Query 029744
Match_columns 188
No_of_seqs 141 out of 498
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f3y_A Diadenosine 5',5'''-P1, 99.8 1.6E-19 5.6E-24 135.7 12.1 131 57-187 4-165 (165)
2 2kdv_A RNA pyrophosphohydrolas 99.7 4.3E-18 1.5E-22 132.4 8.2 119 63-187 4-155 (164)
3 3u53_A BIS(5'-nucleosyl)-tetra 98.3 6.1E-07 2.1E-11 67.8 5.4 88 70-169 6-127 (155)
4 2o1c_A DATP pyrophosphohydrola 98.2 1.3E-05 4.4E-10 58.5 10.5 32 66-97 6-40 (150)
5 3grn_A MUTT related protein; s 98.2 1.4E-06 4.7E-11 65.3 4.0 34 64-97 5-42 (153)
6 3eds_A MUTT/nudix family prote 98.0 4.6E-06 1.6E-10 62.8 4.9 31 65-97 19-49 (153)
7 2jvb_A Protein PSU1, mRNA-deca 98.0 1.7E-06 5.9E-11 63.9 1.7 96 68-170 5-117 (146)
8 3son_A Hypothetical nudix hydr 97.9 4.3E-05 1.5E-09 56.6 8.4 91 66-170 4-127 (149)
9 4dyw_A MUTT/nudix family prote 97.8 8.8E-06 3E-10 61.7 3.4 111 57-178 20-152 (157)
10 3gg6_A Nudix motif 18, nucleos 97.8 2.5E-05 8.6E-10 58.3 5.7 105 68-181 21-145 (156)
11 1sjy_A MUTT/nudix family prote 97.8 4.4E-05 1.5E-09 56.7 6.9 33 65-97 11-49 (159)
12 3h95_A Nucleoside diphosphate- 97.8 5.3E-05 1.8E-09 59.9 7.8 86 65-168 24-141 (199)
13 3id9_A MUTT/nudix family prote 97.8 3.6E-05 1.2E-09 58.4 6.3 32 65-97 21-52 (171)
14 2fkb_A Putative nudix hydrolas 97.8 7E-05 2.4E-09 57.2 8.0 32 66-97 36-72 (180)
15 1ktg_A Diadenosine tetraphosph 97.8 3.6E-05 1.2E-09 55.9 5.3 110 67-183 3-135 (138)
16 3shd_A Phosphatase NUDJ; nudix 97.7 8.5E-05 2.9E-09 55.1 7.3 32 66-97 2-35 (153)
17 3i7u_A AP4A hydrolase; nudix p 97.7 1.9E-05 6.7E-10 59.1 3.8 93 69-182 6-128 (134)
18 1hzt_A Isopentenyl diphosphate 97.7 5.5E-05 1.9E-09 59.0 5.7 33 65-97 30-67 (190)
19 1q27_A Putative nudix hydrolas 97.7 2.4E-05 8.2E-10 59.4 3.5 109 67-184 34-168 (171)
20 1vcd_A NDX1; nudix protein, di 97.7 0.00033 1.1E-08 49.9 9.0 27 69-97 4-30 (126)
21 1rya_A GDP-mannose mannosyl hy 97.6 1E-05 3.4E-10 60.2 0.9 31 67-97 18-50 (160)
22 3r03_A Nudix hydrolase; struct 97.5 5.7E-05 2E-09 55.1 3.2 33 65-97 6-41 (144)
23 3f6a_A Hydrolase, nudix family 97.5 0.00024 8.1E-09 53.4 6.6 30 66-97 5-34 (159)
24 2pbt_A AP4A hydrolase; nudix p 97.5 0.00014 4.6E-09 52.3 4.9 28 67-97 4-31 (134)
25 2b0v_A Nudix hydrolase; struct 97.4 0.00016 5.3E-09 53.3 4.7 34 150-183 103-136 (153)
26 2yyh_A MUTT domain, 8-OXO-DGTP 97.4 8.7E-05 3E-09 54.3 2.8 32 66-97 8-43 (139)
27 3oga_A Nucleoside triphosphata 97.4 0.00032 1.1E-08 52.9 6.0 30 68-97 28-61 (165)
28 3hhj_A Mutator MUTT protein; n 97.3 0.00022 7.4E-09 53.4 4.7 33 65-97 27-62 (158)
29 3ees_A Probable pyrophosphohyd 97.3 0.00018 6.2E-09 52.6 4.1 29 69-97 23-54 (153)
30 3fcm_A Hydrolase, nudix family 97.3 0.00058 2E-08 53.6 7.0 113 65-184 43-185 (197)
31 2yvp_A NDX2, MUTT/nudix family 97.3 0.0001 3.5E-09 56.8 2.5 32 66-97 40-74 (182)
32 2a6t_A SPAC19A8.12; alpha/beta 97.2 7.5E-05 2.6E-09 63.3 1.2 94 69-168 103-213 (271)
33 3gwy_A Putative CTP pyrophosph 97.2 0.0006 2E-08 50.0 5.7 31 66-97 5-40 (140)
34 2azw_A MUTT/nudix family prote 97.0 0.0016 5.5E-08 47.4 6.7 30 66-97 17-47 (148)
35 1nqz_A COA pyrophosphatase (MU 97.0 0.00049 1.7E-08 53.5 4.1 33 65-97 32-70 (194)
36 3exq_A Nudix family hydrolase; 97.0 0.0018 6.3E-08 48.9 6.6 33 65-97 8-43 (161)
37 2qjt_B Nicotinamide-nucleotide 97.0 0.0017 5.9E-08 54.8 7.1 112 67-183 208-348 (352)
38 3q1p_A Phosphohydrolase (MUTT/ 97.0 0.0015 5.2E-08 52.0 6.4 29 67-97 68-96 (205)
39 1v8y_A ADP-ribose pyrophosphat 96.9 0.00018 6.3E-09 54.8 0.9 93 66-168 33-145 (170)
40 2w4e_A MUTT/nudix family prote 96.8 0.0012 4.2E-08 49.1 4.7 95 66-168 4-118 (145)
41 2pqv_A MUTT/nudix family prote 96.8 0.00042 1.4E-08 51.5 1.7 30 64-97 16-45 (154)
42 3cng_A Nudix hydrolase; struct 96.8 0.0018 6.2E-08 50.6 5.3 30 67-97 40-71 (189)
43 2rrk_A ORF135, CTP pyrophospho 96.7 0.0024 8.2E-08 46.0 5.5 29 69-97 10-41 (140)
44 1mut_A MUTT, nucleoside tripho 96.6 0.00069 2.3E-08 48.1 1.8 30 67-97 5-37 (129)
45 2qjo_A Bifunctional NMN adenyl 96.5 0.004 1.4E-07 52.0 6.2 30 67-97 203-234 (341)
46 3o8s_A Nudix hydrolase, ADP-ri 96.5 0.0032 1.1E-07 50.2 5.2 27 68-97 71-97 (206)
47 3q93_A 7,8-dihydro-8-oxoguanin 96.4 0.0036 1.2E-07 48.5 4.9 32 66-97 23-56 (176)
48 3fsp_A A/G-specific adenine gl 96.4 0.027 9.1E-07 49.3 10.8 33 65-97 238-273 (369)
49 3f13_A Putative nudix hydrolas 96.3 0.0047 1.6E-07 47.8 5.0 101 68-184 16-132 (163)
50 1vk6_A NADH pyrophosphatase; 1 96.2 0.0027 9.1E-08 54.0 3.6 101 72-184 144-261 (269)
51 3fjy_A Probable MUTT1 protein; 96.1 0.0035 1.2E-07 54.1 3.4 106 76-183 35-175 (364)
52 1x51_A A/G-specific adenine DN 95.7 0.011 3.8E-07 43.9 4.6 31 67-97 19-55 (155)
53 1mk1_A ADPR pyrophosphatase; n 95.7 0.0072 2.4E-07 48.0 3.5 97 66-170 42-161 (207)
54 2b06_A MUTT/nudix family prote 95.6 0.0091 3.1E-07 44.0 3.5 31 66-97 7-42 (155)
55 2fb1_A Conserved hypothetical 95.4 0.006 2.1E-07 49.7 2.2 31 67-97 13-48 (226)
56 3fk9_A Mutator MUTT protein; s 95.4 0.0067 2.3E-07 47.6 2.4 27 69-97 6-32 (188)
57 3i9x_A MUTT/nudix family prote 95.0 0.02 7E-07 44.2 4.0 36 150-185 138-174 (187)
58 3dup_A MUTT/nudix family prote 94.7 0.019 6.5E-07 50.0 3.4 103 66-184 117-262 (300)
59 2fvv_A Diphosphoinositol polyp 94.6 0.03 1E-06 44.5 4.1 35 63-97 36-72 (194)
60 3o6z_A GDP-mannose pyrophospha 94.3 0.052 1.8E-06 42.6 4.7 97 67-168 45-167 (191)
61 1g0s_A Hypothetical 23.7 kDa p 93.6 0.058 2E-06 43.1 3.9 97 68-169 58-181 (209)
62 1k2e_A Nudix homolog; nudix/MU 93.6 0.04 1.4E-06 41.1 2.8 28 68-97 2-29 (156)
63 1vhz_A ADP compounds hydrolase 93.1 0.095 3.2E-06 41.5 4.3 95 67-170 49-163 (198)
64 2dsc_A ADP-sugar pyrophosphata 92.7 0.12 4.2E-06 41.0 4.5 52 121-173 137-189 (212)
65 2pny_A Isopentenyl-diphosphate 92.1 0.13 4.6E-06 42.8 4.2 32 66-97 69-104 (246)
66 2dho_A Isopentenyl-diphosphate 92.1 0.13 4.4E-06 42.5 4.0 32 66-97 58-93 (235)
67 3e57_A Uncharacterized protein 91.4 0.084 2.9E-06 43.8 2.2 39 58-97 59-104 (211)
68 3q91_A Uridine diphosphate glu 90.3 0.034 1.2E-06 45.6 -1.1 47 121-168 143-189 (218)
69 3qsj_A Nudix hydrolase; struct 83.9 0.55 1.9E-05 39.0 2.6 33 65-97 6-46 (232)
70 3gz5_A MUTT/nudix family prote 81.5 0.78 2.7E-05 37.5 2.6 30 68-97 23-57 (240)
71 1u20_A U8 snoRNA-binding prote 80.0 0.41 1.4E-05 38.2 0.4 27 69-97 46-72 (212)
72 3rh7_A Hypothetical oxidoreduc 76.5 5.3 0.00018 34.6 6.4 28 154-183 263-290 (321)
73 2w4l_A DCMP deaminse, deoxycyt 55.6 7.7 0.00026 31.0 2.9 16 67-82 31-46 (178)
74 2fml_A MUTT/nudix family prote 54.0 9.6 0.00033 31.5 3.4 31 67-97 39-76 (273)
75 3bho_A Cleavage and polyadenyl 51.4 6.9 0.00024 32.8 2.1 31 65-97 56-89 (208)
76 3b8f_A Putative blasticidin S 44.7 16 0.00055 28.1 3.1 22 66-88 22-43 (142)
77 3bqa_A Sensor protein PHOQ; hi 42.3 10 0.00035 30.5 1.6 34 71-111 43-85 (148)
78 1uwz_A Cytidine deaminase; CDD 40.6 18 0.0006 27.7 2.7 20 69-88 25-44 (136)
79 2z3g_A Blasticidin-S deaminase 39.1 19 0.00066 27.2 2.7 21 68-88 27-47 (130)
80 2d30_A Cytidine deaminase; pur 37.7 21 0.00072 27.7 2.8 20 69-88 34-53 (141)
81 3dmo_A Cytidine deaminase; str 35.9 23 0.00078 27.6 2.7 20 69-88 33-52 (138)
82 1r5t_A Cytidine deaminase; zin 34.9 25 0.00085 27.1 2.8 20 69-88 33-52 (142)
83 2fr5_A Cytidine deaminase; tet 33.8 26 0.00088 27.3 2.7 20 69-88 37-56 (146)
84 3mpz_A Cytidine deaminase; ssg 33.7 24 0.00083 27.9 2.6 20 69-88 47-66 (150)
85 3r2n_A Cytidine deaminase; str 33.4 25 0.00086 27.2 2.6 20 69-88 32-51 (138)
86 3oj6_A Blasticidin-S deaminase 30.5 31 0.0011 27.5 2.7 20 69-88 52-71 (158)
87 2kct_A Cytochrome C-type bioge 25.5 87 0.003 22.8 4.2 28 60-87 51-81 (94)
88 1p6o_A Cytosine deaminase; hyd 24.8 53 0.0018 25.5 3.1 16 67-82 33-49 (161)
89 2a8n_A Cytidine and deoxycytid 24.5 45 0.0015 25.2 2.6 15 67-82 23-37 (144)
90 3a0s_A Sensor protein; PAS-fol 24.4 58 0.002 18.9 2.6 17 70-86 3-19 (96)
91 1vq2_A DCMP deaminase, deoxycy 23.4 42 0.0014 26.6 2.3 15 67-82 21-35 (193)
92 4hi4_A Aerotaxis transducer AE 21.4 63 0.0021 21.6 2.6 17 70-86 16-32 (121)
93 1ll8_A PAS kinase; PAS domain, 21.3 70 0.0024 20.6 2.8 19 68-86 7-26 (114)
94 1egw_A MADS box transcription 20.9 58 0.002 22.9 2.4 16 68-83 40-55 (77)
No 1
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.81 E-value=1.6e-19 Score=135.70 Aligned_cols=131 Identities=79% Similarity=1.492 Sum_probs=112.3
Q ss_pred cccCCCCCCCCcceEEEEEcCCCcEEEEEeCCCCCCccCCC-------------------------------CCCceeec
Q 029744 57 YSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-------------------------------VPYWLTYD 105 (188)
Q Consensus 57 ~~~~~~~~~YR~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ-------------------------------t~~WL~YD 105 (188)
.+|+.++..||.+|+++|+|.+|+||+.+|...+|.|++|. ...|++|.
T Consensus 4 ~~~~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~ 83 (165)
T 1f3y_A 4 GSMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYD 83 (165)
T ss_dssp CCCSSCCSSCCCEEEEEEECTTSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCC
T ss_pred ccccCCccceeeeEEEEEECCCCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeee
Confidence 45778888999999999999999999999986568999999 23467889
Q ss_pred CChhhHHhhhhccCCCcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCCCCHHHHHHHHHHhhh
Q 029744 106 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP 185 (188)
Q Consensus 106 lP~~~~~~~~~~~~~~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~FKR~VY~~vl~eF~p 185 (188)
+|......+...+...+.|+.+.+|+++..+.+.++++.++..+..|.++++|++++++.+.+.+|++++|+++++.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l~~ 163 (165)
T 1f3y_A 84 FPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAP 163 (165)
T ss_dssp CCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHHGG
T ss_pred cCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 99876554555667788999999999999987778887644446779999999999999999999999999999999998
Q ss_pred cc
Q 029744 186 HL 187 (188)
Q Consensus 186 ~i 187 (188)
++
T Consensus 164 ~~ 165 (165)
T 1f3y_A 164 HL 165 (165)
T ss_dssp GC
T ss_pred cC
Confidence 75
No 2
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.74 E-value=4.3e-18 Score=132.35 Aligned_cols=119 Identities=37% Similarity=0.724 Sum_probs=101.9
Q ss_pred CCCCCcceEEEEEcCCCcEEEEEeCCCCCCccCCC---------------------------------CCCceeecCChh
Q 029744 63 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ---------------------------------VPYWLTYDFPPE 109 (188)
Q Consensus 63 ~~~YR~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ---------------------------------t~~WL~YDlP~~ 109 (188)
..+||++|+++|+|.+|+|++.+|.+ +|.|++|. ...|+.|++|..
T Consensus 4 ~~~~~~~v~~~i~~~~~~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
T 2kdv_A 4 DDGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKR 82 (164)
T ss_dssp SSSEEEEEEEEEECTTSEEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTT
T ss_pred CCCCCcEEEEEEEccCCEEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCcc
Confidence 44799999999999999999999987 78999998 456888999986
Q ss_pred hHHhhhhccCCCcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCCCCHHHHHHHHHHhhhcc
Q 029744 110 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 187 (188)
Q Consensus 110 ~~~~~~~~~~~~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~FKR~VY~~vl~eF~p~i 187 (188)
.. .....+.+.||.+.||++++.+.+.+++++. ++++|+++++|++++++++.+.+|++++|++++.+|.+.+
T Consensus 83 ~~---~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~--~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~~l 155 (164)
T 2kdv_A 83 LV---RWDTKPVCIGQKQKWFLLQLVSGDAEINMQT--SSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVV 155 (164)
T ss_dssp TC---CTTSSSCCCEEEEEEEEEEESSCGGGCCSCS--SSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ee---eeccCcccccceeEEEEEEecCCccccccCC--CCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 53 1223457899999999999998877888752 3568999999999999999999999999999999998754
No 3
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=98.32 E-value=6.1e-07 Score=67.84 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=54.7
Q ss_pred eEEEEE---------cCCCcEEEEEeCCCCCCccCCC-----------------------CCC--ceeecCChhhHHhhh
Q 029744 70 VGICLI---------NSSKKIFAASRLDIPDSWQMPQ-----------------------VPY--WLTYDFPPEVREKLK 115 (188)
Q Consensus 70 VGivl~---------N~~g~Vfvg~R~d~~~aWQfPQ-----------------------t~~--WL~YDlP~~~~~~~~ 115 (188)
+|+||| |++++||+.+|.+.++.|.||. ... -+-..+....
T Consensus 6 ~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~----- 80 (155)
T 3u53_A 6 CGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKREL----- 80 (155)
T ss_dssp EEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE-----
T ss_pred eEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeee-----
Confidence 366666 8899999999988778999999 000 0000000000
Q ss_pred hccCCCcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCC
Q 029744 116 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 169 (188)
Q Consensus 116 ~~~~~~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV 169 (188)
............+|++...+.+.++.+ ..|.++++|++++|+.+.+.
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~W~~~~ea~~~~~ 127 (155)
T 3u53_A 81 -NYVARNKPKTVIYWLAEVKDYDVEIRL------SHEHQAYRWLGLEEACQLAQ 127 (155)
T ss_dssp -EEEETTEEEEEEEEEEEESCTTCCCCC------CTTEEEEEEECHHHHHHHHC
T ss_pred -ecCCCcceeEEEEEEEEEeccCCccCC------CcceeEEEEeEHHHHHHHcC
Confidence 001122334456677777665555544 35899999999999987653
No 4
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=98.23 E-value=1.3e-05 Score=58.48 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=27.3
Q ss_pred CCc--ceEEEEEcCC-CcEEEEEeCCCCCCccCCC
Q 029744 66 YRR--NVGICLINSS-KKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 66 YR~--NVGivl~N~~-g~Vfvg~R~d~~~aWQfPQ 97 (188)
||+ .|+++|+|.+ |+|++.+|.+.+|.|+||.
T Consensus 6 ~~~~~~v~~~i~~~~~~~vLl~~r~~~~g~w~~Pg 40 (150)
T 2o1c_A 6 YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVT 40 (150)
T ss_dssp CBCSEEEEEEEEETTTCEEEEEECSSSTTCEESEE
T ss_pred ccCceEEEEEEEeCCCCEEEEEEecCCCCceECCc
Confidence 665 6788999985 9999999987678999999
No 5
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=98.16 E-value=1.4e-06 Score=65.25 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCCCcceEEEEEcCCCcEEEEEeCCC----CCCccCCC
Q 029744 64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQ 97 (188)
Q Consensus 64 ~~YR~NVGivl~N~~g~Vfvg~R~d~----~~aWQfPQ 97 (188)
..++..|++||+|.+|+||+.+|... +|.|.||.
T Consensus 5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~Pg 42 (153)
T 3grn_A 5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPG 42 (153)
T ss_dssp SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSE
T ss_pred CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECce
Confidence 45899999999999999999999864 37999998
No 6
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=98.04 E-value=4.6e-06 Score=62.82 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 65 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
..++.|+++|+|.+|+||+.+|. .|.|.||.
T Consensus 19 ~~~~~v~~ii~~~~~~vLL~~r~--~~~w~lPg 49 (153)
T 3eds_A 19 IFXPSVAAVIKNEQGEILFQYPG--GEYWSLPA 49 (153)
T ss_dssp EEEEEEEEEEBCTTCCEEEECC-----CBBCSE
T ss_pred EEeeeEEEEEEcCCCeEEEEEcC--CCcEECCc
Confidence 37889999999999999999997 68999999
No 7
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.7e-06 Score=63.85 Aligned_cols=96 Identities=17% Similarity=0.282 Sum_probs=57.7
Q ss_pred cceEEEEEcCC-CcEEEEEeCCCCCCccCCC---C-------------CCceeecCChhhHHhhhhccCCCcccccceEE
Q 029744 68 RNVGICLINSS-KKIFAASRLDIPDSWQMPQ---V-------------PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWF 130 (188)
Q Consensus 68 ~NVGivl~N~~-g~Vfvg~R~d~~~aWQfPQ---t-------------~~WL~YDlP~~~~~~~~~~~~~~y~GQkQkWF 130 (188)
+.||++|+|++ |+|++.+|.+ +|.|+||. . .+-.-++... +. .+.........|+...+|
T Consensus 5 ~~~~~~i~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~-~~-~~~~~~~~~~~~~~~~~~ 81 (146)
T 2jvb_A 5 PVRGAAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD-YI-DDNQFIERNIQGKNYKIF 81 (146)
T ss_dssp CCEEEEEBCTTSSEEEEECCSS-SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS-SS-CSSCEEEEEETTEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEcC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH-hc-ccccccccccCCceEEEE
Confidence 46888999986 9999999976 68999999 0 0111111110 00 000000112356666777
Q ss_pred EEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCC
Q 029744 131 LLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 170 (188)
Q Consensus 131 L~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~ 170 (188)
++.+.....+... ....|..+++|++++++.+.+.+
T Consensus 82 ~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~ 117 (146)
T 2jvb_A 82 LISGVSEVFNFKP----QVRNEIDKIEWFDFKKISKTMYK 117 (146)
T ss_dssp EECCCCSSSCCCC----CCSSSCCCEEEEEHHHHHTGGGC
T ss_pred EEEeccccccCCc----CCcchhheeEEeEHHHHHhhhcc
Confidence 7765543322222 23568999999999999987654
No 8
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=97.93 E-value=4.3e-05 Score=56.60 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCcceEEEEE---cCCCcEEEEEeCCCCCCccCCC-------------------------CCC--ce--eecCChhhHHh
Q 029744 66 YRRNVGICLI---NSSKKIFAASRLDIPDSWQMPQ-------------------------VPY--WL--TYDFPPEVREK 113 (188)
Q Consensus 66 YR~NVGivl~---N~~g~Vfvg~R~d~~~aWQfPQ-------------------------t~~--WL--~YDlP~~~~~~ 113 (188)
.+..|+++++ |.+|+||+.+|.+ +|.|.||. ... -+ .|.+|...
T Consensus 4 ~~~~v~vvi~~~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~--- 79 (149)
T 3son_A 4 QPFQVLVIPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFH--- 79 (149)
T ss_dssp CCCEEEEEEEEECSSSEEEEEEEESS-SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGG---
T ss_pred CceEEEEEEEEecCCCeEEEEEEEcC-CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeeccccee---
Confidence 3457888887 7889999999987 58999999 111 01 13333211
Q ss_pred hhhccC-CCcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCC
Q 029744 114 LKHQWG-GDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 170 (188)
Q Consensus 114 ~~~~~~-~~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~ 170 (188)
+. ..-......+|+++....+.++.+ ..|..+++|++++++.+.+..
T Consensus 80 ----~~~~~~~~~~~~~f~~~~~~~~~~~~~------~~E~~~~~W~~~~el~~~~~~ 127 (149)
T 3son_A 80 ----FSFNKPYVVPEYCFAIDLTSCSYQVTL------SLEHSELRWVSYESAIQLLEW 127 (149)
T ss_dssp ----TCSSSCSEEEEEEEEEECTTTGGGCCC------CTTEEEEEEECHHHHHHHCCC
T ss_pred ----eccCCceEeEEEEEEEEcCCCCCcccC------CCceeeEEEeCHHHHHHHhcC
Confidence 11 110112335777777643445554 258999999999999988653
No 9
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=97.84 E-value=8.8e-06 Score=61.68 Aligned_cols=111 Identities=13% Similarity=0.190 Sum_probs=59.0
Q ss_pred cccCCCCCCCCcceEEEEEcCCCcEEEEEeCCC--CCCccCCC---CCC-------------ceeecC--ChhhHHhhhh
Q 029744 57 YSMDAPPEGYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQ---VPY-------------WLTYDF--PPEVREKLKH 116 (188)
Q Consensus 57 ~~~~~~~~~YR~NVGivl~N~~g~Vfvg~R~d~--~~aWQfPQ---t~~-------------WL~YDl--P~~~~~~~~~ 116 (188)
.+|.. +...|..|+++|+| +|+||+.+|.+. .|.|+||. .++ -+-++. ..-+ .
T Consensus 20 ~~m~~-~~~~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~-----~ 92 (157)
T 4dyw_A 20 GSMQH-TEQPRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLL-----C 92 (157)
T ss_dssp -------CCCEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEE-----E
T ss_pred CCCCC-CCCceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEE-----E
Confidence 35554 34588999999999 799999999853 47899998 110 000100 0000 0
Q ss_pred ccCCCcccccceEEEEEEcCC--CCeeeecCCCCCCCCcCceEeeChhhHhhcCCCCCHHHHHH
Q 029744 117 QWGGDWKGQAQKWFLLKFTGK--EEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKE 178 (188)
Q Consensus 117 ~~~~~y~GQkQkWFL~rf~G~--ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~FKR~VY~~ 178 (188)
.....+.+....|..+-|.+. +.++.. .+..|..+++|++++++.+.+.+.-+.+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~l~~~~~~~l~~ 152 (157)
T 4dyw_A 93 VVDHIDAANGEHWVAPVYLAHAFSGEPRV----VEPDRHEALGWFALDDLPQPLTHATRIALEQ 152 (157)
T ss_dssp EEEEEETTTTEEEEEEEEEESEEESCCCC----SCTTTEEEEEEEETTSCCSSBCHHHHHHHHH
T ss_pred EEEeeccCCCcEEEEEEEEEEEcCCCccc----CCCCcEeEEEEECHHHcccccCHHHHHHHHH
Confidence 000112222334433333332 222222 2346899999999999998665544444433
No 10
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=97.83 E-value=2.5e-05 Score=58.31 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=57.7
Q ss_pred cceEEEEEcCCCcEEEEEeCCC--CCCccCCC---CC-------------CceeecCCh-hhHHhhhhccCCCcccccce
Q 029744 68 RNVGICLINSSKKIFAASRLDI--PDSWQMPQ---VP-------------YWLTYDFPP-EVREKLKHQWGGDWKGQAQK 128 (188)
Q Consensus 68 ~NVGivl~N~~g~Vfvg~R~d~--~~aWQfPQ---t~-------------~WL~YDlP~-~~~~~~~~~~~~~y~GQkQk 128 (188)
..|+++|+|.+|+||+.+|.+. +|.|.||. .+ +-.-++... .+ +.. .. ...+....
T Consensus 21 ~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~---~~~-~~-~~~~~~~~ 95 (156)
T 3gg6_A 21 YVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETL---LSV-EE-RGPSWVRF 95 (156)
T ss_dssp EEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE---EEE-EE-SSTTEEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeE---EEE-Ec-CCCCEEEE
Confidence 3467788999999999999864 37999998 10 001111000 00 000 00 01122334
Q ss_pred EEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCCCC-HHHHHHHHH
Q 029744 129 WFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK-KPVYKEVFT 181 (188)
Q Consensus 129 WFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~FK-R~VY~~vl~ 181 (188)
.|+.+..+.+ +... .....|..+++|++++++.+.+-.-. +++.+.+..
T Consensus 96 ~f~~~~~~~~--~~~~--~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 145 (156)
T 3gg6_A 96 VFLARPTGGI--LKTS--KEADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQ 145 (156)
T ss_dssp EEEEEEEEEC--CCCG--GGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHH
T ss_pred EEEEEeeCCe--eccC--CCCCcceeeeEEEcHHHCcccccchhHHHHHHHHHH
Confidence 5555554322 2211 02346999999999999998765543 334444433
No 11
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=97.83 E-value=4.4e-05 Score=56.68 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=29.2
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCC------CCCCccCCC
Q 029744 65 GYRRNVGICLINSSKKIFAASRLD------IPDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g~Vfvg~R~d------~~~aWQfPQ 97 (188)
.++..|+++|+|.+|+|++.+|.. .+|.|+||.
T Consensus 11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~Pg 49 (159)
T 1sjy_A 11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPS 49 (159)
T ss_dssp CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSE
T ss_pred eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCc
Confidence 378899999999999999999985 348999998
No 12
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=97.83 E-value=5.3e-05 Score=59.88 Aligned_cols=86 Identities=15% Similarity=0.295 Sum_probs=53.8
Q ss_pred CCCcceEEEEEcC-CCcEEEEEeCCC-CCCccCCC-----------------------CC---Ccee----ecCChhhHH
Q 029744 65 GYRRNVGICLINS-SKKIFAASRLDI-PDSWQMPQ-----------------------VP---YWLT----YDFPPEVRE 112 (188)
Q Consensus 65 ~YR~NVGivl~N~-~g~Vfvg~R~d~-~~aWQfPQ-----------------------t~---~WL~----YDlP~~~~~ 112 (188)
..+..|+++|++. +|+||+.+|.+. .|.|.+|. .. ..+. |..|
T Consensus 24 ~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~----- 98 (199)
T 3h95_A 24 SHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNP----- 98 (199)
T ss_dssp --CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC--------
T ss_pred cccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCC-----
Confidence 4677888888886 589999999753 48999999 00 1111 1111
Q ss_pred hhhhccCCCcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcC
Q 029744 113 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 168 (188)
Q Consensus 113 ~~~~~~~~~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~V 168 (188)
...+....+|+++....+.+++++ .-|.++++|++++++.+..
T Consensus 99 --------~~~~~~~~~~~~~~~~~~~~~~~~-----~~E~~~~~W~~~~el~~~~ 141 (199)
T 3h95_A 99 --------GAFGKSDMYIICRLKPYSFTINFC-----QEECLRCEWMDLNDLAKTE 141 (199)
T ss_dssp --------------CEEEEEEEEESCCCCCCC-----TTTEEEEEEEEHHHHHHCS
T ss_pred --------CCceeEEEEEEEEEcCCCcccCCC-----ccceeeeEEEeHHHHhhhh
Confidence 112344567777776555444442 4689999999999998764
No 13
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=97.81 E-value=3.6e-05 Score=58.41 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=27.5
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 65 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
.++..|++||+| +|+|++.+|....|.|.||.
T Consensus 21 ~~~~~v~~ii~~-~~~vLL~~r~~~~~~w~~Pg 52 (171)
T 3id9_A 21 IMQVRVTGILIE-DEKVLLVKQKVANRDWSLPG 52 (171)
T ss_dssp -CEEEEEEEEEE-TTEEEEEECSSTTCCEECCE
T ss_pred ceEEEEEEEEEE-CCEEEEEEEECCCCeEECCC
Confidence 478899999998 59999999986568999999
No 14
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=97.81 E-value=7e-05 Score=57.25 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=27.2
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC----CCCccC-CC
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI----PDSWQM-PQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~----~~aWQf-PQ 97 (188)
+...|+++|+|.+|+||+.+|.+. +|.|+| |.
T Consensus 36 ~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pG 72 (180)
T 2fkb_A 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAG 72 (180)
T ss_dssp CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBC
T ss_pred eeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecC
Confidence 566899999999999999999764 467999 76
No 15
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=97.75 E-value=3.6e-05 Score=55.87 Aligned_cols=110 Identities=14% Similarity=0.246 Sum_probs=59.1
Q ss_pred CcceEEEEEcC---CCcEEEEEeCCCCCCccCCC---CC-------------CceeecCCh-hhH-Hhhh-hccCCCccc
Q 029744 67 RRNVGICLINS---SKKIFAASRLDIPDSWQMPQ---VP-------------YWLTYDFPP-EVR-EKLK-HQWGGDWKG 124 (188)
Q Consensus 67 R~NVGivl~N~---~g~Vfvg~R~d~~~aWQfPQ---t~-------------~WL~YDlP~-~~~-~~~~-~~~~~~y~G 124 (188)
+.+||+||+|. +|+||+.+|...+|.|+||. .+ +-.-++... .+. ..+. ......-..
T Consensus 3 ~~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 82 (138)
T 1ktg_A 3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKP 82 (138)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEE
T ss_pred eEEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCc
Confidence 46789999987 57999999975457999999 00 000010000 000 0000 000000012
Q ss_pred ccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCCC-CHHHHHHHHHHh
Q 029744 125 QAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYKEVFTVF 183 (188)
Q Consensus 125 QkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~F-KR~VY~~vl~eF 183 (188)
....+|+.+..+. .. . ....|..+++|++++++.+.+.+- =+.+.+++.+.+
T Consensus 83 ~~~~~f~~~~~~~-~~-~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l 135 (138)
T 1ktg_A 83 KSVKYWLAKLNNP-DD-V-----QLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFL 135 (138)
T ss_dssp EEEEEEEEEECSC-CC-C-----CCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEecCC-cc-c-----CCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHh
Confidence 3445666666543 11 1 234589999999999999875322 144555555443
No 16
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=97.74 E-value=8.5e-05 Score=55.06 Aligned_cols=32 Identities=16% Similarity=0.508 Sum_probs=24.2
Q ss_pred CCcceEE-EEEcCCCcEEEEEeCCC-CCCccCCC
Q 029744 66 YRRNVGI-CLINSSKKIFAASRLDI-PDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGi-vl~N~~g~Vfvg~R~d~-~~aWQfPQ 97 (188)
||+.|++ +|++.+|+||+.+|... .|.|.||.
T Consensus 2 ~~p~~~v~~ii~~~~~vLl~~r~~~~~~~w~~Pg 35 (153)
T 3shd_A 2 FKPHVTVACVVHAEGKFLVVEETINGKALWNQPA 35 (153)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEETTEEEEECSE
T ss_pred CCCceEEEEEEEeCCEEEEEEecCCCCCCEECCe
Confidence 5666665 55677899999999632 36799999
No 17
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=97.74 E-value=1.9e-05 Score=59.15 Aligned_cols=93 Identities=14% Similarity=0.293 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCcEEEEEeCCCCCCccCCC-------C-------------------CCc---eeecCChhhHHhhhhccC
Q 029744 69 NVGICLINSSKKIFAASRLDIPDSWQMPQ-------V-------------------PYW---LTYDFPPEVREKLKHQWG 119 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ-------t-------------------~~W---L~YDlP~~~~~~~~~~~~ 119 (188)
.+|+||+| +|+||+.+|. .|.|.||. + -+. +.|.++..
T Consensus 6 aag~vv~~-~~~vLL~~r~--~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~---------- 72 (134)
T 3i7u_A 6 SAGGVLFK-DGEVLLIKTP--SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLK---------- 72 (134)
T ss_dssp EEEEEEEE-TTEEEEEECT--TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEET----------
T ss_pred EEEEEEEE-CCEEEEEEeC--CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCC----------
Confidence 57778876 5899999984 48999999 0 011 11222211
Q ss_pred CCcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCC-CCCHHHHHHHHHH
Q 029744 120 GDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 182 (188)
Q Consensus 120 ~~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV-~FKR~VY~~vl~e 182 (188)
+...-..-.||+++..+.+ +.+ .-|.++++|++++++.+.+. +--|++.+++++.
T Consensus 73 ~~~~~~~~~~f~~~~~~~~--~~~------~~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l 128 (134)
T 3i7u_A 73 GERIFKTVKYYLMKYKEGE--PRP------SWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKL 128 (134)
T ss_dssp TEEEEEEEEEEEEEEEEEC--CCC------CTTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEEEcCCc--CcC------ChhheEEEEEEHHHHhhhcCChHHHHHHHHHHHH
Confidence 1112223457787775422 222 24889999999999998764 2335666665553
No 18
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=97.68 E-value=5.5e-05 Score=58.95 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=28.0
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCCC----CCCccC-CC
Q 029744 65 GYRRNVGICLINSSKKIFAASRLDI----PDSWQM-PQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g~Vfvg~R~d~----~~aWQf-PQ 97 (188)
.+.+.|+++|+|++|+||+.+|.+. +|.|++ |.
T Consensus 30 ~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~Pg 67 (190)
T 1hzt_A 30 RLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVC 67 (190)
T ss_dssp -CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEE
T ss_pred ceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCccc
Confidence 4667999999999999999999753 489999 76
No 19
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=97.68 E-value=2.4e-05 Score=59.43 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=61.7
Q ss_pred CcceEEEEEcCCCcEEEEEeCCC----CCCcc-CCC---CC-------------CceeecCChhhHHhhhhccC-CCccc
Q 029744 67 RRNVGICLINSSKKIFAASRLDI----PDSWQ-MPQ---VP-------------YWLTYDFPPEVREKLKHQWG-GDWKG 124 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~----~~aWQ-fPQ---t~-------------~WL~YDlP~~~~~~~~~~~~-~~y~G 124 (188)
.+.|+++|+|.+|+||+.+|... +|.|+ +|. .+ +-.-++....-...+. ... ..+.+
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~-~~~~~~~~~ 112 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLA-SFSPFQTTL 112 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEE-EECSSSSCC
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEE-EEeccCCCC
Confidence 77899999999999999999653 47899 998 00 0111111110000000 000 11112
Q ss_pred c-cceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCC---CCCHHHHHHHHHHhh
Q 029744 125 Q-AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV---DFKKPVYKEVFTVFT 184 (188)
Q Consensus 125 Q-kQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV---~FKR~VY~~vl~eF~ 184 (188)
+ ....|+.+. +.++.+ ...|..+++|++++++.+.+. ...+.+.+.+.+.|+
T Consensus 113 ~~~~~~f~~~~---~~~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~~~~~ 168 (171)
T 1q27_A 113 SSFMCVYELRS---DATPIF-----NPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYR 168 (171)
T ss_dssp SSEEEEEEEEC---CCCCCS-----CTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred ccEEEEEEEEE---CCcccc-----CchhhheEEEecHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 2 222233333 233433 245889999999999986543 456777777777664
No 20
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=97.65 E-value=0.00033 Score=49.90 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 69 NVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
.|+++|+|.+|+|++.+|.+ |.|+||.
T Consensus 4 ~~~~vi~~~~~~vLl~~r~~--g~w~~Pg 30 (126)
T 1vcd_A 4 GAGGVVFNAKREVLLLRDRM--GFWVFPK 30 (126)
T ss_dssp EEEEEEECTTSCEEEEECTT--SCEECCE
T ss_pred EEEEEEEcCCCEEEEEEECC--CCccCCc
Confidence 58999999999999999975 7999998
No 21
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=97.64 E-value=1e-05 Score=60.22 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=27.4
Q ss_pred CcceEEEEEcCCCcEEEEEeCCC--CCCccCCC
Q 029744 67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~--~~aWQfPQ 97 (188)
+..|++||+|.+|+||+.+|.+. .|.|.||.
T Consensus 18 ~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~Pg 50 (160)
T 1rya_A 18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPG 50 (160)
T ss_dssp EEEEEEEEECTTSCEEEEEECSSSSTTSEECCE
T ss_pred EEEEEEEEEcCCCEEEEEeccCCCCCCEEECCc
Confidence 56899999999999999999864 37899998
No 22
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=97.49 E-value=5.7e-05 Score=55.15 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCCC---CCCccCCC
Q 029744 65 GYRRNVGICLINSSKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
..+..|+++|+|.+|+||+.+|.+. +|.|.||.
T Consensus 6 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPg 41 (144)
T 3r03_A 6 PILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPG 41 (144)
T ss_dssp CEEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSE
T ss_pred ceeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCC
Confidence 3677889999999999999999864 37899997
No 23
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=97.49 E-value=0.00024 Score=53.40 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=26.6
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
.+..|++||+| +|+||+.+|.+ .|.|.+|.
T Consensus 5 ~~~~v~~vi~~-~~~vLL~~r~~-~g~w~lPg 34 (159)
T 3f6a_A 5 RHFTVSVFIVC-KDKVLLHLHKK-AKKMLPLG 34 (159)
T ss_dssp SCEEEEEEEEE-TTEEEEEECSS-SCCEECEE
T ss_pred ceEEEEEEEEE-CCEEEEEEcCC-CCeEECCc
Confidence 57788999999 79999999976 68999999
No 24
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=97.47 E-value=0.00014 Score=52.35 Aligned_cols=28 Identities=14% Similarity=0.408 Sum_probs=24.7
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
+..|++||+| +|+|++.+|.+ |.|.||.
T Consensus 4 ~~~~~~vi~~-~~~vLl~~r~~--~~w~~Pg 31 (134)
T 2pbt_A 4 EFSAGGVLFK-DGEVLLIKTPS--NVWSFPK 31 (134)
T ss_dssp EEEEEEEEEE-TTEEEEEECTT--SCEECCE
T ss_pred ceEEEEEEEE-CCEEEEEEeCC--CcEECCc
Confidence 4578999999 68999999976 8999998
No 25
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=97.41 E-value=0.00016 Score=53.32 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=27.1
Q ss_pred CCCcCceEeeChhhHhhcCCCCCHHHHHHHHHHh
Q 029744 150 KPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 183 (188)
Q Consensus 150 ~PEFd~WrWv~~~ell~~VV~FKR~VY~~vl~eF 183 (188)
..|.++++|++++++.+.......+..++++..+
T Consensus 103 ~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~ 136 (153)
T 2b0v_A 103 DTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDY 136 (153)
T ss_dssp CTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHH
T ss_pred CCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHH
Confidence 4689999999999999976566666777777665
No 26
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=97.37 E-value=8.7e-05 Score=54.32 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=27.2
Q ss_pred CCcceEEEEEc--CCCc--EEEEEeCCCCCCccCCC
Q 029744 66 YRRNVGICLIN--SSKK--IFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N--~~g~--Vfvg~R~d~~~aWQfPQ 97 (188)
-+..|++||+| ++|+ |++.+|...++.|+||.
T Consensus 8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~~~~w~~Pg 43 (139)
T 2yyh_A 8 PLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPG 43 (139)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEECSSSCSEECCE
T ss_pred CeEEEEEEEEEEcCCCcEEEEEEEecCCCCcEECcc
Confidence 36789999998 7898 99999987556699999
No 27
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=97.36 E-value=0.00032 Score=52.86 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCcEEEEEeCCC----CCCccCCC
Q 029744 68 RNVGICLINSSKKIFAASRLDI----PDSWQMPQ 97 (188)
Q Consensus 68 ~NVGivl~N~~g~Vfvg~R~d~----~~aWQfPQ 97 (188)
..|.++|++.+|+||+.+|... +|.|.||.
T Consensus 28 ~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPg 61 (165)
T 3oga_A 28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSG 61 (165)
T ss_dssp EEEEEEEEEETTEEEEEEECC------CCEECCC
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCc
Confidence 3455556677899999999854 27899998
No 28
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=97.33 E-value=0.00022 Score=53.41 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCCC---CCCccCCC
Q 029744 65 GYRRNVGICLINSSKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
.....|+++|+|.+|+||+.+|.+. +|.|.||.
T Consensus 27 ~~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~Pg 62 (158)
T 3hhj_A 27 SLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPG 62 (158)
T ss_dssp CEEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCE
T ss_pred ceEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCc
Confidence 3566788899999999999999854 27999997
No 29
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=97.32 E-value=0.00018 Score=52.63 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCcEEEEEeCCC---CCCccCCC
Q 029744 69 NVGICLINSSKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
.|+++|++.+|+||+.+|.+. +|.|.||.
T Consensus 23 ~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~Pg 54 (153)
T 3ees_A 23 PVVAGFLRKDGKILVGQRPENNSLAGQWEFPG 54 (153)
T ss_dssp EEEEEEEEETTEEEEEECCTTSTTTTCEECSE
T ss_pred EEEEEEEEECCEEEEEEeCCCCCCCCeEECCc
Confidence 677778888899999999864 37999998
No 30
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=97.29 E-value=0.00058 Score=53.64 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCCcceEEEEEcCCC-cEEEEEeCCCCCCccCCC---C-------------CCceeec-------CChhhHHh-h-hhcc
Q 029744 65 GYRRNVGICLINSSK-KIFAASRLDIPDSWQMPQ---V-------------PYWLTYD-------FPPEVREK-L-KHQW 118 (188)
Q Consensus 65 ~YR~NVGivl~N~~g-~Vfvg~R~d~~~aWQfPQ---t-------------~~WL~YD-------lP~~~~~~-~-~~~~ 118 (188)
.+...|+++|+|.+| +||+.+|.. .|.|.+|. . .+-.-++ .+..+... . ....
T Consensus 43 ~~h~~~~~vv~~~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 121 (197)
T 3fcm_A 43 IAHLTSSAFAVNKERNKFLMIHHNI-YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIK 121 (197)
T ss_dssp SEEEEEEEEEECTTSCEEEEEEETT-TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEE
T ss_pred CccEEEEEEEEECCCCEEEEEEecC-CCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccc
Confidence 366789999999887 999999975 68999999 0 0011111 11000000 0 0000
Q ss_pred CCCcccccc---eEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCC-CCHHHHHHHHHHhh
Q 029744 119 GGDWKGQAQ---KWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD-FKKPVYKEVFTVFT 184 (188)
Q Consensus 119 ~~~y~GQkQ---kWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~-FKR~VY~~vl~eF~ 184 (188)
.+.+..... .+|++.... +..+.++ .-|..+++|++++++.+.+.. --+++++++++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~ 185 (197)
T 3fcm_A 122 RGKYVSSHLHLNLTYLIECSE-DETLMLK-----EDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLK 185 (197)
T ss_dssp TTEEECCEEEEEEEEEEECCT-TSCCCCC-----C----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHH
T ss_pred cCcccCCceeEEEEEEEEeCC-CcccCCC-----cccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 011111122 445554432 2233332 458999999999999877543 33458888777654
No 31
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=97.29 E-value=0.0001 Score=56.77 Aligned_cols=32 Identities=3% Similarity=-0.087 Sum_probs=27.1
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC---CCCccCCC
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
.+..|+++++|.+|+|++.+|... +|.|+||.
T Consensus 40 ~~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~Pg 74 (182)
T 2yvp_A 40 PVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPA 74 (182)
T ss_dssp SCEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCE
T ss_pred cCCEEEEEEEcCCCEEEEEEeccCCCCCcEEEecc
Confidence 456899999999999999998642 36899998
No 32
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=97.23 E-value=7.5e-05 Score=63.29 Aligned_cols=94 Identities=10% Similarity=0.173 Sum_probs=51.9
Q ss_pred ceEEEEEcC-CCcEEEEEeCCCCCCccCCC----------------CCCceeecCChhhHHhhhhccCCCcccccceEEE
Q 029744 69 NVGICLINS-SKKIFAASRLDIPDSWQMPQ----------------VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFL 131 (188)
Q Consensus 69 NVGivl~N~-~g~Vfvg~R~d~~~aWQfPQ----------------t~~WL~YDlP~~~~~~~~~~~~~~y~GQkQkWFL 131 (188)
.||+||+|+ +|+|++.+|...+|.|.+|. ..+..-++... +. .+.......+.++....|+
T Consensus 103 ~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~-l~-~~~~~~~~~~~~~~~~~f~ 180 (271)
T 2a6t_A 103 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS-RI-NPNEFIDMTIRGQNVRLYI 180 (271)
T ss_dssp EEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT-TC-CTTCEEEEEETTEEEEEEE
T ss_pred eEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcee-ee-eeeeeccCCcCCceEEEEE
Confidence 568999997 49999999976568999998 01122222221 10 0000000123455555566
Q ss_pred EEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcC
Q 029744 132 LKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 168 (188)
Q Consensus 132 ~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~V 168 (188)
++....+..+.. ....|..+++|++++++.+..
T Consensus 181 ~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~ 213 (271)
T 2a6t_A 181 IPGISLDTRFES----RTRKEISKIEWHNLMDLPTFK 213 (271)
T ss_dssp ECCCCTTCCCC----------EEEEEEEEGGGSTTCC
T ss_pred EEEecCcccCCC----CCccceeEEEEEEHHHHHHHH
Confidence 554332222222 234699999999999998753
No 33
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=97.20 E-value=0.0006 Score=49.99 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=23.4
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC-----CCCccCCC
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI-----PDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~-----~~aWQfPQ 97 (188)
.+..|++||.| +|+||+.+|.+. +|.|.||.
T Consensus 5 ~~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPg 40 (140)
T 3gwy_A 5 SIEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPG 40 (140)
T ss_dssp CEEEEEEEEEE-TTEEEEEEC---------CCEECSE
T ss_pred EEEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCC
Confidence 56678888888 899999999863 46899998
No 34
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=97.03 E-value=0.0016 Score=47.39 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=26.1
Q ss_pred CCcceEEEEEcC-CCcEEEEEeCCCCCCccCCC
Q 029744 66 YRRNVGICLINS-SKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~-~g~Vfvg~R~d~~~aWQfPQ 97 (188)
.|..|++||+|+ +|+||+.+|. +|.|.||.
T Consensus 17 ~~~~~~~vi~~~~~~~vLl~~r~--~g~w~~Pg 47 (148)
T 2azw_A 17 TRYAAYIIVSKPENNTMVLVQAP--NGAYFLPG 47 (148)
T ss_dssp ECCEEEEECEEGGGTEEEEEECT--TSCEECSE
T ss_pred eeeEEEEEEECCCCCeEEEEEcC--CCCEeCCC
Confidence 577888999987 8999999994 48999998
No 35
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=97.03 E-value=0.00049 Score=53.52 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=27.1
Q ss_pred CCCcceEEEEEcCCC--cEEEEEeCCC----CCCccCCC
Q 029744 65 GYRRNVGICLINSSK--KIFAASRLDI----PDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g--~Vfvg~R~d~----~~aWQfPQ 97 (188)
++|..|++|++|.+| +|++.+|.+. +|.|.||.
T Consensus 32 ~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPg 70 (194)
T 1nqz_A 32 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPG 70 (194)
T ss_dssp -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSE
T ss_pred CCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCc
Confidence 588888999889999 9999999752 48999998
No 36
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=96.96 E-value=0.0018 Score=48.94 Aligned_cols=33 Identities=6% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCcceEEEEEcCC-CcEEEEEeCCCC--CCccCCC
Q 029744 65 GYRRNVGICLINSS-KKIFAASRLDIP--DSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~-g~Vfvg~R~d~~--~aWQfPQ 97 (188)
..+..|+++|+|++ |+||+.+|.+.. |.|.||.
T Consensus 8 ~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPg 43 (161)
T 3exq_A 8 PVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPG 43 (161)
T ss_dssp CEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCC
T ss_pred CceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccc
Confidence 47889999999988 899999998532 5677998
No 37
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=96.95 E-value=0.0017 Score=54.77 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=63.2
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCC--CCccCCC-------C---------CCceeecCChh-hHHhh--hhccCC---Cc
Q 029744 67 RRNVGICLINSSKKIFAASRLDIP--DSWQMPQ-------V---------PYWLTYDFPPE-VREKL--KHQWGG---DW 122 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~~--~aWQfPQ-------t---------~~WL~YDlP~~-~~~~~--~~~~~~---~y 122 (188)
+..|+++|+ .+|+||+.+|.+.+ |.|.+|. + .+..-++.... +...+ ...+.. ..
T Consensus 208 ~~~v~~vv~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 286 (352)
T 2qjt_B 208 FVTVDALVI-VNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSV 286 (352)
T ss_dssp EEEEEEEEE-ETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCT
T ss_pred ceEEEEEEE-ECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCC
Confidence 357888888 68999999998643 7899999 0 11112222211 00000 000100 01
Q ss_pred ccc-cceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeCh-hhHhhc---CCCCCHHHHHHHHHHh
Q 029744 123 KGQ-AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSP-EQILER---AVDFKKPVYKEVFTVF 183 (188)
Q Consensus 123 ~GQ-kQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~-~ell~~---VV~FKR~VY~~vl~eF 183 (188)
.|+ ....|+++..+.+..+.+ ....|.++++|+++ +++.+. +.+-=+.+.+++++.+
T Consensus 287 ~~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l 348 (352)
T 2qjt_B 287 RGRTISHVGLFVFDQWPSLPEI----NAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEEC 348 (352)
T ss_dssp TSEEEEEEEEEEECSCSSCCCC----CCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHT
T ss_pred CccEEEEEEEEEEeCCCCCCcc----CCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHh
Confidence 222 234567776543322222 23468999999999 999884 5555567777776654
No 38
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=96.95 E-value=0.0015 Score=52.02 Aligned_cols=29 Identities=10% Similarity=0.431 Sum_probs=23.5
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
+..|+++|+| +|+||+.+|.+ .|.|.||.
T Consensus 68 ~~~v~~vv~~-~~~vLLv~r~~-~g~w~lPg 96 (205)
T 3q1p_A 68 KVDIRAVVFQ-NEKLLFVKEKS-DGKWALPG 96 (205)
T ss_dssp EEEEEEEEEE-TTEEEEEEC----CCEECSE
T ss_pred cceEEEEEEE-CCEEEEEEEcC-CCcEECCc
Confidence 4788889998 79999999975 68999998
No 39
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=96.94 E-value=0.00018 Score=54.85 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC---CCCccCCC---CCC-------------ceeecCChhhHHhhhhc-cCCCcccc
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI---PDSWQMPQ---VPY-------------WLTYDFPPEVREKLKHQ-WGGDWKGQ 125 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ---t~~-------------WL~YDlP~~~~~~~~~~-~~~~y~GQ 125 (188)
.|..|+++++| +|+|++.+|... +|.|.||. .++ -.-+ +..+. .+... ....+..+
T Consensus 33 ~~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl--~~~~~-~l~~~~~~~~~~~~ 108 (170)
T 1v8y_A 33 HKPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL--SGDLT-YLFSYFVSPGFTDE 108 (170)
T ss_dssp ECCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE--EEEEE-EEEEEESCTTTBCC
T ss_pred cCCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC--CcCce-eeEEEecCCCcccc
Confidence 56799999999 999999987542 47899999 111 1001 00000 00000 01122334
Q ss_pred cceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcC
Q 029744 126 AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 168 (188)
Q Consensus 126 kQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~V 168 (188)
....|+.+..+. ..+.+ ...|..+++|++++++.+.+
T Consensus 109 ~~~~f~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~~ 145 (170)
T 1v8y_A 109 KTHVFLAENLKE-VEAHP-----DEDEAIEVVWMRPEEALERH 145 (170)
T ss_dssp EEEEEEEEEEEE-CC-------------CEEEEECHHHHHHHH
T ss_pred EEEEEEEEeccc-cCCCC-----CCCceEEEEEEEHHHHHHHH
Confidence 445555554321 22222 34688999999999998764
No 40
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=96.85 E-value=0.0012 Score=49.11 Aligned_cols=95 Identities=11% Similarity=-0.133 Sum_probs=48.7
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC---CCCccCCC-------C---------CCceeecCChhhHHhhhhc-cCCCcccc
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI---PDSWQMPQ-------V---------PYWLTYDFPPEVREKLKHQ-WGGDWKGQ 125 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ-------t---------~~WL~YDlP~~~~~~~~~~-~~~~y~GQ 125 (188)
++..|+|+++|++|+|++.+|... ++.|.||. + .+..-++... + ..+... ....+..+
T Consensus 4 ~~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~-~-~~l~~~~~~~~~~~~ 81 (145)
T 2w4e_A 4 GPRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASE-W-VPLPGFYPQPSISGV 81 (145)
T ss_dssp CCEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSE-E-EECCCBBSCTTTCCC
T ss_pred eCCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCe-E-EEEecCcCCCCccCc
Confidence 567899999999999976654321 24899998 0 0111111110 0 000000 01122334
Q ss_pred cceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcC
Q 029744 126 AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 168 (188)
Q Consensus 126 kQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~V 168 (188)
...+|+.+... ...+.+ ...|..+++|++++++.+.+
T Consensus 82 ~~~~f~~~~~~-~~~~~~-----~~~E~~~~~w~~~~el~~~~ 118 (145)
T 2w4e_A 82 VFYPLLALGVT-LGAAQL-----EDTETIERVVLPLAEVYRML 118 (145)
T ss_dssp EEEEEEEEEEE-EC-------------CEEEEEEEHHHHHHHH
T ss_pred eEEEEEEEecc-cCCCCC-----CCCCeEEEEEEeHHHHHHHH
Confidence 55666665322 112222 34688999999999998654
No 41
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=96.78 E-value=0.00042 Score=51.49 Aligned_cols=30 Identities=3% Similarity=0.114 Sum_probs=26.4
Q ss_pred CCCCcceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 64 ~~YR~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
..||..|+++|++ +|+||+.+| +|.|+||.
T Consensus 16 ~~~~~~~~~ii~~-~~~vLl~~r---~~~w~lPg 45 (154)
T 2pqv_A 16 TVFGVRATALIVQ-NHKLLVTKD---KGKYYTIG 45 (154)
T ss_dssp EEEEEEEEECCEE-TTEEEEEEE---TTEEECEE
T ss_pred ceEeEEEEEEEEE-CCEEEEEec---CCeEECcc
Confidence 3488899999997 699999999 68999998
No 42
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=96.76 E-value=0.0018 Score=50.57 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=25.5
Q ss_pred CcceEEEEEcCCCcEEEEEeCCC--CCCccCCC
Q 029744 67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~--~~aWQfPQ 97 (188)
+..|++||++ +|+||+.+|... .|.|.||.
T Consensus 40 ~~~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPg 71 (189)
T 3cng_A 40 KVIVGCIPEW-ENKVLLCKRAIAPYRGKWTLPA 71 (189)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSTTCEECSE
T ss_pred ceEEEEEEEe-CCEEEEEEccCCCCCCeEECce
Confidence 5678888888 899999999763 47899998
No 43
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=96.75 E-value=0.0024 Score=46.02 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCcEEEEEeCCC---CCCccCCC
Q 029744 69 NVGICLINSSKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
.|+++|++.+|+||+.+|.+. +|.|+||.
T Consensus 10 ~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPg 41 (140)
T 2rrk_A 10 EVVAAIIERDGKILLAQRPAQSDQAGLWEFAG 41 (140)
T ss_dssp EEEEEEEEETTEEEEEECCSSCSCCCCEECCE
T ss_pred eEEEEEEEcCCEEEEEEcCCCCCCCCEEECCc
Confidence 344455588999999999653 38999998
No 44
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=96.62 E-value=0.00069 Score=48.14 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=23.2
Q ss_pred CcceEEEEEcCCCcEEEEEeCCC---CCCccCCC
Q 029744 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
|..|+ +|+|.+|+|++.+|.+. +|.|.||.
T Consensus 5 ~~~~~-ii~~~~~~vLl~~r~~~~~~~g~w~~Pg 37 (129)
T 1mut_A 5 QIAVG-IIRNENNEIFITRRAADAHMANKLEFPG 37 (129)
T ss_dssp ECCCE-ECEETTTEEEEEECSSCCSSSCCEECCC
T ss_pred EEEEE-EEEecCCEEEEEEeCCCCCCCCeEECCc
Confidence 33444 55688999999999864 38999998
No 45
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=96.53 E-value=0.004 Score=52.01 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=24.5
Q ss_pred CcceEEEEEcCCCcEEEEEeCCC--CCCccCCC
Q 029744 67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~--~~aWQfPQ 97 (188)
+..|+++|+ .+|+||+.+|.+. +|.|.+|.
T Consensus 203 ~~~v~~vi~-~~~~vLL~~r~~~~~~g~w~lPg 234 (341)
T 2qjo_A 203 FITTDAVVV-QAGHVLMVRRQAKPGLGLIALPG 234 (341)
T ss_dssp EEEEEEEEE-ETTEEEEEECCSSSSTTCEECSE
T ss_pred ceEEEEEEE-eCCEEEEEEecCCCCCCeEECCC
Confidence 357888888 5799999999764 37899999
No 46
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=96.50 E-value=0.0032 Score=50.17 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=24.1
Q ss_pred cceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 68 ~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
..|+++|+|+ |+||+.+|. .|.|.||.
T Consensus 71 ~~v~~vv~~~-~~vLLvrr~--~g~w~lPg 97 (206)
T 3o8s_A 71 LDTRAAIFQE-DKILLVQEN--DGLWSLPG 97 (206)
T ss_dssp EEEEEEEEET-TEEEEEECT--TSCEECSE
T ss_pred ccEEEEEEEC-CEEEEEEec--CCeEECCe
Confidence 6788899985 999999997 68999998
No 47
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=96.43 E-value=0.0036 Score=48.48 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC--CCCccCCC
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~--~~aWQfPQ 97 (188)
-+..++++|++.+|+||+.+|... .|.|+||.
T Consensus 23 ~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPg 56 (176)
T 3q93_A 23 ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFG 56 (176)
T ss_dssp CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEE
T ss_pred CCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECce
Confidence 456777788888999999999653 47999998
No 48
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=96.39 E-value=0.027 Score=49.30 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCCC---CCCccCCC
Q 029744 65 GYRRNVGICLINSSKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
..|..|++||+|.+|+||+.+|.+. .|.|.||.
T Consensus 238 ~~~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPG 273 (369)
T 3fsp_A 238 KQVPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPS 273 (369)
T ss_dssp EEEEEEEEEEECSSSEEEEEECCSSSTTTTCEECCE
T ss_pred ceEEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCC
Confidence 3567788999999999999999864 37899998
No 49
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=96.31 E-value=0.0047 Score=47.77 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=51.7
Q ss_pred cceEEEEEcCCCcEEEEEeCCCCCCccCCC---CCC-------------ceeecCChhhHHhhhhccCCCcccccceEEE
Q 029744 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQ---VPY-------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFL 131 (188)
Q Consensus 68 ~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ---t~~-------------WL~YDlP~~~~~~~~~~~~~~y~GQkQkWFL 131 (188)
..|+++|++.+|+||+.+|. +|.|.+|. .++ -.-.+... + ..+.. . .+.+.....|+
T Consensus 16 ~~~~~~ii~~~~~vLL~~r~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~-~-~~l~~-~--~~~~~~~~~f~ 88 (163)
T 3f13_A 16 ARRATAIIEMPDGVLVTASR--GGRYNLPGGKANRGELRSQALIREIREETGLRINS-M-LYLFD-H--ITPFNAHKVYL 88 (163)
T ss_dssp EEEEEEECEETTEEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCE-E-EEEEE-E--ECSSEEEEEEE
T ss_pred eEEEEEEEEeCCEEEEEEEC--CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccce-e-EEEEE-E--ecCCeEEEEEE
Confidence 45666677778899999995 58999999 000 00000000 0 00000 0 01113334455
Q ss_pred EEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCCCCHHHHHHHHHHhh
Q 029744 132 LKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184 (188)
Q Consensus 132 ~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~FKR~VY~~vl~eF~ 184 (188)
.++.| ++. ..+|-++++|++.+.....+.+--+.+.+.+++...
T Consensus 89 ~~~~~---~~~------~~~E~~~~~W~~~~~~~~~l~~~~~~il~~~~~~~~ 132 (163)
T 3f13_A 89 CIAQG---QPK------PQNEIERIALVSSPDTDMDLFVEGRAILRRYARLRN 132 (163)
T ss_dssp EEC-C---CCC------CCTTCCEEEEESSTTCSSCBCHHHHHHHHHHHHHTT
T ss_pred EEECC---cCc------cCCCceEEEEECcccccCCCCHHHHHHHHHHHHhhh
Confidence 54432 122 234999999999555555566666677776665443
No 50
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=96.25 E-value=0.0027 Score=54.01 Aligned_cols=101 Identities=10% Similarity=0.026 Sum_probs=57.2
Q ss_pred EEEEcCCCcEEEEEeCCC-CCCccCCC---CCC-------------ceeecCChhhHHhhhhccCCCcccccceEEEEEE
Q 029744 72 ICLINSSKKIFAASRLDI-PDSWQMPQ---VPY-------------WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKF 134 (188)
Q Consensus 72 ivl~N~~g~Vfvg~R~d~-~~aWQfPQ---t~~-------------WL~YDlP~~~~~~~~~~~~~~y~GQkQkWFL~rf 134 (188)
|++++.+|+||+++|... .|.|.+|. .++ -.-++.. .+ ..+ ....-.|..+.-..|+.+.
T Consensus 144 iv~v~~~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~-~~-~~~-~~~~~~~~~~~~~~f~a~~ 220 (269)
T 1vk6_A 144 IVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVK-NL-RYV-TSQPWPFPQSLMTAFMAEY 220 (269)
T ss_dssp EEEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEE-EE-EEE-EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEeCCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceee-eE-EEE-EEEecCCCCEEEEEEEEEE
Confidence 455667899999999764 37999998 110 0000000 00 000 0000023334445566665
Q ss_pred cCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCCCCHHHHHHHHHHhh
Q 029744 135 TGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 184 (188)
Q Consensus 135 ~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~FKR~VY~~vl~eF~ 184 (188)
.+ .++.++ ..|..+++|++++++.+. ++...+.+++++.+.
T Consensus 221 ~~--~~~~~~-----~~E~~~~~W~~~~el~~l--~~~~si~~~li~~~l 261 (269)
T 1vk6_A 221 DS--GDIVID-----PKELLEANWYRYDDLPLL--PPPGTVARRLIEDTV 261 (269)
T ss_dssp EE--CCCCCC-----TTTEEEEEEEETTSCCSC--CCTTSHHHHHHHHHH
T ss_pred CC--CCcCCC-----CcceEEEEEEEHHHhhhc--ccCcHHHHHHHHHHH
Confidence 43 334432 458999999999999874 666666666666654
No 51
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.06 E-value=0.0035 Score=54.10 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=56.3
Q ss_pred cCCCcEEEEEeCCCCCCccCCC-----------------------------CCCceeecCChhhHHhhhhccCCCccccc
Q 029744 76 NSSKKIFAASRLDIPDSWQMPQ-----------------------------VPYWLTYDFPPEVREKLKHQWGGDWKGQA 126 (188)
Q Consensus 76 N~~g~Vfvg~R~d~~~aWQfPQ-----------------------------t~~WL~YDlP~~~~~~~~~~~~~~y~GQk 126 (188)
|++++||+.+|.+ .|.|.||. .-..+.|.++..-. +..+...+....+.
T Consensus 35 ~~~~~vLLv~r~~-~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~-~~~~~~~~~~~~~~ 112 (364)
T 3fjy_A 35 LDSIEVCIVHRPK-YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGK-KTRHSHDCTADTKH 112 (364)
T ss_dssp HTTEEEEEEEETT-TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC----------------------C
T ss_pred CCceEEEEEEcCC-CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCc-ccccccccccCceE
Confidence 5667999999965 48999999 00123344443210 00001122345677
Q ss_pred ceEEEEEEcCCCCeeee----cCC-CCCCCCcCceEeeChhhHhhcCC-CCCHHHHHHHHHHh
Q 029744 127 QKWFLLKFTGKEEEINL----LGD-KSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 183 (188)
Q Consensus 127 QkWFL~rf~G~ds~InL----~~~-~~~~PEFd~WrWv~~~ell~~VV-~FKR~VY~~vl~eF 183 (188)
-.+|+.+..+.+..+.| .+. .....|.++++|++++++.+.+. +--|.+.+++++.+
T Consensus 113 ~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l 175 (364)
T 3fjy_A 113 TLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRV 175 (364)
T ss_dssp EEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHh
Confidence 88899888765432322 111 12346999999999999998775 33455555555544
No 52
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=95.75 E-value=0.011 Score=43.91 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=22.9
Q ss_pred CcceEEEEEcC---CCcEEEEEeCCC---CCCccCCC
Q 029744 67 RRNVGICLINS---SKKIFAASRLDI---PDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~---~g~Vfvg~R~d~---~~aWQfPQ 97 (188)
|..+.+||.+. +|+||+.+|.+. .|.|.||.
T Consensus 19 ~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~Pg 55 (155)
T 1x51_A 19 ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPS 55 (155)
T ss_dssp EEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCE
T ss_pred EEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCc
Confidence 44555566665 689999999764 37899998
No 53
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=95.68 E-value=0.0072 Score=48.03 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=50.0
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC---CCCccCCC---C-CCceeecCChhhHHh---------------hhhc-cCCCc
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI---PDSWQMPQ---V-PYWLTYDFPPEVREK---------------LKHQ-WGGDW 122 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ---t-~~WL~YDlP~~~~~~---------------~~~~-~~~~y 122 (188)
.+..|+|+++|.+|+|++.+|... .+.|.||. . ++- =|.+...| +... -..++
T Consensus 42 ~~~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gE----s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 117 (207)
T 1mk1_A 42 HFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGE----PPHLTAARELREEVGLQASTWQVLVDLDTAPGF 117 (207)
T ss_dssp ECCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTC----CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTT
T ss_pred CCCEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCC----CHHHHHHHHHHHHHCCcccccEEEEEEEcCCCc
Confidence 346889999999999999997642 35899998 2 210 00000000 0000 01122
Q ss_pred ccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCC
Q 029744 123 KGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 170 (188)
Q Consensus 123 ~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~ 170 (188)
..+....|+.+..+...... ....-|..+++|++++++.+.+-.
T Consensus 118 ~~~~~~~f~~~~~~~~~~~~----~~~~~E~~~~~Wv~~~el~~~~~~ 161 (207)
T 1mk1_A 118 SDESVRVYLATGLREVGRPE----AHHEEADMTMGWYPIAEAARRVLR 161 (207)
T ss_dssp BCCCEEEEEEEEEEECCC--------------CEEEEEHHHHHHHHHT
T ss_pred cccEEEEEEEEccccCCCCC----CCCCCceEEEEEEEHHHHHHHHHc
Confidence 33445566665433211111 022458999999999999877643
No 54
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=95.59 E-value=0.0091 Score=44.03 Aligned_cols=31 Identities=3% Similarity=-0.081 Sum_probs=20.5
Q ss_pred CCcceEEEEEcCCCc----EEEEEeCCCC-CCccCCC
Q 029744 66 YRRNVGICLINSSKK----IFAASRLDIP-DSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~----Vfvg~R~d~~-~aWQfPQ 97 (188)
.+..|++||+| +|+ |++.+|.+.+ ..|.+|.
T Consensus 7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~~~~gw~lPg 42 (155)
T 2b06_A 7 TILTNICLIED-LETQRVVMQYRAPENNRWSGYAFPG 42 (155)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEC-----CCEEECCC
T ss_pred cEEEEEEEEEE-CCCCeEEEEEEECCCCCCCCEeccc
Confidence 56778888888 666 9999997642 1279998
No 55
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=95.43 E-value=0.006 Score=49.75 Aligned_cols=31 Identities=6% Similarity=0.103 Sum_probs=26.0
Q ss_pred CcceEEEEE---cCCCcEEEEEeCCC--CCCccCCC
Q 029744 67 RRNVGICLI---NSSKKIFAASRLDI--PDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~---N~~g~Vfvg~R~d~--~~aWQfPQ 97 (188)
+..|++||+ |.+|+|++.+|.+. .|.|.+|.
T Consensus 13 ~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPG 48 (226)
T 2fb1_A 13 YLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMG 48 (226)
T ss_dssp EEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEE
T ss_pred eEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCe
Confidence 457888998 78899999999764 37899998
No 56
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=95.41 E-value=0.0067 Score=47.64 Aligned_cols=27 Identities=7% Similarity=0.278 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 69 NVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
-|+++|++ +|+||+.+|.+ .|.|.+|.
T Consensus 6 v~~~vi~~-~~~vLL~~r~~-~g~W~lPG 32 (188)
T 3fk9_A 6 VTNCIVVD-HDQVLLLQKPR-RGWWVAPG 32 (188)
T ss_dssp EEEEEEEE-TTEEEEEECTT-TCCEECCE
T ss_pred EEEEEEEE-CCEEEEEEeCC-CCeEECCe
Confidence 44555554 79999999965 68999998
No 57
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=94.99 E-value=0.02 Score=44.23 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=26.6
Q ss_pred CCCcCceEeeChhhHhhc-CCCCCHHHHHHHHHHhhh
Q 029744 150 KPEFGEWKWMSPEQILER-AVDFKKPVYKEVFTVFTP 185 (188)
Q Consensus 150 ~PEFd~WrWv~~~ell~~-VV~FKR~VY~~vl~eF~p 185 (188)
..|-.+++|++++++.+. +.+--+.+.+++++.++.
T Consensus 138 ~~E~~~~~W~~~~el~~~~l~~~~~~il~~a~~~l~~ 174 (187)
T 3i9x_A 138 GDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAITE 174 (187)
T ss_dssp STTTTTEEEEEHHHHTTSCBSTTHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEeHHHcccCCCCccHHHHHHHHHHHHHh
Confidence 458889999999999975 444556677777766543
No 58
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=94.69 E-value=0.019 Score=50.03 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred CCcceEEEEEcCCC---cEEEEEeCCCC----CCc-cCCC----------------------CC----------Cceeec
Q 029744 66 YRRNVGICLINSSK---KIFAASRLDIP----DSW-QMPQ----------------------VP----------YWLTYD 105 (188)
Q Consensus 66 YR~NVGivl~N~~g---~Vfvg~R~d~~----~aW-QfPQ----------------------t~----------~WL~YD 105 (188)
+...|=|.++|.+| ++|+.||+..+ |-| +++. .+ +.++|.
T Consensus 117 ~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~ 196 (300)
T 3dup_A 117 RAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYC 196 (300)
T ss_dssp CEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEE
Confidence 67889999999998 99999998764 667 7776 00 122332
Q ss_pred CChhhHHhhhhccCCCcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCC---CCCHHHHHHHHHH
Q 029744 106 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV---DFKKPVYKEVFTV 182 (188)
Q Consensus 106 lP~~~~~~~~~~~~~~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV---~FKR~VY~~vl~e 182 (188)
.+.. .++ +...-|++.+.-+ .++.+. ....|.++++|++++|+.+.+- .||-....-++.-
T Consensus 197 ~~~~----------~G~--~~E~~~vy~~~l~-~~~~p~---~~~~EV~~~~~v~~~El~~~l~~pg~F~p~~~lV~ldf 260 (300)
T 3dup_A 197 MESP----------AGI--KPDTLFLYDLALP-EDFRPH---NTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVIDF 260 (300)
T ss_dssp EEET----------TEE--EEEEEEEEEEECC-TTCCCC---CTTSSEEEEEEEEHHHHHHHHHHCCCBCTTHHHHHHHH
T ss_pred EecC----------CCe--EEEEEEEEEEEec-CCCcCC---CCchHhheEEEECHHHHHHHHhcCCCcCccHHHHHHHH
Confidence 2210 011 2223334333221 223222 2356999999999999988775 6998888887776
Q ss_pred hh
Q 029744 183 FT 184 (188)
Q Consensus 183 F~ 184 (188)
|.
T Consensus 261 l~ 262 (300)
T 3dup_A 261 AI 262 (300)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=94.60 E-value=0.03 Score=44.50 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=29.3
Q ss_pred CCCCCcceEEEEE--cCCCcEEEEEeCCCCCCccCCC
Q 029744 63 PEGYRRNVGICLI--NSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 63 ~~~YR~NVGivl~--N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
..+|+..|++||+ |.+|+||+.+|...+|.|.+|.
T Consensus 36 ~~~~~~~~~~vi~~~~~~~~vLLv~r~~~~g~W~lPg 72 (194)
T 2fvv_A 36 GDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPG 72 (194)
T ss_dssp TTSCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSE
T ss_pred cCCccccEEEEEEEECCCCEEEEEEEeCCCCcEECCC
Confidence 4568888888887 4579999999976568999998
No 60
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=94.25 E-value=0.052 Score=42.59 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=52.2
Q ss_pred CcceEEEEEcC-CCcEEEEEeCC---------CCCCccCCC---C------------CCceeecCChhhHHhhhh-ccCC
Q 029744 67 RRNVGICLINS-SKKIFAASRLD---------IPDSWQMPQ---V------------PYWLTYDFPPEVREKLKH-QWGG 120 (188)
Q Consensus 67 R~NVGivl~N~-~g~Vfvg~R~d---------~~~aWQfPQ---t------------~~WL~YDlP~~~~~~~~~-~~~~ 120 (188)
...|+|+++|. +|+|++.++.. ..+.|.||. . .+-.-++.. .+ ..+.. ....
T Consensus 45 ~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~vegE~~~~aa~REl~EEtG~~~~-~~-~~l~~~~~~~ 122 (191)
T 3o6z_A 45 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVG-EV-RKLFELYMSP 122 (191)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECCSSCHHHHHHHHHHHHC-CCCS-CE-EEEEEEESCT
T ss_pred CCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeCCCCHHHHHHHHHHHHhCCccC-cE-EEEEEEEeCC
Confidence 45788999995 69999988763 346899998 1 001111110 00 00000 0112
Q ss_pred CcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcC
Q 029744 121 DWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 168 (188)
Q Consensus 121 ~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~V 168 (188)
.+.++....|+.+.... ..+... .....|..+++|++++++.+.+
T Consensus 123 ~~~~~~~~~f~~~~~~~-~~~~~~--~~~~~E~~~~~w~~~~el~~~~ 167 (191)
T 3o6z_A 123 GGVTELIHFFIAEYSDN-QRANAG--GGVEDEAIEVLELPFSQALEMI 167 (191)
T ss_dssp TTBCCEEEEEEEECCTT-CC----------CCSSEEEEEEHHHHHHHH
T ss_pred CccCcEEEEEEEEEccc-ccccCC--CCCCCcEEEEEEEEHHHHHHHH
Confidence 34555666666665432 122211 1125699999999999998764
No 61
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=93.56 E-value=0.058 Score=43.06 Aligned_cols=97 Identities=7% Similarity=-0.052 Sum_probs=50.5
Q ss_pred cceEEEEEc-CCCcEEEEEeC--CC------CCCccCCC---CC-------------CceeecCChhhHHhhhh-ccCCC
Q 029744 68 RNVGICLIN-SSKKIFAASRL--DI------PDSWQMPQ---VP-------------YWLTYDFPPEVREKLKH-QWGGD 121 (188)
Q Consensus 68 ~NVGivl~N-~~g~Vfvg~R~--d~------~~aWQfPQ---t~-------------~WL~YDlP~~~~~~~~~-~~~~~ 121 (188)
..|+|+++| ++|+|++.++. +. ++.|.+|. .+ +-.-|+.- .+. .+.. ...++
T Consensus 58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~-~~~-~l~~~~~~~g 135 (209)
T 1g0s_A 58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVK-RTK-PVLSFLASPG 135 (209)
T ss_dssp CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCC-CEE-EEEEEESCTT
T ss_pred CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccC-cEE-EeEEEecCCC
Confidence 578888899 57999887643 32 24699998 00 11111110 000 0000 01123
Q ss_pred cccccceEEEEEEcCCC-CeeeecCCCCCCCCcCceEeeChhhHhhcCC
Q 029744 122 WKGQAQKWFLLKFTGKE-EEINLLGDKSEKPEFGEWKWMSPEQILERAV 169 (188)
Q Consensus 122 y~GQkQkWFL~rf~G~d-s~InL~~~~~~~PEFd~WrWv~~~ell~~VV 169 (188)
+..+....|+.+..... ..... ..++.|+.+++|++++++.+.+-
T Consensus 136 ~~~~~~~~f~a~~~~~~~~~~~~---~~~e~E~~~~~w~~~~el~~~i~ 181 (209)
T 1g0s_A 136 GTSERSSIMVGEVDATTASGIHG---LADENEDIRVHVVSREQAYQWVE 181 (209)
T ss_dssp TBCCEEEEEEEECCGGGCC-----------CCSCEEEEEEHHHHHHHHH
T ss_pred ccCcEEEEEEEEEccccccCCCC---CCCCCcEEEEEEEEHHHHHHHHH
Confidence 44556666776653321 11111 12456899999999999987654
No 62
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=93.56 E-value=0.04 Score=41.11 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=24.5
Q ss_pred cceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 68 ~NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
..|++||+| +|+||+.+|.+ .|.|.||.
T Consensus 2 ~~~~~vi~~-~~~vLL~~r~~-~g~W~lPg 29 (156)
T 1k2e_A 2 IVTSGVLVE-NGKVLLVKHKR-LGVYIYPG 29 (156)
T ss_dssp EEEEEECEE-TTEEEEEECTT-TCSEECSE
T ss_pred eEEEEEEEE-CCEEEEEEEcC-CCcEECCe
Confidence 457888898 99999999976 68999999
No 63
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=93.05 E-value=0.095 Score=41.48 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=52.1
Q ss_pred CcceEEEEEcCCCcEEEEEeCCC---CCCccCCC---CC-------------CceeecCChhhHHhhhh-ccCCCccccc
Q 029744 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQ---VP-------------YWLTYDFPPEVREKLKH-QWGGDWKGQA 126 (188)
Q Consensus 67 R~NVGivl~N~~g~Vfvg~R~d~---~~aWQfPQ---t~-------------~WL~YDlP~~~~~~~~~-~~~~~y~GQk 126 (188)
+..|+|+++|++ +|++.+|... ++.|.||. .+ +-.-|+.- .+ ..+.. .....+.++.
T Consensus 49 ~~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~-~~-~~l~~~~~~~~~~~~~ 125 (198)
T 1vhz_A 49 REAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGAN-DL-TFLKKLSMAPSYFSSK 125 (198)
T ss_dssp CCEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEE-EE-EEEEEEECCTTTCCCE
T ss_pred CCEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcC-ce-EEEEEEeCCCCccCcE
Confidence 346777778887 9999987532 24799998 10 01111100 00 00000 0012334455
Q ss_pred ceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcCCC
Q 029744 127 QKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 170 (188)
Q Consensus 127 QkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~VV~ 170 (188)
...|+.+.... ..+. ....|+.+.+|++++++.+.+-.
T Consensus 126 ~~~f~a~~~~~-~~~~-----~~~~E~~~~~w~~~~el~~~~~~ 163 (198)
T 1vhz_A 126 MNIVVAQDLYP-ESLE-----GDEPEPLPQVRWPLAHMMDLLED 163 (198)
T ss_dssp EEEEEEEEEEE-CCCC-----CCCSSCCCEEEEEGGGGGGGGGC
T ss_pred EEEEEEEeCCc-ccCC-----CCCCceEEEEEEEHHHHHHHHHc
Confidence 56666654321 1111 24679999999999999987654
No 64
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=92.65 E-value=0.12 Score=40.98 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=33.6
Q ss_pred CcccccceEEEEEEcCCCCeeeecCC-CCCCCCcCceEeeChhhHhhcCCCCCH
Q 029744 121 DWKGQAQKWFLLKFTGKEEEINLLGD-KSEKPEFGEWKWMSPEQILERAVDFKK 173 (188)
Q Consensus 121 ~y~GQkQkWFL~rf~G~ds~InL~~~-~~~~PEFd~WrWv~~~ell~~VV~FKR 173 (188)
++..+....|+++....+.+ ++.+. ..+.-|+.+++|++++++.+.+.++.+
T Consensus 137 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~ 189 (212)
T 2dsc_A 137 GLSNCTIHIVTVTINGDDAE-NARPKPKPGDGEFVEVISLPKNDLLQRLDALVA 189 (212)
T ss_dssp TTBCCEEEEEEEEEETTSGG-GSSCCCCCCTTCCCEEEEEEGGGHHHHHHHHHH
T ss_pred CccCceEEEEEEEEeCcccc-ccCCCCCCCCCceEEEEEEEHHHHHHHHHhccc
Confidence 45667778888777554321 11000 123569999999999999988775544
No 65
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=92.11 E-value=0.13 Score=42.78 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.7
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC----CCCccCCC
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI----PDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~----~~aWQfPQ 97 (188)
+.+.|+++|+|++|+||+.+|... +|.|.+|-
T Consensus 69 ~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~ 104 (246)
T 2pny_A 69 LHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSC 104 (246)
T ss_dssp CEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSE
T ss_pred EEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEecc
Confidence 778899999999999999999753 47899885
No 66
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=92.07 E-value=0.13 Score=42.48 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=27.8
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCC----CCCccCCC
Q 029744 66 YRRNVGICLINSSKKIFAASRLDI----PDSWQMPQ 97 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d~----~~aWQfPQ 97 (188)
+.+.|+|+|+|++|+||+.+|... +|.|.+|.
T Consensus 58 ~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~ 93 (235)
T 2dho_A 58 LHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTC 93 (235)
T ss_dssp CEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSE
T ss_pred eEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEecc
Confidence 778999999999999999999753 47899985
No 67
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=91.38 E-value=0.084 Score=43.78 Aligned_cols=39 Identities=5% Similarity=0.139 Sum_probs=28.2
Q ss_pred ccCCCCCCCCcceEEEEEcCCCcEEEEEeCCCC------CCccC-CC
Q 029744 58 SMDAPPEGYRRNVGICLINSSKKIFAASRLDIP------DSWQM-PQ 97 (188)
Q Consensus 58 ~~~~~~~~YR~NVGivl~N~~g~Vfvg~R~d~~------~aWQf-PQ 97 (188)
.|+.++ .|+.-+.+||++.+|+||+.+|.+.+ |.|-+ |.
T Consensus 59 ~~e~d~-~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPG 104 (211)
T 3e57_A 59 EAEYDE-TTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIG 104 (211)
T ss_dssp HHTTCT-TEEEEEEEEEEEETTEEEEEEC------------CBSSEE
T ss_pred ccccCC-cccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccc
Confidence 555555 39999999999999999999998643 57888 76
No 68
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=90.32 E-value=0.034 Score=45.63 Aligned_cols=47 Identities=21% Similarity=0.126 Sum_probs=26.5
Q ss_pred CcccccceEEEEEEcCCCCeeeecCCCCCCCCcCceEeeChhhHhhcC
Q 029744 121 DWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 168 (188)
Q Consensus 121 ~y~GQkQkWFL~rf~G~ds~InL~~~~~~~PEFd~WrWv~~~ell~~V 168 (188)
++.++....|+.+..+.. .+...+...+..|+.+++|++++++.+++
T Consensus 143 g~~~~~~~~f~a~~~~~~-~~~~~~~~~d~~E~~ev~wv~l~el~~~i 189 (218)
T 3q91_A 143 GLTGSRQTMFYTEVTDAQ-RSGPGGGLVEEGELIEVVHLPLEGAQAFA 189 (218)
T ss_dssp --CCEEEEEEEEEECGGG-BCC---------CCEEEEEEEGGGHHHHH
T ss_pred CccceEEEEEEEEECCcc-cccCCCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 356677777777765432 11111001235699999999999998765
No 69
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=83.89 E-value=0.55 Score=39.05 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=27.7
Q ss_pred CCCcceEEEEEcCC--C--cEEEEEeCCC----CCCccCCC
Q 029744 65 GYRRNVGICLINSS--K--KIFAASRLDI----PDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGivl~N~~--g--~Vfvg~R~d~----~~aWQfPQ 97 (188)
.+|+.+.+||+++. | +||+++|... +|.|.||.
T Consensus 6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPG 46 (232)
T 3qsj_A 6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPG 46 (232)
T ss_dssp CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSE
T ss_pred CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCc
Confidence 37999999999864 4 8999999875 37999999
No 70
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=81.53 E-value=0.78 Score=37.53 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=24.7
Q ss_pred cceEEEEE---cCCCcEEEEEeCCC--CCCccCCC
Q 029744 68 RNVGICLI---NSSKKIFAASRLDI--PDSWQMPQ 97 (188)
Q Consensus 68 ~NVGivl~---N~~g~Vfvg~R~d~--~~aWQfPQ 97 (188)
..|++||+ |.+++||+.+|.+. .|.|.+|.
T Consensus 23 v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPG 57 (240)
T 3gz5_A 23 LTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPG 57 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSE
T ss_pred cEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCc
Confidence 57778888 67789999999864 37899998
No 71
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=80.05 E-value=0.41 Score=38.24 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCcEEEEEeCCCCCCccCCC
Q 029744 69 NVGICLINSSKKIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d~~~aWQfPQ 97 (188)
.|.++|+|.+|+||+.+| .+|.|+||.
T Consensus 46 ~vv~~i~~~~~~vLl~~r--~~g~w~~PG 72 (212)
T 1u20_A 46 AKLFDRVPIRRVLLMMMR--FDGRLGFPG 72 (212)
T ss_dssp CEETTTEECCEEEEEEEE--TTSCEECSE
T ss_pred eEEEEEEecCCEEEEEEe--CCCeEECCC
Confidence 344455688899999999 368999998
No 72
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=76.47 E-value=5.3 Score=34.64 Aligned_cols=28 Identities=11% Similarity=0.396 Sum_probs=19.4
Q ss_pred CceEeeChhhHhhcCCCCCHHHHHHHHHHh
Q 029744 154 GEWKWMSPEQILERAVDFKKPVYKEVFTVF 183 (188)
Q Consensus 154 d~WrWv~~~ell~~VV~FKR~VY~~vl~eF 183 (188)
.+++|+++++++..- +..+.-+.+++.|
T Consensus 263 ~e~~~f~~~elp~~~--~~~~~~~~~L~~y 290 (321)
T 3rh7_A 263 RQGRFLRPAELAAAK--FSSSATADIINRF 290 (321)
T ss_dssp SSSEEECHHHHTTCE--ESSHHHHHHHHHH
T ss_pred eeeEEECHHHCCCcc--cCCHHHHHHHHHH
Confidence 789999999998763 3334445555554
No 73
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=55.62 E-value=7.7 Score=31.02 Aligned_cols=16 Identities=44% Similarity=0.868 Sum_probs=15.0
Q ss_pred CcceEEEEEcCCCcEE
Q 029744 67 RRNVGICLINSSKKIF 82 (188)
Q Consensus 67 R~NVGivl~N~~g~Vf 82 (188)
++.||+||++++|+|+
T Consensus 31 ~~~VGAvIV~~dg~Ii 46 (178)
T 2w4l_A 31 NSQVGACIVNSENKIV 46 (178)
T ss_dssp SCCCEEEEECTTSCEE
T ss_pred CCCEEEEEEecCCEEE
Confidence 7889999999999998
No 74
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=54.01 E-value=9.6 Score=31.53 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=23.9
Q ss_pred CcceEEEEEcC-----CCcEEEEEeCCC--CCCccCCC
Q 029744 67 RRNVGICLINS-----SKKIFAASRLDI--PDSWQMPQ 97 (188)
Q Consensus 67 R~NVGivl~N~-----~g~Vfvg~R~d~--~~aWQfPQ 97 (188)
+..|++||++- +++|++.+|.+. .|.|.+|.
T Consensus 39 ~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPG 76 (273)
T 2fml_A 39 SLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPG 76 (273)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCE
T ss_pred ceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCc
Confidence 35678888862 459999999864 37899998
No 75
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=51.41 E-value=6.9 Score=32.83 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=22.1
Q ss_pred CCCcceEEE-EEcCCC--cEEEEEeCCCCCCccCCC
Q 029744 65 GYRRNVGIC-LINSSK--KIFAASRLDIPDSWQMPQ 97 (188)
Q Consensus 65 ~YR~NVGiv-l~N~~g--~Vfvg~R~d~~~aWQfPQ 97 (188)
|=|..|.+| |+++.| +|++.|+ + .+.|.+|.
T Consensus 56 g~R~sV~avil~~~~~~phVLLlq~-~-~~~f~LPG 89 (208)
T 3bho_A 56 GMRRTVEGVLIVHEHRLPHVLLLQL-G-TTFFKLPG 89 (208)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEE-E-TTEEECSE
T ss_pred CCceEEEEEEEEcCCCCcEEEEEEc-C-CCcEECCC
Confidence 345555554 566666 7999998 3 56999999
No 76
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=44.66 E-value=16 Score=28.10 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=19.0
Q ss_pred CCcceEEEEEcCCCcEEEEEeCC
Q 029744 66 YRRNVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 66 YR~NVGivl~N~~g~Vfvg~R~d 88 (188)
|- .||++|..++|+|+.|-=+.
T Consensus 22 yS-~VGAAl~~~dG~i~~G~NvE 43 (142)
T 3b8f_A 22 DW-GGAAAIRVEDGTIYTSVAPD 43 (142)
T ss_dssp SC-EEEEEEEETTSCEEEECCCC
T ss_pred CC-CEEEEEEeCCCcEEEEECcc
Confidence 66 89999999999999887544
No 77
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=42.29 E-value=10 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=24.5
Q ss_pred EEEEEcCCCcEEEEEeCCCCCCccCCC-----CCCcee----ecCChhhH
Q 029744 71 GICLINSSKKIFAASRLDIPDSWQMPQ-----VPYWLT----YDFPPEVR 111 (188)
Q Consensus 71 Givl~N~~g~Vfvg~R~d~~~aWQfPQ-----t~~WL~----YDlP~~~~ 111 (188)
=++|.|++|+++|.+|- .|. -++||. |++-.++.
T Consensus 43 LvlIYDe~G~lLW~qr~-------vP~le~~I~~eWLkk~gf~Eidtd~~ 85 (148)
T 3bqa_A 43 MTLIYDENGQLLWAQRD-------VPWLMKMIQPDWLKSNGFHEIEADVN 85 (148)
T ss_dssp EEEEECTTSCEEEESSC-------CHHHHHHSCGGGSSSCEEEEEEEEHH
T ss_pred EEEEEcCCCcEEEecCc-------chHHHhhcCHHHhcCCCcEEEecCcc
Confidence 47899999999999982 233 467774 66665544
No 78
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=40.58 E-value=18 Score=27.67 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=17.3
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
-||++|..++|+|+.|.=+.
T Consensus 25 ~VGAal~~~dG~i~~G~Nve 44 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIE 44 (136)
T ss_dssp CEEEEEEETTSCEEEEECBC
T ss_pred CEEEEEEeCCCeEEEEeCcc
Confidence 69999999999999887544
No 79
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=39.12 E-value=19 Score=27.24 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.6
Q ss_pred cceEEEEEcCCCcEEEEEeCC
Q 029744 68 RNVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 68 ~NVGivl~N~~g~Vfvg~R~d 88 (188)
-.||++|..++|+|+.|--+.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE 47 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVY 47 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCC
T ss_pred CCEEEEEEecCCeEEEEeccc
Confidence 359999999999999987543
No 80
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=37.71 E-value=21 Score=27.69 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=18.0
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
.||++|..++|+|+.|-=+.
T Consensus 34 ~VGAAll~~dG~i~~G~NvE 53 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVE 53 (141)
T ss_dssp CEEEEEEETTCCEEEEECBC
T ss_pred cEEEEEEeCCCCEEEeeccc
Confidence 79999999999999998654
No 81
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=35.92 E-value=23 Score=27.60 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=17.9
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
.||++|.-++|+|+.|==+.
T Consensus 33 ~VGAAll~~dG~iytG~NVE 52 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVE 52 (138)
T ss_dssp CEEEEEEETTSCEEEEECBC
T ss_pred CEEEEEEeCCCCEEEEEeec
Confidence 69999999999999997654
No 82
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=34.88 E-value=25 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=17.9
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
.||++|..++|+|+.|-=+.
T Consensus 33 ~VGAAl~~~dG~i~~G~NvE 52 (142)
T 1r5t_A 33 RVGCSILTNNDVIFTGANVE 52 (142)
T ss_dssp CEEEEEECTTSCEEEEECBC
T ss_pred CEEEEEEeCCCCEEEEEeec
Confidence 69999999999999998654
No 83
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=33.75 E-value=26 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=17.5
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
.||++|..++|+|+.|-=+.
T Consensus 37 ~VGAal~~~dG~i~~G~NvE 56 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGCNIE 56 (146)
T ss_dssp CEEEEEEETTSCEEEEECBC
T ss_pred CEEEEEEeCCCcEEEEEecc
Confidence 69999999999999887544
No 84
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=33.69 E-value=24 Score=27.88 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=17.8
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
.||++|.-++|+|+.|==+.
T Consensus 47 ~VGAAll~~dG~i~tG~NvE 66 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVE 66 (150)
T ss_dssp CCEEEEEETTSCEEEEECBC
T ss_pred CEEEEEEeCCCCEEEEEecc
Confidence 69999999999999997654
No 85
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=33.39 E-value=25 Score=27.23 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=17.7
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
.||++|..++|+|+.|-=+.
T Consensus 32 ~VGAAll~~dG~i~~G~NvE 51 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVE 51 (138)
T ss_dssp CCEEEEEETTSCEEEEECBC
T ss_pred cEEEEEEeCCCcEEEEEccc
Confidence 79999999999999997554
No 86
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=30.54 E-value=31 Score=27.46 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=17.5
Q ss_pred ceEEEEEcCCCcEEEEEeCC
Q 029744 69 NVGICLINSSKKIFAASRLD 88 (188)
Q Consensus 69 NVGivl~N~~g~Vfvg~R~d 88 (188)
.||++|..++|+|+.|==+.
T Consensus 52 ~VGAAll~~dG~i~tG~NVE 71 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVY 71 (158)
T ss_dssp CEEEEEEETTSCEEEEECCC
T ss_pred cEEEEEEeCCCCEEEEEccc
Confidence 69999999999999997543
No 87
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=25.47 E-value=87 Score=22.83 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCCCCCCCcceEEEE---EcCCCcEEEEEeC
Q 029744 60 DAPPEGYRRNVGICL---INSSKKIFAASRL 87 (188)
Q Consensus 60 ~~~~~~YR~NVGivl---~N~~g~Vfvg~R~ 87 (188)
..+|+.+|.+.|||+ +++++.+|.|..+
T Consensus 51 GilPDlFrEGqgVV~~G~l~~~~g~F~A~ev 81 (94)
T 2kct_A 51 GAVPDTFKPGVEVIIEGGLAPGEDTFKARTL 81 (94)
T ss_dssp SCCCTTCCTTCEEEEEEEECTTCSEEEEEEE
T ss_pred CCCCccccCCCeEEEEEEEeCCCCEEEEeEE
Confidence 478999999999999 4552458888876
No 88
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=24.82 E-value=53 Score=25.49 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=13.9
Q ss_pred CcceEEEEE-cCCCcEE
Q 029744 67 RRNVGICLI-NSSKKIF 82 (188)
Q Consensus 67 R~NVGivl~-N~~g~Vf 82 (188)
.+.||+||+ +++|+|+
T Consensus 33 ~~pVGAviVd~~~g~Ii 49 (161)
T 1p6o_A 33 GVPIGGCLINNKDGSVL 49 (161)
T ss_dssp SCCCEEEEEETTTCCEE
T ss_pred CCCEEEEEEEecCCEEE
Confidence 567999999 5899998
No 89
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=24.46 E-value=45 Score=25.15 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=12.9
Q ss_pred CcceEEEEEcCCCcEE
Q 029744 67 RRNVGICLINSSKKIF 82 (188)
Q Consensus 67 R~NVGivl~N~~g~Vf 82 (188)
...||+||++ +|+|+
T Consensus 23 ~~~VGAviv~-~g~Ii 37 (144)
T 2a8n_A 23 EVPIGAVLVL-DGRVI 37 (144)
T ss_dssp SCCCEEEEEE-TTEEE
T ss_pred CCCEEEEEEE-CCEEE
Confidence 4679999998 89997
No 90
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=24.43 E-value=58 Score=18.90 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=13.9
Q ss_pred eEEEEEcCCCcEEEEEe
Q 029744 70 VGICLINSSKKIFAASR 86 (188)
Q Consensus 70 VGivl~N~~g~Vfvg~R 86 (188)
.||+++|.+|+|...-+
T Consensus 3 ~~i~~~d~~g~i~~~N~ 19 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNK 19 (96)
T ss_dssp CEEEEEETTSBEEEECH
T ss_pred ceEEEEcCCCCEeehhH
Confidence 58999999999986543
No 91
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=23.36 E-value=42 Score=26.57 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.5
Q ss_pred CcceEEEEEcCCCcEE
Q 029744 67 RRNVGICLINSSKKIF 82 (188)
Q Consensus 67 R~NVGivl~N~~g~Vf 82 (188)
++.||+||+ ++|+|+
T Consensus 21 ~~~VGAVIV-~dg~Ii 35 (193)
T 1vq2_A 21 SWKVGAVIE-KNGRII 35 (193)
T ss_dssp SBCCEEEEE-ETTEEE
T ss_pred CCCEEEEEE-ECCEEE
Confidence 688999999 799997
No 92
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=21.40 E-value=63 Score=21.56 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=14.7
Q ss_pred eEEEEEcCCCcEEEEEe
Q 029744 70 VGICLINSSKKIFAASR 86 (188)
Q Consensus 70 VGivl~N~~g~Vfvg~R 86 (188)
.||+++|.+|+|...-+
T Consensus 16 ~gviv~D~~g~I~~~N~ 32 (121)
T 4hi4_A 16 ANVMIADNDLNIIYMNR 32 (121)
T ss_dssp SEEEEEETTCBEEEECH
T ss_pred ccEEEEcCCCeEEEecH
Confidence 59999999999987654
No 93
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=21.32 E-value=70 Score=20.59 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.3
Q ss_pred cceEEEEEcCC-CcEEEEEe
Q 029744 68 RNVGICLINSS-KKIFAASR 86 (188)
Q Consensus 68 ~NVGivl~N~~-g~Vfvg~R 86 (188)
.+.||+++|.+ |+|...-+
T Consensus 7 ~~~~i~~~d~~~g~I~~~N~ 26 (114)
T 1ll8_A 7 FNKAIFTVDAKTTEILVAND 26 (114)
T ss_dssp TTCEEEEEETTTCBEEEECT
T ss_pred CCceEEEEECCCCeEEEehH
Confidence 46799999999 99986643
No 94
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=20.86 E-value=58 Score=22.93 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.7
Q ss_pred cceEEEEEcCCCcEEE
Q 029744 68 RNVGICLINSSKKIFA 83 (188)
Q Consensus 68 ~NVGivl~N~~g~Vfv 83 (188)
.-|++|||++.|+++.
T Consensus 40 aeV~livfs~~gk~~~ 55 (77)
T 1egw_A 40 CEIALIIFNSSNKLFQ 55 (77)
T ss_dssp CEEEEEEECTTCCEEE
T ss_pred CeEEEEEECCCCCEee
Confidence 3599999999999874
Done!