Query 029746
Match_columns 188
No_of_seqs 118 out of 536
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 4.6E-54 9.9E-59 342.4 19.1 144 42-187 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.8 0.001 2.3E-08 54.2 13.7 119 40-170 4-127 (176)
3 PLN02343 allene oxide cyclase 97.3 0.017 3.8E-07 48.9 15.0 121 39-170 53-178 (229)
4 PF11528 DUF3224: Protein of u 79.1 30 0.00064 27.4 9.8 88 94-187 40-133 (134)
5 PF06347 SH3_4: Bacterial SH3 19.8 65 0.0014 20.6 1.3 16 85-100 6-21 (55)
6 PF08239 SH3_3: Bacterial SH3 19.4 84 0.0018 19.7 1.8 16 85-100 4-19 (55)
7 PF06692 MNSV_P7B: Melon necro 11.9 2.6E+02 0.0057 19.2 2.6 16 48-63 38-53 (61)
8 PF14428 SCP1201-deam: SCP1.20 11.6 2E+02 0.0044 22.6 2.3 23 127-154 112-134 (135)
9 PHA03376 BARF1; Provisional 10.9 2.7E+02 0.0059 24.0 3.0 50 1-53 1-51 (221)
10 KOG1692 Putative cargo transpo 10.8 1E+03 0.022 20.3 7.4 68 116-188 43-115 (201)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=4.6e-54 Score=342.36 Aligned_cols=144 Identities=52% Similarity=0.925 Sum_probs=135.3
Q ss_pred ceeEEEEEeeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEecCCCceeEEEEEEE
Q 029746 42 KLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFA 121 (188)
Q Consensus 42 ~~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~v 121 (188)
|++||+|||||+++|||+|++.|+.++.+ ...+||+++|+||||||||+++||+||||||+|+.+++++.+|+++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~-~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~v 79 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGP-SSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLV 79 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCC-CCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEE
Confidence 57899999999999999999999988654 33399999999999999999999999999999999999999999999999
Q ss_pred EccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEeecCCCCCeEEEEEEEEEe
Q 029746 122 FMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH 187 (188)
Q Consensus 122 F~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~h 187 (188)
|++++||||||+++|+++..+++||||||||||+||||||||+++++ .+.+..++|+|||||++|
T Consensus 80 F~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 80 FEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 99999999999999999988899999999999999999999999999 334478999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.81 E-value=0.001 Score=54.17 Aligned_cols=119 Identities=22% Similarity=0.370 Sum_probs=76.0
Q ss_pred cCceeEEEEE-eeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCCcee
Q 029746 40 EEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDENGL 114 (188)
Q Consensus 40 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~~ 114 (188)
+.+...|++| +.|.-.| .|.-.++-+ .+....|+.+=+.|+|++|.- -+-+|--+|+-+.-. +.+..+
T Consensus 4 p~kvqel~vyeiNErdR~-SPa~L~ls~----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdry 76 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRG-SPAYLRLSQ----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRY 76 (176)
T ss_dssp ----EEEEEEEE--S-S---S--B--SS----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEE
T ss_pred ccceEEEEEEEEcccccC-CCcEEEccc----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceE
Confidence 3455678888 4444322 233334321 344679999999999999987 678999999976533 244566
Q ss_pred EEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEee
Q 029746 115 MMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKF 170 (188)
Q Consensus 115 ~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~ 170 (188)
=-.+++.|-| .| .|+++|..... +..-++|.||||-|+.|+|-++++.+-+
T Consensus 77 EaiySfyfGd---yG-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 77 EAIYSFYFGD---YG-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEEE-GG---GE-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEEecc---cc-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence 6777888865 34 79999986543 4567999999999999999999887754
No 3
>PLN02343 allene oxide cyclase
Probab=97.31 E-value=0.017 Score=48.85 Aligned_cols=121 Identities=21% Similarity=0.368 Sum_probs=85.7
Q ss_pred CcCceeEEEEE-eeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCCce
Q 029746 39 KEEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDENG 113 (188)
Q Consensus 39 ~~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~ 113 (188)
++.+...|++| +.|.-.+ .|.-.+.-+. ......|+++=|-+.|++|.- -|-+|--.|+-+.-. +.+..
T Consensus 53 ~p~kvQel~VYEiNErDR~-SPa~L~ls~k---~~~~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDr 126 (229)
T PLN02343 53 RPTKVQELSVYEINERDRG-SPAFLKLSKK---SVENALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDR 126 (229)
T ss_pred CCceeEEEEEEEeccccCC-CcceEEcccC---cccccccceeccccccccchh--hhhhcccceeEEEEEeccccCCce
Confidence 34566677777 4443222 2333333222 122568999999999999865 477899999866533 34567
Q ss_pred eEEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEee
Q 029746 114 LMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKF 170 (188)
Q Consensus 114 ~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~ 170 (188)
+=..+++.|-| .| .|+++|....- +..-++|.||+|-|..|+|-+++..+-+
T Consensus 127 yEa~ySfyfGD---yG-HisvqGpylty-eDt~LaiTGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 127 YEAIYSFYFGD---YG-HISVQGPYLTY-EDTYLAITGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred eEEEEEEEecC---cc-eeEEecccccc-ccceEEeecCcceeecceeEEEEeeeee
Confidence 88888999976 35 79999986543 3457999999999999999999887664
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=79.07 E-value=30 Score=27.36 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=53.1
Q ss_pred CcceeeEEEEEEEecC-CCceeEEEEEEEEc-cCcccCcEEEEe--ccccCCCCceeeEEE--ecccceeceEEEEEEEE
Q 029746 94 SKLVGKAQGFYASAAR-DENGLMMVMNFAFM-EGKYNGSTISVL--GRNKVFSPMREMPVI--GGSGLFRFARGYVEART 167 (188)
Q Consensus 94 Sk~VGRAQG~~~~~s~-~~~~~~~~~~~vF~-~g~~~GSTl~v~--G~~~~~~~~rE~aVV--GGTG~Fr~ArGya~~~t 167 (188)
-.+.|++++-|+.+-. ++...+..+..+=- -+..+|| +.++ |...-.....+|-|| -|||++...+|-...+.
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~Gs-Fvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~ 118 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGS-FVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITI 118 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEE
Confidence 3577888888887654 45555555553211 1224664 5555 433222234679999 99999999999998764
Q ss_pred EeecCCCCCeEEEEEEEEEe
Q 029746 168 HKFDATTGDATVEYNIYVLH 187 (188)
Q Consensus 168 ~~~~~~~~~~v~e~~v~v~h 187 (188)
.. +...++|+..+.+
T Consensus 119 ~~-----g~h~y~f~y~l~d 133 (134)
T PF11528_consen 119 DE-----GQHAYDFEYTLPD 133 (134)
T ss_dssp ET-----TCEEEEEEEEEEE
T ss_pred CC-----CCceeeEEEECCC
Confidence 33 3447788777654
No 5
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=19.77 E-value=65 Score=20.65 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.7
Q ss_pred ccccCCCCCCcceeeE
Q 029746 85 PLTEGPELSSKLVGKA 100 (188)
Q Consensus 85 ~lt~Gp~~~Sk~VGRA 100 (188)
+|+.+|+.+|+++.++
T Consensus 6 ~lr~~P~~~~~vv~~l 21 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARL 21 (55)
T ss_pred EEEcCCCCCCCEEEEE
Confidence 5788999999998876
No 6
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=19.44 E-value=84 Score=19.74 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.1
Q ss_pred ccccCCCCCCcceeeE
Q 029746 85 PLTEGPELSSKLVGKA 100 (188)
Q Consensus 85 ~lt~Gp~~~Sk~VGRA 100 (188)
.|+.+|+.+|+.|+.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4688899999998874
No 7
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=11.94 E-value=2.6e+02 Score=19.21 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=7.9
Q ss_pred EEeeeecCCCCcceEE
Q 029746 48 LYWHDIYSGSNPTAVA 63 (188)
Q Consensus 48 fY~Hd~~sg~n~t~~~ 63 (188)
.|.|..-+-.-.|+..
T Consensus 38 ~y~HH~d~Ss~KTQyv 53 (61)
T PF06692_consen 38 TYVHHFDNSSVKTQYV 53 (61)
T ss_pred eeEEeecCccceeEEE
Confidence 4555555444445543
No 8
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=11.56 E-value=2e+02 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=16.2
Q ss_pred ccCcEEEEeccccCCCCceeeEEEeccc
Q 029746 127 YNGSTISVLGRNKVFSPMREMPVIGGSG 154 (188)
Q Consensus 127 ~~GSTl~v~G~~~~~~~~rE~aVVGGTG 154 (188)
.+||||+|.+++.. +--.++|+|
T Consensus 112 P~GstLtV~~~~~~-----~~~~~~g~g 134 (135)
T PF14428_consen 112 PEGSTLTVHWPGGR-----GPVTLRGTG 134 (135)
T ss_pred CCCCEEEEEeeCCC-----ceeEEeccC
Confidence 37899999998753 233567776
No 9
>PHA03376 BARF1; Provisional
Probab=10.88 E-value=2.7e+02 Score=23.97 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=29.0
Q ss_pred CCcchhHHHHHHHHhhhhhccccccceeeeccccccccC-cCceeEEEEEeeee
Q 029746 1 MARVFPLLASQIIIFFLFSFSNQSYGYATTLDKNFFRLK-EEKLSHFRLYWHDI 53 (188)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~fY~Hd~ 53 (188)
||+++.-|+. |-.+|++........++..--+|... .....+++.||..-
T Consensus 1 ~~~~~~~Ll~---La~l~~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs 51 (221)
T PHA03376 1 MARFIAQLLL---LASCVAAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKL 51 (221)
T ss_pred ChhHHHHHHH---HHHHhccCcchhheeCCcEEEEecccCccCCCceEEEEEec
Confidence 6665443222 33444444455566666665566664 45557999999874
No 10
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=10.84 E-value=1e+03 Score=20.33 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=41.5
Q ss_pred EEEEEEEccCcccCcEEEEecccc--CCCCceeeEEEecccceece---EEEEEEEEEeecCCCCCeEEEEEEEEEeC
Q 029746 116 MVMNFAFMEGKYNGSTISVLGRNK--VFSPMREMPVIGGSGLFRFA---RGYVEARTHKFDATTGDATVEYNIYVLHY 188 (188)
Q Consensus 116 ~~~~~vF~~g~~~GSTl~v~G~~~--~~~~~rE~aVVGGTG~Fr~A---rGya~~~t~~~~~~~~~~v~e~~v~v~hy 188 (188)
++.++++.+|.+.|--+.|.|... +....+|-+ |+|.++ .|.-+.=..-..++-...++-++|++-||
T Consensus 43 ~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ss-----gk~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~ 115 (201)
T KOG1692|consen 43 LSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESS-----GKYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHA 115 (201)
T ss_pred EEEEEEEecCCccceeEEEECCCCchhhhcccccC-----ceEEEEecCCceEEEEecCCCCCCCceEEEEEEEEeec
Confidence 455666667888888899999753 223345543 777664 45444322222222246789999998875
Done!