BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029747
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q83ER0|RL18_COXBU 50S ribosomal protein L18 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rplR PE=3 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V S + A L SK + A T K++++ ++ +I A AIG+++A+RA++A
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V ++ R K+ G++RA+ +++ + GI+
Sbjct: 86 GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116
>sp|A9NAY6|RL18_COXBR 50S ribosomal protein L18 OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=rplR PE=3 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V S + A L SK + A T K++++ ++ +I A AIG+++A+RA++A
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V ++ R K+ G++RA+ +++ + GI+
Sbjct: 86 GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116
>sp|A9KD15|RL18_COXBN 50S ribosomal protein L18 OS=Coxiella burnetii (strain Dugway
5J108-111) GN=rplR PE=3 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V S + A L SK + A T K++++ ++ +I A AIG+++A+RA++A
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V ++ R K+ G++RA+ +++ + GI+
Sbjct: 86 GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116
>sp|B6J247|RL18_COXB2 50S ribosomal protein L18 OS=Coxiella burnetii (strain CbuG_Q212)
GN=rplR PE=3 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V S + A L SK + A T K++++ ++ +I A AIG+++A+RA++A
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V ++ R K+ G++RA+ +++ + GI+
Sbjct: 86 GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116
>sp|B6J5E8|RL18_COXB1 50S ribosomal protein L18 OS=Coxiella burnetii (strain CbuK_Q154)
GN=rplR PE=3 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V S + A L SK + A T K++++ ++ +I A AIG+++A+RA++A
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V ++ R K+ G++RA+ +++ + GI+
Sbjct: 86 GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116
>sp|B1Z777|RL18_METPB 50S ribosomal protein L18 OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=rplR PE=3 SV=1
Length = 120
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + + + +A A + KD+KA L++ +D A A+G+++AERA+ A
Sbjct: 29 LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V + R F G+++A+ + + G+D
Sbjct: 89 GVTKVVF-DRSGYIFHGRVKALADAAREGGLD 119
>sp|B1LWR0|RL18_METRJ 50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplR PE=3 SV=1
Length = 120
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + + V K +A A + K +K L++ +D+ A A+G+++AERA+ A
Sbjct: 29 LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V T R + G+++AV ++ + G++
Sbjct: 89 GV-TKVIFDRSGYIYHGRVKAVAEAAREGGLE 119
>sp|A9W4S4|RL18_METEP 50S ribosomal protein L18 OS=Methylobacterium extorquens (strain
PA1) GN=rplR PE=3 SV=1
Length = 120
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + + + +A A + KD+K+ L++ +D A A+G+++AERA+ A
Sbjct: 29 LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V + R F G+++A+ + + G+D
Sbjct: 89 GVTKVVF-DRSGYIFHGRVKALADAAREGGLD 119
>sp|B7L0T4|RL18_METC4 50S ribosomal protein L18 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=rplR PE=3 SV=1
Length = 120
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + + + +A A + KD+K+ L++ +D A A+G+++AERA+ A
Sbjct: 29 LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V + R F G+++A+ + + G+D
Sbjct: 89 GVTKVVF-DRSGYIFHGRVKALADAAREGGLD 119
>sp|Q0BUN4|RL18_GRABC 50S ribosomal protein L18 OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=rplR PE=3 SV=1
Length = 119
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 74 KHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDI 133
+ + F+ R A P L VF S R + A + + +A A + K ++ LR+ +D
Sbjct: 12 QRLRFQLRAKANGRP-RLSVFRSGRHIYAQVIDDAAGRTLAAASSLEKPLREQLRTGADR 70
Query: 134 PACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
A A+G+++AERA+ A V +A R + G+++A+ ++ + G+
Sbjct: 71 EAASAVGKLIAERAQAAGV-SAVVFDRGSYLYHGRVKALAEAAREGGL 117
>sp|Q1MIC5|RL18_RHIL3 50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rplR PE=3 SV=1
Length = 120
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 81 RTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIG 140
++VA P L V S + + A + V K +A A T KD++ L++ +D A +G
Sbjct: 20 KSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLASASTLEKDLRGSLKTGADTAAATVVG 78
Query: 141 RILAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGI 181
++LAERA +A V + +R F G+I+A+ ++ + G+
Sbjct: 79 KLLAERASKAGVTEVVF---DRGAFIYHGRIKALAEAAREGGL 118
>sp|A4SUX7|RL18_POLSQ 50S ribosomal protein L18 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rplR PE=3 SV=1
Length = 117
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 83 VAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRI 142
+A + L V S +SA + +K VA A T KD++ +++ + A IG++
Sbjct: 18 IAEAQANRLTVIRSNTHISAQVYSPCGTKVVAAASTMEKDLRQAIKNGGNAQAAAQIGKL 77
Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+AERA +A V ++ R ++ G+I+A+ ++ + G+
Sbjct: 78 VAERAVKAGVVDVAF-DRSGHRYHGRIKALAEAAREAGL 115
>sp|B6IRS2|RL18_RHOCS 50S ribosomal protein L18 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplR PE=3 SV=1
Length = 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 79 KQRTVAYMEPFT-----LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDI 133
KQR A ++ + L VF S + + A + +A A + KD++ L++ +DI
Sbjct: 12 KQRVRARIKKYGSGRPRLSVFRSSKHIYAQIIDDTAGHTLAAASSLDKDLREGLKTGADI 71
Query: 134 PACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
A A+G+++AERA V TA R F G+++A+ + + G+
Sbjct: 72 DAAKAVGKLIAERATAKGV-TAVVFDRGAYLFHGRVKALADAAREAGL 118
>sp|A9BG02|RL18_PETMO 50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=rplR PE=3 SV=1
Length = 122
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 66 EKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKA 125
+KK+ +H+ ++ E L VF S++ + A + +A A T K +K
Sbjct: 6 DKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQLKE 65
Query: 126 VLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
L D A +G+++AE+A+E + + R K+ GK++A+ ++ + G+
Sbjct: 66 KLEKTWDENAAKEVGKLIAEKAKEKGITEIVF-DRSGYKYHGKVKALAEAARETGL 120
>sp|Q92QF4|RL18_RHIME 50S ribosomal protein L18 OS=Rhizobium meliloti (strain 1021)
GN=rplR PE=3 SV=1
Length = 120
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 81 RTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIG 140
+ VA P L V S + + A + V K +A A T D+++ L++ +D A A+G
Sbjct: 20 KAVANGRP-RLSVHRSSKNIYAQIIDDVAGKTIASASTLDTDLRSSLKTGADTEAATAVG 78
Query: 141 RILAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGID 182
++LAERA +A + + +R F G+I+A+ ++ + G++
Sbjct: 79 KLLAERASKAGIKDVVF---DRGAFIYHGRIKALAEAAREGGLN 119
>sp|B1XSR7|RL18_POLNS 50S ribosomal protein L18 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rplR PE=3 SV=1
Length = 117
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 83 VAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRI 142
+A + L V S +SA + +K VA A T KD++ +++ S A IG++
Sbjct: 18 IAEAQANRLTVIRSNSHISAQVYSPCGTKVVAAASTMEKDLRQAIKNGSYAEAAKQIGKL 77
Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+AERA +A V ++ R ++ G+I+A+ ++ + G+
Sbjct: 78 VAERAVKAGVVDVAF-DRSGHRYHGRIKALAEAAREAGL 115
>sp|A6U875|RL18_SINMW 50S ribosomal protein L18 OS=Sinorhizobium medicae (strain WSM419)
GN=rplR PE=3 SV=1
Length = 120
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 81 RTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIG 140
+ VA P L V S + + A + V K +A A T D++ L++ +D A A+G
Sbjct: 20 KAVANGRP-RLSVHRSSKNIYAQIIDDVAGKTIASASTLDTDLRFSLKTGADTEAATAVG 78
Query: 141 RILAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGID 182
++LAERA +A V + +R F G+I+A+ ++ + G++
Sbjct: 79 KLLAERASKAGVKDVVF---DRGAFIYHGRIKALAEAAREGGLN 119
>sp|Q7NEG8|RL18_GLOVI 50S ribosomal protein L18 OS=Gloeobacter violaceus (strain PCC
7421) GN=rplR PE=3 SV=1
Length = 120
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 64 KKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDI 123
K ++K+ +H +++ E L V+ S R + A + V + + A T +
Sbjct: 2 KVDRKTATHRRHQRIRRKIAGTPEQPRLAVYRSNRHIYAQVIDDVHQRTLVAASTLEAPL 61
Query: 124 KAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
++ + A A+GR++AERA+E + TA R + G+++AV + + G+D
Sbjct: 62 RSGEEGTATCEAATAVGRLVAERAKEKGI-TAVVFDRGGKLYHGRVKAVADAAREAGLD 119
>sp|Q3ZBR7|RM18_BOVIN 39S ribosomal protein L18, mitochondrial OS=Bos taurus GN=MRPL18
PE=2 SV=1
Length = 180
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V S+ + A + HR + V A T IK L S + AC ++GR+LA+R EA
Sbjct: 81 LRVIRSQHHIEALVEHR-NGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEA 139
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ Y P + ++ + +I+ G+
Sbjct: 140 GINFMVYQPTPWEAASDSMKRLQIGMIEGGV 170
>sp|B0UHV3|RL18_METS4 50S ribosomal protein L18 OS=Methylobacterium sp. (strain 4-46)
GN=rplR PE=3 SV=1
Length = 120
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + + + + +A A + KD++A L++ +D A L +G+++AERA+ A
Sbjct: 29 LSVFRSSKQIYVQVIDDASGRTLAAASSLDKDLRARLKTGADKAAALEVGKLVAERAKAA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V T R + G+++A+ + + G++
Sbjct: 89 GV-TKVIFDRSGYLYHGRVKALADAAREGGLE 119
>sp|Q9CQL5|RM18_MOUSE 39S ribosomal protein L18, mitochondrial OS=Mus musculus GN=Mrpl18
PE=2 SV=1
Length = 180
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 76 ISFKQRTVAYMEP-----FTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSR 130
++ K+R A + P L V ++ V A + H + + V A T IK L S
Sbjct: 61 VARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEH-LNGQVVVSASTREWAIKKHLYST 119
Query: 131 SDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184
++ AC +IGR+LA+R EA + Y P + I+ + ++ ++G+ ++
Sbjct: 120 RNVVACESIGRVLAQRCLEAGINFMVYQPTPWEASSDSIKRLQNAMTESGVMLR 173
>sp|Q9H0U6|RM18_HUMAN 39S ribosomal protein L18, mitochondrial OS=Homo sapiens GN=MRPL18
PE=1 SV=1
Length = 180
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V ++ V A + H+ K V A T IK L S ++ AC +IGR+LA+R EA
Sbjct: 81 LRVIRTQHHVEALVEHQ-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEA 139
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184
+ Y P + ++ + ++ + G+ ++
Sbjct: 140 GINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLR 173
>sp|B5ZYV1|RL18_RHILW 50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplR PE=3 SV=1
Length = 120
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 81 RTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIG 140
++VA P L V S + + A + V K +A A T KD++ L++ +D A +G
Sbjct: 20 KSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDLRGSLKTGADTAAAALVG 78
Query: 141 RILAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGI 181
+++AERA +A V + +R F G+I+A+ + + G+
Sbjct: 79 KLVAERASKAGVTDVVF---DRGAFIYHGRIKALADAAREGGL 118
>sp|Q089N8|RL18_SHEFN 50S ribosomal protein L18 OS=Shewanella frigidimarina (strain NCIMB
400) GN=rplR PE=3 SV=1
Length = 116
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 113 VAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKI 169
+AVA T K +K +L+S ++ A A+G+I+AERA E V T ++ R K+ G++
Sbjct: 47 LAVASTVEKAVKELLKSTGNVDAAKAVGKIVAERAIEKGVATVAF-DRSGFKYHGRV 102
>sp|B8ISA1|RL18_METNO 50S ribosomal protein L18 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplR PE=3 SV=1
Length = 120
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + + + +A A + KD++A L++ +D A +G+++AERA+ A
Sbjct: 29 LSVFRSSKQIYVQVIDDANGRTLAAASSLDKDLRARLKTGADKAAAAEVGKLVAERAKAA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V T R + G+++A+ + + G+D
Sbjct: 89 GV-TKVIFDRSGYLYHGRVKALADAAREGGLD 119
>sp|B5YDV9|RL18_DICT6 50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1
Length = 122
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 64 KKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDI 123
K+ +K +H+ +++ + E L V+ S R++ A + + A + K+I
Sbjct: 4 KRSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEI 63
Query: 124 KAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGI 181
++ L+S +I A +G ++A+RA E + + +R F GK++A+ S G+
Sbjct: 64 RSQLKSTKNIEAAKLVGEVIAKRALEKGIKKVVF---DRGGFLYHGKVKALADSARAAGL 120
Query: 182 D 182
+
Sbjct: 121 E 121
>sp|Q15X57|RL18_PSEA6 50S ribosomal protein L18 OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=rplR PE=3 SV=1
Length = 117
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 98 RFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASY 157
R + A L S+ +A A T D++ ++S + A +A+G+ +AERA E + T ++
Sbjct: 33 RHIYAQLIAPCGSQVLAAASTVEADLRTTVKSTGNAEAAVAVGKAIAERAIEKGIKTVAF 92
Query: 158 TPRERDKFEGKIRAVVQSLIDNGI 181
R K+ G+++A+ + + G+
Sbjct: 93 -DRSGFKYHGRVKALADAAREAGL 115
>sp|Q5LW42|RL18_RUEPO 50S ribosomal protein L18 OS=Ruegeria pomeroyi (strain ATCC 700808
/ DSM 15171 / DSS-3) GN=rplR PE=3 SV=1
Length = 119
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 89 FTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAR 148
L V S + +SA L V +A A T KD+ V ++++ A +G +AERA+
Sbjct: 28 LRLSVHRSNKNISAQLIDDVRGVTLAAASTMEKDLGVV--GKNNVEAAKKVGAAIAERAK 85
Query: 149 EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183
+A V A Y R F GK++A+ + + G+ +
Sbjct: 86 KAGVEEA-YFDRGGFLFHGKVKALADAAREGGLKI 119
>sp|B3PWT7|RL18_RHIE6 50S ribosomal protein L18 OS=Rhizobium etli (strain CIAT 652)
GN=rplR PE=3 SV=1
Length = 120
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAV 126
+++ +HI ++VA P L V S + + A + V K +A A T KD++
Sbjct: 10 RRANRVRRHI----KSVANGRP-RLSVHRSSKNIYAQIIDDVAGKTLASASTLEKDLRGS 64
Query: 127 LRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGI 181
L++ +D A A+G+++AERA +A V + +R F G+I+A+ ++ + G+
Sbjct: 65 LKTGADTAAAAAVGKLVAERASKAGVSEVVF---DRGAFIYHGRIKALAEAAREGGL 118
>sp|Q6G2Y1|RL18_BARHE 50S ribosomal protein L18 OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rplR PE=3 SV=1
Length = 120
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L ++ S + + A + + + A T D+K L+S SD A A+G+++AERA++A
Sbjct: 29 LSIYRSNQNIYAQIIDDLRGCTLVSASTLDGDLKKSLKSGSDKEAAFAVGKLIAERAKKA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V + R + G+++A+ ++ + G++
Sbjct: 89 GVNEVVF-DRGAYVYHGRVKALAEAAREGGLN 119
>sp|A1KRI9|RL18_NEIMF 50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rplR PE=3
SV=1
Length = 117
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 83 VAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRI 142
+A ++ L VF S + A + K +A A T +++ L+S S++ A +G+
Sbjct: 18 IADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKR 77
Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+AE+A+ A V ++ R ++ G+++A+ ++ +NG+
Sbjct: 78 IAEKAKAAGVEKVAF-DRSGFQYHGRVKALAEAARENGL 115
>sp|Q7DDT0|RL18_NEIMB 50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rplR PE=3 SV=1
Length = 117
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 83 VAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRI 142
+A ++ L VF S + A + K +A A T +++ L+S S++ A +G+
Sbjct: 18 IADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKR 77
Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+AE+A+ A V ++ R ++ G+++A+ ++ +NG+
Sbjct: 78 IAEKAKAAGVEKVAF-DRSGFQYHGRVKALAEAARENGL 115
>sp|Q9JQQ6|RL18_NEIMA 50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rplR PE=3 SV=1
Length = 117
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 83 VAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRI 142
+A ++ L VF S + A + K +A A T +++ L+S S++ A +G+
Sbjct: 18 IADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKR 77
Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+AE+A+ A V ++ R ++ G+++A+ ++ +NG+
Sbjct: 78 IAEKAKAAGVEKVAF-DRSGFQYHGRVKALAEAARENGL 115
>sp|A9M3V0|RL18_NEIM0 50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=rplR PE=3 SV=1
Length = 117
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 83 VAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRI 142
+A ++ L VF S + A + K +A A T +++ L+S S++ A +G+
Sbjct: 18 IADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKR 77
Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+AE+A+ A V ++ R ++ G+++A+ ++ +NG+
Sbjct: 78 IAEKAKAAGVEKVAF-DRSGFQYHGRVKALAEAARENGL 115
>sp|Q5F5U3|RL18_NEIG1 50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rplR PE=3 SV=1
Length = 117
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 83 VAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRI 142
+A ++ L VF S + A + K +A A T +++ L+S S++ A +G+
Sbjct: 18 IADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKR 77
Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+AE+A+ A V ++ R ++ G+++A+ ++ +NG+
Sbjct: 78 IAEKAKAAGVEKVAF-DRSGFQYHGRVKALAEAARENGL 115
>sp|Q2K9K0|RL18_RHIEC 50S ribosomal protein L18 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rplR PE=3 SV=1
Length = 120
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAV 126
+++ +HI ++VA P L V S + + A + V K +A A T KD++
Sbjct: 10 RRANRVRRHI----KSVANGRP-RLSVHRSSKNIYAQIIDDVAGKTLASASTLDKDLRGS 64
Query: 127 LRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGI 181
L++ +D A A+G+++AERA +A V + +R F G+I+A+ ++ + G+
Sbjct: 65 LKTGADTAAAAAVGKLVAERASKAGVTDVVF---DRGAFIYHGRIKALAEAAREGGL 118
>sp|Q11HR8|RL18_MESSB 50S ribosomal protein L18 OS=Mesorhizobium sp. (strain BNC1)
GN=rplR PE=3 SV=1
Length = 119
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 79 KQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLA 138
K + VA P L V+ S + + A + V +A A + KD++ L++ +D+ A
Sbjct: 17 KLKAVATERP-RLSVYRSSKHIYAQVIDDVKGHTLAAASSLDKDLREKLKTGADVDAAGV 75
Query: 139 IGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
+G+++AERA++A + + R + G+++A+ + + G++
Sbjct: 76 VGKLIAERAKKAGIDKVVF-DRGPYIYHGRVKALADAAREGGLE 118
>sp|B1XJJ2|RL18_SYNP2 50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rplR PE=3 SV=1
Length = 120
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + A + + A T KD+K L S +I A A+G ++A+RA E
Sbjct: 29 LAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGELASGGNISASTAVGNLIAKRALEK 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
+ + R + + G+++A+ + + G+D
Sbjct: 89 GITKVVF-DRGGNLYHGRVKALADAAREAGLD 119
>sp|A9H3L5|RL18_GLUDA 50S ribosomal protein L18 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplR PE=3 SV=1
Length = 120
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L VF S + + A + V + +A A + K ++ L++ +D A +A+G+++AERA A
Sbjct: 29 LSVFRSGKNIYAQVIDDVAGRTLAAASSLDKALREQLKTGADSDAAVAVGKLVAERAVAA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
V + R + G+I+A+ ++ + G+
Sbjct: 89 GVSLVVF-DRGSYMYHGRIKALAEAAREGGL 118
>sp|Q6FZD8|RL18_BARQU 50S ribosomal protein L18 OS=Bartonella quintana (strain Toulouse)
GN=rplR PE=3 SV=1
Length = 120
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ S + + A + + A T D+K L+S SD A A+G+++AERA++A
Sbjct: 29 LSVYRSNQNIYAQIIDDSRGCTLVSASTLEGDLKKSLKSGSDKQAAFAVGKLIAERAKKA 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
V + R + G+++A+ ++ + G++
Sbjct: 89 GVNEVVF-DRGAYVYHGRVKALAEAAREGGLN 119
>sp|A4XLR4|RL18_CALS8 50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rplR PE=3 SV=2
Length = 124
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 63 YKK-EKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 121
YKK + K +H +++ E L V+ S +++ A + + A +
Sbjct: 4 YKKVNRNEKRLIRHKRIRKKVFGTAERPRLCVYKSLKYIYAQIIDDEKGHTLVAASSLEP 63
Query: 122 DIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+IK+ L S I A IGR++AERA+E + T R + G+++A+ + + G+
Sbjct: 64 EIKSRLTSTKSIEAAQYIGRVIAERAKEKGI-TKVVFDRGGYPYHGRVKALADAAREAGL 122
Query: 182 D 182
+
Sbjct: 123 E 123
>sp|A1USR0|RL18_BARBK 50S ribosomal protein L18 OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=rplR PE=3 SV=1
Length = 120
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ S + + A + V +A A T + +K LRS SD A A+G+++AERA+++
Sbjct: 29 LSVYRSNQNIYAQIIDDVRGCTLASACTLEEGMKKSLRSGSDKKAAFAVGKLIAERAKKS 88
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ + R + G+++A+ ++ + G+
Sbjct: 89 GINEVVF-DRGAYVYHGRVKALAEAAREGGL 118
>sp|Q1GK13|RL18_RUEST 50S ribosomal protein L18 OS=Ruegeria sp. (strain TM1040) GN=rplR
PE=3 SV=1
Length = 119
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V S + +S L V +A A T KD+ V +++I A +G ++AERA+ A
Sbjct: 30 LSVHRSNKNISVQLIDDVKGVTLAAASTLEKDLGFV--GKNNIEAATKVGSVIAERAKAA 87
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183
V T +Y R + GK++A+ + + G+ +
Sbjct: 88 GV-TEAYFDRGGFLYHGKVKALADAAREGGLKI 119
>sp|A4IZR8|RL18_FRATW 50S ribosomal protein L18 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ + R V A + S + A T KD+KA + ++ + +G I+A+R +E
Sbjct: 26 LCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEIIADRCKEK 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ ++ R K+ G+++A+V++ ++G+
Sbjct: 86 GISQVAF-DRSGYKYHGRVKALVEAAREHGL 115
>sp|Q5NHV2|RL18_FRATT 50S ribosomal protein L18 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ + R V A + S + A T KD+KA + ++ + +G I+A+R +E
Sbjct: 26 LCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEIIADRCKEK 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ ++ R K+ G+++A+V++ ++G+
Sbjct: 86 GISQVAF-DRSGYKYHGRVKALVEAAREHGL 115
>sp|Q0BNR1|RL18_FRATO 50S ribosomal protein L18 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ + R V A + S + A T KD+KA + ++ + +G I+A+R +E
Sbjct: 26 LCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEIIADRCKEK 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ ++ R K+ G+++A+V++ ++G+
Sbjct: 86 GISQVAF-DRSGYKYHGRVKALVEAAREHGL 115
>sp|B2SDW9|RL18_FRATM 50S ribosomal protein L18 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ + R V A + S + A T KD+KA + ++ + +G I+A+R +E
Sbjct: 26 LCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEIIADRCKEK 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ ++ R K+ G+++A+V++ ++G+
Sbjct: 86 GISQVAF-DRSGYKYHGRVKALVEAAREHGL 115
>sp|Q2A5F4|RL18_FRATH 50S ribosomal protein L18 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ + R V A + S + A T KD+KA + ++ + +G I+A+R +E
Sbjct: 26 LCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEIIADRCKEK 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ ++ R K+ G+++A+V++ ++G+
Sbjct: 86 GISQVAF-DRSGYKYHGRVKALVEAAREHGL 115
>sp|A7N9U1|RL18_FRATF 50S ribosomal protein L18 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ + R V A + S + A T KD+KA + ++ + +G I+A+R +E
Sbjct: 26 LCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEIIADRCKEK 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ ++ R K+ G+++A+V++ ++G+
Sbjct: 86 GISQVAF-DRSGYKYHGRVKALVEAAREHGL 115
>sp|Q14JA4|RL18_FRAT1 50S ribosomal protein L18 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
L V+ + R V A + S + A T KD+KA + ++ + +G I+A+R +E
Sbjct: 26 LCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEIIADRCKEK 85
Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
+ ++ R K+ G+++A+V++ ++G+
Sbjct: 86 GISQVAF-DRSGYKYHGRVKALVEAAREHGL 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,949,848
Number of Sequences: 539616
Number of extensions: 2533826
Number of successful extensions: 6612
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 6438
Number of HSP's gapped (non-prelim): 373
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)