BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029746
         (188 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface Is A Part Of The
           Active Site Of The Adjacent Monomer Of Escherichia Coli
           Orotate Phosphoribosyltransferase
 pdb|1ORO|B Chain B, A Flexible Loop At The Dimer Interface Is A Part Of The
           Active Site Of The Adjacent Monomer Of Escherichia Coli
           Orotate Phosphoribosyltransferase
          Length = 213

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 73  STLFGAISMIDDPLTEGPELSSKLV------GKAQGFYASAARDENGLMMVMNFAFMEGK 126
           S L G + ++DD +T G  +   +           G   S  R E G   +     +E  
Sbjct: 114 SALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERGRGEISAIQEVERD 173

Query: 127 YNGSTISVLGRNKVFSPMREMP 148
           YN   IS++    + + + E P
Sbjct: 174 YNCKVISIITLKDLIAYLEEKP 195


>pdb|2QFL|A Chain A, Structure Of Suhb: Inositol Monophosphatase And Extragenic
           Suppressor From E. Coli
          Length = 267

 Score = 27.7 bits (60), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 20/116 (17%)

Query: 41  EKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSS-KLVGK 99
           ++L HF +       G   T VAVV  P +N   LF A         +G +L+  +L G 
Sbjct: 94  KRLPHFAVSIAVRIKGR--TEVAVVYDPMRNE--LFTATR------GQGAQLNGYRLRG- 142

Query: 100 AQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGL 155
                 S ARD +G ++   F F   +Y  + I+++G  K+F+   +    G + L
Sbjct: 143 ------STARDLDGTILATGFPFKAKQYATTYINIVG--KLFNECADFRATGSAAL 190


>pdb|1Y8A|A Chain A, Structure Of Gene Product Af1437 From Archaeoglobus
           Fulgidus
          Length = 332

 Score = 26.6 bits (57), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 133 SVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIY 184
            +  R++V   +  +  +G     +  RGY E++   F    GD+  +Y ++
Sbjct: 186 ELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDFPVVVGDSISDYKMF 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,156,271
Number of Sequences: 62578
Number of extensions: 196363
Number of successful extensions: 348
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 20
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)