Query 029746
Match_columns 188
No_of_seqs 118 out of 536
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 2.8E-07 9.4E-12 74.7 14.1 130 40-186 13-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.4 6.9E-06 2.4E-10 66.8 14.5 123 40-170 14-144 (195)
3 3h6j_A Neuraminidase, sialidas 51.6 10 0.00034 32.6 3.1 57 108-166 369-435 (438)
4 2q03_A Uncharacterized protein 29.0 1.9E+02 0.0064 21.9 10.4 72 94-166 45-122 (138)
5 2xdp_A Lysine-specific demethy 19.2 1.5E+02 0.0052 22.1 4.5 57 72-148 63-119 (123)
6 2ooj_A Hypothetical protein; s 18.4 3.1E+02 0.011 20.6 11.2 73 94-167 41-120 (141)
7 2qqr_A JMJC domain-containing 18.0 1.3E+02 0.0045 22.3 3.9 56 73-148 63-118 (118)
8 2krs_A Probable enterotoxin; a 16.6 55 0.0019 21.5 1.4 16 85-100 12-27 (74)
9 2kq8_A Cell WALL hydrolase; GF 13.7 58 0.002 21.1 0.9 16 85-100 13-28 (70)
10 2kt8_A Probable surface protei 11.7 77 0.0026 21.0 1.0 15 85-99 14-28 (76)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.74 E-value=2.8e-07 Score=74.75 Aligned_cols=130 Identities=19% Similarity=0.326 Sum_probs=92.5
Q ss_pred cCceeEEEEE-eeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCCcee
Q 029746 40 EEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDENGL 114 (188)
Q Consensus 40 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~~ 114 (188)
+.+...|.+| +.|.-.+ .|.-.++-+ ++...-|+.+.++++|.+|.. -+.||.-+|+-+... +.+..+
T Consensus 13 ~~~vq~l~vye~NE~dr~-sPa~L~l~~----k~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdry 85 (188)
T 2brj_A 13 PSKVQELSVYEINELDRH-SPKILKNAF----SLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERF 85 (188)
T ss_dssp --CCEEEEEEEECCSCSC-CCCCBCCCS----SSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEE
T ss_pred ccceEEEEEEEecccccC-CCceEEccc----ccCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEE
Confidence 3455677777 4433222 232222221 234568999999999997765 589999999977664 345678
Q ss_pred EEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEeecCCCCCeEEEEEEEEE
Q 029746 115 MMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVL 186 (188)
Q Consensus 115 ~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~ 186 (188)
-..+++.|-+ .| .|+++|..... +...++|.||||.|+-|+|.++++.+.+. ..++|.+|+.
T Consensus 86 E~tyS~yfgd---~G-hISvQGpy~t~-~Dt~LAITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 86 EATYSFYFGD---YG-HLSVQGPYLTY-EDSFLAITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEEECGG---GE-EEEEEEEEETT-BCEEEEEEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EEEEEEEeCC---Cc-eEEEecccccc-ccceeeEecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 8888888865 24 79999985322 45789999999999999999999988863 2578888764
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.44 E-value=6.9e-06 Score=66.83 Aligned_cols=123 Identities=18% Similarity=0.296 Sum_probs=85.1
Q ss_pred cCceeEEEEE-eeeecCCCCcceEEEeeCCCC---CCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCC
Q 029746 40 EEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQK---NSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDE 111 (188)
Q Consensus 40 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~---~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~ 111 (188)
+.+...|+.| +.|.-.+ .|.-.++-+-+.+ ..-...|+.+.+.++|++|.. -+-||...|+-+... +.+
T Consensus 14 p~~vqel~VyEiNE~dr~-sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~G 90 (195)
T 4h6b_A 14 PGHVQELFVYEINERDRG-SPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNG 90 (195)
T ss_dssp --CCEEEEEEEECCSCSC-CCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTE
T ss_pred CceeEEEEEEEecccccC-CcceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCCCCC
Confidence 4566688888 4444322 2322332211111 123569999999999999987 578999999976653 233
Q ss_pred ceeEEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEee
Q 029746 112 NGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKF 170 (188)
Q Consensus 112 ~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~ 170 (188)
..+--.+++.|.+ .| +|+++|..-. -...-++|+||||.|+.|+|-+++..+-+
T Consensus 91 dryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAITGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 91 DRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAITGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEEEEESGGGTTCEEEEEEEEEET
T ss_pred ceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEEecCcceEcccEEEEEEeEeee
Confidence 4566677788866 46 6999998633 24567999999999999999999887765
No 3
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=51.61 E-value=10 Score=32.59 Aligned_cols=57 Identities=28% Similarity=0.437 Sum_probs=39.1
Q ss_pred cCCCceeEEEEEEEEccCcccCcEEEEe-ccccCCCCceeeEEEecccce---------eceEEEEEEE
Q 029746 108 ARDENGLMMVMNFAFMEGKYNGSTISVL-GRNKVFSPMREMPVIGGSGLF---------RFARGYVEAR 166 (188)
Q Consensus 108 s~~~~~~~~~~~~vF~~g~~~GSTl~v~-G~~~~~~~~rE~aVVGGTG~F---------r~ArGya~~~ 166 (188)
+.+...|...|--.|+||.+|||--++- |...+ ..+.-+-|=|||.| |.|.||...+
T Consensus 369 ssspstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 369 SSSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp SSSCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred cCCCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEE
Confidence 3345578888889999999999977664 43322 12333455688877 7788887765
No 4
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=29.00 E-value=1.9e+02 Score=21.86 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=45.5
Q ss_pred CcceeeEEEEEEEecC-CCceeEEEEEEEE-ccCcccCcEEEEe--ccccCCCCceeeEEEe--cccceeceEEEEEEE
Q 029746 94 SKLVGKAQGFYASAAR-DENGLMMVMNFAF-MEGKYNGSTISVL--GRNKVFSPMREMPVIG--GSGLFRFARGYVEAR 166 (188)
Q Consensus 94 Sk~VGRAQG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GSTl~v~--G~~~~~~~~rE~aVVG--GTG~Fr~ArGya~~~ 166 (188)
-.+.|+.++-++.+-. ++..-++.+..+= +-+..+|| +.++ |...-......|-||= |||++...+|-...+
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~Gs-Fvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~ 122 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGS-FILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFV 122 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 4578888888887665 4444454444221 11223554 5554 4433333346788987 999999999999975
No 5
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=19.22 E-value=1.5e+02 Score=22.11 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=35.7
Q ss_pred CCCCceeEEEEecccccCCCCCCcceeeEEEEEEEecCCCceeEEEEEEEEccCcccCcEEEEeccccCCCCceeeE
Q 029746 72 SSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMP 148 (188)
Q Consensus 72 ~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~a 148 (188)
.+..-|..+-+.| ++|.-..++.+|+ .-...+++.|+|| | ...+-|+.+-....|+|
T Consensus 63 GpP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKW--PDGKLYGAKYFGS-------------NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEEeEEEeee-------------eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 3446788888888 6666555444444 3456678999985 4 44556766655555554
No 6
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=18.44 E-value=3.1e+02 Score=20.62 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=46.0
Q ss_pred CcceeeEEEEEEEecC--CCceeEEEEEEEE-ccCcccCcEEEEe--ccccCCCCceeeEEEe--cccceeceEEEEEEE
Q 029746 94 SKLVGKAQGFYASAAR--DENGLMMVMNFAF-MEGKYNGSTISVL--GRNKVFSPMREMPVIG--GSGLFRFARGYVEAR 166 (188)
Q Consensus 94 Sk~VGRAQG~~~~~s~--~~~~~~~~~~~vF-~~g~~~GSTl~v~--G~~~~~~~~rE~aVVG--GTG~Fr~ArGya~~~ 166 (188)
-.+.|+.++-++.+-. ++..-++.+..+= +-+..+|| +.++ |...-......|-||= |||++...+|-...+
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~Gr~Gs-Fvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~ 119 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGS-FVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAIS 119 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEETTEEEE-EEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 4567888888887766 3444554444221 11223554 5554 4444334457888988 999999999999986
Q ss_pred E
Q 029746 167 T 167 (188)
Q Consensus 167 t 167 (188)
.
T Consensus 120 ~ 120 (141)
T 2ooj_A 120 I 120 (141)
T ss_dssp E
T ss_pred E
Confidence 3
No 7
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=18.03 E-value=1.3e+02 Score=22.29 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=34.6
Q ss_pred CCCceeEEEEecccccCCCCCCcceeeEEEEEEEecCCCceeEEEEEEEEccCcccCcEEEEeccccCCCCceeeE
Q 029746 73 STLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMP 148 (188)
Q Consensus 73 ~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~a 148 (188)
+..-|..+-+.| ++|.-..++-+|+ .-...+++.|+|| |. ..+-|+.+-....|+|
T Consensus 63 pP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~Y~V~feDg----s~-~~~kR~~iyt~~E~lP 118 (118)
T 2qqr_A 63 PPAEGEVVQVRW--TDGQVYGAKFVAS-------------HPIQMYQVEFEDG----SQ-LVVKRDDVYTLDEELP 118 (118)
T ss_dssp CCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEEETTS----CE-EEECGGGEEETTSCCC
T ss_pred CCCCCCEEEEEc--CCCCEeeeEEece-------------eEEEEEEEEECCC----CE-EEEcHHHeeccccCCc
Confidence 446788888888 6776655555554 3456688999974 43 4446665544444443
No 8
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=16.59 E-value=55 Score=21.51 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.7
Q ss_pred ccccCCCCCCcceeeE
Q 029746 85 PLTEGPELSSKLVGKA 100 (188)
Q Consensus 85 ~lt~Gp~~~Sk~VGRA 100 (188)
.|+.||+.++++||++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6899999999998874
No 9
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=13.69 E-value=58 Score=21.07 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=13.6
Q ss_pred ccccCCCCCCcceeeE
Q 029746 85 PLTEGPELSSKLVGKA 100 (188)
Q Consensus 85 ~lt~Gp~~~Sk~VGRA 100 (188)
.|+.||+.++++||+.
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 6789999999999874
No 10
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.71 E-value=77 Score=20.99 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.8
Q ss_pred ccccCCCCCCcceee
Q 029746 85 PLTEGPELSSKLVGK 99 (188)
Q Consensus 85 ~lt~Gp~~~Sk~VGR 99 (188)
.|+.||+.++++||.
T Consensus 14 nvR~~Ps~~~~ii~~ 28 (76)
T 2kt8_A 14 NVREGASTSSKVIGS 28 (76)
T ss_dssp EEESSSSTTSCEEEE
T ss_pred EEEcCCCCCChhhEE
Confidence 578999999988876
Done!