BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029744
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26
PE=1 SV=1
Length = 216
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 130/194 (67%), Gaps = 37/194 (19%)
Query: 32 NYPHKLPKSTNLPLVHHQNQ------ICSSSYSMDAPPEGYRRNVGICLINSSKKIFAAS 85
NYP K K ++LP +H + SM++PPEGYRRNVG+CL+NSSKKIF AS
Sbjct: 23 NYPSKPIKFSSLPFLHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCLMNSSKKIFTAS 82
Query: 86 RLDIPDSWQMPQ-------------------------------VPYWLTYDFPPEVREKL 114
RLDIP +WQMPQ P+W+TYDFPP+VREKL
Sbjct: 83 RLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWITYDFPPDVREKL 142
Query: 115 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKP 174
K +WG DWKGQAQKWFLLKFTGK+EEINLLGD +EKPEFGEW W SP+Q++E AV+FKKP
Sbjct: 143 KVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQVVENAVEFKKP 202
Query: 175 VYKEVFTVFTPHLQ 188
VYKEV + F HLQ
Sbjct: 203 VYKEVMSAFASHLQ 216
>sp|Q9FNH4|NUD27_ARATH Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27
PE=1 SV=1
Length = 227
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 109/175 (62%), Gaps = 31/175 (17%)
Query: 44 PLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ------ 97
PLV + S + ++++PP GYR+NVGICL++ +KIF AS++ IPD+WQMPQ
Sbjct: 40 PLVVLSVALSSPARTVESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEG 99
Query: 98 -------------------------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLL 132
+P WLTYDFP EV++KL +W +KGQAQKWFL
Sbjct: 100 EDLRNAAFRELREETGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLF 159
Query: 133 KFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
KFTGKEEEINLLGD + KPEF W WM PEQ++E AV FK+PVY+ V F P+
Sbjct: 160 KFTGKEEEINLLGDGTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPYF 214
>sp|Q9C6Z2|NUD25_ARATH Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1
Length = 175
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 95/163 (58%), Gaps = 34/163 (20%)
Query: 59 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ--------------------- 97
M+ P GYR NVG+CLINS +F ASRL++P +WQMPQ
Sbjct: 1 MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60
Query: 98 ----------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEE--EINLLG 145
VP WLTYDFPP V+ K+ WGG+W GQAQKW+L++ E+ EINL
Sbjct: 61 GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120
Query: 146 DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
++++ EF EWKW PE+++E+AVD+K+P Y+EV F L
Sbjct: 121 NEADS-EFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLN 162
>sp|Q2RV14|RPPH_RHORT RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rppH PE=3 SV=1
Length = 165
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 37/147 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQ---------------------------- 97
YR+ VGI LIN+ ++F A RLD P++WQMPQ
Sbjct: 14 YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGTRNALL 73
Query: 98 ---VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFG 154
WL YD P E+R +L WGG ++GQ QKWF +FTG++ +INL + PEF
Sbjct: 74 LGETAGWLGYDLPEELRGRL---WGGRFQGQRQKWFAFRFTGQDADINL---ATAHPEFD 127
Query: 155 EWKWMSPEQILERAVDFKKPVYKEVFT 181
W+W+ + ++ V FK+PVY++V
Sbjct: 128 AWRWVDVDTLVALIVPFKRPVYEQVVA 154
>sp|B9KN59|RPPH_RHOSK RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=rppH PE=3 SV=1
Length = 162
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 77/156 (49%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQ--------------------------- 97
YR VGI LIN IFA R+D P +WQMPQ
Sbjct: 12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
P W+TYD PPE+ L WGG ++GQ QKWFL ++ G +EE+ + D +
Sbjct: 72 VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIGTDHA--- 125
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
EF W+W+ E+++ V FK+ VY+EV F PHL
Sbjct: 126 EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161
>sp|Q3IZC1|RPPH_RHOS4 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1
Length = 162
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 77/156 (49%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQ--------------------------- 97
YR VGI LIN IFA R+D P +WQMPQ
Sbjct: 12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
P W+TYD PPE+ L WGG ++GQ QKWFL ++ G +EE+ + D +
Sbjct: 72 VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIGTDHA--- 125
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
EF W+W+ E+++ V FK+ VY+EV F PHL
Sbjct: 126 EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161
>sp|A3PMX6|RPPH_RHOS1 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rppH PE=3 SV=1
Length = 162
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQ--------------------------- 97
YR VGI LIN IFA R+D P +WQMPQ
Sbjct: 12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
P W+TYD PPE+ L WGG ++GQ QKWFL ++ G ++E+ + D +E
Sbjct: 72 VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDEVGIGTDHAE-- 126
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
F W+W+ E+++ V FK+ VY+EV F PHL
Sbjct: 127 -FSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161
>sp|A4WWV6|RPPH_RHOS5 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rppH PE=3 SV=1
Length = 162
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQ--------------------------- 97
YR VGI LIN IFA R+D P +WQMPQ
Sbjct: 12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPEDL 71
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
P W+TYD PP++ L WGG ++GQ QKWFL ++ G +E+I G +E
Sbjct: 72 VEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWFLFRYLGTDEQI---GIATEHA 125
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
EF W+W+ E+++ V FK+PVY+ V +F HL
Sbjct: 126 EFSCWRWIGAEEMVASIVPFKRPVYERVVAMFREHL 161
>sp|A8LKJ8|RPPH_DINSH RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DFL 12)
GN=rppH PE=3 SV=1
Length = 160
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 42/157 (26%)
Query: 66 YRRNVGICLINSSKKIFAASRLD--IPDSWQMPQ-------------------------- 97
YR+ VG+ L + + ++F R D +P +WQMPQ
Sbjct: 11 YRKCVGVVLWDGAGRVFTGQRYDSELP-AWQMPQGGIEDGEDARTAALRELVEETGVAVE 69
Query: 98 -------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 150
P W+ YD PPE+ ++ W G +KGQAQ+W L+KF G + +IN+ +++
Sbjct: 70 KVEVLAETPDWIKYDLPPEIVPRI---WKGRYKGQAQRWVLMKFLGSDADINI---ETKH 123
Query: 151 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
PEF EW+W+ P +L+ V FK+ VY++VF F+ L
Sbjct: 124 PEFSEWRWLEPASVLDSIVPFKRDVYEQVFDAFSDWL 160
>sp|Q9RH11|RPPH_ZYMMO RNA pyrophosphohydrolase OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rppH PE=3 SV=1
Length = 155
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDI-PDSWQMPQ--------------------------- 97
YR VGI L+N +FAA R D+ ++WQMPQ
Sbjct: 6 YRSGVGIMLLNKDNLVFAACRNDMKEEAWQMPQGGLEAKETPEVGVLRELEEETGIPPRM 65
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
WLTYDFP +++ + ++GQ Q WFL ++ G++E+IN+ ++KP
Sbjct: 66 VAIISHTKEWLTYDFPADLQASF---FKNKYRGQRQLWFLARYLGRDEDINI---NTDKP 119
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
EF WKW+ P+Q+ + V FKKP+Y+++ + F+ L
Sbjct: 120 EFRAWKWVEPKQLPDLIVAFKKPLYEKILSEFSASL 155
>sp|Q5LMH8|RPPH_RUEPO RNA pyrophosphohydrolase OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rppH PE=3 SV=1
Length = 161
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDI-PDSWQMPQ--------------------------- 97
YR VG+ L+N +F R+D D+WQMPQ
Sbjct: 11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADL 70
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
WL YD P ++ ++ W G ++GQ QKW+L +F G++++I+L ++ P
Sbjct: 71 VEMVAETDGWLPYDLPHDLVPRI---WKGRYRGQEQKWYLFRFLGRDDQIDL---ETGHP 124
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
EF WKW P++++ V FK+ VY+ V F PHL
Sbjct: 125 EFSRWKWQDPDRLVAEIVPFKRDVYERVVAAFAPHL 160
>sp|Q92IV0|RPPH_RICCN RNA pyrophosphohydrolase OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rppH PE=3 SV=1
Length = 161
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VP---------- 99
SS +D P YR VG+ ++N++ IF R+D S WQMPQ VP
Sbjct: 4 SSKKHLDLP---YRPGVGMMILNANNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 100 ------------------YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
+W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKFWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|B3CSR8|RPPH_ORITI RNA pyrophosphohydrolase OS=Orientia tsutsugamushi (strain Ikeda)
GN=rppH PE=3 SV=1
Length = 161
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 32/151 (21%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPDS-WQMPQVPYWLTYDFPPEVREKLKHQ------- 117
YR VG+ +IN K+IF R+D WQMPQ L + V ++K +
Sbjct: 13 YRIGVGMVIINQKKEIFTGQRIDSARQYWQMPQGGIILGETYSKAVLREMKEEIGCNKAI 72
Query: 118 ---------------------WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEW 156
W ++KGQ QKWFL+KF GK+E+IN+ + PEF +W
Sbjct: 73 IMAESRNWYSYHIPKFLVHKLWNSNFKGQKQKWFLIKFLGKDEDINI---NTIYPEFSQW 129
Query: 157 KWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
KWM+ Q++ A+ FK+ +YK V F L
Sbjct: 130 KWMNSNQLINNALPFKRKLYKAVINEFHIFL 160
>sp|A5CD16|RPPH_ORITB RNA pyrophosphohydrolase OS=Orientia tsutsugamushi (strain Boryong)
GN=rppH PE=3 SV=1
Length = 161
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 32/151 (21%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPDS-WQMPQVPYWLTYDFPPEVREKLKHQ------- 117
YR VG+ +IN K+IF R+D WQMPQ L + V ++K +
Sbjct: 13 YRIGVGMVIINQKKEIFTGQRIDSARQYWQMPQGGIILGETYSKAVLREMKEEIGCNKAI 72
Query: 118 ---------------------WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEW 156
W ++KGQ QKWFL+KF GK+E+IN+ + PEF +W
Sbjct: 73 IMAESRNWYSYHIPKFLVHKLWNSNFKGQKQKWFLIKFLGKDEDINI---NTIYPEFSQW 129
Query: 157 KWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
KWM+ Q++ A+ FK+ +YK V F L
Sbjct: 130 KWMNSNQLINNALPFKRKLYKAVINEFHIFL 160
>sp|C4K0V5|RPPH_RICPU RNA pyrophosphohydrolase OS=Rickettsia peacockii (strain Rustic)
GN=rppH PE=3 SV=1
Length = 161
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VP---------- 99
SS +D P YR VG+ ++N+ IF R+D S WQMPQ VP
Sbjct: 4 SSKKHLDLP---YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 100 ------------------YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
+W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKFWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|Q2N9Y3|RPPH_ERYLH RNA pyrophosphohydrolase OS=Erythrobacter litoralis (strain
HTCC2594) GN=rppH PE=3 SV=1
Length = 164
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 40/164 (24%)
Query: 55 SSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPD--SWQMPQ--------------- 97
+S S D YR+ G+ L N +FAA R+D + +WQMPQ
Sbjct: 2 ASGSADHEDLRYRQCAGVMLANREGLVFAAQRIDSKNLGAWQMPQGGIDPGETQQEAAMR 61
Query: 98 ------------------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEE 139
+PY + YD P E++ KL WGG ++GQ Q WFL +FTG +
Sbjct: 62 ELEEETGVSADLADVIARMPYPVRYDLPEELQGKL---WGGRYRGQEQHWFLARFTGTDA 118
Query: 140 EINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 183
+I++ PEF EWKW+ P+++ V FK+ VY+ V F
Sbjct: 119 DIDIAAHNP--PEFSEWKWVEPDELPRLIVPFKREVYRAVVKEF 160
>sp|Q5FU29|RPPH_GLUOX RNA pyrophosphohydrolase OS=Gluconobacter oxydans (strain 621H)
GN=rppH PE=3 SV=1
Length = 170
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 37/147 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQVPY------------------------ 100
YR NVGI L N K+F A R D+P D WQ PQ
Sbjct: 9 YRPNVGIALFNRDGKLFIARRTDLPGDVWQCPQGGIDEGETPQVAALREMGEEIGTQNAR 68
Query: 101 -------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEF 153
WL+YD P ++ + GG ++GQ QKWF++ + G++ +I L D + PEF
Sbjct: 69 ILAERSGWLSYDLPSDL---IGKALGGRFRGQTQKWFVMGYEGQDSDIRL--DLQDPPEF 123
Query: 154 GEWKWMSPEQILERAVDFKKPVYKEVF 180
W+W+ P+ +L R + FKK +Y E+
Sbjct: 124 DAWEWVDPQAVLNRNLGFKKALYAELI 150
>sp|Q2G7H8|RPPH_NOVAD RNA pyrophosphohydrolase OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=rppH PE=3 SV=1
Length = 161
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 40/153 (26%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPD--SWQMPQ----------------------VPYW 101
YR VG+ L+NS ++F R+D D +WQMPQ V
Sbjct: 10 YRPCVGVMLVNSQGRVFVGRRIDDKDGVAWQMPQGGIDDGEELHPAALRELSEETGVAAE 69
Query: 102 LT-----------YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 150
L YD P E+ KL WGG ++GQ QKW LL+F G++ +I L D +
Sbjct: 70 LVTIIAESREEHLYDLPDELIGKL---WGGQYRGQRQKWLLLRFAGEDTDIRL--DAHDP 124
Query: 151 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 183
EF EW+W+ PEQ+ + V FK+ VY++V F
Sbjct: 125 AEFSEWRWVEPEQLPDLIVPFKRRVYRQVVDEF 157
>sp|C3PMT3|RPPH_RICAE RNA pyrophosphohydrolase OS=Rickettsia africae (strain ESF-5)
GN=rppH PE=3 SV=1
Length = 161
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VP---------- 99
SS D P YR VG+ ++N+ IF R+D S WQMPQ VP
Sbjct: 4 SSKKHFDLP---YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 100 ------------------YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
+W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKFWYSYDVPSFLIPKL---WNGNFRGQQQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|A8GMN4|RPPH_RICAH RNA pyrophosphohydrolase OS=Rickettsia akari (strain Hartford)
GN=rppH PE=3 SV=1
Length = 161
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIP-DSWQMPQ---VPY--------- 100
SS +D P YR VG+ ++N+ IF R+D +WQMPQ VP
Sbjct: 4 SSKKHLDLP---YRLGVGMMILNADNHIFVGKRIDTKLSAWQMPQGGIVPGETPSIAAMR 60
Query: 101 -------------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKCWYSYDVPSLLIPKL---WNGNFRGQKQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFKSLIQ 161
>sp|A5FWY8|RPPH_ACICJ RNA pyrophosphohydrolase OS=Acidiphilium cryptum (strain JF-5)
GN=rppH PE=3 SV=1
Length = 164
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 41/154 (26%)
Query: 66 YRRNVGICLINSSKKIFAASRLDI-PDS---WQMPQ------------------------ 97
YR NVG L + + KI A R D+ PD+ WQ+PQ
Sbjct: 9 YRSNVGAALFSRAGKILVARRADLGPDAAYQWQLPQGGIDGDEDPAAAVLRELDEEIGTT 68
Query: 98 -------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 150
+P WL+YDFPP+V K +G +GQ Q+WF L+F G ++ I L D
Sbjct: 69 AVELLGEIPEWLSYDFPPDVVAK----FGARHRGQRQRWFALRFLGTDDMIRL--DAHAH 122
Query: 151 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
PEF EW+W I AV FK+P+Y+ + F
Sbjct: 123 PEFDEWRWTELSSIPALAVPFKRPIYERLARDFA 156
>sp|Q1RHV9|RPPH_RICBR RNA pyrophosphohydrolase OS=Rickettsia bellii (strain RML369-C)
GN=rppH PE=3 SV=1
Length = 161
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 38/155 (24%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VPY--------------------- 100
YR VG+ ++N+ KIF R+D S WQMPQ VP
Sbjct: 13 YRPGVGMMILNADNKIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSSKGY 72
Query: 101 -------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEF 153
W +YD P + KL W G+++GQ Q+WFL++FTG E+IN+ + PEF
Sbjct: 73 IIAESKCWYSYDVPSFLIPKL---WDGNFRGQKQRWFLIRFTGTNEDINI---NTLNPEF 126
Query: 154 GEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
EW+W S +++L + FK+ +Y+ V F +Q
Sbjct: 127 DEWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|A8GW83|RPPH_RICB8 RNA pyrophosphohydrolase OS=Rickettsia bellii (strain OSU 85-389)
GN=rppH PE=3 SV=1
Length = 161
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 38/155 (24%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VPY--------------------- 100
YR VG+ ++N+ KIF R+D S WQMPQ VP
Sbjct: 13 YRPGVGMMILNADNKIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSSKGY 72
Query: 101 -------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEF 153
W +YD P + KL W G+++GQ Q+WFL++FTG E+IN+ + PEF
Sbjct: 73 IIAESKCWYSYDVPSFLIPKL---WDGNFRGQKQRWFLIRFTGTNEDINI---NTLNPEF 126
Query: 154 GEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
EW+W S +++L + FK+ +Y+ V F +Q
Sbjct: 127 DEWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|A8GRA7|RPPH_RICRS RNA pyrophosphohydrolase OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rppH PE=3 SV=1
Length = 161
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VPY--------- 100
SS +D P YR VG+ ++N+ IF R+D S WQMPQ VP
Sbjct: 4 SSKKHLDLP---YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 101 -------------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|B0BWQ7|RPPH_RICRO RNA pyrophosphohydrolase OS=Rickettsia rickettsii (strain Iowa)
GN=rppH PE=3 SV=1
Length = 161
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VPY--------- 100
SS +D P YR VG+ ++N+ IF R+D S WQMPQ VP
Sbjct: 4 SSKKHLDLP---YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 101 -------------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|Q4UKM5|RPPH_RICFE RNA pyrophosphohydrolase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rppH PE=3 SV=1
Length = 161
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VPY--------- 100
SS +D P YR VG+ ++N+ IF R+D S WQMPQ VP
Sbjct: 4 SSKKHLDLP---YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 101 -------------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|Q9ZDT9|RPPH_RICPR RNA pyrophosphohydrolase OS=Rickettsia prowazekii (strain Madrid E)
GN=rppH PE=1 SV=1
Length = 161
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIP-DSWQMPQ---VPY--------- 100
SS+ +D P YR VG+ ++N+ +IF R+D SWQMPQ VP
Sbjct: 4 SSNKYLDLP---YRPGVGMMILNADNQIFVGKRIDTKISSWQMPQGGIVPGETPSIAAMR 60
Query: 101 -------------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
W +YD P + KL W G+++GQ Q+WFL++FTG ++I
Sbjct: 61 EMLEEIGSNKGYIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNKDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---HTSNPEFDQWRWTSLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|A1B502|RPPH_PARDP RNA pyrophosphohydrolase OS=Paracoccus denitrificans (strain Pd
1222) GN=rppH PE=3 SV=1
Length = 163
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 70/152 (46%), Gaps = 40/152 (26%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPD-SWQMPQ--------------------------- 97
YR G+ LIN +FA R+D P +WQMPQ
Sbjct: 13 YRPCAGVVLINPVGLVFAGQRIDNPGPAWQMPQGGIDRGESPREAALRELVEETGVTPDL 72
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
P W+TYD PPE+ K+ W G + GQ QKWF ++F G++ + + +E P
Sbjct: 73 VDVLAETPGWVTYDLPPELLGKV---WKGRYGGQKQKWFAMRFLGEDSAVRI---ATEHP 126
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 183
EF W+WM +++ V FK+ VY V + F
Sbjct: 127 EFERWQWMRAADLIDGIVPFKRDVYARVLSDF 158
>sp|B3CM46|RPPH_WOLPP RNA pyrophosphohydrolase OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=rppH PE=3 SV=1
Length = 162
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 36/161 (22%)
Query: 59 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQVPY------------------ 100
M + + YR VGI L N IF R D WQMPQ
Sbjct: 1 MISEEKEYRPCVGIMLFNKQGNIFIGKRFDSDSYWQMPQGGVDEGEELEQAALRELLEEV 60
Query: 101 -------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK 147
W+ Y+ P EV + W G + GQ Q+WFL+KF GK+++IN+ +
Sbjct: 61 GTDEAEVVAQNKEWIYYNLPEEV---IPICWNGRYSGQKQRWFLMKFCGKDKDINI--NY 115
Query: 148 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
++ PEF EW+W + + ++ A+ FKK VYK+V F+ ++
Sbjct: 116 TDHPEFKEWRWQNVDDLVASAIPFKKEVYKKVIEEFSSIIK 156
>sp|Q68XD3|RPPH_RICTY RNA pyrophosphohydrolase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rppH PE=3 SV=1
Length = 161
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VPY--------- 100
SS+ +D P YR VG+ ++N+ +IF R+D S WQMPQ VP
Sbjct: 4 SSNKYLDLP---YRPGVGMMILNADNQIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 101 -------------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
W +YD P + KL W G+++GQ Q+WFL++FTG ++I
Sbjct: 61 EMLEEIGSNKGYIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNKDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S +++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---HTSNPEFDQWRWTSLDELLSIIIPFKRKLYQAVVKEFESLIQ 161
>sp|A8EXY5|RPPH_RICCK RNA pyrophosphohydrolase OS=Rickettsia canadensis (strain McKiel)
GN=rppH PE=3 SV=1
Length = 161
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 41/167 (24%)
Query: 54 SSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS-WQMPQ---VPY--------- 100
+S +D P YR VG+ ++N+ IF R+D S WQMPQ VP
Sbjct: 4 ASKKHLDLP---YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMR 60
Query: 101 -------------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
W +YD P + KL W G+++GQ Q+WFL++FTG E+I
Sbjct: 61 EMLEEIGSDKGYIIAESKCWYSYDLPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDI 117
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
N+ + PEF +W+W S ++L + FK+ +Y+ V F +Q
Sbjct: 118 NI---NTSNPEFDQWRWASLNELLSIIIPFKRKLYQAVVKEFDSLIQ 161
>sp|A9H3A6|RPPH_GLUDA RNA pyrophosphohydrolase OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rppH PE=3 SV=1
Length = 167
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 71/164 (43%), Gaps = 44/164 (26%)
Query: 60 DAPPEGYRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQV------------- 98
DA YRRNVG L N+ +I R D P + WQ PQ
Sbjct: 3 DAADLPYRRNVGAMLFNAQGRILIGRRTDQPGAGGPLDGGVWQCPQGGIDADEDPEEAVL 62
Query: 99 ------------------PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEE 140
P WLTYD P + + GG ++GQ QKWF L+FTG++ +
Sbjct: 63 RELREEIGTDRAVIMGARPDWLTYDLPAAL---IGRALGGRYRGQTQKWFALRFTGQDSD 119
Query: 141 INLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
I L D + PEF W+W+ + ER V FK+ +Y+ + F
Sbjct: 120 IRL--DDQQPPEFDAWQWIDLPSLPERNVGFKRDIYRTLVRDFA 161
>sp|Q5GT39|RPPH_WOLTR RNA pyrophosphohydrolase OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rppH PE=3 SV=1
Length = 161
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 36/161 (22%)
Query: 59 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQVPY------------------ 100
M + YR VGI L N +F R D WQMPQ
Sbjct: 1 MVEQKDKYRPCVGIMLFNKQGHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEV 60
Query: 101 -------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK 147
W+ Y+ P EV + W G + GQ Q+WFL+KF G+ ++IN+ +
Sbjct: 61 GTDKAKIIAKNKDWIYYNLPEEV---IPTCWNGRYSGQKQRWFLMKFYGEGKDINI--NY 115
Query: 148 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
++ PEF EW+W S + ++ A+ FKK VYK V F+ ++
Sbjct: 116 TDHPEFKEWRWQSVDNLVAGAIPFKKEVYKTVIEEFSSQIK 156
>sp|Q16BL5|RPPH_ROSDO RNA pyrophosphohydrolase OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rppH PE=3 SV=1
Length = 160
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASRLDI-PDSWQMPQ--------------------------- 97
YR VG+ L+N ++F R D +WQMPQ
Sbjct: 11 YRPCVGVMLMNGQGEVFVGQRRDNNVAAWQMPQGGVEKGEDPRAAALRELWEETGVNPEL 70
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
WL YD P ++ KL W G ++GQ QKWFL++F G + +IN+ +E P
Sbjct: 71 AEVVAETEDWLPYDLPYDLVPKL---WKGRYRGQEQKWFLMRFHGADSDINI---ATEHP 124
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
EF +W+W+ ++E V FK+ VY V F HL
Sbjct: 125 EFSQWRWLPAADLVENIVPFKRDVYVAVLDAFEAHL 160
>sp|Q4FP40|RPPH_PELUB RNA pyrophosphohydrolase OS=Pelagibacter ubique (strain HTCC1062)
GN=rppH PE=3 SV=1
Length = 158
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 32/142 (22%)
Query: 67 RRNVGICLINSSKKIFAASRLDIPDS-WQMPQVPYWLTYDFPPEVREKLKHQ-------- 117
R VGI ++N K+F A R+D + WQMPQ D+ +L+ +
Sbjct: 11 RNGVGIVVLNKDNKVFVAKRIDNQKNFWQMPQGGVDKGEDYLTAAYRELEEETSIKNVEL 70
Query: 118 --------------------WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWK 157
W G ++GQ QKWF+++F G++ EI++ K++ PEF EWK
Sbjct: 71 IKECDGLISYELPKNLLGIIWKGKYRGQEQKWFIMRFLGQDNEIDI---KTKHPEFSEWK 127
Query: 158 WMSPEQILERAVDFKKPVYKEV 179
W+ E I + VDFK VYK+V
Sbjct: 128 WIDLENITDLVVDFKLHVYKDV 149
>sp|A8HRT0|RPPH_AZOC5 RNA pyrophosphohydrolase OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rppH PE=3 SV=1
Length = 168
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 42/157 (26%)
Query: 66 YRRNVGICLINSSKKIFAASRLDIPD------SWQMPQ---------------------- 97
YR VG+ + N + ++F RL P+ SWQMPQ
Sbjct: 9 YRPCVGLAIFNRAGQVFLGQRLSGPEHVDATHSWQMPQGGIDKGEEPYEAALRELYEETS 68
Query: 98 ---------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL--GD 146
V WL+YD P V W G ++GQ QKWF L+FTG E EI++L G
Sbjct: 69 IRSVVKLGEVEDWLSYDLPGRV---AGEAWKGKYRGQTQKWFALRFTGDEGEIDILKPGG 125
Query: 147 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 183
+ K EF W+W + ++ E + FK+ VY+ V F
Sbjct: 126 GAHKAEFCNWRWDALDRAAELVIPFKRQVYERVAREF 162
>sp|C0R4X8|RPPH_WOLWR RNA pyrophosphohydrolase OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=rppH PE=3 SV=1
Length = 162
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 36/161 (22%)
Query: 59 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQVPY------------------ 100
M + YR VGI L N F R D WQMPQ
Sbjct: 1 MVEQKDKYRPCVGIMLFNRQGHAFIGKRFDSDSYWQMPQGGVDDGEELEQAALRELLEEV 60
Query: 101 -------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK 147
W+ Y+ P EV + W G + GQ Q+WFL+KF G++E+I++ +
Sbjct: 61 GTNKVKVITKSKDWIYYNLPEEV---IPICWNGKYSGQKQRWFLMKFCGEDEDIDI--NY 115
Query: 148 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
+ PEF EW+W + ++ A+ FKK VYK V F+ ++
Sbjct: 116 TGHPEFKEWRWQGIDSLVASAISFKKEVYKTVIEEFSSIIK 156
>sp|Q13DN7|RPPH_RHOPS RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
BisB5) GN=rppH PE=3 SV=1
Length = 167
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 67/156 (42%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQ---------------------- 97
YR VG+ LIN +F R +D WQMPQ
Sbjct: 9 YRTCVGMMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETN 68
Query: 98 ---------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKS 148
VP WL YD P R W G ++GQ QKWF ++FTG + EI++
Sbjct: 69 VRSVEKIGEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFAVRFTGADSEIDVGAPGG 125
Query: 149 EKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
KPEF W+W + + + V FK+PVY+ V F+
Sbjct: 126 HKPEFTGWRWEPMQNLPDLIVPFKRPVYERVVKEFS 161
>sp|Q2J3I9|RPPH_RHOP2 RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
HaA2) GN=rppH PE=3 SV=1
Length = 167
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 66 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQ---------------------- 97
YR VG+ LIN + +F R +D WQMPQ
Sbjct: 9 YRTCVGMMLINRAGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETN 68
Query: 98 ---------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKS 148
VP WL YD P R W G ++GQ QKWF ++FTG++ EI+++
Sbjct: 69 VRSVEKIAEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFAIRFTGQDSEIDIIAPPG 125
Query: 149 EKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
K EF W+W + + V FK+PVY+ V F+
Sbjct: 126 HKSEFTSWRWEPMLNLPDLIVPFKRPVYERVVKEFS 161
>sp|A1AX38|RPPH_RUTMC RNA pyrophosphohydrolase OS=Ruthia magnifica subsp. Calyptogena
magnifica GN=rppH PE=3 SV=1
Length = 179
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 39/157 (24%)
Query: 64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-------------------------- 97
EGYR NVGI + N +++ A RL DSWQ+PQ
Sbjct: 5 EGYRANVGIVITNDKQQVLLAKRLK-QDSWQLPQGGIDFGESELDALFRELNEEIGLSFE 63
Query: 98 -------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 150
P WL YDFP +KH+ GQ Q WFLL+ E I L + +
Sbjct: 64 HISILAKTPKWLRYDFPDY---HIKHKQKPVCIGQKQVWFLLRLISNENNIKL--NMHTQ 118
Query: 151 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187
EF +W W+ + +E +DFKKP+Y+++ P L
Sbjct: 119 VEFDDWAWVDYWRPIEDVIDFKKPIYEDMLKALAPVL 155
>sp|P61787|RPPH_WOLPM RNA pyrophosphohydrolase OS=Wolbachia pipientis wMel GN=rppH PE=3
SV=1
Length = 162
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 36/161 (22%)
Query: 59 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQVPY------------------ 100
M + YR VGI L N F R + WQMPQ
Sbjct: 1 MVEQKDKYRPCVGIMLFNRQGHAFIGKRFESDSYWQMPQGGVDDGEELEQAALRELLEEV 60
Query: 101 -------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK 147
W+ Y+ P EV + W G + GQ Q+WFL+KF G++E+I++ +
Sbjct: 61 GTNKVKVITKSKDWIYYNLPEEV---IPICWNGKYSGQKQRWFLMKFCGEDEDIDI--NY 115
Query: 148 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
+ PEF EW+W + ++ A+ FKK VYK V F+ ++
Sbjct: 116 TGHPEFKEWRWQGIDSLVASAISFKKEVYKTVIEEFSSIIK 156
>sp|Q3SVH3|RPPH_NITWN RNA pyrophosphohydrolase OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rppH PE=3 SV=1
Length = 170
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 42/157 (26%)
Query: 66 YRRNVGICLINSSKKIFAASRLDI---PDS--WQMPQ----------------------- 97
YR VG+ LIN +F R + DS WQMPQ
Sbjct: 9 YRTCVGMMLINERGLVFVGRRAGVEQVDDSYVWQMPQGGVDPGEDTWLAAKRELYEETSV 68
Query: 98 --------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL--GDK 147
+P WLTYD P R W G ++GQ QKW+ ++F G++ EIN+ GD
Sbjct: 69 RSIEKLAEIPDWLTYDIP---RVVAGRAWKGRYRGQRQKWYAVRFIGEDNEINIANPGD- 124
Query: 148 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
KPEF W+W + + + FK+PVY+ V F
Sbjct: 125 GHKPEFTAWRWEPMQNLTGLIIPFKRPVYERVVKEFA 161
>sp|A4YKE4|RPPH_BRASO RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain ORS278)
GN=rppH PE=3 SV=1
Length = 168
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 67/158 (42%), Gaps = 42/158 (26%)
Query: 66 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQ---------------------- 97
YR VGI LINS +F R +D WQMPQ
Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDAWEAAKRELYEETS 68
Query: 98 ---------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL--GD 146
+ WLTYD P R W G ++GQ QKWF L+FTGK+ EI++ G
Sbjct: 69 VRSVEKLAEIDDWLTYDIP---RTVAGRAWKGRYRGQRQKWFALRFTGKDSEIDVEHPGG 125
Query: 147 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
K EF W+W + + V FK+PVY+ V F
Sbjct: 126 GHHKAEFITWRWEPLQNLPTLIVPFKRPVYERVAKEFA 163
>sp|P61786|RPPH_RHOPA RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rppH PE=3 SV=1
Length = 168
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 41/157 (26%)
Query: 66 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQ---------------------- 97
YR VG+ LIN +F R +D WQMPQ
Sbjct: 9 YRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWKAAKRELYEETS 68
Query: 98 ---------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DK 147
VP WL YD P R W G ++GQ QKWF +FTG + EIN++
Sbjct: 69 VNSVEKLAEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFAARFTGADSEINVVHPGG 125
Query: 148 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
K EF W+W + E V FK+PVY+ V F+
Sbjct: 126 GHKAEFTSWRWEPMHNLPELIVPFKRPVYERVVKEFS 162
>sp|Q2YBW4|RPPH_NITMU RNA pyrophosphohydrolase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rppH PE=3 SV=1
Length = 187
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 39/150 (26%)
Query: 65 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ--------------------------- 97
GYR NVGI L+NS ++F R+ DSWQ PQ
Sbjct: 6 GYRSNVGIILLNSKNEVFWGKRIR-QDSWQFPQGGIKPGESPEQAMYRELTEEVGLRPWH 64
Query: 98 ------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 151
WL YD P + +K W G+++GQ Q W+LL+ G + +++L S +P
Sbjct: 65 VQILGRTRDWLRYDVPAQW---IKRDWRGNYRGQKQIWYLLRLLGSDCDVSL--HTSGRP 119
Query: 152 EFGEWKWMSPEQILERAVDFKKPVYKEVFT 181
EF W+W LE V+FK+ VY++ T
Sbjct: 120 EFDAWRWNQYWVELESVVEFKRQVYRQALT 149
>sp|Q89X78|RPPH_BRAJA RNA pyrophosphohydrolase OS=Bradyrhizobium japonicum (strain USDA
110) GN=rppH PE=3 SV=1
Length = 167
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 67/157 (42%), Gaps = 41/157 (26%)
Query: 66 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQ---------------------- 97
YR VG+ LIN+ +F R +D WQMPQ
Sbjct: 9 YRTCVGVMLINAKGLVFIGRRAGGIEHIDDTHVWQMPQGGVDPGEDTWAAAKRELYEETS 68
Query: 98 ---------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DK 147
VP WL YD P R W G ++GQ QKWF ++FTGK+ EIN+
Sbjct: 69 VRSVERLGEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFAVRFTGKDSEINVENPGG 125
Query: 148 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
K EF W+W + + + FK+PVY+ V F+
Sbjct: 126 GHKAEFVSWRWEPMKNLPGLIIPFKRPVYERVVKEFS 162
>sp|A5E954|RPPH_BRASB RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rppH PE=3 SV=1
Length = 168
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 66/158 (41%), Gaps = 42/158 (26%)
Query: 66 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQ---------------------- 97
YR VGI LINS +F R +D WQMPQ
Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDAHVWQMPQGGVDPGEDAWEAAKRELYEETS 68
Query: 98 ---------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL--GD 146
+ WLTYD P R W G ++GQ QKWF L+FTG + EI++ G
Sbjct: 69 VRSVEKLAEIDDWLTYDIP---RTVAGRAWKGRYRGQRQKWFALRFTGTDTEIDVERPGG 125
Query: 147 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184
K EF W+W + + V FK+PVY+ V F
Sbjct: 126 GVHKAEFISWRWEPMQNLPTLIVPFKRPVYERVVKEFA 163
>sp|Q9A2W6|RPPH_CAUCR RNA pyrophosphohydrolase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rppH PE=3 SV=1
Length = 172
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 28 FTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRL 87
T ++P P + + L H ++ APP ++ G ++ + + A+R
Sbjct: 1 MTELDHPQHRP-NVGVVLFHPDGRVWLGRRHRQAPPYNWQFPQG--GVDEGEDLEVAARR 57
Query: 88 DIPDSWQMPQVPY------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
++ + + V W+TYDFPPEV KH G W+GQ Q WF +F G+E EI
Sbjct: 58 ELAEETGVTSVELLGRTEGWITYDFPPEVMANPKHARG--WRGQKQVWFAYRFVGEESEI 115
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 183
+L D E EF W+W ++ E V FK+ VY+ V F
Sbjct: 116 DLEAD--EHIEFDAWRWGRLDETPELIVPFKRGVYEAVVAAF 155
>sp|B8H5H3|RPPH_CAUCN RNA pyrophosphohydrolase OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=rppH PE=3 SV=1
Length = 172
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 28 FTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRL 87
T ++P P + + L H ++ APP ++ G ++ + + A+R
Sbjct: 1 MTELDHPQHRP-NVGVVLFHPDGRVWLGRRHRQAPPYNWQFPQG--GVDEGEDLEVAARR 57
Query: 88 DIPDSWQMPQVPY------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 141
++ + + V W+TYDFPPEV KH G W+GQ Q WF +F G+E EI
Sbjct: 58 ELAEETGVTSVELLGRTEGWITYDFPPEVMANPKHARG--WRGQKQVWFAYRFVGEESEI 115
Query: 142 NLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 183
+L D E EF W+W ++ E V FK+ VY+ V F
Sbjct: 116 DLEAD--EHIEFDAWRWGRLDETPELIVPFKRGVYEAVVAAF 155
>sp|Q83BF8|RPPH_COXBU RNA pyrophosphohydrolase OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rppH PE=3 SV=1
Length = 228
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 37/158 (23%)
Query: 64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-------------------------- 97
G+R VG+ ++N ++ R+ PD+WQ PQ
Sbjct: 75 RGFRLGVGMVIMNRQGELLWGRRVGNPDAWQFPQGGLLPNETLREALNRELDEEVGLSPH 134
Query: 98 -VPY------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 150
V Y W++Y P + R + +H+ G GQ QKWFLL+FTGK++ I+L D +
Sbjct: 135 DVIYLRETRQWISYRLPKKFR-RPEHR-GPVCIGQRQKWFLLQFTGKDDAISL--DHCSQ 190
Query: 151 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 188
PEF +W+W+ ++ V+FK+ VY++V T F ++
Sbjct: 191 PEFDQWRWVDYWYPVDHVVEFKRDVYQKVLTEFAEFIR 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,499,697
Number of Sequences: 539616
Number of extensions: 3404325
Number of successful extensions: 8799
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 7760
Number of HSP's gapped (non-prelim): 702
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)