BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029746
         (188 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 48  LYWHDI-YSGSNPT--AVAVVAAPQKNSSTL------FGAISMIDDPLTEGPELSSKLVG 98
            Y+HDI Y+G N      A+VAAP+  S T       FG I + DDP+T    LSSK VG
Sbjct: 36  FYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSKQVG 95

Query: 99  KAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRF 158
           +AQGFY    ++     +   F      + G TI+  G + + +  R++ V GG+G F  
Sbjct: 96  RAQGFYIYDTKNTYTSWLSFTFVLNSTHHQG-TITFAGADPIVAKTRDISVTGGTGDFFM 154

Query: 159 ARGYVEARTHKFDATTGDATVEYNIYV 185
            RG     T   DA  G+A     +Y+
Sbjct: 155 HRGIATITT---DAFEGEAYFRLGVYI 178


>sp|Q68WZ1|RUVA_RICTY Holliday junction ATP-dependent DNA helicase RuvA OS=Rickettsia
           typhi (strain ATCC VR-144 / Wilmington) GN=ruvA PE=3
           SV=1
          Length = 200

 Score = 33.9 bits (76), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 25  YGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDD 84
           YG+ T  +KNFF L +            I S   PT + +  A   +   +F AIS + D
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKI--AINNDDKNIFKAISGVGD 117

Query: 85  PLTEGPELSSKLVGKAQGFYASAA 108
            LTE   L  +L GK    ++S+A
Sbjct: 118 KLTERIML--ELKGKIAKIFSSSA 139


>sp|B2VF77|PYRE_ERWT9 Orotate phosphoribosyltransferase OS=Erwinia tasmaniensis (strain
           DSM 17950 / Et1/99) GN=pyrE PE=3 SV=1
          Length = 213

 Score = 30.8 bits (68), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 73  STLFGAISMIDDPLTEGP------ELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGK 126
           S L G I ++DD +T G       E+ +    K  G   S  R E G   +     +E  
Sbjct: 114 SPLQGKIMLVDDVITAGTAIRESMEIIAAHRAKLAGVLISLDRQERGSGAISAIQEVERD 173

Query: 127 YNGSTISVLGRNKVFSPMREMPVIGGS 153
           Y    IS++  N++ + + E P +  S
Sbjct: 174 YGCKVISIITLNELVAYLAEKPEMADS 200


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,757,260
Number of Sequences: 539616
Number of extensions: 2675202
Number of successful extensions: 5380
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5377
Number of HSP's gapped (non-prelim): 8
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)