPIESLALSHDR-KFLG 139 (188)
Q Consensus 76 -----~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~~~~~~~------~~v~~~~~~~~~-~~l~ 139 (188)
... .......+ +.|....|+.+-..+-+.||....... ......+.. ..|+++.|++.. ..|+
T Consensus 171 i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 171 IPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 111 12334556 688888888888888888877653221 111111110 147778888744 4455
Q ss_pred EEeCCCcEEEEeCCCc
Q 029743 140 SISHDSMLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (188)
-+.+++.+.-.|....
T Consensus 250 LS~ESr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDESRRLLEVDLSGE 265 (316)
T ss_pred EecCCceEEEEecCCC
Confidence 5556666666665543
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.33 E-value=0.021 Score=44.43 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=87.3
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeeccccc------ceE--EEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+..++.++.++.|+-+|.++|+.+........ .+. .+... ++..++.++.++.|.-+|.++ ++.+-....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 45677778889999999999988776653221 010 11111 226788888899999999987 454444432
Q ss_pred ccCC--ceeEE-eec--CCCEEEEec---------CCCeEEEEecccCeeeeecccCCC-------------------cc
Q 029743 79 LSPN--SVDAL-LKL--DEDRVITGS---------ENGLISLVGILPNRIIQPIAEHSE-------------------YP 125 (188)
Q Consensus 79 ~~~~--~v~~~-~~~--~~~~l~~~~---------~d~~v~~~d~~~~~~~~~~~~~~~-------------------~~ 125 (188)
... .-..+ .+| .+..++.++ .++.|..+|..+|+.+..+..... ..
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 211 00111 122 234455553 357888999999987766543211 01
Q ss_pred e-eEEEeeCCCCEEEEEeCCC------------------cEEEEeCCCccCC
Q 029743 126 I-ESLALSHDRKFLGSISHDS------------------MLKLWDLDDILKG 158 (188)
Q Consensus 126 v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~ 158 (188)
+ ...++.+.+..++.++.++ .|.-+|+++++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1244555556677676554 6888888877643
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.28 E-value=0.0011 Score=33.63 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.4
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
...|..++|+|....|+.+..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 369
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.21 E-value=0.049 Score=40.72 Aligned_cols=138 Identities=7% Similarity=-0.030 Sum_probs=71.2
Q ss_pred CeeecccCeEEEEe-----------CCC-cEEEEEcCC--Cce--eeeecccccceEEEEEEeCCCEEEEecCCCeEEEE
Q 029743 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (188)
Q Consensus 1 l~~s~~~~~l~~~~-----------~d~-~i~i~~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 64 (188)
|+|.++|+++++-. ..+ .|.+++-.+ |.. ...+-..-.....+++.+++ . ++++.....++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCeEEEEe
Confidence 57888998777643 123 677776442 322 22333223456889999888 4 444444333333
Q ss_pred EeCCccc---ccc-eeeec--c----CCceeEE-eecCCCEEEEecC-------------------CCeEEEEecccCee
Q 029743 65 SWGYFKD---CSD-RFVGL--S----PNSVDAL-LKLDEDRVITGSE-------------------NGLISLVGILPNRI 114 (188)
Q Consensus 65 d~~~~~~---~~~-~~~~~--~----~~~v~~~-~~~~~~~l~~~~~-------------------d~~v~~~d~~~~~~ 114 (188)
|.+..+. ... .+.+. . ......+ +.|+|.+.++-+. .+.|.-++...++.
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~ 176 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL 176 (367)
T ss_pred CCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE
Confidence 4432110 111 11210 1 1224455 6899886554441 13455556554443
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
...-.+. . ....++|+++|+++++-.
T Consensus 177 e~~a~G~-r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 177 RVVAHGF-Q-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEecCc-C-CCccceECCCCCEEEEcc
Confidence 2222233 2 467899999998876544
No 370
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.21 E-value=0.0018 Score=32.85 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=27.4
Q ss_pred ceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 125 PIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 125 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.|..++|+|....||.+..+|.|.+|.++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 69999999999999999999999999984
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.03 E-value=0.074 Score=38.94 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=39.2
Q ss_pred EEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEE-eCCCcEEEEeCCCccCCCCC
Q 029743 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSI-SHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~d~~i~iwd~~~~~~~~~~ 161 (188)
|.++|+.+++.+..+... . ++.+|..+.+.+ .|++. ..++.|.+||..+++.....
T Consensus 271 VWv~D~~t~krv~Ri~l~-~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPLE-H-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEETTTTEEEEEEEEE-E-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEECCCCeEEEEEeCC-C-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 667777777777777643 2 678899998765 66554 45789999999998765433
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.073 Score=38.75 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=80.7
Q ss_pred eecccCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee----
Q 029743 3 FAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV---- 77 (188)
Q Consensus 3 ~s~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---- 77 (188)
|.++.+.|+ +--..+.|+-|+..+++. ..+. +...+.++.....+..|+++.. .+.+++.+.. .....+.
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~-~~~t~~~~~~~ 106 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTG-GKITLLAEPED 106 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCC-ceeEEeccccC
Confidence 556666444 334467888888776643 2333 3344555555555556666543 3556666432 2212221
Q ss_pred eccCCceeEE-eecCCCEEEEecC-----------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-C
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-D 144 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-----------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 144 (188)
+........+ ..|+|.+.+.... -|.|+.++. .+..++.+..+-. .-+.|+|+||++.|+.+.. .
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEEeCCC
Confidence 1011223334 5788887765444 133444443 4555555555323 4678999999988876654 4
Q ss_pred CcEEEEeCCC
Q 029743 145 SMLKLWDLDD 154 (188)
Q Consensus 145 ~~i~iwd~~~ 154 (188)
+.|.-|++..
T Consensus 185 ~~i~r~~~d~ 194 (307)
T COG3386 185 NRIHRYDLDP 194 (307)
T ss_pred CeEEEEecCc
Confidence 8888888874
No 373
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.039 Score=42.37 Aligned_cols=143 Identities=11% Similarity=0.101 Sum_probs=90.1
Q ss_pred ccCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-------EEEEecCCCeEEEEEeCCcccccceee
Q 029743 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 6 ~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+..+|+ .|+....++-.|++.|+.+....-|... -+.|.|+.+ .-++|-.+..|.-.|.+..+..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 3444567888888889888887766554 556666432 223444555666667665554444333
Q ss_pred eccCCcee-----EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNSVD-----ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~v~-----~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
. ...++ +.......++++++..|.|++||--.-+....+.+..+ .|..+..+.+|++++..+ ...+.+-|+
T Consensus 556 s--KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 556 S--KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred e--hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee-cceEEEEec
Confidence 2 22222 22234567999999999999999543333444555544 799999999999887655 456777776
Q ss_pred CC
Q 029743 153 DD 154 (188)
Q Consensus 153 ~~ 154 (188)
+-
T Consensus 632 ~i 633 (776)
T COG5167 632 PI 633 (776)
T ss_pred cc
Confidence 54
No 374
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0044 Score=51.30 Aligned_cols=137 Identities=15% Similarity=0.019 Sum_probs=86.0
Q ss_pred eecccCeEEEEe--CCCcEEEEEcCCCce-----eeee------cccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCC
Q 029743 3 FAADAMKLLGTS--GDGTLSVCNLRKNTV-----QTRS------EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 3 ~s~~~~~l~~~~--~d~~i~i~~~~~~~~-----~~~~------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~ 68 (188)
.++|+...++.. .+..|..||++.-.. ...+ ........++.|+|.- ...+.+..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 345655544443 334778899864211 1111 1223346678898853 4456777888898888764
Q ss_pred cccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC---CCcceeEEEeeCCCCEEEEEe
Q 029743 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 142 (188)
....+..+. -....+++ |+|.|+.++.|-..|++..|-.. .+....+... ..+.|.+++|-....+|++-+
T Consensus 188 ~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 188 LAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 333333333 34567788 89999999999999999988754 3333333221 125799999998887776443
No 375
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.01 E-value=0.057 Score=37.34 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=60.2
Q ss_pred ceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcc-c-----ccceeee---c-cCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 39 ELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFK-D-----CSDRFVG---L-SPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~-~-----~~~~~~~---~-~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
--..++|+.+.+.+. +-+.+-+|.-||.+... . .+-.++. . +.. .-.+ ...+|.+.++.-+.++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCCcEEEEEecCcEEEE
Confidence 346788988776665 45556678778853211 1 1111111 0 111 1112 3457788888888899999
Q ss_pred EecccCeeeeecccCCCcceeEEEeeC
Q 029743 107 VGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
.|+.+|+.+.++.-+.. +|++++|--
T Consensus 238 ~dp~tGK~L~eiklPt~-qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTP-QITSCCFGG 263 (310)
T ss_pred ECCCCCcEEEEEEcCCC-ceEEEEecC
Confidence 99999999998887766 899999963
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.99 E-value=0.015 Score=47.34 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=66.3
Q ss_pred eEEEEeCCCcEEEEEcCCC-c-eee-eec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 9 KLLGTSGDGTLSVCNLRKN-T-VQT-RSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~-~-~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
..+.|-.++.+..||.+-. . ++. ... .......|++-+.+ -+||+|+.+|.|++||- .+.+....+.+ -+.+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCC-CCCC
Confidence 4566777889999998753 2 221 111 12334666665554 47899999999999994 33455555666 7889
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEec
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
|..+ .+.||+++++.+... +.|++.
T Consensus 621 I~~iDvt~DGkwilaTc~ty-LlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCKTY-LLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeecce-EEEEEE
Confidence 9999 799999988777654 556664
No 377
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.99 E-value=0.068 Score=37.81 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=80.3
Q ss_pred eeecccCeEEEEe---CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe-CCcccccceee
Q 029743 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW-GYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~ 77 (188)
++|++++.++... ....++++.. +.....+. ....+....|++++...+....+...+++.. .........+.
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 6789998887765 2334555443 32222221 2237888899999877776666666666632 22111111122
Q ss_pred ec-cCCceeEE-eecCCCEEEEec---CCCeEEEEecc---cC------eeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 78 GL-SPNSVDAL-LKLDEDRVITGS---ENGLISLVGIL---PN------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 78 ~~-~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~---~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
.. ....|..+ ++|||..++... .++.|.+--+. .+ .+......... .+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-DVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-cceeeeecCCCEEEEEeCC
Confidence 10 11278888 899999887665 34677776543 23 11222222223 6899999999987766654
Q ss_pred C
Q 029743 144 D 144 (188)
Q Consensus 144 d 144 (188)
.
T Consensus 186 ~ 186 (253)
T PF10647_consen 186 A 186 (253)
T ss_pred C
Confidence 3
No 378
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.99 E-value=0.028 Score=43.72 Aligned_cols=117 Identities=8% Similarity=-0.013 Sum_probs=70.7
Q ss_pred cccceEEEEEEeCC----CEEEEecCCCeEEEEEeCCcc----cccceeeeccC-----CceeEEeecCCCEEEEecCCC
Q 029743 36 SEEELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFK----DCSDRFVGLSP-----NSVDALLKLDEDRVITGSENG 102 (188)
Q Consensus 36 ~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~~d~ 102 (188)
.-..|..+.|.|-+ ..+.+.-....|.+|.+.... +.+........ -+-.|+|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 34568999999843 244444556689999985211 11111111011 234567999988887766555
Q ss_pred eEEEEecccCe--eeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCC
Q 029743 103 LISLVGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 103 ~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (188)
.-.+++++... ....+.+. + .|.|.+|.+||+.|+.+- ..=.-++||-..
T Consensus 135 vSV~~sV~~d~srVkaDi~~~-G-~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTS-G-LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEeccCC-c-eEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 44467776433 33334443 4 799999999999887554 333567777443
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.98 E-value=0.054 Score=42.16 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=64.3
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe------------------cCCCeEEEEEeCCcc
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG------------------SQSGTVLLYSWGYFK 70 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~~~d~~~~~ 70 (188)
.++.++.+|.++.+|.++|+.+...... ...+..+| ..++.+ ..++.+.-.|+.++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG- 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG- 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-
Confidence 5777888999999999999988765421 01122233 222221 23466777777653
Q ss_pred cccceeeeccC--------Cce-eEEeecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 71 DCSDRFVGLSP--------NSV-DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 71 ~~~~~~~~~~~--------~~v-~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
+.+-.... .. .+. .......+..+++++.+|.|+.+|.++|+.+..++..
T Consensus 377 ~~~W~~~~-~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 377 KVVWEKRE-GTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred cEeeEeeC-CccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 33332221 10 111 1111235678889999999999999999988776654
No 380
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.93 E-value=0.082 Score=42.11 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=70.4
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc-cceeeeccCCceeEE-e--ecCCCEEEEecCCCeEEEEecc----
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGIL---- 110 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~---- 110 (188)
.+.-+.-+.-++..++-+....+.|||.+...-. ...+ . ....|..+ | .|+|+.+++.+-.+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444444555555556556678999999753211 1112 2 46788888 6 6899999988888889888631
Q ss_pred -----cCeeeeec--ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 111 -----PNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 111 -----~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+..+++.+ ..+...+|.+..|.++|..++.+ ++.+.|++-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 11223322 33333379999999999666533 5678888754
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.087 Score=37.55 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=82.6
Q ss_pred Ceeeccc-CeEEEEeCCCc-EEEEEcCCCceeeeecccccc--eEEEEEEeCCCEEEEecCC-----CeEEEEEeCCccc
Q 029743 1 MTFAADA-MKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~ 71 (188)
|+|+|-. +-++.+-.-|+ ..++|....+.+.++.....+ .-.=.|+|+|++|+..-.| |.|=+||.+..-+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 3455532 33444444443 356777766554444321111 1233589999999876544 6899999986545
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCC-------C-----------eEEEEecccCeeeeecc----cCCCcceeE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-------G-----------LISLVGILPNRIIQPIA----EHSEYPIES 128 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-------~-----------~v~~~d~~~~~~~~~~~----~~~~~~v~~ 128 (188)
.+..+.. |.-....+ +.+||+.++.+... | .+.+.|..+|+.+.+.. .+.- .|..
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l-SiRH 230 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL-SIRH 230 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc-ceee
Confidence 5566666 76666777 79999988876531 1 23445545555443322 1112 5778
Q ss_pred EEeeCCCCEEEEEe
Q 029743 129 LALSHDRKFLGSIS 142 (188)
Q Consensus 129 ~~~~~~~~~l~~~~ 142 (188)
++..+||+.++.+-
T Consensus 231 ld~g~dgtvwfgcQ 244 (366)
T COG3490 231 LDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeCCCCcEEEEEE
Confidence 88888887666543
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.0059 Score=41.64 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=57.2
Q ss_pred cCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEE-EEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC-Cc
Q 029743 7 AMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVV-LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~ 83 (188)
+..+++|+.+|.|++|+... +........-...+.++. -..++.+..++..++.|+.|++.. ...+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc-ccCCC
Confidence 45688899999999998763 222112221222232222 222445788999999999999864 333333333 44 33
Q ss_pred eeEE-eecCCCEEEEe--cCCCeEEEEecc
Q 029743 84 VDAL-LKLDEDRVITG--SENGLISLVGIL 110 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~--~~d~~v~~~d~~ 110 (188)
...+ ....++.+... +.+..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 3333 24444555555 555566666654
No 383
>PHA02713 hypothetical protein; Provisional
Probab=96.86 E-value=0.056 Score=42.80 Aligned_cols=144 Identities=8% Similarity=0.062 Sum_probs=73.2
Q ss_pred ccCeEEEEeCCC-----cEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecCCC-------------------
Q 029743 6 DAMKLLGTSGDG-----TLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (188)
Q Consensus 6 ~~~~l~~~~~d~-----~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------- 59 (188)
+++..+.|+.++ .+..||..+.+= +..++........+ .-+++..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 566667777643 477888776532 11222111111122 23677777777542
Q ss_pred ----eEEEEEeCCcccccceeeec-cCCceeEEeecCCCEEEEecCC------CeEEEEeccc-Ce--eeeecccCCCcc
Q 029743 60 ----TVLLYSWGYFKDCSDRFVGL-SPNSVDALLKLDEDRVITGSEN------GLISLVGILP-NR--IIQPIAEHSEYP 125 (188)
Q Consensus 60 ----~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d------~~v~~~d~~~-~~--~~~~~~~~~~~~ 125 (188)
.+..||..+. ....+..- ....-.++..-+++..+.|+.+ ..+..||..+ .+ .+..+..... .
T Consensus 429 ~~~~~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-A 505 (557)
T ss_pred cccceEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-c
Confidence 4666776542 11111110 0001112234456666677643 2467899886 33 3344433321 1
Q ss_pred eeEEEeeCCCCEEEEEeCCC--cEEEEeCCCcc
Q 029743 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (188)
...+++ +++..++|+.++ .+..||..+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222222 677888888887 67778877655
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.84 E-value=0.065 Score=40.49 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=59.5
Q ss_pred CCcEEEEEcCCCceeeeeccc--ccceEEEEEEeCC--CE-EEEecCCCeEEEEEeCCcc----ccccee----------
Q 029743 16 DGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNG--RK-VVCGSQSGTVLLYSWGYFK----DCSDRF---------- 76 (188)
Q Consensus 16 d~~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~--~~-l~~~~~d~~i~~~d~~~~~----~~~~~~---------- 76 (188)
..++++||+.+.+.++++.-- ...+..+.|..+. .+ ++.+.-..+|..|--...+ +.+-.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999999998888622 2346677776543 33 3333334455554331111 011111
Q ss_pred -------eeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccC---eeeeecccC--------C-------CcceeEE
Q 029743 77 -------VGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN---RIIQPIAEH--------S-------EYPIESL 129 (188)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~---~~~~~~~~~--------~-------~~~v~~~ 129 (188)
.. -..-++.+ .|.|.++|+..+ ..|.|+.||+... +.+.++.-. . .+...-+
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 11 12346677 689999988776 6899999999642 222221100 0 0124667
Q ss_pred EeeCCCCEEEEEe
Q 029743 130 ALSHDRKFLGSIS 142 (188)
Q Consensus 130 ~~~~~~~~l~~~~ 142 (188)
..|.||+.|...+
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 7888998886553
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.79 E-value=0.14 Score=40.34 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=32.5
Q ss_pred CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 91 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
.+.+++.+..+|.++.+|.++|+.+..++......-.-+.|.-+|+..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 456777888899999999999999887765532122233444466543
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.71 E-value=0.14 Score=37.25 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=68.0
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce----eee
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FVG 78 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~ 78 (188)
-+++|++++++.....+.-|+.-...-...-.....+|..+.|.|++...+++ ..+.|+.=+.......... +..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 46789888887664444566643221111122345789999999998776655 7888888773221111111 111
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc---CCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
....+..+ +.+++...++|+. |.+ +...+.|+.-..... -.. ..+.+.|.++.+-++. +.+|.|.-|
T Consensus 231 -~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~-n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPS-NLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS----EEEEEETTEEEEE--STTEEEEE
T ss_pred -CceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCC-ceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 22335666 5666666665554 444 445555553333221 112 5788888766555544 467777655
No 387
>PHA03098 kelch-like protein; Provisional
Probab=96.67 E-value=0.16 Score=40.00 Aligned_cols=143 Identities=12% Similarity=0.009 Sum_probs=69.1
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC------CeEEEEEeCCcccc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~ 72 (188)
+++..+.|+.+ ..+..||..+++-.. .++..... .++ ..-+++..+.|+.. ..+..||..+. .
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTN--K 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCC--e
Confidence 45666677654 346677876543221 12111111 112 22356666777632 35788887642 1
Q ss_pred cceeeeccCCc--eeEEeecCCCEEEEecCC--------CeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEE
Q 029743 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN--------GLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
...... ...+ -.++...++...+.|+.+ ..+.+||..+.+-. ..+..... ....+.+ +++.++.
T Consensus 418 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~ 493 (534)
T PHA03098 418 WSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-NASLCIF--NNKIYVV 493 (534)
T ss_pred eeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-cceEEEE--CCEEEEE
Confidence 111111 1111 112233456666666642 23888998765432 22221111 1112222 6666677
Q ss_pred EeCC-----CcEEEEeCCCcc
Q 029743 141 ISHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 141 ~~~d-----~~i~iwd~~~~~ 156 (188)
|+.+ +.|.+||..+..
T Consensus 494 GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcCCcccceeEEEeCCCCE
Confidence 7643 468888887654
No 388
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.63 E-value=0.00022 Score=53.54 Aligned_cols=140 Identities=12% Similarity=0.171 Sum_probs=93.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|-|.+..++.++.+..+..||-. ++....+. .+.....++|..++..++ .+-..+.+.+||+.. +..+.+.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~--eytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS--EYTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhh--hhHHHHhc-c
Confidence 456777778888888888888844 33333332 455677888988776654 566678999999974 33344433 2
Q ss_pred CCceeEE--eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 81 PNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 81 ~~~v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.....++ |++.+..++.+...+.+.+|+..+.+.+...-.|.. .+.++++.+.+. .+.++.|..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccce-eeecCcHHHHH
Confidence 2233333 688888888898899999999887766555544644 788999988764 44455454433
No 389
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.62 E-value=0.2 Score=37.92 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=83.6
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeec--c------cccceEEEEEEe-----CC---CEEEEecCCCeEEEEEeCC-
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--F------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWGY- 68 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~i~~~d~~~- 68 (188)
|=.++|.|..+|.+.|.|++....+..-. . ....++++.|+. |+ -.+++|...|.+.+|.+-.
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 44589999999999999998876654421 1 234678888873 22 3678889999999998742
Q ss_pred -ccccccee----eeccCCceeEE--eecC-C-------------------CEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 69 -FKDCSDRF----VGLSPNSVDAL--LKLD-E-------------------DRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 69 -~~~~~~~~----~~~~~~~v~~~--~~~~-~-------------------~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
.+.....+ .. +..++..+ ++.+ | ..++....+..++++.+.+.+........
T Consensus 176 ~~g~f~v~~~~~~~~-~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~ 254 (395)
T PF08596_consen 176 SNGRFSVQFAGATTN-HDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD 254 (395)
T ss_dssp GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred CCCceEEEEeecccc-CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence 11111111 12 34444444 2211 1 12344455667999998776655444322
Q ss_pred CCcceeEEEee-----CCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 122 SEYPIESLALS-----HDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 122 ~~~~v~~~~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
......+.+- ..+..|+.-..+|.|++|.+...+..
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 1234445553 24566777789999999999887644
No 390
>PHA02713 hypothetical protein; Provisional
Probab=96.58 E-value=0.2 Score=39.79 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=68.6
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCCC-----eEEEEEeCCcccc
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDC 72 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~ 72 (188)
++...+.|+.+ ..+..||+.++.-. ..++...... ....-+++..+.|+.++ .+..||..+. .
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SLAVIDDTIYAIGGQNGTNVERTIECYTMGDD--K 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eEEEECCEEEEECCcCCCCCCceEEEEECCCC--e
Confidence 45556666643 34677887665321 1111111111 12233677777887654 4778887642 1
Q ss_pred cceeeeccCCcee--EEeecCCCEEEEecCC-----------------------CeEEEEecccCee--eeecccCCCcc
Q 029743 73 SDRFVGLSPNSVD--ALLKLDEDRVITGSEN-----------------------GLISLVGILPNRI--IQPIAEHSEYP 125 (188)
Q Consensus 73 ~~~~~~~~~~~v~--~~~~~~~~~l~~~~~d-----------------------~~v~~~d~~~~~~--~~~~~~~~~~~ 125 (188)
...+.. -..+.. ++..-+|+..+.|+.+ ..+..||..+.+- +..+..... .
T Consensus 379 W~~~~~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~ 456 (557)
T PHA02713 379 WKMLPD-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-R 456 (557)
T ss_pred EEECCC-CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-c
Confidence 111111 111111 1223467777777654 2477888876543 222221111 1
Q ss_pred eeEEEeeCCCCEEEEEeCC------CcEEEEeCCC
Q 029743 126 IESLALSHDRKFLGSISHD------SMLKLWDLDD 154 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~ 154 (188)
.+++ .-+++..+.|+.+ ..+..||..+
T Consensus 457 -~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 -PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred -CcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 1222 2256666666643 2467788876
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.53 E-value=0.16 Score=35.91 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=66.1
Q ss_pred ceEEEEEEeCCCEEEEec---CCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEe-cccCe
Q 029743 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG-ILPNR 113 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d-~~~~~ 113 (188)
.+.+.+++++++.++... ....++++... +.....+.+ ..+... |++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC---CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999998776655 23345555433 233222233 244445 788888777777666666663 22332
Q ss_pred e-eeecccCCCc-ceeEEEeeCCCCEEEEEe---CCCcEEEEeCC
Q 029743 114 I-IQPIAEHSEY-PIESLALSHDRKFLGSIS---HDSMLKLWDLD 153 (188)
Q Consensus 114 ~-~~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~ 153 (188)
. ...+...... .|..+.++|||..++... .++.|.+--+.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2 1122222111 799999999999887655 35677776554
No 392
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.53 E-value=0.21 Score=37.15 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=74.8
Q ss_pred CeeecccCeEEEE--eCC---CcEEEEEcCCCceeeeecc-ccc---ceEEEEEE-eCC-CEEEEecCCCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGT--SGD---GTLSVCNLRKNTVQTRSEF-SEE---ELTSVVLM-KNG-RKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~--~~d---~~i~i~~~~~~~~~~~~~~-~~~---~v~~~~~~-~~~-~~l~~~~~d~~i~~~d~~~~ 69 (188)
+.|+++++.|+.. .++ ..+.++|..++........ ... .-..+.+. +++ .+|.....+|--+||-++..
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3578888744433 332 2456677776654333321 112 22355554 555 45555667776666655444
Q ss_pred ccccceeeeccCCceeEE--eecCCCEEE-EecCC----CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 70 KDCSDRFVGLSPNSVDAL--LKLDEDRVI-TGSEN----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~--~~~~~~~l~-~~~~d----~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+...+.+.. ....|..+ ++++++.++ ++..+ ..|+..++..+.....+....+ .-..+.|+|++++++...
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCCCCEEEEEE
Confidence 454556665 56667666 577766544 55542 2455556662334445554433 225899999999887443
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.50 E-value=0.076 Score=40.21 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=59.7
Q ss_pred ecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEe---ecCC----------------C
Q 029743 33 SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL---KLDE----------------D 93 (188)
Q Consensus 33 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~---~~~~----------------~ 93 (188)
+......+.+++.+|.+++.++...-|.|.++|+.. +..++.+++ ....-..-. .... .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-Chhhhhhcc-CccceEEEEEeecccccccccccccCCCCcceE
Confidence 334455688999999999999988889999999976 677787777 544322111 1111 1
Q ss_pred -EEEEecCCCeEEEEecccCeeeeecccC
Q 029743 94 -RVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 94 -~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
+++-+-..|.|.||.++.|..+..+...
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 1334456788999999888877766544
No 394
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.44 E-value=0.23 Score=36.50 Aligned_cols=150 Identities=11% Similarity=0.042 Sum_probs=85.9
Q ss_pred eeecccCeEEEEe----------CCCcEEEEEcCCCceeeeeccc---cc----ceEEEEEEeCCCEEEEe--cCCCeEE
Q 029743 2 TFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS---EE----ELTSVVLMKNGRKVVCG--SQSGTVL 62 (188)
Q Consensus 2 ~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~---~~----~v~~~~~~~~~~~l~~~--~~d~~i~ 62 (188)
..||+++.++++. +...|.+||..+-.....+.-. .. ....++++.++++++.. +....|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 5789999998764 2446889999987666544311 11 12345677788877653 3455788
Q ss_pred EEEeCCcccccceeeeccCCceeEEe-ecCCCEEEEecCCCeEEEEecc-cCeeeee----cccCCCcceeEEEeeCCCC
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL-PNRIIQP----IAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~ 136 (188)
+-|+.. ++.+..+.- .....++ ++ .+.+.+.|.||.+.-..+. .|+.... +....+.....-++...+.
T Consensus 122 VVDl~~-~kvv~ei~~---PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 122 VVDLAA-KKVVGEIDT---PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEETTT-TEEEEEEEG---TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEECCC-CceeeeecC---CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 888864 344444332 1122223 22 2468888999999888887 3443321 2222221122334555555
Q ss_pred EEEEEeCCCcEEEEeCCCcc
Q 029743 137 FLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (188)
.++-.+.+|.|+--|+....
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSS
T ss_pred eEEEEecCCEEEEEeccCCc
Confidence 66667888888888877654
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.39 E-value=0.017 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=25.2
Q ss_pred ceeEEEeeCCC---CEEEEEeCCCcEEEEeCCC
Q 029743 125 PIESLALSHDR---KFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 125 ~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~ 154 (188)
.|.++.|+|.. .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68999999854 4778777889999999995
No 396
>PHA03098 kelch-like protein; Provisional
Probab=96.34 E-value=0.37 Score=37.99 Aligned_cols=143 Identities=9% Similarity=0.003 Sum_probs=67.5
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCceeee--ecccccceEEEEEEeCCCEEEEecCC-----CeEEEEEeCCcccc
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDC 72 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~ 72 (188)
++..++.|+.+ ..+..||..+.+-... ++........+ .-+++.++.|+.+ ..+..||..+. .
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGES--K 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCC--c
Confidence 34455666543 2567788776543221 11111112222 2367777777765 24667776532 1
Q ss_pred cceeeeccCCc--eeEEeecCCCEEEEecCC------CeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN------GLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d------~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
...... ...+ -.++..-+++..+.|+.. +.+..||+.+.+-.. .+..... -.+++ ..++..++.|+
T Consensus 370 W~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~-~~~~~iyv~GG 445 (534)
T PHA03098 370 WREEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY--GGCAI-YHDGKIYVIGG 445 (534)
T ss_pred eeeCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc--CceEE-EECCEEEEECC
Confidence 111111 1111 111223456666777632 458889987654322 2211111 11222 23556666665
Q ss_pred CC--------CcEEEEeCCCcc
Q 029743 143 HD--------SMLKLWDLDDIL 156 (188)
Q Consensus 143 ~d--------~~i~iwd~~~~~ 156 (188)
.+ ..+.+||..+..
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ccCCCCCcccceEEEecCCCCc
Confidence 32 238888887653
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.21 Score=35.77 Aligned_cols=119 Identities=9% Similarity=0.065 Sum_probs=73.6
Q ss_pred cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC
Q 029743 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (188)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~ 112 (188)
.+-...+.++.|+|+.+.|++......-.++ +...++.++++.-..-.....+ +..+|+++++-=.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3445569999999999998887766554444 3334676666532011223344 4556666666667788887776544
Q ss_pred eeee-------ec--ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 113 RIIQ-------PI--AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 113 ~~~~-------~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
..+. .+ ..+.......++|.|....|..+-+-.=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 2111 11 11112246789999988888888777767777665
No 398
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.21 E-value=0.1 Score=39.65 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=65.4
Q ss_pred eEEEEEEeCCCEEEEe-cCC----CeEEEEEeCCcccccc-eeeeccCCceeEE-eecCCCEEEEecC-----------C
Q 029743 40 LTSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSE-----------N 101 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~-~~d----~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~-----------d 101 (188)
+....++|++++++.+ +.. ..++++|+.++ ..+. .+.. . ....+ |.++++.++.... .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~-~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN-P--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE-E--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc-c--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467789999988754 333 36999999874 3332 2222 1 12225 8899887665542 2
Q ss_pred CeEEEEecccCee--eeecccCCCcc-eeEEEeeCCCCEEEEEe---CC-CcEEEEeCCCc
Q 029743 102 GLISLVGILPNRI--IQPIAEHSEYP-IESLALSHDRKFLGSIS---HD-SMLKLWDLDDI 155 (188)
Q Consensus 102 ~~v~~~d~~~~~~--~~~~~~~~~~~-v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~ 155 (188)
..|+.|.+.+... ...+......- ...+..++++++|+... .+ ..+++.++...
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 2377787765432 13333332212 56788999999886443 23 45788888764
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.20 E-value=0.44 Score=37.98 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=77.8
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCceeeeecccccceEEEEE-EeCCCEEEEecCCC-----eEEEEEeCCccccc
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~ 73 (188)
++...++|+.+ ..+..||...++=.. +..-..+-..... .-+|...++|+.|| ++..||..+ ...
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC--Ccc
Confidence 45677788877 356677877654222 1111111112222 22678888898886 477777654 222
Q ss_pred ceeeeccCCceeEE--eecCCCEEEEecCCC------eEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 74 DRFVGLSPNSVDAL--LKLDEDRVITGSENG------LISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 74 ~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~------~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
..... ........ ..-+|...++|+.++ .+..||..++.-. ..+..... -..++. -++...+.|+.
T Consensus 409 ~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a~-~~~~iYvvGG~ 484 (571)
T KOG4441|consen 409 TPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--GFGVAV-LNGKIYVVGGF 484 (571)
T ss_pred cccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc--cceEEE-ECCEEEEECCc
Confidence 22222 22222222 356788888887543 4778888776533 23322211 122332 25667777776
Q ss_pred CC-----cEEEEeCCCcc
Q 029743 144 DS-----MLKLWDLDDIL 156 (188)
Q Consensus 144 d~-----~i~iwd~~~~~ 156 (188)
|+ .|..||..+.+
T Consensus 485 ~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 485 DGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccceEEEEcCCCCc
Confidence 65 37778877654
No 400
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.06 E-value=0.075 Score=40.37 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=88.8
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCcee--eeecc-cc---cceE-EEEEEeCCCEEEEecCCCeEEEE-EeCCcccc-c
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEF-SE---EELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKDC-S 73 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~-~~---~~v~-~~~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~-~ 73 (188)
..|||++|+.-+. .++.|+++.+.... +.... .. ..|+ ++..-..|..+...+.||-|.-| |++..+.. +
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 5689999988766 78888887653221 11111 11 1122 12222346678888899988777 55433222 2
Q ss_pred ceeeec--cCCceeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 74 DRFVGL--SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 74 ~~~~~~--~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
...+.. ....+..+. ..+.+.+++-+.+|++.++.....+.+..-..- + .+.-++++|++.+|++- ..|.++++
T Consensus 307 ~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e-~~gki~~~ 383 (733)
T COG4590 307 NHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSE-DQGKIRLA 383 (733)
T ss_pred eeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheee-cCCceEEE
Confidence 222110 112333331 234456778888898888875444433222222 3 46678999999998755 46889999
Q ss_pred eCCCccCCC
Q 029743 151 DLDDILKGS 159 (188)
Q Consensus 151 d~~~~~~~~ 159 (188)
.+++..++-
T Consensus 384 ~l~Nr~Pei 392 (733)
T COG4590 384 QLENRNPEI 392 (733)
T ss_pred EecCCCCCc
Confidence 999876543
No 401
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.01 E-value=0.6 Score=38.25 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=19.3
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEe
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 66 (188)
.|..+..+|+|++++..+..+ |.|-.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 577888888888888877754 444444
No 402
>PRK10115 protease 2; Provisional
Probab=95.92 E-value=0.75 Score=37.62 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=62.1
Q ss_pred eeecccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC------CeEEEEEeCCcc
Q 029743 2 TFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~ 70 (188)
.+|||+++|+.+... ..|++.|+.++..+...... .-..++|.++++.|+....+ ..|+.+++.+..
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 579999998877432 35888899887633222111 12569999999877665432 367777877642
Q ss_pred -cccceeeeccCCcee-EEe-ecCCCEEEEecC---CCeEEEEec
Q 029743 71 -DCSDRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (188)
Q Consensus 71 -~~~~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---d~~v~~~d~ 109 (188)
+....+.. ...... ..+ +.++++++..+. ++.+.+++.
T Consensus 211 ~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 22223333 233233 223 447887665443 456888884
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.89 E-value=0.55 Score=35.81 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=90.3
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCc-----eeeeecccccceEEEEEEe-----CCCEEEEecCCCeEEEEEeCCc-cc---
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF-KD--- 71 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~-~~--- 71 (188)
+...+++|+..|.++||+...+. .+... .-..+|..++..+ ....|++-.. ..+.+|.+... +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP-~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHP-RKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecC-CEEEEEEEEecCCCccc
Confidence 45678999999999999986432 12222 2456888887643 2245555443 46778877321 11
Q ss_pred ----ccceeeeccCCc--eeEE----e-ecC-CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE
Q 029743 72 ----CSDRFVGLSPNS--VDAL----L-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 72 ----~~~~~~~~~~~~--v~~~----~-~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
.+..+.. |.-. ...+ | ... ..++.+=+.||.+.+|+-+.......+... - -...++|.+....++
T Consensus 114 g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-l-lPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 114 GNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-L-LPGPLCYCPRTDSFV 190 (418)
T ss_pred CcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-C-CCcCeEEeecCCEEE
Confidence 1222222 3211 2222 2 233 346777789999999996654434444432 1 344678999888999
Q ss_pred EEeCCCcEEEEeCCCccCC
Q 029743 140 SISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (188)
+++.+..|..|........
T Consensus 191 t~sss~~l~~Yky~~La~~ 209 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASA 209 (418)
T ss_pred EecCceeEEEecHHHhhhc
Confidence 9999999999987765443
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.87 E-value=0.56 Score=35.74 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=72.8
Q ss_pred cccCeEEEEe--CC----CcEEEEEcCCCceeeeeccc---ccceEEEEEEeCCCEEEEecC------------------
Q 029743 5 ADAMKLLGTS--GD----GTLSVCNLRKNTVQTRSEFS---EEELTSVVLMKNGRKVVCGSQ------------------ 57 (188)
Q Consensus 5 ~~~~~l~~~~--~d----~~i~i~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~------------------ 57 (188)
|+|+.++++- .+ |-+.++|-++-+.+...... ...-..+.|.|.-+.++++..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 5777777662 22 45677776665555544421 223456778887777777532
Q ss_pred --CCeEEEEEeCCcccccceeeeccC--CceeEE-e--ecCCCEEEEec-CCCeEEEEec-ccCe----eeeecccC---
Q 029743 58 --SGTVLLYSWGYFKDCSDRFVGLSP--NSVDAL-L--KLDEDRVITGS-ENGLISLVGI-LPNR----IIQPIAEH--- 121 (188)
Q Consensus 58 --d~~i~~~d~~~~~~~~~~~~~~~~--~~v~~~-~--~~~~~~l~~~~-~d~~v~~~d~-~~~~----~~~~~~~~--- 121 (188)
..++.+||+.. .+.++++.- .. ..+..+ | .|+..+-++++ ....|..|-- +.++ .+..+...
T Consensus 219 ~yG~~l~vWD~~~-r~~~Q~idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 219 KYGHSLHVWDWST-RKLLQTIDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -S--EEEEEETTT-TEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccCeEEEEECCC-CcEeeEEec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 35899999986 577777653 22 223334 4 56666555444 4445555543 3332 12222110
Q ss_pred --------------CCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCcc
Q 029743 122 --------------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (188)
Q Consensus 122 --------------~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (188)
.. -|+.|.+|.|.++|.... ..|.|+.||+....
T Consensus 297 ~~~lp~ml~~~~~~P~-LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPP-LITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp SS---GGGGGG-EE-------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccccccCCC-ceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 12 478999999999997666 68999999998754
No 405
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.36 Score=37.52 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=48.8
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEec---------ccCeee---ee-------cccCCCcceeEEEeeCCC---CEEEE
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGI---------LPNRII---QP-------IAEHSEYPIESLALSHDR---KFLGS 140 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~---------~~~~~~---~~-------~~~~~~~~v~~~~~~~~~---~~l~~ 140 (188)
|..+ .++.|..++..+.+|.+.++=. ..|++. ++ +.....-.+..++|+|+. ..|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 4455 5889999999999987654431 122211 11 111111256788999975 57777
Q ss_pred EeCCCcEEEEeCCCccCC
Q 029743 141 ISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~ 158 (188)
-+.|+.|++||+......
T Consensus 186 L~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EecCcEEEEEecCCcchh
Confidence 888999999999876543
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.75 E-value=0.23 Score=34.34 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=48.1
Q ss_pred eecCCCEEEEecCCCeEEEEecccCeeeee-------cc-------cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNRIIQP-------IA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-------~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
...++.++++.+.+|.+++||+.+++.+.. +. .... .|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~-~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSP-NITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCC-cEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 356788999999999999999998765322 11 1223 688899998887776654 5778888765
Q ss_pred Cc
Q 029743 154 DI 155 (188)
Q Consensus 154 ~~ 155 (188)
-.
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.64 E-value=0.081 Score=26.11 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=25.7
Q ss_pred cceEEEEEEeC-C--CEEEEecCCCeEEEEEeCC
Q 029743 38 EELTSVVLMKN-G--RKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 38 ~~v~~~~~~~~-~--~~l~~~~~d~~i~~~d~~~ 68 (188)
+.+.++.|+|. + .+|+.+-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36889999984 4 5888888889999999984
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.63 E-value=0.05 Score=44.55 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=81.7
Q ss_pred CcEEEEEcC--CCceee-----eecccccceEEEEEEe---CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 17 GTLSVCNLR--KNTVQT-----RSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 17 ~~i~i~~~~--~~~~~~-----~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
|.+.||++. .|+... ........+.-+.|.| +.-++..+..++++++...+. .....+.+ |...+..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHh-cCCCccc
Confidence 567888875 343222 2222333445555554 556677777888999888763 22344555 5443332
Q ss_pred ----------E--eecCCCEEEEecCCCeEEEEecc-----cCeeeeecccCCCcceeEEEeeCCC---------CEEEE
Q 029743 87 ----------L--LKLDEDRVITGSENGLISLVGIL-----PNRIIQPIAEHSEYPIESLALSHDR---------KFLGS 140 (188)
Q Consensus 87 ----------~--~~~~~~~l~~~~~d~~v~~~d~~-----~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~ 140 (188)
+ .+|||+.++.++.||.++.|.+. .-.|+...+.|.+++-.|..++.+. .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 2 48999999999999998888764 2235555555643333333343321 12344
Q ss_pred Ee-CCCcEEEEeCCCccCC
Q 029743 141 IS-HDSMLKLWDLDDILKG 158 (188)
Q Consensus 141 ~~-~d~~i~iwd~~~~~~~ 158 (188)
++ ....+++|.....++.
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 44 4567889987766544
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.53 E-value=0.63 Score=33.89 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEec-ccC
Q 029743 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPN 112 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~-~~~ 112 (188)
.....+..+.-+++|++++++.......-|+-.. ..-+.........+..+ |.|++.+.+.+ ..|.|+.=+. ...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 3446688888889999999887777677777532 22222222034678888 89998776655 7788877762 222
Q ss_pred ee----eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 113 RI----IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 113 ~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
+. +..+... +..+..++|.+++...++++ .|.+.
T Consensus 219 ~~w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 219 ETWSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EEE---B-TTSS---S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred cccccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccEE
Confidence 21 1112112 33588999999877777665 44443
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.52 E-value=0.4 Score=34.15 Aligned_cols=102 Identities=12% Similarity=0.219 Sum_probs=59.5
Q ss_pred eCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeee---------
Q 029743 47 KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--------- 116 (188)
Q Consensus 47 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~--------- 116 (188)
..++.|+.|..+| +.++++.......+ +. +...|..+ ..|+-+.+++-++ +.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccc
Confidence 3578899998888 89999843223333 22 23347878 5676666665554 899999987543332
Q ss_pred ------ecccCCCcceeEEE--eeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 117 ------PIAEHSEYPIESLA--LSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 117 ------~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+... . .+...+ -...+...+.......|.+|.....
T Consensus 80 ~~~~~~~~~~~-~-~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 80 SRSLPTKLPET-K-GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccc-C-CeeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence 11111 1 344444 1123333334445568888887763
No 411
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.55 Score=40.30 Aligned_cols=136 Identities=12% Similarity=0.185 Sum_probs=81.0
Q ss_pred eCCCcEEEEEcCCCceeeeecccccceEEEEEE-eC-------CCEEEEecCCCeEEEEEeCCcc--ccccee------e
Q 029743 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KN-------GRKVVCGSQSGTVLLYSWGYFK--DCSDRF------V 77 (188)
Q Consensus 14 ~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~-~~-------~~~l~~~~~d~~i~~~d~~~~~--~~~~~~------~ 77 (188)
+.|+.+.+|+.+++.....+.+....|..+..- |. =+++..-..--.|.++-+.... .....+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458999999999876666666666666666532 21 1333333333456666553211 111111 1
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEec----ccC---e-e----------------eeecc-cCCCcceeEEEe
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGI----LPN---R-I----------------IQPIA-EHSEYPIESLAL 131 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~----~~~---~-~----------------~~~~~-~~~~~~v~~~~~ 131 (188)
. .+..+.|+ ...+|+.+++|-.+ . +|.+ ..+ + + +..+. .+.+ +|..+..
T Consensus 176 ~-dg~~V~~I~~t~nGRIF~~G~dg-~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d-pI~qi~I 250 (1311)
T KOG1900|consen 176 V-DGVSVNCITYTENGRIFFAGRDG-N--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD-PIRQITI 250 (1311)
T ss_pred c-CCceEEEEEeccCCcEEEeecCC-C--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC-cceeeEe
Confidence 2 34567777 46678777766655 3 3333 111 0 0 12223 3334 8999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCC
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
......+.+-+..++|.+|++..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 88888889999999999999987
No 412
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.47 E-value=0.16 Score=35.07 Aligned_cols=65 Identities=29% Similarity=0.334 Sum_probs=46.9
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeee-------c-------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------E-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|....|+.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457889999999999999999987653321 1 2445678888888887766654 46778888653
No 413
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.2 Score=38.78 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=62.5
Q ss_pred EEEeCCCcEEEEEcCCC-c-eeeeecccc----cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCce
Q 029743 11 LGTSGDGTLSVCNLRKN-T-VQTRSEFSE----EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~~-~-~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
+.|-.+..|.-||.+-. . .+...++|. ....|.+-.. .-++++|+.+|.|++||- ...+....+.+ -..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccc-cCCce
Confidence 34556788888998632 2 232333332 2344444433 357899999999999997 33455556777 78899
Q ss_pred eEE-eecCCCEEEEecCCCeEEEEec
Q 029743 85 DAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
..+ .+.+|+.+++.+.. .+.+.++
T Consensus 475 ~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEeccc-EEEEEEE
Confidence 999 79999988776655 4545554
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.36 Score=40.87 Aligned_cols=151 Identities=9% Similarity=-0.012 Sum_probs=83.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC-------c---------eeeeeccc-ccceEEEEEEeCCCEEEE--ecCCCeEE
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN-------T---------VQTRSEFS-EEELTSVVLMKNGRKVVC--GSQSGTVL 62 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~-------~---------~~~~~~~~-~~~v~~~~~~~~~~~l~~--~~~d~~i~ 62 (188)
+.++.-.++++++..+.+.++-...- . ....+.-| .-++..+...+|+...++ .+.+-.|.
T Consensus 48 a~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~ 127 (1405)
T KOG3630|consen 48 AISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVY 127 (1405)
T ss_pred hcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceEE
Confidence 34555556666666676666543321 0 00112211 234556666677665444 33344788
Q ss_pred EEEeCCcccc----ccee------eeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCe-eeeecccCCCcceeEE
Q 029743 63 LYSWGYFKDC----SDRF------VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESL 129 (188)
Q Consensus 63 ~~d~~~~~~~----~~~~------~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~ 129 (188)
.||++..... ..-+ .. ......++ |+|.-. ..+....|+.|++..+.... .+..+... ...+++
T Consensus 128 ~fD~~~fs~s~~~~~~pl~~s~ts~e-k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t--~~~Tav 204 (1405)
T KOG3630|consen 128 SFDLEEFSESRYETTVPLKNSATSFE-KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT--NSQTAV 204 (1405)
T ss_pred EEehHhhhhhhhhhccccccccchhc-cccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc--cceeeE
Confidence 9998642111 1111 11 12223344 666432 34455577778777664322 22222222 268899
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+|+|.|+.++.|-..|++.-|...-.
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecccc
Confidence 99999999999999999998876543
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.38 E-value=0.23 Score=37.71 Aligned_cols=75 Identities=9% Similarity=0.173 Sum_probs=52.2
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC-----------------CEE-EEEeC
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-----------------KFL-GSISH 143 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l-~~~~~ 143 (188)
.+.++ .+|.+++.++...-|.|.++|+.++..++.+++-.++.+.-+.....+ .+| +-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 35566 589999988888889999999999988888877655433322222111 122 34456
Q ss_pred CCcEEEEeCCCccC
Q 029743 144 DSMLKLWDLDDILK 157 (188)
Q Consensus 144 d~~i~iwd~~~~~~ 157 (188)
-|.|.||.++++..
T Consensus 389 Rg~lEvW~~~~g~R 402 (415)
T PF14655_consen 389 RGILEVWSMRQGPR 402 (415)
T ss_pred CCeEEEEecCCCCE
Confidence 78999999998764
No 416
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.92 Score=34.82 Aligned_cols=145 Identities=12% Similarity=0.122 Sum_probs=82.8
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC--ceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce---eeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN--TVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR---FVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~ 79 (188)
|.+.++.+...|.+.=|-+... ...-.+. ...++|.++.|++|.+.|++--.+.+|.+++.......+.. .+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~- 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT- 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-
Confidence 4444445555565655655432 2222222 34569999999999999999999999999998432222111 121
Q ss_pred cCCceeEEeecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEe--CCCcEEEEeCC
Q 029743 80 SPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSIS--HDSMLKLWDLD 153 (188)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~ 153 (188)
....+...+..+..-++.....| +.+|-... .+.++..+.++- .|.-..|.++.+.++-++ ..+.+.=+-++
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEeeeccccccccccEEEe
Confidence 22335555344445666666555 55665443 334555556644 577788888877654333 33444434433
No 417
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.32 E-value=0.67 Score=32.91 Aligned_cols=115 Identities=11% Similarity=-0.065 Sum_probs=71.0
Q ss_pred ceEEEEEEeCCCEEEEecCCC--eEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeee
Q 029743 39 ELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQ 116 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~ 116 (188)
-...+.|..++.++-+.+.-| .|+.+|+.++ +..+...-...-.-..+.--+++.....-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg-~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG-KVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS-SEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCC-cEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 356788877888888877766 6888888763 4333322101111122212234445555678999999999988888
Q ss_pred ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 117 PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
++.-..+ -+.++ .+++.|+.......|+++|..+....
T Consensus 125 ~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 125 TFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 8866533 47777 46777887777888999998876543
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=95.25 E-value=1.1 Score=35.01 Aligned_cols=139 Identities=10% Similarity=-0.088 Sum_probs=65.8
Q ss_pred ccCeEEEEeCC--CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCCC---eEEEEEeCCcccccceeee
Q 029743 6 DAMKLLGTSGD--GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 6 ~~~~l~~~~~d--~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~ 78 (188)
+++..+.|+.+ ..+..|+..+++-. ..++.... ......-+|+..+.|+.++ .+..||..+. .......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCC
Confidence 45566666653 35677876654322 12221111 1112233677777777553 4667776532 1111111
Q ss_pred ccCCc--eeEEeecCCCEEEEecCCCeEEEEecccCee--eeecccCCCcceeEEEeeCCCCEEEEEeCC-----CcEEE
Q 029743 79 LSPNS--VDALLKLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISHD-----SMLKL 149 (188)
Q Consensus 79 ~~~~~--v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i 149 (188)
-..+ -.++..-+++..+.|+ .+.+||.++.+- +..+..... .. +++. -+++..+.|+.+ ..+.+
T Consensus 394 -m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-~~-~~~v-~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 394 -TYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-NP-ELII-VDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred -CCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-cc-EEEE-ECCEEEEECCcCCCcccceEEE
Confidence 1111 1122344566666664 467888876542 222222211 12 2222 266777777754 35667
Q ss_pred EeCCCc
Q 029743 150 WDLDDI 155 (188)
Q Consensus 150 wd~~~~ 155 (188)
||..+.
T Consensus 467 Yd~~~~ 472 (480)
T PHA02790 467 YNNRTY 472 (480)
T ss_pred EECCCC
Confidence 776653
No 419
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.08 E-value=1 Score=33.81 Aligned_cols=121 Identities=8% Similarity=-0.056 Sum_probs=57.9
Q ss_pred cEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecC---CC-eEEEEEeCCcccccceeeeccCCceeEE---ee
Q 029743 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQ---SG-TVLLYSWGYFKDCSDRFVGLSPNSVDAL---LK 89 (188)
Q Consensus 18 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~---d~-~i~~~d~~~~~~~~~~~~~~~~~~v~~~---~~ 89 (188)
.|...|+.+|+....+. -...+..+.|+|.. ..|+.|.+ +. .-+||-++..+...+.+.. +.....+- |.
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCccccccccc
Confidence 35556777776544443 45667889999955 44444433 22 2467877766666555554 43322222 58
Q ss_pred cCCCEEEEec-----CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 90 LDEDRVITGS-----ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 90 ~~~~~l~~~~-----~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
|+|..+..-+ .+..|.-+|+.+++........ ....+--++|+++++.=+.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCC
Confidence 9998765432 2335667788777654333322 3445566788887763333
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.01 E-value=1.6 Score=35.61 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=84.7
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce------eeeec----------------ccccceEEEEEEe--CCCEEEEecCCCeEE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSE----------------FSEEELTSVVLMK--NGRKVVCGSQSGTVL 62 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~------~~~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 62 (188)
.++|+++. .+.|+||++..-.. ...+. .-+..|+.|.... ....|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 58999999764211 00000 0112344444433 346788999999999
Q ss_pred EEEeCCcc----------c---------ccceeeeccCCceeEE-ee--cCCCEEEEecCCCeEEEEecccCee----ee
Q 029743 63 LYSWGYFK----------D---------CSDRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRI----IQ 116 (188)
Q Consensus 63 ~~d~~~~~----------~---------~~~~~~~~~~~~v~~~-~~--~~~~~l~~~~~d~~v~~~d~~~~~~----~~ 116 (188)
+|..+.-- . +...+. -...++.+ ++ ...+++|++++...|.||-...... ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 99763100 0 111111 33456777 55 6777888888888888887654211 11
Q ss_pred ecccCCCcceeEEEeeCCC---C---EEEEEeCCCcEEEEeCC
Q 029743 117 PIAEHSEYPIESLALSHDR---K---FLGSISHDSMLKLWDLD 153 (188)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~iwd~~ 153 (188)
... + ...|-+++|-++. . .|++++-.|.+.+|++.
T Consensus 206 s~~-~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 206 SHQ-H-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccc-c-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 111 2 2268899997743 2 67788889999998883
No 421
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.00 E-value=0.17 Score=24.44 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=24.0
Q ss_pred cccCeEEEEeC-CCcEEEEEcCCCceeeeecc
Q 029743 5 ADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF 35 (188)
Q Consensus 5 ~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~ 35 (188)
|++++|+++.. ++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 67887777654 78999999988887776663
No 422
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.79 E-value=1.3 Score=33.38 Aligned_cols=145 Identities=13% Similarity=0.108 Sum_probs=83.9
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEE----eCCCE--EEEec-CC---CeEEEEEeCCcccccc
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRK--VVCGS-QS---GTVLLYSWGYFKDCSD 74 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---~~i~~~d~~~~~~~~~ 74 (188)
|...+++.....+-+.+||+... .++.+. .+++..+... -+|+. |+.++ .+ ..|++|.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 45667777788899999998754 444554 2334443322 24443 33333 32 4799998863222333
Q ss_pred eeee------ccCCceeEE--e-ec-CCC-EEEEecCCCeEEEEecc---cC----eeeeecccCCCcceeEEEeeCCCC
Q 029743 75 RFVG------LSPNSVDAL--L-KL-DED-RVITGSENGLISLVGIL---PN----RIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~-~~~-~l~~~~~d~~v~~~d~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
.+.. ..-..++.+ + ++ +|. +++....+|.+..|-+. .+ +.++.|...+ .+..+.......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccC
Confidence 3221 011223444 3 44 455 55667788998888775 22 4577777653 688999998888
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 029743 137 FLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~ 154 (188)
+|..+-++.-|.-|+.+.
T Consensus 221 ~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEEETTTEEEEEESSC
T ss_pred CEEEecCccEEEEEecCC
Confidence 999999888888888764
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.69 E-value=1.4 Score=35.53 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=59.1
Q ss_pred eCCCcEEEEEcCCCceeeeec-ccccceEEEEEEe--CCCEEEEecCCCeEEEEEeC-----Ccc---ccccee--eecc
Q 029743 14 SGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWG-----YFK---DCSDRF--VGLS 80 (188)
Q Consensus 14 ~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~-----~~~---~~~~~~--~~~~ 80 (188)
....++.|||...+.....-. ...+.|..+.|.. +++.+.+.+..+.|.+|.-. ... ..++.+ .. +
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~-~ 126 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS-H 126 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec-C
Confidence 344678999998876443322 3467899999964 78888888888899888541 111 122222 22 2
Q ss_pred C-CceeEE-eecCCCEEEEecCCCeEEEEec
Q 029743 81 P-NSVDAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 81 ~-~~v~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
+ .+|... |.++|.+++.++ +.+.|+|-
T Consensus 127 T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2 456666 778887665544 35777763
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.59 E-value=0.65 Score=38.06 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=49.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC----------Cce--e-eee--------cccccceEEEEEEeC---CCEEEEec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NTV--Q-TRS--------EFSEEELTSVVLMKN---GRKVVCGS 56 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~l~~~~ 56 (188)
+.+||+|++|+..+..+ |.|..+.. |.. . +.+ ..+...|..+.|+|. +.+|+.-.
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35789999999988855 44444321 111 1 111 123457899999995 58899999
Q ss_pred CCCeEEEEEeCCcccccce
Q 029743 57 QSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 57 ~d~~i~~~d~~~~~~~~~~ 75 (188)
.|+.+++||+.....+.+.
T Consensus 169 sdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 169 SDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred cCCEEEEEecCCCCCCeEE
Confidence 9999999999754444333
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.57 E-value=2.4 Score=35.65 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=77.8
Q ss_pred EEEEEcCCCceeeeecc-cccc---eEEEEEEeC-CCEEEEecC----------CCeEEEEEeCCcccccceeee-ccCC
Q 029743 19 LSVCNLRKNTVQTRSEF-SEEE---LTSVVLMKN-GRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVG-LSPN 82 (188)
Q Consensus 19 i~i~~~~~~~~~~~~~~-~~~~---v~~~~~~~~-~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~-~~~~ 82 (188)
++++|..+-+.+...+. .... +.++.|..| +.++++|.. .|.|.+|.+.. ...++.... .-.+
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKG 830 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeecc
Confidence 45566555443332221 1122 344447766 566666642 57899998875 344444433 0234
Q ss_pred ceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 83 SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+.++.--+|+++|.-+ ..|++|+..+++.++.-..+.. ++..+...-.+..++.|..-+.+.+-..+
T Consensus 831 av~aL~~fngkllA~In--~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAGIN--QSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred ceeehhhhCCeEEEecC--cEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 55555445777776544 4799999887766655555544 77888888888888888766665554433
No 426
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.37 E-value=1.3 Score=31.56 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=73.5
Q ss_pred EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-cCCceeEE--e
Q 029743 12 GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-SPNSVDAL--L 88 (188)
Q Consensus 12 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~--~ 88 (188)
..-.++...+||..+-+.+..+. ....=+.++ .+++.|+.+.....++.+|..+. ...+.+.-. ...++..+ .
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEE
T ss_pred EEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeE
Confidence 33457888999998888777775 334556666 57888888777778999987653 333333220 33444444 1
Q ss_pred -ecCCCEEEEecCCCeEEEEecccCeeeeecc-----------cC---CCcceeEEEeeCCCCEEEEEe
Q 029743 89 -KLDEDRVITGSENGLISLVGILPNRIIQPIA-----------EH---SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 89 -~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----------~~---~~~~v~~~~~~~~~~~l~~~~ 142 (188)
--+|...+=.-....|...|..+|+....+. .. ...-.+.+++.|..+.|...+
T Consensus 181 E~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 2366655555566678888888887654331 00 012578999998776665444
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.28 E-value=2.5 Score=35.14 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=66.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccc--------eEEEEEE----------------eCCCEEEEecCCCeEE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLM----------------KNGRKVVCGSQSGTVL 62 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~d~~i~ 62 (188)
+..|+.++.++.|+-.|.++|+.+..+...... ...+.+- ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567778888899999999999888776522110 1222221 1235788888899998
Q ss_pred EEEeCCcccccceeeeccCCce-------------eEE-eec--CCCEEEEecC----------CCeEEEEecccCeeee
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSV-------------DAL-LKL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v-------------~~~-~~~--~~~~l~~~~~----------d~~v~~~d~~~~~~~~ 116 (188)
-.|.+++ +.+..+.. .+.+ ... ..| .+..+++|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TG-k~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTG-KLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCC-CEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 8888774 44433211 1100 011 122 2445555532 5789999999988765
Q ss_pred ec
Q 029743 117 PI 118 (188)
Q Consensus 117 ~~ 118 (188)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 54
No 428
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.26 E-value=2.3 Score=34.09 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=75.9
Q ss_pred cCeEEEEeCC------CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC-C-----eEEEEEeCCcccc
Q 029743 7 AMKLLGTSGD------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-G-----TVLLYSWGYFKDC 72 (188)
Q Consensus 7 ~~~l~~~~~d------~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-----~i~~~d~~~~~~~ 72 (188)
+.+++.|+.. ..+..||..++.-.. .++ ......+++.. ++...++|+.+ + ++..||.....
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-- 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-- 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--
Confidence 4566777766 356788887763322 222 22223344433 56777888888 3 57777776422
Q ss_pred cceeeeccCCce--eEEeecCCCEEEEecCCCe-----EEEEecccCee--eeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 73 SDRFVGLSPNSV--DALLKLDEDRVITGSENGL-----ISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 73 ~~~~~~~~~~~v--~~~~~~~~~~l~~~~~d~~-----v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
...+.. -..+- ..+..-+|...++|+.||. |..||..+.+- +..+..... ......+ +|...++|+.
T Consensus 361 W~~~a~-M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~~gv~~~--~g~iYi~GG~ 436 (571)
T KOG4441|consen 361 WTPVAP-MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-GHGVAVL--GGKLYIIGGG 436 (571)
T ss_pred eeccCC-ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee-eeEEEEE--CCEEEEEcCc
Confidence 222111 11111 1123457888888888864 77788776542 222221111 1112222 6777777774
Q ss_pred CC------cEEEEeCCCcc
Q 029743 144 DS------MLKLWDLDDIL 156 (188)
Q Consensus 144 d~------~i~iwd~~~~~ 156 (188)
++ .+..||..+..
T Consensus 437 ~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCCccccceEEEEcCCCCc
Confidence 43 57778877654
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.17 E-value=0.067 Score=43.87 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=82.9
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEE-----------EEeCCCEEEEecCCCeEEEEEeCCc----
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV-----------LMKNGRKVVCGSQSGTVLLYSWGYF---- 69 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~d~~i~~~d~~~~---- 69 (188)
++.-++..+-.++++++.++..... ..+.+|...+..++ .+|||+.++.++.||.++.|.+--.
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~ 271 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV 271 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence 3556677777788998887654322 33445655544332 6899999999999998888876322
Q ss_pred ccccceeeeccC-CceeEE-eecC-------C--CEEEEecC-CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 70 KDCSDRFVGLSP-NSVDAL-LKLD-------E--DRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 70 ~~~~~~~~~~~~-~~v~~~-~~~~-------~--~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
.+++...+. |. .+..|. |+.+ + .++++++. +..+++|.....+|+..+. .+ .|..+. -+++..
T Consensus 272 ~rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~--~d-~v~iV~-p~~~~v 346 (1283)
T KOG1916|consen 272 HRCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL--ID-GVQIVG-PHDGEV 346 (1283)
T ss_pred HhhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc--cc-ceEeec-CCCccc
Confidence 245555566 65 333333 4321 1 23445543 4568899877777662211 12 233333 223321
Q ss_pred ------------EEEEeCCCcEEEEeCCC
Q 029743 138 ------------LGSISHDSMLKLWDLDD 154 (188)
Q Consensus 138 ------------l~~~~~d~~i~iwd~~~ 154 (188)
+++.+.++.|.+|.-+.
T Consensus 347 ~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 347 TDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 23445678888885443
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.98 E-value=1 Score=35.61 Aligned_cols=101 Identities=9% Similarity=-0.042 Sum_probs=59.8
Q ss_pred CeEEEEeCCCcEEEEEcCC-----Cceeeeecc-c--cc--ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 8 MKLLGTSGDGTLSVCNLRK-----NTVQTRSEF-S--EE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~-----~~~~~~~~~-~--~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
.+||. -....|.||.+.. ++.+..-.. . .- -...+.|+|....|++-.....-.+++++.....++.-.
T Consensus 74 aLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi 152 (671)
T PF15390_consen 74 ALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI 152 (671)
T ss_pred ceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec
Confidence 34444 4557899998852 222221111 1 11 134678999988888766655555667764433333322
Q ss_pred eccCCceeEE-eecCCCEEEEecCCC-eEEEEecc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENG-LISLVGIL 110 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~ 110 (188)
. ..+.|.|. |.+||++|+++-... .-++||-.
T Consensus 153 ~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 153 K-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred c-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3 56778888 889999887665442 35688853
No 431
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.74 E-value=0.38 Score=23.18 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred cCCCEEEEec-CCCeEEEEecccCeeeeecccCCCcceeEEEe
Q 029743 90 LDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (188)
Q Consensus 90 ~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 131 (188)
|++++|+++. .++.|.++|..+++.+..+... . ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-G-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-C-CCceEEe
Confidence 5677766655 5789999999888877776654 2 2445555
No 432
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.69 E-value=2.9 Score=33.19 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=83.2
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecc--cc--cceEEEEEEeCCCEEEEec------CCCeEEEEEeCCcccccceee
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEF--SE--EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~ 77 (188)
..++.++.++.|.-+|.++|+.+..... +. ..+.+.-.--++ .++++. .++.|.-+|..++ +.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTG-KLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCC-ceeEecc
Confidence 4677788899999999999998776542 11 111111111134 444433 2578888887653 3322211
Q ss_pred ec------------------------------cCCceeEE--eecCCCEEEEecCC-----C-----------eEEEEec
Q 029743 78 GL------------------------------SPNSVDAL--LKLDEDRVITGSEN-----G-----------LISLVGI 109 (188)
Q Consensus 78 ~~------------------------------~~~~v~~~--~~~~~~~l~~~~~d-----~-----------~v~~~d~ 109 (188)
.. ....+... +.|...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 10 01122222 34545555555421 2 5777888
Q ss_pred ccCeeeeecccCCC--------cceeEEEeeCCCC---EEEEEeCCCcEEEEeCCCccC
Q 029743 110 LPNRIIQPIAEHSE--------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 110 ~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~ 157 (188)
++|+....++.... .+..-+.+..+|+ .++.+..+|.+++.|-.+++.
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 89988766654221 0111122324665 677888999999999988765
No 433
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.62 E-value=0.58 Score=37.10 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=41.8
Q ss_pred eCCCEEEEecCCCeEEEEEeCC---cccccce-----------eee---cc-------CCceeEE-eec----CCCEEEE
Q 029743 47 KNGRKVVCGSQSGTVLLYSWGY---FKDCSDR-----------FVG---LS-------PNSVDAL-LKL----DEDRVIT 97 (188)
Q Consensus 47 ~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~-----------~~~---~~-------~~~v~~~-~~~----~~~~l~~ 97 (188)
++...++.+..||.+....... .+..... +.+ .. ...+..+ .++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888899888887753 1111110 100 00 1122233 333 6779999
Q ss_pred ecCCCeEEEEecccCeeeee
Q 029743 98 GSENGLISLVGILPNRIIQP 117 (188)
Q Consensus 98 ~~~d~~v~~~d~~~~~~~~~ 117 (188)
.+.|+.+++||+.++.++.+
T Consensus 236 l~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EETTSEEEEEETTTTCEEEE
T ss_pred EeCCCeEEEEECCCCeEEEE
Confidence 99999999999999988554
No 434
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.55 E-value=1.2 Score=28.19 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=63.8
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCC--------ceeeeecccccceEEEEEEe-----CCCEEEEecCCCeEEEEEeCCc
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
|......|++++.-++|.|.+.... ..+..+. -...|++++-.+ ....|+.|+.. .+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccC
Confidence 4445556888899999999987632 2233333 456788887655 23567777654 7999999753
Q ss_pred ccccceeeeccCCceeEE-e---ec-CCCEEEEecCCCeEEEEecccCeeeee
Q 029743 70 KDCSDRFVGLSPNSVDAL-L---KL-DEDRVITGSENGLISLVGILPNRIIQP 117 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~ 117 (188)
.... .+. -...+.++ + .. +..++++ +.+..|.=||....+...+
T Consensus 84 ~d~F--yke-~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLF--YKE-VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhh--hhh-CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEE
Confidence 3222 222 33456666 3 12 3344444 4445666676554444443
No 435
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.21 E-value=0.73 Score=32.15 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 47 (188)
++.-+|++.++.-..++|...|..+|+.+..++-....+++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 4445677888888889999999999999999888888999999964
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.18 E-value=0.87 Score=30.20 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.7
Q ss_pred ceEEEEEEeCC------CEEEEecCCCeEEEEEeC
Q 029743 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 39 ~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~ 67 (188)
.+.+++|||.| ..|++...++.+.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67888899854 367888888888888754
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.88 E-value=2 Score=35.07 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=65.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCC-------C----c---------eeeeecccccceEEEEEE--eCCCEEEEecCCCeEEE
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLL 63 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~ 63 (188)
+...|+.+..||.|.+|..+. . . +...+ .-...+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 345788889999999997631 0 0 01111 134568999998 77788999988888888
Q ss_pred EEeCCcccc--cceeeeccCCceeEE-ee-----cCCC-EEEEecCCCeEEEEec
Q 029743 64 YSWGYFKDC--SDRFVGLSPNSVDAL-LK-----LDED-RVITGSENGLISLVGI 109 (188)
Q Consensus 64 ~d~~~~~~~--~~~~~~~~~~~v~~~-~~-----~~~~-~l~~~~~d~~v~~~d~ 109 (188)
|-+...... ...-.. +...|-++ |- +.|. .+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 876542111 111112 34556666 52 2333 7778889999999887
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=92.68 E-value=3.2 Score=30.82 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=71.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeee-cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee--
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (188)
.+.|++.+++++. .|.+..-.-..++.-... ......+.++.+.++++.++++ ..|.+.+-.-+ .+........
T Consensus 179 ~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d-~G~sW~~~~~~~ 255 (334)
T PRK13684 179 RRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD-DLESWSKPIIPE 255 (334)
T ss_pred EECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-CCCccccccCCc
Confidence 3456665555543 355443211222211111 2334578899999988876665 45665432222 2222221111
Q ss_pred -ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC--CcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 -LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 -~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.....+..+ +.+++..+++ +.+|.+. .....++.-....... ....+.+.|..+++.++ .+..|.|..|+
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred cccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 011235556 5777765554 4566553 3444444333322111 12477888887666655 55678887765
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.57 E-value=0.59 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=18.9
Q ss_pred cccceEEEEEEeCCCEEEEecC-C--CeEEEE
Q 029743 36 SEEELTSVVLMKNGRKVVCGSQ-S--GTVLLY 64 (188)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~ 64 (188)
....-....|+|||+.|+.++. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778999999988876544 3 454444
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.49 E-value=5.6 Score=33.19 Aligned_cols=152 Identities=10% Similarity=-0.025 Sum_probs=84.6
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccce-------------EEEEEEe--CCCEEEEecC----------CCe
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------------TSVVLMK--NGRKVVCGSQ----------SGT 60 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~ 60 (188)
.++.++.++.|+.|.-.|.++|+....+.. .+.+ ..+.-.| .+..+++++. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345788888999999999999988765531 1111 0111112 2345555532 578
Q ss_pred EEEEEeCCcccccceeeec----------------cCCceeEE--eecCCCEEEEec------------------CCCeE
Q 029743 61 VLLYSWGYFKDCSDRFVGL----------------SPNSVDAL--LKLDEDRVITGS------------------ENGLI 104 (188)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~----------------~~~~v~~~--~~~~~~~l~~~~------------------~d~~v 104 (188)
|+-+|+.++ +.+-.+..- ....+... +.++..+++.+. ..+.|
T Consensus 338 I~A~Da~TG-kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 338 IRAFDVNTG-ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEECCCC-cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 999998763 443333210 01111111 234333333321 12446
Q ss_pred EEEecccCeeeeeccc-CCC-------cceeEEEeeC-CCC---EEEEEeCCCcEEEEeCCCccCCC
Q 029743 105 SLVGILPNRIIQPIAE-HSE-------YPIESLALSH-DRK---FLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 105 ~~~d~~~~~~~~~~~~-~~~-------~~v~~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.-.|+++|+....++. |.+ .+..-+.+.. +|+ .++.++.+|.++++|-++++..-
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 6778888888776654 221 0111122322 553 67888899999999999886543
No 441
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=92.26 E-value=1.7 Score=36.37 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=43.1
Q ss_pred CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCC-----eEEEEEeCCcccccceee
Q 029743 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 15 ~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~~~d~~~~~~~~~~~~ 77 (188)
..+.|.+-|.........-..+..++.+..|||||+.|+. .+..+ .|.+-++.+.+..+..+.
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 3358888887765554330346788999999999999987 33333 588888876555444444
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.07 E-value=3.4 Score=29.75 Aligned_cols=150 Identities=11% Similarity=-0.025 Sum_probs=90.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee--ec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--GL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~ 79 (188)
+-+|||..-+++...+.|--.|..+|+....-.+.......|...|+|..-++-+.. -|.-.|-++ -.+..+. ..
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt--~evt~f~lp~~ 144 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT--LEVTRFPLPLE 144 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc--cceEEeecccc
Confidence 445677777777777777777888887766555566667788888888766654333 344444332 1122221 10
Q ss_pred c-CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~-~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
| ....... |.+.|.+.+++...-.= -.|.. ...+..+....+...+.|+..|+|..-++.-.++.|-..|.....
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G~yG-rLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIGAYG-RLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccccce-ecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCC
Confidence 1 2233344 88999998888742111 11211 223445555544467889999999887776677777777776654
No 443
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.82 E-value=1.6 Score=34.61 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=40.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCC----Cceee-----------eecc-----------cccceEEEEEEe----CCCEEEEe
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK----NTVQT-----------RSEF-----------SEEELTSVVLMK----NGRKVVCG 55 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~----~~~~l~~~ 55 (188)
+...++.+..||.+....... +.... .+.+ ....+..++.++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566788888888887776653 11111 0000 123345566665 67899999
Q ss_pred cCCCeEEEEEeCCccccc
Q 029743 56 SQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 56 ~~d~~i~~~d~~~~~~~~ 73 (188)
+.|+.+++||+.+ +.++
T Consensus 237 ~~D~~LRiW~l~t-~~~~ 253 (547)
T PF11715_consen 237 SRDHTLRIWSLET-GQCL 253 (547)
T ss_dssp ETTSEEEEEETTT-TCEE
T ss_pred eCCCeEEEEECCC-CeEE
Confidence 9999999999986 4553
No 444
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.70 E-value=4.2 Score=30.11 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=51.3
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-ccccee----eeccCCceeEE-eecC---CCEEEEecC-C-------
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF----VGLSPNSVDAL-LKLD---EDRVITGSE-N------- 101 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~~~-d------- 101 (188)
..++|+|.|+|+++++ ...|.|++++.+... ..+..+ .. .......+ ++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~-~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFAD-GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTS-TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccccccccc-ccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4679999999887765 458999999932211 111111 11 23345556 6773 334433332 1
Q ss_pred -CeEEEEecccC-------e-eeeeccc--CCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 102 -GLISLVGILPN-------R-IIQPIAE--HSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 102 -~~v~~~d~~~~-------~-~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
..|.-|....+ + .+..+.. ........|+|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 13433443322 1 1111122 1112456799999997666665443
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.66 E-value=2.7 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.5
Q ss_pred ceeEEEeeCCC------CEEEEEeCCCcEEEEeCCC
Q 029743 125 PIESLALSHDR------KFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 125 ~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~ 154 (188)
.+..++|+|.| -.|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999943 3678888999999998764
No 446
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.56 E-value=5.6 Score=31.20 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=61.4
Q ss_pred CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc---eeEE-eecC
Q 029743 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS---VDAL-LKLD 91 (188)
Q Consensus 16 d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~---v~~~-~~~~ 91 (188)
.....++|. .|..+..+.........+...++|.+++... ..+..+|+- ++.+....- .... -..+ ..|+
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l-~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDL-PGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE---TTEE-B-S-EEE-TT
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeec-CCcccccccccEECCC
Confidence 345556663 3555555442222221266678888887665 677788774 454444432 2221 2334 4788
Q ss_pred CCEEEEecC-------------CCeEEEEecccCeeeeecc---------c----------------CC-CcceeEEEee
Q 029743 92 EDRVITGSE-------------NGLISLVGILPNRIIQPIA---------E----------------HS-EYPIESLALS 132 (188)
Q Consensus 92 ~~~l~~~~~-------------d~~v~~~d~~~~~~~~~~~---------~----------------~~-~~~v~~~~~~ 132 (188)
|++|+.+.. ...|..+| .+|+.+..+. . .. -..++++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 888887761 11233444 4444332210 0 00 0258899999
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCCccC
Q 029743 133 H-DRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 133 ~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+ ++.+|+++-.-..|...|.++...
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcE
Confidence 9 555556555556888888666543
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.53 E-value=0.93 Score=35.32 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=48.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
...++|+|+..|.|++||--..+....+++....|..+..+.+|+++++.+.. .+.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 34689999999999999966555556677888899999999999988776654 56677764
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.40 E-value=4.6 Score=29.93 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=30.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce---eeee----cccccceEEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS----EFSEEELTSVVLMKN 48 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~----~~~~~~v~~~~~~~~ 48 (188)
|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|+
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 579999877665 6689999999 44433 2222 123456899999994
No 449
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.36 E-value=7.7 Score=32.45 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=67.1
Q ss_pred cceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc-c---cccceeeeccCCc----------eeEE-eecCCCEEEEecCC
Q 029743 38 EELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF-K---DCSDRFVGLSPNS----------VDAL-LKLDEDRVITGSEN 101 (188)
Q Consensus 38 ~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-~---~~~~~~~~~~~~~----------v~~~-~~~~~~~l~~~~~d 101 (188)
.+...++|+| +.+.||+....|...+|++... + ..+..... ..+. -..+ |.++...|++++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 4677899999 5578999999999999999211 1 11111111 1111 1233 66666666666654
Q ss_pred CeEEEEecccCeeee-ecccCCCcceeEEEeeCC--CCEEEEEeCCCcEEEEeCCC
Q 029743 102 GLISLVGILPNRIIQ-PIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 102 ~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+.++|+.+..... .........|..+.-++. +..++.. ...|...++..
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 47789998766533 222222236888888876 2333322 35677777776
No 450
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=91.31 E-value=0.72 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.2
Q ss_pred eEEEEeCCCcEEEEEcCCCceeee
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTR 32 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~ 32 (188)
.++.++.++.++.+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888899999999998887654
No 451
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=5 Score=29.23 Aligned_cols=142 Identities=10% Similarity=0.088 Sum_probs=84.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce--eeeccCC
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVGLSPN 82 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~ 82 (188)
+++.+.+..+.-++|.|+.+......+.. ..+--.+ |.-.|+++..+..+.-+.+.|+.....+... ... ...
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~-~~~ 172 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGG 172 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCC
Confidence 56777777888899999987543322221 1122333 3446889998887777889998764333222 121 222
Q ss_pred ceeEEeecCCCEEEEecCCCeEEEEecccCe---eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 83 SVDALLKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
....+ .-.|++-..+..++-+.+.|+.... .+...... . .+.++..+++..+++.. +..+.+-|..+..
T Consensus 173 d~~~v-~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g-~-g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 173 DTHDV-AISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG-P-GTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred CceeE-EEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC-C-ceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 22222 3357788888888899999987533 22222222 2 47888888776665543 3345666666554
No 452
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.63 E-value=6.4 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=27.6
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
.+++..++.||++++++.-..+|.+.+...+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 35799999999999999999999988887654
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.38 E-value=4.4 Score=27.93 Aligned_cols=105 Identities=16% Similarity=0.037 Sum_probs=59.3
Q ss_pred CEEEEecCCCeEEEEEeCCc-ccccceeeeccCCceeEE-eecCCCEEEEecCC---C---eEEEE---ecc--cCeeee
Q 029743 50 RKVVCGSQSGTVLLYSWGYF-KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---G---LISLV---GIL--PNRIIQ 116 (188)
Q Consensus 50 ~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~---~v~~~---d~~--~~~~~~ 116 (188)
+.|+.+.....|.+|++... .+.+..+. .-+.+..+ ++..|+|+++-=.+ . .+++| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 45555566778999999732 23344444 23667777 78899999976432 2 45554 221 111111
Q ss_pred -eccc--------------------CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 117 -PIAE--------------------HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 117 -~~~~--------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+.+ +...++.+++..|-..-|+.|+ ++.+.+|.+.....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 1111 1112567788887444444444 67889998876544
No 454
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.20 E-value=7 Score=30.00 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=25.2
Q ss_pred ceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 125 PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 125 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.|..++..+..+.|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388999999889999999999999999975
No 455
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.96 E-value=7.2 Score=29.81 Aligned_cols=109 Identities=10% Similarity=0.019 Sum_probs=57.5
Q ss_pred cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-----ccceeee-ccCCceeEE-eecCCCEEEEecCCCeEEEEe
Q 029743 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-----CSDRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (188)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d 108 (188)
....+.++.+.+++..++++ ..|.+.. .... +. ....... .....+..+ +.+++..+++ +..|.+..-
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~-G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s- 353 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYV-SKGT-GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS- 353 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEE-ecCC-CCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-
Confidence 34568899999888877766 4455433 2222 22 1121111 011236666 5666665544 556655444
Q ss_pred cccCeeeeecc--cCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 109 ILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 109 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
...|+.-.... ..-....+.+.|.++++-++++ .+|.|.-|
T Consensus 354 ~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 354 TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 33444322222 1111268899998776665544 67776654
No 456
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.92 E-value=10 Score=31.78 Aligned_cols=108 Identities=11% Similarity=0.108 Sum_probs=61.2
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-----ceeeeecccc----------cceEEEEEEeCCCEEEEecCCCeEEEE
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSE----------EELTSVVLMKNGRKVVCGSQSGTVLLY 64 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~~~ 64 (188)
++|+| +.+.||+....|...||++... ........+. ..-..+.|.++-+.|+.++.. .+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEE
Confidence 57888 4567999999999999999221 1111111111 223478898888888887765 68899
Q ss_pred EeCCcccccceeeeccCCceeEE-eecC--CCEEEEecCCCeEEEEeccc
Q 029743 65 SWGYFKDCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILP 111 (188)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~ 111 (188)
|++................+..+ -+|. +..++..+ ..|...++..
T Consensus 230 d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 230 DFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred ECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 99753221112221134556666 3554 22332222 3465566654
No 457
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=89.90 E-value=11 Score=32.02 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=82.4
Q ss_pred cCeEEEEeC----------CCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 7 AMKLLGTSG----------DGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 7 ~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
+.+++.|.. .|.|.|+....++.++.+.. -.+.+.++.. -+|+++|.- +..|++|++.. ++.++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~-~~eLr 862 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTT-ERELR 862 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccc-cceeh
Confidence 556666642 46777877766433333322 1234444432 156666554 45899999976 34555
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecc--cCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL--PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.-.. +..++..+ ..-.|..+++|..=+.+.+...+ .|.....-+.-...+.+.+.+-.+. .++.+..+|.+.+-.
T Consensus 863 ~e~~-~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 863 IECN-ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVR 940 (1096)
T ss_pred hhhc-ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc-eEEeecccccEEEEE
Confidence 5445 67778888 57789999999987777665444 3333322221112267777776554 444555677777665
Q ss_pred CC
Q 029743 152 LD 153 (188)
Q Consensus 152 ~~ 153 (188)
..
T Consensus 941 ~d 942 (1096)
T KOG1897|consen 941 KD 942 (1096)
T ss_pred ec
Confidence 44
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=89.87 E-value=8.2 Score=30.29 Aligned_cols=138 Identities=9% Similarity=-0.093 Sum_probs=64.8
Q ss_pred cCeEEEEeCC-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC--CeEEEEEeCCcccccceee
Q 029743 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 7 ~~~l~~~~~d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~ 77 (188)
+..+++|+.+ ..+..||..++.-.. .++...... ++ ..-++...+.|+.+ ..+..||.... ....+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDA--AWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCC--eEEECC
Confidence 4455666643 246678877654322 222111111 22 22367777777754 35777876431 111111
Q ss_pred eccCCcee--EEeecCCCEEEEecCC---CeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 78 GLSPNSVD--ALLKLDEDRVITGSEN---GLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 78 ~~~~~~v~--~~~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
. -..+.. ++..-+|+..+.|+.+ ..+..||.++.+-.. .+..... .. +++ .-+++..+.|+ .+.+|
T Consensus 348 ~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~-~~-~~~-~~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 348 S-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY-KS-CAL-VFGRRLFLVGR---NAEFY 420 (480)
T ss_pred C-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc-cc-eEE-EECCEEEEECC---ceEEe
Confidence 1 111111 2234467777777754 347788887654322 2221111 11 122 23555555553 46778
Q ss_pred eCCCc
Q 029743 151 DLDDI 155 (188)
Q Consensus 151 d~~~~ 155 (188)
|.++.
T Consensus 421 dp~~~ 425 (480)
T PHA02790 421 CESSN 425 (480)
T ss_pred cCCCC
Confidence 77654
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.63 E-value=5.1 Score=27.61 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=37.0
Q ss_pred CeEEEEeCCCcEEEEEcCC--CceeeeecccccceEEEEEEeCCCEEEEecC
Q 029743 8 MKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ 57 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 57 (188)
..|+.+...+.|.+|++.. .+.+..+.. -+.|..+.++..|++|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 5565556678899999883 345556653 478999999999999998543
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.61 E-value=6.5 Score=28.78 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=44.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC------CC-ceeeeecc-----cccceEEEEEEeCCC------------EEEEec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR------KN-TVQTRSEF-----SEEELTSVVLMKNGR------------KVVCGS 56 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~~~~ 56 (188)
|+|+|.+.+-++....+...+||.. .. .++-.++. .....+.+.|+.... .++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 5788988777777777889999986 12 22233331 124577888874332 357788
Q ss_pred CCCeEEEEEeC
Q 029743 57 QSGTVLLYSWG 67 (188)
Q Consensus 57 ~d~~i~~~d~~ 67 (188)
++|+|.-|...
T Consensus 108 EdGTisaW~p~ 118 (336)
T TIGR03118 108 EDGTLSGWAPA 118 (336)
T ss_pred CCceEEeecCc
Confidence 99999999853
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.46 E-value=4.3 Score=31.40 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=57.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee----eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
+.||+|.+.||.--.+.+|.+++....+.. ...+.....|....|+.+ .-++.-... -+.+|.+....+.++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhh
Confidence 469999999999999999999998543332 222334556899999876 444444433 36777765545555555
Q ss_pred eeccCCceeE-EeecCCCEE
Q 029743 77 VGLSPNSVDA-LLKLDEDRV 95 (188)
Q Consensus 77 ~~~~~~~v~~-~~~~~~~~l 95 (188)
+. +...|.= ++.++-+.+
T Consensus 150 ks-~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETAVI 168 (657)
T ss_pred hh-cccCccEEEEccccceE
Confidence 55 4443332 245555443
No 462
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.39 E-value=5.9 Score=27.99 Aligned_cols=134 Identities=11% Similarity=0.095 Sum_probs=66.6
Q ss_pred EEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC---CeEEEEEeCC-ccccc-----ceeeeccCCceeEEeec
Q 029743 20 SVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGY-FKDCS-----DRFVGLSPNSVDALLKL 90 (188)
Q Consensus 20 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~-~~~~~-----~~~~~~~~~~v~~~~~~ 90 (188)
.+||+.+++..-.-....-.+.+-.+-+||+.|.+|+.. ..+++++... ...+. ..+.. .+-..+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceECC
Confidence 356666554321111122223344566789999887763 3577777533 11111 11222 22223333468
Q ss_pred CCCEEEEecCCCe-EEEEeccc-Ce-ee--eecc---cCCCccee-EEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 91 DEDRVITGSENGL-ISLVGILP-NR-II--QPIA---EHSEYPIE-SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 91 ~~~~l~~~~~d~~-v~~~d~~~-~~-~~--~~~~---~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
||+.++.|+.... ..+|.... .. .. ..+. .......+ .+...|+|+.++.+..+.. |||..+..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNT 200 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCe
Confidence 9999999887643 44554321 11 11 1111 01010112 4566799999988876654 45665543
No 463
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.33 E-value=7.6 Score=29.21 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=53.3
Q ss_pred cceEEEEEEeCCCEEEEec-----------CCC-eEEEEEeCC-ccc--ccceeeeccCCceeEE-eecCCCEEEEecCC
Q 029743 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKD--CSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~~d~~~-~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (188)
.....|+|.++|+++++.. ..+ .|.+++-.. .+. ....+.. .-.....+ +.++| |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 3467889999999877753 223 666665422 122 2233333 33344666 67777 4444444
Q ss_pred CeEEEEecccC-----e--ee-eecccC---CCcceeEEEeeCCCCEEEEEe
Q 029743 102 GLISLVGILPN-----R--II-QPIAEH---SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 102 ~~v~~~d~~~~-----~--~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 142 (188)
...++.+.... + .+ ..+... .......++|.|||.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 43334344211 1 11 122221 012477899999998766444
No 464
>PRK13684 Ycf48-like protein; Provisional
Probab=89.25 E-value=7.4 Score=28.92 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=56.3
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
...+..+.+.|++.+++++. .|.+..- .+..++............+..+ +.++++.++++. .|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 44678888888876665554 4444321 1122222222222033456676 678888776654 566643223333322
Q ss_pred eecccC---CCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 116 QPIAEH---SEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 116 ~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.....+ ....+..+.+.+++..++ ++.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence 211111 112578889998877555 44566554
No 465
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=88.29 E-value=1.7 Score=20.55 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.9
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeec
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSE 34 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~ 34 (188)
.++.++.+|.|+-+|.++|+.+...+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45666889999999999999887766
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.04 E-value=14 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=32.8
Q ss_pred eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
.||+.++|+.-...|.|.+-+.+..++...+......+...++|..+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 688999999999999999988877666655542221133466666544
No 467
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.74 E-value=3.4 Score=24.14 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=27.9
Q ss_pred cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 99 ~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
..+|.+.-||+.+++....+.+- . -.+.+++++|+.+|+.+-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEEEEEe
Confidence 34567888999888765555544 2 468899999999877654
No 468
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.71 E-value=12 Score=32.08 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=67.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
+..|-..++++| -...+++|++...++++... .-+..|+.+.+ .+..+++|.....+..+-.+.....+..+..
T Consensus 940 Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 456655555554 44789999998776655443 23556777776 5678888888777887777654455555543
Q ss_pred ccCCceeEEeecCCCEEEEecCCCeEEEEec
Q 029743 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
.....+++++.-|...++.+..-|.+.+..+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0223455555556667777777777776654
No 469
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.57 E-value=9.3 Score=28.07 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=32.6
Q ss_pred CCCEEEEecC-----CCeEEEEEeCCcccccceeeec-cCCcee-EEeecCCCEEEEecCCC----eEEEEecccCe
Q 029743 48 NGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGL-SPNSVD-ALLKLDEDRVITGSENG----LISLVGILPNR 113 (188)
Q Consensus 48 ~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~l~~~~~d~----~v~~~d~~~~~ 113 (188)
++++.+.|+. ...+..||+.+. ....+... ...... ++...++++.+.|+.++ .+..||+.+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 5666666664 235777887542 22222110 001111 12345667777777553 35688887654
No 470
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.47 E-value=10 Score=28.47 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=60.5
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeeccc--ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
.++.+..+|.|.-+|..++..+...... ...+..-....+|+ ++.++.++.+..+|.++ +..+..... .. . ..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~-~~-~-~~ 144 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNV-GG-S-PY 144 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEec-CC-C-eE
Confidence 4555577888888898888866543322 13334444444665 77778888777777754 455554443 33 1 11
Q ss_pred Eee---cCCCEEEEecCCCeEEEEecccCeeeeec
Q 029743 87 LLK---LDEDRVITGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 87 ~~~---~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
... .....+...+.++.+.-.+..++..+...
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 111 12233444446777777777777765553
No 471
>PLN02193 nitrile-specifier protein
Probab=87.12 E-value=13 Score=29.16 Aligned_cols=66 Identities=9% Similarity=-0.057 Sum_probs=35.6
Q ss_pred cCCCEEEEecCC----CeEEEEecccCeeeeecc---cCCCcceeEEEeeCCCCEEEEEeCC--------------CcEE
Q 029743 90 LDEDRVITGSEN----GLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRKFLGSISHD--------------SMLK 148 (188)
Q Consensus 90 ~~~~~l~~~~~d----~~v~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~ 148 (188)
-+++.++.++.+ ..+.+||+.+.+-...-. .+......+++ .-+++.++.++.. +.+.
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEE
Confidence 356666666644 458899988765332211 01110112222 2256677777742 2478
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+||+.+..
T Consensus 406 ~~D~~t~~ 413 (470)
T PLN02193 406 ALDTETLQ 413 (470)
T ss_pred EEEcCcCE
Confidence 88887664
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.74 E-value=9.1 Score=27.08 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=62.7
Q ss_pred eecccCeEEEEeCC---CcEEEEEcCC--Cceee-----eecccccceEEEEEEeCCCEEEEecCCC-eEEEEEeCCccc
Q 029743 3 FAADAMKLLGTSGD---GTLSVCNLRK--NTVQT-----RSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKD 71 (188)
Q Consensus 3 ~s~~~~~l~~~~~d---~~i~i~~~~~--~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~ 71 (188)
+-|||++|.+|+.. ..+++++... +.+.. .+. ....--....-|||+.|+.|+... +...|.-.....
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 56899999998762 4577787644 11110 111 122233444567999999988774 344444321111
Q ss_pred ccce---eeec---cCCcee-EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 72 CSDR---FVGL---SPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 72 ~~~~---~~~~---~~~~v~-~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
.... +... .....+ .+ ..|+|++++.+..+. .|||..+.+.++.+..-
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 1111 1100 111122 22 379999999888754 46788777766666543
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.69 E-value=13 Score=28.95 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce--eeeec-----ccccceEEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSE-----FSEEELTSVVLMKNG 49 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 49 (188)
|+|.|||++|++--..|.|++++...+.. +..+. .-......|+++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 57899997777654469999988654422 21121 124668999999873
No 474
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=85.76 E-value=10 Score=32.07 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=50.1
Q ss_pred EEecCCCeEEEEEeCCccccccee-eeccCCceeEE-eecCCCEEEE-ecCCC-----eEEEEeccc-CeeeeecccCCC
Q 029743 53 VCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDAL-LKLDEDRVIT-GSENG-----LISLVGILP-NRIIQPIAEHSE 123 (188)
Q Consensus 53 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~l~~-~~~d~-----~v~~~d~~~-~~~~~~~~~~~~ 123 (188)
+.....+.+.+-|... ...+.+ .. +..++..- |||||++|+. .+..+ .|++-++++ +.-+..+....
T Consensus 323 fv~~~~~~L~~~D~dG--~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~- 398 (912)
T TIGR02171 323 FRNDVTGNLAYIDYTK--GASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN- 398 (912)
T ss_pred EEEcCCCeEEEEecCC--CCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc-
Confidence 3333335788888763 333334 33 66777777 8999999987 44333 488888875 33334444442
Q ss_pred cceeEEEeeCCCCEEE
Q 029743 124 YPIESLALSHDRKFLG 139 (188)
Q Consensus 124 ~~v~~~~~~~~~~~l~ 139 (188)
+.|-.-...++|..++
T Consensus 399 aaiprwrv~e~gdt~i 414 (912)
T TIGR02171 399 AAIPRWRVLENGDTVI 414 (912)
T ss_pred ccccceEecCCCCeEE
Confidence 2566666667776543
No 475
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.62 E-value=13 Score=26.97 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec------CCCeEEEEEeCCcccccceeee----ccCCceeE
Q 029743 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVG----LSPNSVDA 86 (188)
Q Consensus 17 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~----~~~~~v~~ 86 (188)
..|.+||....+=...-.+-.+.|+++.|..+.+.++.|. ....+..||+.. .....+.. .-.+++..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEEE
Confidence 5688999877654444445667899999986666666653 345688888864 23323322 02356666
Q ss_pred E-e-ecCCC-EEEEec-CC--CeEEEEecccC
Q 029743 87 L-L-KLDED-RVITGS-EN--GLISLVGILPN 112 (188)
Q Consensus 87 ~-~-~~~~~-~l~~~~-~d--~~v~~~d~~~~ 112 (188)
+ + ..++. ..+.|. .+ ..|..||=...
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 6 3 44554 443443 22 34666764433
No 476
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=83.60 E-value=2.7 Score=18.36 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=14.6
Q ss_pred eEEEEEEeCCCEEEEecCCCeEEEE
Q 029743 40 LTSVVLMKNGRKVVCGSQSGTVLLY 64 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~~ 64 (188)
...++..++|+.+++-.....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4566666666666665555555543
No 477
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.44 E-value=21 Score=28.44 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=47.6
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCc--------cccc---c-------eeeeccCCceeEE-eecCC---CEEE
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------KDCS---D-------RFVGLSPNSVDAL-LKLDE---DRVI 96 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------~~~~---~-------~~~~~~~~~v~~~-~~~~~---~~l~ 96 (188)
.|..+..++.|..++-++.+|.+.++=.+.. +... + .+.....-.+..+ |+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3567778889999998888886655431110 1111 0 1111001113333 67754 6777
Q ss_pred EecCCCeEEEEecccCeeeeec
Q 029743 97 TGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 97 ~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
.-..|+.|++||+.....+...
T Consensus 185 iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCcEEEEEecCCcchhhcc
Confidence 8888999999999876655443
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.74 E-value=17 Score=26.90 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=62.3
Q ss_pred eEEEEEEeCCCEEEEecCC------CeEEEEEeCCcccccceee-e-------------ccCCceeEE-eecCCCEEEEe
Q 029743 40 LTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCSDRFV-G-------------LSPNSVDAL-LKLDEDRVITG 98 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~-~-------------~~~~~v~~~-~~~~~~~l~~~ 98 (188)
..+|++.+++.++++.-.+ ..|..++.+ +.....+. . .......++ ++|+|+.|+++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 4478887788887777666 677777754 33333321 0 022346677 68999966655
Q ss_pred cC-----CC-----------eEEEEeccc-Cee----eeeccc----CCCcceeEEEeeCCCCEEEEEe-----CCCcEE
Q 029743 99 SE-----NG-----------LISLVGILP-NRI----IQPIAE----HSEYPIESLALSHDRKFLGSIS-----HDSMLK 148 (188)
Q Consensus 99 ~~-----d~-----------~v~~~d~~~-~~~----~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~ 148 (188)
.. |+ .|..||..+ +.. ...+.. .....|..+.+.+++++|+.-- ....++
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r 244 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR 244 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence 32 22 233455544 322 222221 0234689999999998776332 234455
Q ss_pred EEeCC
Q 029743 149 LWDLD 153 (188)
Q Consensus 149 iwd~~ 153 (188)
||.+.
T Consensus 245 i~~v~ 249 (326)
T PF13449_consen 245 IYRVD 249 (326)
T ss_pred EEEEE
Confidence 55443
No 479
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.21 E-value=18 Score=26.83 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=18.3
Q ss_pred CcEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecC
Q 029743 17 GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ 57 (188)
Q Consensus 17 ~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 57 (188)
..+.+||..+.+= +..++ ...........-++++.+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p-~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENP-FLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCC-CCcCCCceEEEECCEEEEEeee
Confidence 4577888776432 22222 1111111122336677777664
No 480
>PRK10115 protease 2; Provisional
Probab=82.11 E-value=28 Score=28.90 Aligned_cols=147 Identities=11% Similarity=0.025 Sum_probs=70.0
Q ss_pred CeeecccCeEEEEeCC------CcEEEEEcCCC--ceeeeecccccceEEEEEEe-CCCEEEEecC---CCeEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGD------GTLSVCNLRKN--TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQ---SGTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d------~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~---d~~i~~~d~~~ 68 (188)
++|++|++.|+....+ ..|+.+++.++ +....+........-..+.+ ++++++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 4688998877766442 36777788776 33334443333333223333 7777655433 35788888543
Q ss_pred cccccceeeeccC-CceeEEeecCCCEEEEecC----CCeEEEEecc-cCeeeeecccC-CCcceeEEEeeCCCCEEEEE
Q 029743 69 FKDCSDRFVGLSP-NSVDALLKLDEDRVITGSE----NGLISLVGIL-PNRIIQPIAEH-SEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 69 ~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~----d~~v~~~d~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 141 (188)
.......+.. +. .....+.+.. ..+...++ ...|...++. .++. ..+..+ .+..+..+.+.. ...+++.
T Consensus 257 ~~~~~~~~~~-~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~ 332 (686)
T PRK10115 257 ADAEPFVFLP-RRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEE 332 (686)
T ss_pred CCCCceEEEE-CCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEE
Confidence 2122222222 22 2222223333 33333332 2234444544 2222 223233 233677788773 3344555
Q ss_pred eCCCcEEEEe
Q 029743 142 SHDSMLKLWD 151 (188)
Q Consensus 142 ~~d~~i~iwd 151 (188)
..++.-+++-
T Consensus 333 ~~~g~~~l~~ 342 (686)
T PRK10115 333 RQRGLTSLRQ 342 (686)
T ss_pred EeCCEEEEEE
Confidence 5566544443
No 481
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.29 E-value=13 Score=27.14 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=0.0
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE-----EEeeCCCCEEEEEeCCCcEEEEe
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-----LALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+.++ ..++|.+|++.-.-..|.+.+.++|+.+..+.+... .-.. .++-.+-+++-....++.|.+||
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC-CcccccCCcEeeccCCEEeccCCCCCEEEEEc
No 482
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.23 E-value=26 Score=27.41 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.4
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
-...+.|+|.|++++|++--..|.|++++..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCC
Confidence 3457899999999888776656899988754
No 483
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=79.59 E-value=9.8 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.8
Q ss_pred ceeEEEeeCCCCEEEEEe-CCCcEEEEeCCC
Q 029743 125 PIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 125 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (188)
..+.+.++|++++|..++ ..+.|++|..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 357899999999887665 668999998753
No 484
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=79.49 E-value=19 Score=26.36 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCEEEEecCCCeEEEEeccc--CeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCccC
Q 029743 91 DEDRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILK 157 (188)
Q Consensus 91 ~~~~l~~~~~d~~v~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 157 (188)
++++++.|+.+|. ++.++.. ++..+.+. . . +|+++...+..+.|++-+ ....++.+++.....
T Consensus 12 ~~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~~-~-~-~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~ 77 (302)
T smart00036 12 DGKWLLVGTEEGL-YVLNISDQPGTLEKLIG-R-R-SVTQIWVLEENNVLLMISGKKPQLYSHPLSALVE 77 (302)
T ss_pred CCcEEEEEeCCce-EEEEcccCCCCeEEecC-c-C-ceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhh
Confidence 3468999999984 4555554 33444333 2 3 799999998877776554 334599999966553
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=78.50 E-value=10 Score=22.14 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEE
Q 029743 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLY 64 (188)
Q Consensus 16 d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~ 64 (188)
+|.+..||..+++....+.+- ...+.+++++++..++.+ .....|.-|
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 567888898887765444432 357899999999866654 333444433
No 486
>PLN02153 epithiospecifier protein
Probab=78.50 E-value=25 Score=26.11 Aligned_cols=54 Identities=6% Similarity=-0.045 Sum_probs=27.1
Q ss_pred CeEEEEecccCeeeee--cc-cCCCcceeEEEeeCCCCEEEEEeCC--------------CcEEEEeCCCcc
Q 029743 102 GLISLVGILPNRIIQP--IA-EHSEYPIESLALSHDRKFLGSISHD--------------SMLKLWDLDDIL 156 (188)
Q Consensus 102 ~~v~~~d~~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 156 (188)
..|.+||+.+.+-... .. .+......+++ ..+++.++.|+.. +.+..||+.+..
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 4588899876543221 10 11110112222 2256666777641 257788887654
No 487
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=78.41 E-value=42 Score=28.77 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=76.4
Q ss_pred eCCCcEEEEEcCCCceeeeecccccceEEEE-EEeCCCE--------EEEecCCCeEEEEEeCCcc--ccccee------
Q 029743 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVV-LMKNGRK--------VVCGSQSGTVLLYSWGYFK--DCSDRF------ 76 (188)
Q Consensus 14 ~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~--------l~~~~~d~~i~~~d~~~~~--~~~~~~------ 76 (188)
+.|+.+.+|+...+...+.+......|..++ +-|..+. |+.+ ....+.++-+.... ..+..+
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~v 177 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLVV 177 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceEE
Confidence 4689999999987765555443333444444 2333322 2222 22234444432110 111111
Q ss_pred eeccCCceeEEe-ecCCCEEEEecCCCeEEEEecccC--------ee-------------e---eecccCCCcceeEEEe
Q 029743 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN--------RI-------------I---QPIAEHSEYPIESLAL 131 (188)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~--------~~-------------~---~~~~~~~~~~v~~~~~ 131 (188)
.. .+..|.|+. +.+|+.+++|..| +-+|.+.-. ++ + ..+..|.+ .|..++.
T Consensus 178 sv-qGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipge-tI~Ql~v 253 (1263)
T COG5308 178 SV-QGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGE-TIKQLAV 253 (1263)
T ss_pred ec-cCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCccc-chhheee
Confidence 12 345678885 4578888888877 556655210 00 0 11122323 6888888
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
......|.+-+....|+.|.+.+..
T Consensus 254 DqsRg~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 254 DQSRGLLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred cccccceeeecccceeeeEeeeccc
Confidence 8777778888888889988876544
No 488
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.38 E-value=46 Score=29.10 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.0
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+++..++++..||.+..||......
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 67789999999999999999998644
No 489
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=78.18 E-value=5.3 Score=18.98 Aligned_cols=21 Identities=14% Similarity=-0.110 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 029743 134 DRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+..++.++.|+.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788888999999999864
No 490
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.99 E-value=0.73 Score=35.61 Aligned_cols=92 Identities=12% Similarity=0.204 Sum_probs=55.2
Q ss_pred eeecccCeE-EEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+|..++..+ +.+-..+.+.+|++.+.... .+. +-...-.-+.|++....++.+...+.+.+++....+..... -.
T Consensus 81 ~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gk- 157 (615)
T KOG2247|consen 81 AWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GK- 157 (615)
T ss_pred hhccccchhhhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-cc-
Confidence 445555444 34455789999998764322 222 22222233779988888888888999999998764333222 22
Q ss_pred cCCceeEE-eecCCCEEE
Q 029743 80 SPNSVDAL-LKLDEDRVI 96 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~ 96 (188)
|...+.++ +.+.+..+.
T Consensus 158 h~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cccceeEEEecccceeee
Confidence 55556666 455554433
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.07 E-value=12 Score=31.10 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=45.8
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCee--eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..++++ -+|.|+-++.+..||.|.+|+.-.... +..... |-..+.|...| |+++..|..+.-|.-..
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~----p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK----PKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC----Cccceeeeccc--eEEEeccchhheeeccC
Confidence 345566 479999999999999999999765443 333222 34567776555 66677787777776554
No 492
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=75.35 E-value=29 Score=25.38 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=39.4
Q ss_pred ccCeEEEEeCCCcEEEEEcCC--CceeeeecccccceEEEEEEeCCCEEEE-ecCCCeEEEEEeC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWG 67 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~ 67 (188)
++++|+.|+.+| +++.++.. +...+.+ +...|+++...+.-+.|++ ++....++.+++.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 346899999888 44555554 3333333 4668999999886666554 4445569999984
No 493
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=74.48 E-value=29 Score=24.86 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=36.1
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEE----EEeCCCEEEEecCCCeEEEE
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV----LMKNGRKVVCGSQSGTVLLY 64 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~d~~i~~~ 64 (188)
..|+.|..++.|+|.|.+.-..+....-..-++ .+. |..-.-.|++++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 458899999999999987766555554332333 222 21123467788889887664
No 494
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=73.03 E-value=12 Score=29.75 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.9
Q ss_pred cccceEEEEEEeCCCEEEEe
Q 029743 36 SEEELTSVVLMKNGRKVVCG 55 (188)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~ 55 (188)
....++.++|+||++.|++.
T Consensus 500 ~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCcccccceECCCCCEEEEE
Confidence 45678999999999888763
No 495
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=72.97 E-value=34 Score=24.97 Aligned_cols=117 Identities=7% Similarity=-0.072 Sum_probs=69.4
Q ss_pred cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-cccceeeeccCCceeEEe-ecCCCEEEEecCCCeEEEEecccCee-
Q 029743 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI- 114 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~- 114 (188)
.....|+..|+|..-++.-.+..|-..|..... +.+-.-.. .....+.++ +|.|+..++-...+.+..+|.....-
T Consensus 189 ~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~-~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 189 GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNA-LKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI 267 (353)
T ss_pred CCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCc-ccccccccccCccCcEEEeccCCceeeEeCcccccce
Confidence 345778888888877776666666666654321 11111122 233455664 78899999988888999998765441
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
...+.+... .-.++.....++.-.+--..+.|.-||-++..
T Consensus 268 eypLPgs~a-rpys~rVD~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 268 EYPLPGSKA-RPYSMRVDRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred eeeCCCCCC-CcceeeeccCCcEEeeccccCceeecCcccce
Confidence 223333322 45566666556555544455666666666543
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.88 E-value=36 Score=25.23 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=58.5
Q ss_pred ccceEEEEEEeCCCEEEEecCCCe------EEEEEeCCcccccc--------eeeeccCC-------ceeEE-eecCCCE
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGT------VLLYSWGYFKDCSD--------RFVGLSPN-------SVDAL-LKLDEDR 94 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~------i~~~d~~~~~~~~~--------~~~~~~~~-------~v~~~-~~~~~~~ 94 (188)
-+.++.+.+.+++..+++.+.++. +..+++........ .+...... ...++ +.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999876666666666666 55555543111100 01110111 22345 4567777
Q ss_pred EEEecCC------CeEEEEecccCeeeeecc--c------------CCCcceeEEEeeCCCCEEEEEe
Q 029743 95 VITGSEN------GLISLVGILPNRIIQPIA--E------------HSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 95 l~~~~~d------~~v~~~d~~~~~~~~~~~--~------------~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+++.=.+ ..|+.++.. |.....+. . .......+|+++|+|+.|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 7766666 678888865 55433321 0 1122578999999999666554
No 497
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.07 E-value=23 Score=22.58 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=60.1
Q ss_pred EEEeCCCEEEEecCCCeEEEEEeCCc-------ccccceeeeccCCceeEE-e---ec--CCCEEEEecCCCeEEEEecc
Q 029743 44 VLMKNGRKVVCGSQSGTVLLYSWGYF-------KDCSDRFVGLSPNSVDAL-L---KL--DEDRVITGSENGLISLVGIL 110 (188)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~v~~~-~---~~--~~~~l~~~~~d~~v~~~d~~ 110 (188)
.|......|+.++.-+.|.+.+.... ...++.+. -...++++ . .| ....|+.|+.. .+..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 34444456777777778888876432 12333343 35567777 3 22 34466776665 57799998
Q ss_pred cCeeeeecccCCCcceeEEEeeC---CCCEEEEEeCCCcEEEEeCCC
Q 029743 111 PNRIIQPIAEHSEYPIESLALSH---DRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 111 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...-+..-..+ + .|+++.+-. ...-|+..+.+..|.=||.+.
T Consensus 82 ~N~d~Fyke~~-D-Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKEVP-D-GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhhCc-c-ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 77665544444 4 477777632 122344444466666666543
No 498
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=71.67 E-value=57 Score=27.00 Aligned_cols=150 Identities=17% Similarity=0.068 Sum_probs=74.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceee--eec-ccccceEEEEEEe------CCCEEEEecC-C---CeEEEEEeCC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSE-FSEEELTSVVLMK------NGRKVVCGSQ-S---GTVLLYSWGY 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~-~~~~~v~~~~~~~------~~~~l~~~~~-d---~~i~~~d~~~ 68 (188)
.|.++++.+++...+|.|.+|+...+.... .+. .+...+.--.|-+ ...++++-+. . -..+++.+..
T Consensus 136 k~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~ 215 (670)
T PF10395_consen 136 KFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSN 215 (670)
T ss_pred EEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEecc
Confidence 466788999999999999999993322111 111 1111111112222 1234444333 2 2577777722
Q ss_pred cccccceee---eccCCceeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeecccCC---C--cceeEEE-eeCCCCEE
Q 029743 69 FKDCSDRFV---GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---E--YPIESLA-LSHDRKFL 138 (188)
Q Consensus 69 ~~~~~~~~~---~~~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~---~--~~v~~~~-~~~~~~~l 138 (188)
....+..+. -.......+.| -..|.+... .++.|.+|++...+...++.-.. . ..+.++. .+ ..+.|
T Consensus 216 ~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s-~nRvL 292 (670)
T PF10395_consen 216 ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS-PNRVL 292 (670)
T ss_pred CCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC-CCeEE
Confidence 222222222 10122233334 335554333 66789999997776555443220 1 0222332 22 22344
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 029743 139 GSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~ 156 (188)
+ +.++.|++.|+.-..
T Consensus 293 L--s~~nkIyLld~~~~s 308 (670)
T PF10395_consen 293 L--SVNNKIYLLDLKFES 308 (670)
T ss_pred E--EcCCEEEEEeehhhh
Confidence 3 347789999987543
No 499
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=70.34 E-value=19 Score=28.74 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=22.2
Q ss_pred cCeeeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 111 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
.++..+-+.+..++.++.++|+||++.|...
T Consensus 489 ~g~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 489 TGELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ccceeeeccCCCCcccccceECCCCCEEEEE
Confidence 3444455556666689999999999987653
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=69.28 E-value=69 Score=27.05 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=42.8
Q ss_pred ceeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeec----ccC--------C--Cc----ceeEEEeeCCCCEEEEEeC
Q 029743 83 SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI----AEH--------S--EY----PIESLALSHDRKFLGSISH 143 (188)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~----~~~--------~--~~----~v~~~~~~~~~~~l~~~~~ 143 (188)
.|.++. ..-+.+++....||.|.++|..+.+.+... ... . .+ ++..++|+|++..++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 344553 335667888899999999997665433222 000 0 01 2335789999998888888
Q ss_pred CCcEE
Q 029743 144 DSMLK 148 (188)
Q Consensus 144 d~~i~ 148 (188)
++.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 88866
Done!