Query 029745
Match_columns 188
No_of_seqs 105 out of 446
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_C Fumarate reductase 15 k 38.0 1.2E+02 0.0042 22.4 7.8 46 71-116 59-110 (130)
2 3arc_X Photosystem II PSBX pro 24.3 56 0.0019 19.3 2.4 20 129-148 3-22 (39)
3 1fjk_A Cardiac phospholamban; 24.0 1.1E+02 0.0039 18.6 3.8 28 48-75 21-48 (52)
4 3bz1_X Photosystem II PSBX pro 20.9 51 0.0017 20.5 1.8 24 125-148 9-32 (50)
5 3fea_A MDM4 protein; HDMX, HDM 16.8 37 0.0013 24.2 0.5 29 27-56 68-96 (100)
6 3ayf_A Nitric oxide reductase; 15.4 6.7E+02 0.023 23.8 9.0 23 73-95 250-272 (800)
7 3b5x_A Lipid A export ATP-bind 14.1 6.4E+02 0.022 22.2 10.1 20 43-62 120-139 (582)
8 1rh5_C Secbeta; protein transl 13.5 1.7E+02 0.0059 18.1 3.0 19 106-124 25-43 (53)
9 2yl4_A ATP-binding cassette SU 13.5 6.3E+02 0.022 22.3 8.1 18 43-60 117-134 (595)
10 3dac_M MDM4 protein; MDMX, MDM 12.5 55 0.0019 24.3 0.5 29 27-56 77-105 (130)
No 1
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=37.99 E-value=1.2e+02 Score=22.44 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH-----HHHhc-cCCCeeecceechHHHHHH
Q 029745 71 FLSLIYHPVSIIVFLLTLVAWF-----FLYFA-RDDPLTVLGFQVDDRVVIG 116 (188)
Q Consensus 71 ~~~ll~~P~~Li~l~~~~~~~~-----~i~~~-~~~pl~i~g~~~~~~~~~~ 116 (188)
.+..+.||+.++.=++..++.. ++... +.-|+.+.|+.++++.+..
T Consensus 59 fv~fl~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~I~v~~~~~~~~~i~~ 110 (130)
T 1kf6_C 59 FVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIK 110 (130)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeeCCCcCChHHHHH
Confidence 3456678988776665543221 11111 2245777888888765543
No 2
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=24.32 E-value=56 Score=19.26 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029745 129 THVWVNVLVSVVVGAVLVIL 148 (188)
Q Consensus 129 ~~~~~~l~~~l~~s~~vvl~ 148 (188)
+.+..++++++.++.+++.+
T Consensus 3 TpSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 3 TPSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 45566777777777765544
No 3
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=24.01 E-value=1.1e+02 Score=18.59 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 029745 48 TTRITQNLTHFRSNYAVITLLALFLSLI 75 (188)
Q Consensus 48 ~~Ri~~Nl~yF~~NY~li~~~~~~~~ll 75 (188)
...-+.|+.---.|+-++.+-+.+++++
T Consensus 21 ~~qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 21 PQQARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888777666665554
No 4
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=20.94 E-value=51 Score=20.50 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029745 125 GLVLTHVWVNVLVSVVVGAVLVIL 148 (188)
Q Consensus 125 ll~~~~~~~~l~~~l~~s~~vvl~ 148 (188)
+..++.+..++++++.++.+++.+
T Consensus 9 l~~mTpSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 9 LLTITPSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHH
Confidence 344677788888888888876555
No 5
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=16.80 E-value=37 Score=24.16 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=24.5
Q ss_pred CChhhhhCcCCCCCCCChhHHHHHHHHhHH
Q 029745 27 RPWSDFLDLSAFNLPLSLSDATTRITQNLT 56 (188)
Q Consensus 27 RPw~eF~~~~~fs~P~s~~~~~~Ri~~Nl~ 56 (188)
-|..|-++..+|+. ++.+.+..++++||.
T Consensus 68 D~LG~l~G~~sFsv-kdp~~l~~ml~~nLv 96 (100)
T 3fea_A 68 DLLGELLGRQSFSV-KDPSPLYDMLRKNLV 96 (100)
T ss_dssp SHHHHHHTCSEEET-TCCHHHHHHHHHHEE
T ss_pred CccccccCCcceee-cCchHHHHHHHhhce
Confidence 45678889999999 668999999999973
No 6
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=15.39 E-value=6.7e+02 Score=23.82 Aligned_cols=23 Identities=9% Similarity=0.418 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 029745 73 SLIYHPVSIIVFLLTLVAWFFLY 95 (188)
Q Consensus 73 ~ll~~P~~Li~l~~~~~~~~~i~ 95 (188)
..+|+-++++.++...+...+.|
T Consensus 250 ~~~ws~~s~~~l~~~~~~~~~~~ 272 (800)
T 3ayf_A 250 AVWWSGASVTILILFIGIILYVF 272 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665554444444
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=14.09 E-value=6.4e+02 Score=22.23 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHhHHHHHHHH
Q 029745 43 SLSDATTRITQNLTHFRSNY 62 (188)
Q Consensus 43 s~~~~~~Ri~~Nl~yF~~NY 62 (188)
+..++.+|+.+.....+..|
T Consensus 120 ~~g~l~~rl~~d~~~i~~~~ 139 (582)
T 3b5x_A 120 STGGLLSRITYDSEQVAGAT 139 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 35889999987776555443
No 8
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=13.55 E-value=1.7e+02 Score=18.12 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=10.9
Q ss_pred ceechHHHHHHHHHHHHHH
Q 029745 106 GFQVDDRVVIGALFAVTVT 124 (188)
Q Consensus 106 g~~~~~~~~~~~l~~vt~~ 124 (188)
|.+++|+.+++..+++.++
T Consensus 25 giKi~P~~Vl~~si~~i~~ 43 (53)
T 1rh5_C 25 KIRVKPEHVIGVTVAFVII 43 (53)
T ss_dssp SCCCCHHHHHHHHHHHHHH
T ss_pred ccccCCeehhhhHHHHHHH
Confidence 5677786665544444443
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=13.49 E-value=6.3e+02 Score=22.34 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHhHHHHHH
Q 029745 43 SLSDATTRITQNLTHFRS 60 (188)
Q Consensus 43 s~~~~~~Ri~~Nl~yF~~ 60 (188)
+..++.+|+.+.....+.
T Consensus 117 ~~g~l~~r~~~d~~~i~~ 134 (595)
T 2yl4_A 117 RTGELINRLSSDTALLGR 134 (595)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 468999999876655443
No 10
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=12.54 E-value=55 Score=24.30 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=24.3
Q ss_pred CChhhhhCcCCCCCCCChhHHHHHHHHhHH
Q 029745 27 RPWSDFLDLSAFNLPLSLSDATTRITQNLT 56 (188)
Q Consensus 27 RPw~eF~~~~~fs~P~s~~~~~~Ri~~Nl~ 56 (188)
-|..|-++..+||. ++.+.+..++++|+.
T Consensus 77 D~LG~llGv~sFSV-kdp~~L~~mL~~NLv 105 (130)
T 3dac_M 77 DPLGELLEVGSFSV-KNPSPLYEMLKRNLV 105 (130)
T ss_dssp SHHHHHHTSSEEET-TSCHHHHHHHHHHEE
T ss_pred cccccccCCcceee-cCcHHHHHHHHhhee
Confidence 35678889999999 668999999999973
Done!