Query 029747
Match_columns 188
No_of_seqs 115 out of 1096
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_O 50S ribosomal protein L 100.0 3.5E-41 1.2E-45 261.6 10.6 115 67-183 2-116 (116)
2 3bbo_Q Ribosomal protein L18; 100.0 3.5E-41 1.2E-45 274.5 5.8 116 67-183 44-161 (161)
3 1ovy_A 50S ribosomal protein L 100.0 6.6E-40 2.3E-44 256.0 6.9 114 67-183 7-120 (120)
4 3v2d_S 50S ribosomal protein L 100.0 1.5E-39 5E-44 251.5 8.2 110 67-183 3-112 (112)
5 2zjr_L 50S ribosomal protein L 100.0 5.9E-38 2E-42 243.1 2.4 109 68-183 3-114 (114)
6 1vq8_N 50S ribosomal protein L 100.0 6.7E-32 2.3E-36 224.4 11.2 114 67-185 14-132 (187)
7 3j21_O 50S ribosomal protein L 100.0 9.8E-32 3.4E-36 225.7 7.2 116 66-185 13-133 (203)
8 2zkr_n 60S ribosomal protein L 99.9 2.3E-25 7.7E-30 195.4 12.9 98 87-185 47-175 (297)
9 3u5e_D 60S ribosomal protein L 99.9 7.1E-24 2.4E-28 186.0 10.1 99 86-185 46-175 (297)
10 4a17_M RPL5, 60S ribosomal pro 99.9 1.9E-23 6.4E-28 183.5 11.2 99 86-185 46-175 (301)
11 3iz5_Q 60S ribosomal protein L 99.8 1.8E-20 6.3E-25 164.7 6.9 94 87-184 51-174 (304)
12 2vqe_K 30S ribosomal protein S 97.3 0.0013 4.5E-08 51.3 9.5 95 87-187 15-109 (129)
13 3bbn_K Ribosomal protein S11; 97.1 0.0012 4.1E-08 52.4 6.9 95 87-187 28-122 (140)
14 3r8n_K 30S ribosomal protein S 97.0 0.0029 1E-07 48.6 8.5 91 90-186 8-98 (117)
15 3j20_M 30S ribosomal protein S 96.9 0.008 2.7E-07 47.5 10.3 96 88-186 14-115 (137)
16 2xzm_K RPS14E; ribosome, trans 96.7 0.0071 2.4E-07 48.5 8.1 98 87-187 27-130 (151)
17 3u5c_O RP59A, 40S ribosomal pr 95.7 0.021 7.3E-07 45.0 6.2 96 87-185 13-114 (137)
18 4fnq_A Alpha-galactosidase AGA 77.3 4.2 0.00014 38.9 6.5 46 143-188 351-413 (729)
19 2zxd_A Alpha-L-fucosidase, put 69.7 7.2 0.00025 35.5 5.9 47 141-187 108-172 (455)
20 2wvv_A Alpha-L-fucosidase; alp 64.0 12 0.00041 33.8 6.1 47 141-187 81-145 (450)
21 3hcw_A Maltose operon transcri 62.4 18 0.00063 28.8 6.4 47 139-185 118-166 (295)
22 1zy9_A Alpha-galactosidase; TM 59.7 11 0.00037 35.1 5.1 47 141-188 215-271 (564)
23 3ues_A Alpha-1,3/4-fucosidase; 59.1 20 0.00067 32.9 6.7 47 141-187 65-132 (478)
24 3gv0_A Transcriptional regulat 57.1 22 0.00075 28.1 5.9 47 138-185 113-162 (288)
25 2w4l_A DCMP deaminse, deoxycyt 56.8 17 0.00059 28.8 5.2 40 144-185 111-151 (178)
26 3eyp_A Putative alpha-L-fucosi 55.5 20 0.00069 32.7 6.1 47 141-187 57-124 (469)
27 3gza_A Putative alpha-L-fucosi 55.2 20 0.00069 32.6 6.0 47 141-187 62-129 (443)
28 3hg3_A Alpha-galactosidase A; 54.5 28 0.00095 31.3 6.7 58 131-188 33-105 (404)
29 2h0a_A TTHA0807, transcription 53.8 25 0.00086 27.3 5.7 44 140-184 102-153 (276)
30 3clk_A Transcription regulator 53.8 23 0.0008 27.9 5.6 45 139-184 112-159 (290)
31 3cs3_A Sugar-binding transcrip 53.3 23 0.00078 27.7 5.4 45 139-184 105-152 (277)
32 1dbq_A Purine repressor; trans 51.7 22 0.00074 27.8 5.0 44 140-184 114-160 (289)
33 3o74_A Fructose transport syst 50.9 27 0.00091 27.0 5.4 47 139-185 107-155 (272)
34 3gyb_A Transcriptional regulat 50.8 21 0.00071 27.9 4.8 46 138-184 104-150 (280)
35 3e61_A Putative transcriptiona 50.2 19 0.00064 28.1 4.4 47 137-184 107-156 (277)
36 3k4h_A Putative transcriptiona 49.7 21 0.00071 28.0 4.6 45 139-184 118-165 (292)
37 1byk_A Protein (trehalose oper 49.6 44 0.0015 25.6 6.4 45 139-184 102-150 (255)
38 3g85_A Transcriptional regulat 49.5 20 0.00068 28.1 4.5 45 139-184 114-161 (289)
39 3k9c_A Transcriptional regulat 49.0 27 0.00091 27.7 5.2 45 139-184 113-159 (289)
40 3kke_A LACI family transcripti 48.8 22 0.00076 28.4 4.7 45 139-184 118-165 (303)
41 3tb6_A Arabinose metabolism tr 48.2 24 0.00083 27.5 4.8 47 138-184 123-170 (298)
42 2qu7_A Putative transcriptiona 48.2 23 0.0008 27.8 4.7 45 139-184 109-156 (288)
43 3rot_A ABC sugar transporter, 48.1 32 0.0011 27.2 5.6 46 139-185 115-165 (297)
44 3d8u_A PURR transcriptional re 47.9 24 0.00082 27.4 4.7 45 139-184 107-154 (275)
45 3qk7_A Transcriptional regulat 47.8 24 0.00081 28.1 4.7 46 138-184 112-160 (294)
46 3huu_A Transcription regulator 47.7 23 0.00079 28.2 4.7 46 138-184 130-178 (305)
47 2fvy_A D-galactose-binding per 47.7 40 0.0014 26.5 6.0 55 130-184 110-174 (309)
48 3egc_A Putative ribose operon 47.7 24 0.00081 27.8 4.7 45 139-184 112-159 (291)
49 3brq_A HTH-type transcriptiona 47.2 23 0.00077 27.7 4.5 44 140-184 127-173 (296)
50 3cc1_A BH1870 protein, putativ 46.7 38 0.0013 30.1 6.3 58 130-187 25-114 (433)
51 4do4_A Alpha-N-acetylgalactosa 46.4 32 0.0011 29.4 5.6 56 133-188 35-104 (400)
52 2hc5_A ORF 99, hypothetical pr 46.1 30 0.001 26.0 4.8 40 76-115 45-84 (117)
53 1szn_A Alpha-galactosidase; (b 45.0 32 0.0011 30.6 5.5 58 131-188 26-98 (417)
54 2h6r_A Triosephosphate isomera 44.9 12 0.00042 30.1 2.6 48 139-186 70-117 (219)
55 3b09_A Peptidyl-prolyl CIS-tra 44.7 24 0.00084 25.1 3.9 22 133-154 30-51 (88)
56 3qi7_A Putative transcriptiona 44.3 30 0.001 30.9 5.2 46 139-185 143-193 (371)
57 3g1w_A Sugar ABC transporter; 44.3 29 0.00099 27.4 4.7 46 139-185 112-161 (305)
58 3miz_A Putative transcriptiona 44.2 21 0.00073 28.3 3.9 45 138-183 117-164 (301)
59 3c3k_A Alanine racemase; struc 44.0 26 0.0009 27.6 4.4 44 140-184 112-158 (285)
60 3dbi_A Sugar-binding transcrip 43.2 30 0.001 28.0 4.8 46 138-184 167-215 (338)
61 3ctp_A Periplasmic binding pro 42.6 34 0.0012 27.7 5.0 44 140-184 160-206 (330)
62 1uas_A Alpha-galactosidase; TI 42.6 29 0.00098 29.9 4.7 57 131-188 23-95 (362)
63 3bbl_A Regulatory protein of L 41.6 32 0.0011 27.1 4.6 48 132-184 109-159 (287)
64 4h41_A Putative alpha-L-fucosi 41.2 31 0.0011 30.3 4.8 41 144-185 60-118 (340)
65 2rgy_A Transcriptional regulat 40.6 30 0.001 27.4 4.2 43 140-183 116-161 (290)
66 2o20_A Catabolite control prot 40.6 34 0.0012 27.7 4.7 45 139-184 167-214 (332)
67 3e3m_A Transcriptional regulat 39.7 52 0.0018 27.0 5.7 47 138-184 173-222 (355)
68 3tev_A Glycosyl hyrolase, fami 39.6 29 0.00099 30.5 4.3 56 127-182 101-174 (351)
69 1qpz_A PURA, protein (purine n 39.0 35 0.0012 27.8 4.5 44 140-184 165-211 (340)
70 3m0z_A Putative aldolase; MCSG 38.9 72 0.0025 27.2 6.5 39 146-184 153-191 (249)
71 2fep_A Catabolite control prot 38.8 43 0.0015 26.4 4.9 44 140-184 121-168 (289)
72 3ff4_A Uncharacterized protein 38.5 45 0.0015 24.7 4.7 34 144-183 75-108 (122)
73 2yfo_A Alpha-galactosidase-suc 38.0 34 0.0012 32.7 4.9 46 143-188 351-413 (720)
74 3ksm_A ABC-type sugar transpor 36.9 47 0.0016 25.5 4.8 52 132-184 107-162 (276)
75 3a5v_A Alpha-galactosidase; be 36.8 55 0.0019 28.7 5.7 57 131-188 23-95 (397)
76 3o1i_D Periplasmic protein TOR 36.8 38 0.0013 26.5 4.3 46 138-184 117-170 (304)
77 3hs3_A Ribose operon repressor 36.0 42 0.0015 26.3 4.4 45 139-185 110-157 (277)
78 2d59_A Hypothetical protein PH 36.0 45 0.0015 24.8 4.4 34 144-183 94-127 (144)
79 2h3h_A Sugar ABC transporter, 35.2 52 0.0018 26.2 4.9 50 132-184 105-157 (313)
80 2xn2_A Alpha-galactosidase; hy 35.0 59 0.002 31.1 6.0 47 142-188 354-417 (732)
81 2nyt_A Probable C->U-editing e 35.0 65 0.0022 25.9 5.4 42 144-185 98-144 (190)
82 4fe7_A Xylose operon regulator 34.6 79 0.0027 26.7 6.2 48 137-185 124-176 (412)
83 1y81_A Conserved hypothetical 34.6 46 0.0016 24.8 4.2 33 145-183 87-119 (138)
84 2rjo_A Twin-arginine transloca 34.4 67 0.0023 25.9 5.5 50 132-184 118-171 (332)
85 2fqx_A Membrane lipoprotein TM 34.2 72 0.0025 26.1 5.8 53 131-185 108-163 (318)
86 3gbv_A Putative LACI-family tr 34.2 42 0.0014 26.2 4.1 46 139-185 120-174 (304)
87 3jvd_A Transcriptional regulat 33.6 52 0.0018 26.8 4.8 44 138-182 160-206 (333)
88 2hvw_A Deoxycytidylate deamina 33.6 38 0.0013 27.1 3.8 38 144-186 137-174 (184)
89 3m6y_A 4-hydroxy-2-oxoglutarat 33.0 74 0.0025 27.5 5.6 39 146-184 176-214 (275)
90 3noy_A 4-hydroxy-3-methylbut-2 32.4 30 0.001 31.2 3.2 56 130-186 67-139 (366)
91 3mi6_A Alpha-galactosidase; NE 32.3 74 0.0025 30.9 6.2 48 141-188 350-414 (745)
92 2duw_A Putative COA-binding pr 31.6 42 0.0014 25.1 3.6 33 145-183 88-120 (145)
93 3snr_A Extracellular ligand-bi 31.5 85 0.0029 24.9 5.6 47 138-184 121-167 (362)
94 3l49_A ABC sugar (ribose) tran 31.2 76 0.0026 24.6 5.2 44 139-183 110-159 (291)
95 2hsg_A Glucose-resistance amyl 29.9 63 0.0022 26.0 4.6 45 139-184 164-212 (332)
96 3lrk_A Alpha-galactosidase 1; 29.6 57 0.002 30.1 4.7 58 131-188 44-115 (479)
97 1vq2_A DCMP deaminase, deoxycy 29.3 52 0.0018 26.0 3.9 38 144-185 136-173 (193)
98 3fwz_A Inner membrane protein 29.2 1.3E+02 0.0046 21.4 5.9 38 137-183 16-53 (140)
99 2iks_A DNA-binding transcripti 28.3 79 0.0027 24.8 4.8 44 139-183 125-171 (293)
100 3h5t_A Transcriptional regulat 27.5 50 0.0017 27.1 3.7 46 138-183 175-239 (366)
101 2cw6_A Hydroxymethylglutaryl-C 27.3 82 0.0028 26.2 5.0 43 144-187 86-141 (298)
102 2yxo_A Histidinol phosphatase; 27.2 1.4E+02 0.0048 23.4 6.2 21 142-162 20-40 (267)
103 2yb1_A Amidohydrolase; HET: AM 27.0 87 0.003 25.9 5.1 39 143-184 22-60 (292)
104 4evq_A Putative ABC transporte 26.7 1.1E+02 0.0039 24.6 5.6 47 138-184 137-183 (375)
105 1ydn_A Hydroxymethylglutaryl-C 26.7 80 0.0027 26.1 4.8 42 144-186 85-139 (295)
106 2ftp_A Hydroxymethylglutaryl-C 26.4 86 0.0029 26.2 5.0 44 143-187 88-144 (302)
107 3kjx_A Transcriptional regulat 26.3 49 0.0017 26.9 3.4 44 140-184 173-220 (344)
108 1iuk_A Hypothetical protein TT 26.0 67 0.0023 23.8 3.8 34 144-183 87-120 (140)
109 1gvf_A Tagatose-bisphosphate a 25.9 1.5E+02 0.0051 25.3 6.5 45 142-187 88-135 (286)
110 3h5o_A Transcriptional regulat 25.6 1E+02 0.0034 25.0 5.1 43 139-181 165-208 (339)
111 1owl_A Photolyase, deoxyribodi 25.5 1.2E+02 0.0043 27.0 6.1 47 140-187 81-128 (484)
112 1weh_A Conserved hypothetical 25.3 1E+02 0.0035 23.9 4.9 39 133-181 19-57 (171)
113 3bil_A Probable LACI-family tr 25.3 93 0.0032 25.4 4.9 46 132-182 168-216 (348)
114 4fn4_A Short chain dehydrogena 25.2 1.4E+02 0.0049 24.4 6.1 44 136-184 16-59 (254)
115 1wek_A Hypothetical protein TT 25.2 1.3E+02 0.0043 24.5 5.6 39 133-181 55-93 (217)
116 3hut_A Putative branched-chain 24.7 1.1E+02 0.0037 24.6 5.1 45 140-184 127-171 (358)
117 2dri_A D-ribose-binding protei 24.6 1.1E+02 0.0039 23.6 5.1 50 132-184 105-157 (271)
118 3llv_A Exopolyphosphatase-rela 24.6 1.7E+02 0.0059 20.4 5.8 23 138-161 16-38 (141)
119 3sbx_A Putative uncharacterize 24.5 89 0.0031 25.0 4.5 41 133-182 30-70 (189)
120 3d02_A Putative LACI-type tran 24.1 1.2E+02 0.0042 23.5 5.3 44 139-183 112-160 (303)
121 3e38_A Two-domain protein cont 23.8 82 0.0028 27.3 4.5 41 143-183 39-88 (343)
122 3sg0_A Extracellular ligand-bi 23.7 1.2E+02 0.004 24.4 5.2 47 138-184 145-191 (386)
123 1jye_A Lactose operon represso 23.7 85 0.0029 25.6 4.4 44 139-183 166-212 (349)
124 3q94_A Fructose-bisphosphate a 23.5 1.4E+02 0.0048 25.6 5.8 44 143-187 95-141 (288)
125 3nkl_A UDP-D-quinovosamine 4-d 23.5 1.8E+02 0.006 20.4 5.6 40 145-186 59-98 (141)
126 3brs_A Periplasmic binding pro 23.5 88 0.003 24.2 4.3 43 140-183 117-164 (289)
127 3sju_A Keto reductase; short-c 23.0 1.5E+02 0.0052 23.6 5.7 43 137-184 34-76 (279)
128 3qy7_A Tyrosine-protein phosph 22.9 80 0.0027 26.0 4.1 46 141-186 23-76 (262)
129 2x41_A Beta-glucosidase; hydro 22.7 1E+02 0.0035 29.3 5.2 56 127-182 87-159 (721)
130 3awd_A GOX2181, putative polyo 22.3 1.9E+02 0.0066 22.1 6.1 42 136-182 22-63 (260)
131 3tfo_A Putative 3-oxoacyl-(acy 22.2 2E+02 0.007 22.9 6.4 44 136-184 13-56 (264)
132 1gud_A ALBP, D-allose-binding 22.1 1.1E+02 0.0037 24.0 4.6 50 131-184 113-168 (288)
133 3abz_A Beta-glucosidase I; gly 21.9 1.4E+02 0.0047 29.3 6.0 56 127-182 70-142 (845)
134 2fn9_A Ribose ABC transporter, 21.9 1.1E+02 0.0038 23.7 4.5 53 132-184 107-166 (290)
135 2isw_A Putative fructose-1,6-b 21.7 1.8E+02 0.0061 25.4 6.2 45 142-187 89-136 (323)
136 3l6u_A ABC-type sugar transpor 21.6 68 0.0023 24.9 3.2 54 131-184 111-170 (293)
137 1yx1_A Hypothetical protein PA 21.5 96 0.0033 24.3 4.1 41 144-185 90-130 (264)
138 3a21_A Putative secreted alpha 21.4 1E+02 0.0034 28.5 4.8 59 130-188 25-98 (614)
139 1ydo_A HMG-COA lyase; TIM-barr 21.3 1E+02 0.0035 26.1 4.5 36 144-179 163-198 (307)
140 1pea_A Amidase operon; gene re 21.2 1.3E+02 0.0044 24.7 5.0 44 140-184 128-172 (385)
141 2wje_A CPS4B, tyrosine-protein 21.2 49 0.0017 26.4 2.3 19 141-159 27-45 (247)
142 3uw2_A Phosphoglucomutase/phos 21.0 2.6E+02 0.0088 25.2 7.3 57 127-185 37-95 (485)
143 3ble_A Citramalate synthase fr 20.9 1.5E+02 0.0051 25.3 5.5 36 143-178 174-209 (337)
144 3n9r_A Fructose-bisphosphate a 20.7 1.9E+02 0.0065 25.0 6.1 45 142-187 88-135 (307)
145 4eyg_A Twin-arginine transloca 20.7 1.7E+02 0.006 23.3 5.6 46 138-184 125-171 (368)
146 1rvg_A Fructose-1,6-bisphospha 20.5 2.2E+02 0.0076 24.6 6.5 45 142-187 86-133 (305)
147 2x7x_A Sensor protein; transfe 20.3 90 0.0031 25.0 3.8 50 132-184 110-163 (325)
148 1u3d_A Cryptochrome 1 apoprote 20.2 1.4E+02 0.0049 26.8 5.4 46 141-187 91-137 (509)
149 1ydh_A AT5G11950; structural g 20.1 1.4E+02 0.0049 24.2 5.0 39 134-181 28-66 (216)
150 2jah_A Clavulanic acid dehydro 20.0 2.3E+02 0.0078 22.0 6.1 41 137-182 17-57 (247)
151 3sc4_A Short chain dehydrogena 20.0 1.6E+02 0.0054 23.6 5.2 47 137-184 19-68 (285)
No 1
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=3.5e-41 Score=261.62 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=110.5
Q ss_pred hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747 67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER 146 (188)
Q Consensus 67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R 146 (188)
|+..|.+||.|+|+++.+ .++|||+|++||+|||||||||++|+||+||||.|+++++++.+++|++||+.||++||+|
T Consensus 2 ~~~~r~~r~~r~R~ki~~-~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~R 80 (116)
T 3r8s_O 2 KKSARIRRATRARRKLQE-LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAER 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc-CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHH
Confidence 355677899999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
|+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus 81 al~~GI~~vvf-Drgg~~yhGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 81 ALEKGIKDVSF-DRSGFQYHGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHTTTCCCCEE-ECTTSCSSSHHHHHHHHHHHTTCCC
T ss_pred HHHCCCCEEEE-ecCCCcccHHHHHHHHHHHHhCCCC
Confidence 99999999999 7999999999999999999999987
No 2
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.5e-41 Score=274.46 Aligned_cols=116 Identities=19% Similarity=0.345 Sum_probs=111.0
Q ss_pred hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhc--CCCCHHHHHHHHHHHH
Q 029747 67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLR--SRSDIPACLAIGRILA 144 (188)
Q Consensus 67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~--s~~n~~AA~~vG~lLA 144 (188)
++..|.+||.|+|+++.++.++|||+|++||+|||||||||.+|+||++|||+||++++.++ +++|++||+.||++||
T Consensus 44 k~~~R~rR~~RiR~ki~gt~~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liA 123 (161)
T 3bbo_Q 44 RREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIA 123 (161)
T ss_dssp CCCCGGGTSCCSCSGGGGSSSCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHhhccCCCCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999997666 7899999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
+||+++||++|+| |||+|+|||||+||+|++||+||+|
T Consensus 124 eRA~e~GI~~VvF-DRgg~~YhGRVkAladaaRe~GL~F 161 (161)
T 3bbo_Q 124 SACLEKGITKVAF-DRGGYPYHGRVKALADAAREKGLQF 161 (161)
T ss_dssp SHHHHTSSCCCCC-CCSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred HHHHHCCCCEEEE-eCCCCcchHHHHHHHHHHHHhCCcC
Confidence 9999999999999 7999999999999999999999987
No 3
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=6.6e-40 Score=255.96 Aligned_cols=114 Identities=21% Similarity=0.386 Sum_probs=94.5
Q ss_pred hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747 67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER 146 (188)
Q Consensus 67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R 146 (188)
+++.|.+||.|+|+++.++.++|||+|++||+|||||||||++|+||+||||.||+++ +++++|++||+.||++||+|
T Consensus 7 ~~~~r~~r~~R~r~ki~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~~vG~llA~R 84 (120)
T 1ovy_A 7 RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKR 84 (120)
T ss_dssp -----------------CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999987 67889999999999999999
Q ss_pred HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
|+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus 85 al~~GI~~vvf-Drgg~~yhgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 85 ALEKGIKQVVF-DRGGYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp HHHHSSSCCCC-CSTTCSSCSSTHHHHHHHHHHHCCC
T ss_pred HHHCCCCEEEE-ecCCccccHHHHHHHHHHHHhCCcC
Confidence 99999999999 7999999999999999999999987
No 4
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=1.5e-39 Score=251.47 Aligned_cols=110 Identities=17% Similarity=0.312 Sum_probs=104.8
Q ss_pred hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747 67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER 146 (188)
Q Consensus 67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R 146 (188)
+++.|.+||.|+|+++.++. +|||+|++||+|||||||||++|+||+||||.||+++ ++|++||+.||++||+|
T Consensus 3 ~~~~r~~r~~r~r~ki~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~llA~r 76 (112)
T 3v2d_S 3 RLTAYERRKFRVRNRIKRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEK 76 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHHHHH
Confidence 45667789999999999998 9999999999999999999999999999999999975 78999999999999999
Q ss_pred HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
|+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus 77 a~~~GI~~vvf-Drgg~~yhGrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 77 ALALGIKQVAF-DRGPYKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHTTTCCBCEE-ECTTSCSCSSTTHHHHHHHHTTCBC
T ss_pred HHHCCCCEEEE-ecCCCcccHHHHHHHHHHHHcCCCC
Confidence 99999999999 7999999999999999999999987
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=100.00 E-value=5.9e-38 Score=243.14 Aligned_cols=109 Identities=17% Similarity=0.367 Sum_probs=98.1
Q ss_pred hhccccchhhhccccccc---CCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHH
Q 029747 68 KSKNTTKHISFKQRTVAY---MEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILA 144 (188)
Q Consensus 68 ~~kr~~rh~r~rkr~~~~---~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA 144 (188)
.++|.+||.|+|+++.++ .++|||+|++||+|||||||||++|+||+||||.| + .+++|++||+.||++||
T Consensus 3 ~~~r~~r~~r~r~ki~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~llA 76 (114)
T 2zjr_L 3 TATTIRRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGKALA 76 (114)
T ss_dssp -----CHHHHHHHHHHSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHHHHH
Confidence 356788999999999999 99999999999999999999999999999999999 3 46889999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
+||+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus 77 ~Ral~~GI~~vvf-Drgg~~yhgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 77 AAAAEKGIKQVVF-DRGSYKYHGRVKALADAAREGGLDF 114 (114)
T ss_dssp HHHHTTCCCCCEE-CCCSSCSCSHHHHHHHHHHHHC---
T ss_pred HHHHHCCCCEEEE-ecCCccccHHHHHHHHHHHHhCCcC
Confidence 9999999999999 7999999999999999999999987
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=99.97 E-value=6.7e-32 Score=224.39 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=99.3
Q ss_pred hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEE--ECCCCeEEEEEecchhhhhhhh-cCCCCHHHHHHHHHHH
Q 029747 67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLT--HRVTSKQVAVAGTNSKDIKAVL-RSRSDIPACLAIGRIL 143 (188)
Q Consensus 67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVi--dd~~g~tVaSAST~Ek~ik~~L-~s~~n~~AA~~vG~lL 143 (188)
+++-++..|.|.|-- ..++|||+|++||+||||||| ||++|+|||||||.||+ +..+ .+++|++||+.||++|
T Consensus 14 rregkTdy~~R~rl~---~~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~ll 89 (187)
T 1vq8_N 14 RREARTDYHQRLRLL---KSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLA 89 (187)
T ss_dssp HHTTCCCHHHHHHHH---TTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHH---hcCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHH
Confidence 344444444444322 368899999999999999999 99999999999999999 6444 6789999999999999
Q ss_pred HHHHHhcCCCEEEEecCCCCchh--hHHHHHHHHHHHCCcEeEe
Q 029747 144 AERAREADVYTASYTPRERDKFE--GKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyh--GrVkA~adalRe~GL~f~~ 185 (188)
|+||+++||++|+| |+|+++|| |||+|+++++||+||+|+.
T Consensus 90 A~Ral~kGI~~vvf-Drgg~~yh~GgRV~Ala~gAre~GL~fph 132 (187)
T 1vq8_N 90 GLRAQEAGVEEAVL-DIGLNSPTPGSKVFAIQEGAIDAGLDIPH 132 (187)
T ss_dssp HHHHHHTTCCBCEE-ECTTSCCCTTCHHHHHHHHHHHTTCBCCC
T ss_pred HHHHHHCCCCEEEE-cCCCceeccchHHHHHHHHhhcCCEeccC
Confidence 99999999999999 79999999 9999999999999999974
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=9.8e-32 Score=225.75 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=103.6
Q ss_pred hhhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEE--CCCCeEEEEEecchhhh-hhhhcCCCCHHHHHHHHHH
Q 029747 66 EKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTH--RVTSKQVAVAGTNSKDI-KAVLRSRSDIPACLAIGRI 142 (188)
Q Consensus 66 ~~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVid--d~~g~tVaSAST~Ek~i-k~~L~s~~n~~AA~~vG~l 142 (188)
.+++-+.++|.|.|-.+ ..+|||+|++||+|||||||| +++|+||+||||.||++ .+++.+++|++||+.||++
T Consensus 13 rRregkt~y~~R~rl~~---~~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~l 89 (203)
T 3j21_O 13 RRREGKTNYRKRLKLLK---SGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLL 89 (203)
T ss_dssp HHHHTCCCHHHHHHHHT---TCCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHh---cCCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHH
Confidence 45566677777776554 468999999999999999998 78899999999999996 4666789999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747 143 LAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~ 185 (188)
||+||+++||++|+| |+|+++| ||||+|+++++||+||+|+.
T Consensus 90 lA~Ral~kGI~~vvf-Drgg~~y~~hgRV~Ala~gAre~GL~iPh 133 (203)
T 3j21_O 90 IGYKAKQAGIEEAIL-DIGLHPPVRGSSVFAVLKGAVDAGLNVPH 133 (203)
T ss_dssp SSSSTTSSCCCCCEE-ECCSSCCCTTSHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHhCCCCEEEE-ecCcceeccCcchhhhhhhcccCCeeccc
Confidence 999999999999999 7999999 89999999999999999864
No 8
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.93 E-value=2.3e-25 Score=195.37 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=90.7
Q ss_pred CCceEEEEecCCeEEEEEEECC--CCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------------
Q 029747 87 EPFTLDVFISKRFVSASLTHRV--TSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA-------------- 150 (188)
Q Consensus 87 ~~pRL~V~kSNkhiyAqVidd~--~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea-------------- 150 (188)
.+|||+|++||+|||||||++. +|+|||||||.|+.-.++..+++|.+||+.+|.+||+||+++
T Consensus 47 ~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~ 126 (297)
T 2zkr_n 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVT 126 (297)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSS
T ss_pred CCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccc
Confidence 5699999999999999999977 999999999999993344446899999999999999999999
Q ss_pred -------------CCCEEEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747 151 -------------DVYTASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 151 -------------GI~~vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~ 185 (188)
||.+++| |+|+++| ||||+|++++++|+||+|+-
T Consensus 127 g~~~~ve~~~~~~gi~~vvf-DrGl~ryttggRVfa~akGArDgGL~~Ph 175 (297)
T 2zkr_n 127 GDEYNVESIDGQPGAFTCYL-DAGLARTTTGNKVFGALKGAVDGGLSIPH 175 (297)
T ss_dssp SCCCCCSSSCSSSCCCBEEE-ECTTSCCCTTCHHHHHHHHHHHTTCBCCC
T ss_pred cccccccccccCCCceEEEE-ecCCcccCCCchHHHHHHHHHhcCcccCC
Confidence 9999999 7999999 99999999999999999863
No 9
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.90 E-value=7.1e-24 Score=186.01 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=91.5
Q ss_pred CCCceEEEEecCCeEEEEEEEC--CCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------CCCE-
Q 029747 86 MEPFTLDVFISKRFVSASLTHR--VTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA--------DVYT- 154 (188)
Q Consensus 86 ~~~pRL~V~kSNkhiyAqVidd--~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea--------GI~~- 154 (188)
..+|||+|++||+|||||||++ ++|+|||||||.|++..++..+++|++||+.||.+||+||+++ |+++
T Consensus 46 t~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~ 125 (297)
T 3u5e_D 46 TPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEV 125 (297)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSC
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCcccc
Confidence 3689999999999999999998 6889999999999997776567889999999999999999999 9987
Q ss_pred ------------------EEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747 155 ------------------ASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 155 ------------------vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~ 185 (188)
++| |+|+.++ |+||+|++++++|+||+++-
T Consensus 126 ~g~~~~ve~~~~~~~~f~~~L-DvGl~rtttG~RVfaalKGA~DgGL~IPh 175 (297)
T 3u5e_D 126 EGEYELTEAVEDGPRPFKVFL-DIGLQRTTTGARVFGALKGASDGGLYVPH 175 (297)
T ss_dssp CCCCCCCCCCSSSCCCCBCEE-ECTTCCCCTTCSHHHHHHHHHHHTCBCCC
T ss_pred ccceeccccccCCCCceeEEE-ecCCCccCccceehhhhhcccccCcccCC
Confidence 899 7999998 99999999999999998763
No 10
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.89 E-value=1.9e-23 Score=183.54 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=91.3
Q ss_pred CCCceEEEEecCCeEEEEEEEC--CCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------CCC--
Q 029747 86 MEPFTLDVFISKRFVSASLTHR--VTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA--------DVY-- 153 (188)
Q Consensus 86 ~~~pRL~V~kSNkhiyAqVidd--~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea--------GI~-- 153 (188)
..+|||+|++||+|||||||++ ++|+|||||||.|++..++..+++|++||+.||.+||+||+++ |++
T Consensus 46 spkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~ 125 (301)
T 4a17_M 46 TPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKV 125 (301)
T ss_dssp CCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSC
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcccc
Confidence 3579999999999999999998 5779999999999998777667899999999999999999999 998
Q ss_pred -----------------EEEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747 154 -----------------TASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 154 -----------------~vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~ 185 (188)
+++| |+|+.++ |+||+|++++++|+||+++-
T Consensus 126 ~g~~~~ve~~~~~~~~f~~~L-D~Gl~rtt~G~RVfaalKGA~DgGL~IPh 175 (301)
T 4a17_M 126 DGAYFNVDEDQKEKKPFKAIL-DAGLVRTTTGNRVFGVLKGACDGGINIPH 175 (301)
T ss_dssp CCSCCCGGGTCCSSCCCBCEE-ECTTSCCCSSCHHHHHHHHHHHTTCBCCC
T ss_pred ccceeecccccCCCCceEEEE-ecCCcccCcccchhhhhhcccccCcccCC
Confidence 6899 7999998 99999999999999998753
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.81 E-value=1.8e-20 Score=164.69 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=87.0
Q ss_pred CCceEEEEecCCeEEEEEEEC--CCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------CCCE--
Q 029747 87 EPFTLDVFISKRFVSASLTHR--VTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA--------DVYT-- 154 (188)
Q Consensus 87 ~~pRL~V~kSNkhiyAqVidd--~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea--------GI~~-- 154 (188)
-+|||+ ||+|||||||++ .+++|||||||.|++.+++..+++|++||+.||.+||+||+++ |+++
T Consensus 51 pKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~ 127 (304)
T 3iz5_Q 51 PKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEAT 127 (304)
T ss_dssp CCSSSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCC
T ss_pred CCceee---cCCcEEEEEEecCCCCCEEEEEEecCchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccc
Confidence 458999 999999999997 5779999999999998877668899999999999999999999 9997
Q ss_pred ----------------EEEecCCCCchh--hHHHHHHHHHHHCCcEeE
Q 029747 155 ----------------ASYTPRERDKFE--GKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 155 ----------------vvfdDRgg~kyh--GrVkA~adalRe~GL~f~ 184 (188)
++| |+|+.+++ +||+|++++++++||+++
T Consensus 128 g~~~~ve~~~~~~~f~~~L-DiGL~rtttG~RVfaalKGA~DgGL~IP 174 (304)
T 3iz5_Q 128 GEDYYVEPADERRPFRALL-DVGLIRTTTGNRVFGALKGALDGGLDIP 174 (304)
T ss_dssp SCCCSSCCSSCSCCCSCEE-ECTTCCCCSSCHHHHHHHHHHTTTCCCC
T ss_pred cceecccccCCCCCceEEE-ecCCcccccCceeEEeeccccccCcccC
Confidence 999 79999998 899999999999999875
No 12
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=97.35 E-value=0.0013 Score=51.35 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=74.2
Q ss_pred CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchh
Q 029747 87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFE 166 (188)
Q Consensus 87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyh 166 (188)
....+.|+-|.+++.++|.| .+|.++..+|+-...+|+.- .+.--||..+++.+|++|+|.||..|..--+|. =.
T Consensus 15 ~~gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~--G~ 89 (129)
T 2vqe_K 15 ASGRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT--GA 89 (129)
T ss_dssp SEEEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESC--CT
T ss_pred cceEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC--CC
Confidence 34789999999999999999 56778888888877777643 557889999999999999999999876522332 13
Q ss_pred hHHHHHHHHHHHCCcEeEeec
Q 029747 167 GKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 167 GrVkA~adalRe~GL~f~~~~ 187 (188)
|+ ++++.+|...||++..--
T Consensus 90 Gr-e~airaL~~~Gl~I~~I~ 109 (129)
T 2vqe_K 90 GR-EQAIRALQASGLQVKSIV 109 (129)
T ss_dssp TH-HHHHHHHHTSSSEEEECE
T ss_pred CH-HHHHHHHHHCCCEEEEEE
Confidence 45 477899999999876543
No 13
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=97.09 E-value=0.0012 Score=52.40 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=74.2
Q ss_pred CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchh
Q 029747 87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFE 166 (188)
Q Consensus 87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyh 166 (188)
....+.|+-|.+++.++|.| .+|.+++.+|+-...+|+. ..+.--||..+++.++++|+|.||..|..--+|. =.
T Consensus 28 ~~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~--rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~--G~ 102 (140)
T 3bbn_K 28 PKGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGT--KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGP--GL 102 (140)
T ss_dssp CCCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTT--SCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESC--ST
T ss_pred eeeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEccc--ccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC--CC
Confidence 45789999999999999999 5677888888887777764 3567889999999999999999999876421332 12
Q ss_pred hHHHHHHHHHHHCCcEeEeec
Q 029747 167 GKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 167 GrVkA~adalRe~GL~f~~~~ 187 (188)
|+ ++++.+|...||++..--
T Consensus 103 GR-eaairaL~~~Gl~I~~I~ 122 (140)
T 3bbn_K 103 GR-DAALRAIRRSGILLSFVR 122 (140)
T ss_dssp TS-SHHHHHHHTTTCEEEEEE
T ss_pred cH-HHHHHHHHHCCCEEEEEE
Confidence 33 367888888999886543
No 14
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=97.05 E-value=0.0029 Score=48.61 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=68.2
Q ss_pred eEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHH
Q 029747 90 TLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKI 169 (188)
Q Consensus 90 RL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrV 169 (188)
-+.|+-|.+++.++|.| .+|.+++.+|+-...+|+.. .+.--||...++.++++|+|.||+.+..--+|.- .||
T Consensus 8 i~hI~as~NNTivtiTD-~~G~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~G--~Gr- 81 (117)
T 3r8n_K 8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPG--PGR- 81 (117)
T ss_dssp EEEEEECSSCEEEEEEC-TTSCCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECSS--SST-
T ss_pred EEEEEcccCCEEEEEEc-CCCCEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCCC--ccH-
Confidence 46788999999999999 55668888888777777643 4567889999999999999999998765213321 122
Q ss_pred HHHHHHHHHCCcEeEee
Q 029747 170 RAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 170 kA~adalRe~GL~f~~~ 186 (188)
++++.+|...||++..-
T Consensus 82 ~~airaL~~~Gl~I~~I 98 (117)
T 3r8n_K 82 ESTIRALNAAGFRITNI 98 (117)
T ss_dssp THHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 35667777899987654
No 15
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.94 E-value=0.008 Score=47.45 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=69.7
Q ss_pred CceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCc-
Q 029747 88 PFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRE--RDK- 164 (188)
Q Consensus 88 ~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRg--g~k- 164 (188)
...+.|+-|-+.+.++|.|..+..+++.+|.-..-+++. ..+.--||...++.+|++|++.||+.|..--+| +.+
T Consensus 14 ~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~--~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~ 91 (137)
T 3j20_M 14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR--DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKS 91 (137)
T ss_dssp EEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT--TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSSC
T ss_pred ceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC--ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCCC
Confidence 346789999999999999965446888887776665542 345677889999999999999999987652233 222
Q ss_pred ---hhhHHHHHHHHHHHCCcEeEee
Q 029747 165 ---FEGKIRAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 165 ---yhGrVkA~adalRe~GL~f~~~ 186 (188)
=.|+ ++++.+|...||++..-
T Consensus 92 ~~pG~Gr-esairaL~~~Gl~I~~I 115 (137)
T 3j20_M 92 KTPGPGA-QAAIRALARAGLKIGRV 115 (137)
T ss_dssp CSCCTHH-HHHHHHHHHHTCEEEEE
T ss_pred cCCCCcH-HHHHHHHHhCCCEEEEE
Confidence 1344 55677888889988654
No 16
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=96.66 E-value=0.0071 Score=48.51 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=68.1
Q ss_pred CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC--CCCc
Q 029747 87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPR--ERDK 164 (188)
Q Consensus 87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDR--gg~k 164 (188)
....+.|+-|-+++.++|.|..+..++.. ||--...++. ...+.--||...++.+|++|++.||+.|..--+ ||.+
T Consensus 27 ~~gi~hI~asfNNTiVtiTD~~G~~~~~~-ssgg~~~k~~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~~ 104 (151)
T 2xzm_K 27 VFGVCHIMATWNDTFIHVTDLSGRETLVR-VTGGMKVKAD-REESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVE 104 (151)
T ss_dssp CEEEEEEEBCSSCBCCEEECTTCCSEEEE-CCHHHHCSSG-GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTTS
T ss_pred eeeEEEEEccCCCEEEEEECCCCCEEEEE-ecCcceEeCC-CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCCC
Confidence 44678999999999999999655545544 4433333322 224567788899999999999999998765213 2222
Q ss_pred ----hhhHHHHHHHHHHHCCcEeEeec
Q 029747 165 ----FEGKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 165 ----yhGrVkA~adalRe~GL~f~~~~ 187 (188)
-.| -++++.+|..+||++..--
T Consensus 105 ~kgpG~G-resairaL~~~GlkI~~I~ 130 (151)
T 2xzm_K 105 TKQPGPG-AQSALRALARSGMKIGRIE 130 (151)
T ss_dssp CCSCCSH-HHHHHHHHHHTSCEEEEEE
T ss_pred ccCCCcc-HHHHHHHHHHCCCEEEEEE
Confidence 134 4788889999999986543
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=95.70 E-value=0.021 Score=45.00 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=66.7
Q ss_pred CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEec--CCCCc
Q 029747 87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTP--RERDK 164 (188)
Q Consensus 87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdD--Rgg~k 164 (188)
....+.|+-|.+.+..+|.|. +|.++...|+-...+|+. ...+.--||...++.+|++|+|.||+.+..-- .|+.+
T Consensus 13 ~~gi~hI~asfNNTivtvTD~-~G~~~~~~ssG~~gfKg~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg~~ 90 (137)
T 3u5c_O 13 VFGVARIYASFNDTFVHVTDL-SGKETIARVTGGMKVKAD-RDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTR 90 (137)
T ss_dssp CEEECCEEEETTEEEECCEET-TSSSCCCCCBTTTTSCCS-TTTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCTTS
T ss_pred eeEEEEEEccCCCEEEEEEcC-CCCEEEEEeCCCcEEeCC-cccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCCCc
Confidence 334567899999999999995 555565666655566642 11356678888999999999999999876421 23332
Q ss_pred h----hhHHHHHHHHHHHCCcEeEe
Q 029747 165 F----EGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 165 y----hGrVkA~adalRe~GL~f~~ 185 (188)
. .| -++++.+|...||++..
T Consensus 91 ~kgpG~G-r~sairaL~~~Gl~I~~ 114 (137)
T 3u5c_O 91 TKTPGPG-GQAALRALARSGLRIGR 114 (137)
T ss_dssp CCSCCGG-GHHHHHHHHTTTCEECC
T ss_pred ccCCCcc-hHHHHHHHHhCCCEEEE
Confidence 2 23 45667888888998754
No 18
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=77.27 E-value=4.2 Score=38.92 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCEEEEecCC-----------------CCchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 143 LAERAREADVYTASYTPRE-----------------RDKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRg-----------------g~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
+|++|++.|++-+++||-- ..++-+-++++++.+.+.|++|.+|++
T Consensus 351 ~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~GmkfGLW~e 413 (729)
T 4fnq_A 351 IAKTEAELGIELFVLDDGWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQFGLWVE 413 (729)
T ss_dssp HHHHHHHHTCCEEEECSCCBTTCCSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHhcCccEEEEcceeecCCCCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEEEEEee
Confidence 6888999999999996421 123445699999999999999999874
No 19
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=69.65 E-value=7.2 Score=35.49 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCEEEEecCC----------CCch--------hhHHHHHHHHHHHCCcEeEeec
Q 029747 141 RILAERAREADVYTASYTPRE----------RDKF--------EGKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDRg----------g~ky--------hGrVkA~adalRe~GL~f~~~~ 187 (188)
+..|+.++++|.+-|+++-+- ...+ .--|+.+++++|+.||+|.+|+
T Consensus 108 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~GlY~ 172 (455)
T 2zxd_A 108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFGVYY 172 (455)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeEEEEe
Confidence 457899999999999986111 0011 2359999999999999999996
No 20
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=63.95 E-value=12 Score=33.84 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCEEEEecC---C-------CCch--------hhHHHHHHHHHHHCCcEeEeec
Q 029747 141 RILAERAREADVYTASYTPR---E-------RDKF--------EGKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDR---g-------g~ky--------hGrVkA~adalRe~GL~f~~~~ 187 (188)
...|+.++++|.+-|+++-+ | -..| .--|+.+++++|+.||+|.+|+
T Consensus 81 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk~GlY~ 145 (450)
T 2wvv_A 81 KKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVHFYF 145 (450)
T ss_dssp HHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCeEEEEe
Confidence 45788999999999998611 1 1111 2369999999999999999996
No 21
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=62.38 E-value=18 Score=28.76 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCEEEE-ec-CCCCchhhHHHHHHHHHHHCCcEeEe
Q 029747 139 IGRILAERAREADVYTASY-TP-RERDKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvf-dD-Rgg~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.|+.+++.+.+.|..++.| .. .+......|...|.+++++.|+.+.+
T Consensus 118 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 166 (295)
T 3hcw_A 118 ASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQI 166 (295)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeE
Confidence 3445555555679998876 11 12222456999999999999998763
No 22
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=59.67 E-value=11 Score=35.13 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCEEEEecC----------CCCchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 141 RILAERAREADVYTASYTPR----------ERDKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDR----------gg~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
.-+|+.+++.|++-+++||- ...++-+ ++++++.+.+.|++|-++++
T Consensus 215 ~~~ad~~~~~G~~~~~IDdgW~~~~Gdw~~d~~kFP~-lk~lvd~lh~~Glk~Giw~~ 271 (564)
T 1zy9_A 215 LKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDFPS-VEEMAKVIAENGFIPGIWTA 271 (564)
T ss_dssp HHHHHHGGGTTCSEEEECTTSEEETTEEEEECTTCCC-HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHhcCCcEEEECcccccccCCcccCcccCCC-HHHHHHHHHHCCCEEEEEeC
Confidence 34567777999999999531 1235667 99999999999999999874
No 23
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=59.06 E-value=20 Score=32.92 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCEEEEecC----------CCCc-------h----hhHHHHHHHHHHHCCcEeEeec
Q 029747 141 RILAERAREADVYTASYTPR----------ERDK-------F----EGKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDR----------gg~k-------y----hGrVkA~adalRe~GL~f~~~~ 187 (188)
...|+.++++|.+-|+++-+ .... + .--|+.+++++|+.||+|.+|+
T Consensus 65 ~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~ 132 (478)
T 3ues_A 65 DQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYL 132 (478)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 45688899999999998611 1111 1 2369999999999999999996
No 24
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=57.10 E-value=22 Score=28.11 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCc---hhhHHHHHHHHHHHCCcEeEe
Q 029747 138 AIGRILAERAREADVYTASYTPRERDK---FEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg~k---yhGrVkA~adalRe~GL~f~~ 185 (188)
..|+.+++.+.+.|..++.| -.+... ...|...|.+++.+.|+.+..
T Consensus 113 ~~g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~ 162 (288)
T 3gv0_A 113 AYAYEAVERLAQCGRKRIAV-IVPPSRFSFHDHARKGFNRGIRDFGLTEFP 162 (288)
T ss_dssp HHHHHHHHHHHHTTCCEEEE-ECCCTTSHHHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHCCCCeEEE-EcCCcccchHHHHHHHHHHHHHHcCCCcch
Confidence 34566666777789999887 233322 345999999999999998754
No 25
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=56.78 E-value=17 Score=28.84 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=26.4
Q ss_pred HHHHHhcCCCEEEEecCCCCc-hhhHHHHHHHHHHHCCcEeEe
Q 029747 144 AERAREADVYTASYTPRERDK-FEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~k-yhGrVkA~adalRe~GL~f~~ 185 (188)
++...++||.+|+|- ...+. ....+ +-.+-|+++||++..
T Consensus 111 a~aIi~agI~rVVy~-~~~~~d~~~~~-~~~~~L~~aGI~V~~ 151 (178)
T 2w4l_A 111 AKLIIQAGIKEVIFM-SDKYHDSDEAT-AARLLFNMAGVTFRK 151 (178)
T ss_dssp HHHHHHTTCCEEEEE-ECTTTTSHHHH-HHHHHHHHHTCEEEE
T ss_pred HHHHHHHCCCEEEEE-eccCCCCcchH-HHHHHHHHCCCEEEE
Confidence 566678999999992 22111 11223 347889999999876
No 26
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=55.55 E-value=20 Score=32.68 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCEEEEe----------cCCCCc-------h-h---hHHHHHHHHHHHCCcEeEeec
Q 029747 141 RILAERAREADVYTASYT----------PRERDK-------F-E---GKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfd----------DRgg~k-------y-h---GrVkA~adalRe~GL~f~~~~ 187 (188)
...|+.++++|.+-|+++ |..... + . --|+.+++++|+.||+|.+|+
T Consensus 57 ~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~~p~~~~k~Div~e~~~A~r~~Gl~~g~Y~ 124 (469)
T 3eyp_A 57 RQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGIYL 124 (469)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCcccccCcccCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 456888999999999986 111111 1 1 359999999999999999996
No 27
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=55.20 E-value=20 Score=32.59 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCEEEEecC----------CC--C-----ch----hhHHHHHHHHHHHCCcEeEeec
Q 029747 141 RILAERAREADVYTASYTPR----------ER--D-----KF----EGKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDR----------gg--~-----ky----hGrVkA~adalRe~GL~f~~~~ 187 (188)
...|+.++++|.+-|+++-+ .. + .+ ..-|+.+++++|+.||+|.+|+
T Consensus 62 ~~w~~~~k~aGaky~v~t~kHHdGf~lw~s~~t~~~~~~sp~~~~~~D~v~e~~~A~r~~gl~~g~Y~ 129 (443)
T 3gza_A 62 DQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQPGIYI 129 (443)
T ss_dssp HHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeeEeCCCcccCCCCCCCcccccCCccCCCcCHHHHHHHHHHHcCCeEEEEE
Confidence 45688899999999998611 11 1 11 2359999999999999999996
No 28
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=54.50 E-value=28 Score=31.35 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCC--------------CchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 131 SDIPACLAIGRILAER-AREADVYTASYTPRER--------------DKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 131 ~n~~AA~~vG~lLA~R-akeaGI~~vvfdDRgg--------------~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
-|.+........|++. ++++|++-++.||--- .++-+-++++++.+.+.|++|.+|.|
T Consensus 33 i~e~~i~~~ad~~~~~Gl~~~G~~~~~iDDgW~~~~rd~~G~~~~~~~kFP~Gl~~l~~~ih~~Glk~Giw~~ 105 (404)
T 3hg3_A 33 ISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYAD 105 (404)
T ss_dssp SSHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCHHHHHHHHHHHHHCCcHhhCCeEEEECCCcCCCCCCCCCCeeeChhhcCCCHHHHHHHHHHCCCeeEEEec
Confidence 3566666777777653 6789999999953210 23444599999999999999999974
No 29
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=53.78 E-value=25 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCC-------Cchh-hHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRER-------DKFE-GKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg-------~kyh-GrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+. .... .|...|.+++.+.|+.+.
T Consensus 102 ~~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 153 (276)
T 2h0a_A 102 GRLAGAYLARFPGPIFAI-AVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFS 153 (276)
T ss_dssp HHHHHHHHTTSSSCEEEE-EECCSCCC---CCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCeEEE-EecCcccccccchhHHHHHHHHHHHHHHcCCCCC
Confidence 444555555679888876 1222 2345 789999999999998753
No 30
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=53.77 E-value=23 Score=27.89 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 112 ~g~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 159 (290)
T 3clk_A 112 IGYQATNLLINEGHRQIGI-AGIDQYPYTGRKRLAGYKKALKEANIAIN 159 (290)
T ss_dssp HHHHHHHHHHTTTCCSEEE-ESCCCCTTTHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCCEEEE-EeCCCCCcchHHHHHHHHHHHHHcCCCCC
Confidence 3555566666679888776 2222 2346799999999999998763
No 31
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=53.25 E-value=23 Score=27.73 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+++.
T Consensus 105 ~~~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 152 (277)
T 3cs3_A 105 GATQAIEQFVNVGSKKVLL-LSGPEKGYDSQERLAVSTRELTRFGIPYE 152 (277)
T ss_dssp HHHHHHHHHHHTTCSCEEE-EECCTTSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHcCCceEEE-EeCCccCccHHHHHHHHHHHHHHcCCCee
Confidence 3555566666678888776 1222 2235699999999999999765
No 32
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.74 E-value=22 Score=27.84 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+++.
T Consensus 114 ~~~~~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~g~~~~l~~~g~~~~ 160 (289)
T 1dbq_A 114 GYMAGRYLIERGHREIGV-IPGPLERNTGAGRLAGFMKAMEEAMIKVP 160 (289)
T ss_dssp HHHHHHHHHHTTCCSEEE-ECCC------CHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCeEEE-EecCCccccHHHHHHHHHHHHHHCCCCCC
Confidence 455555556668888776 2222 2346799999999999998764
No 33
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=50.91 E-value=27 Score=26.96 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCEEEEe--cCCCCchhhHHHHHHHHHHHCCcEeEe
Q 029747 139 IGRILAERAREADVYTASYT--PRERDKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfd--DRgg~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.|+.+++.+.+.|..++.|- +.+......|...|.+++.+.|+++..
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 155 (272)
T 3o74_A 107 ASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR 155 (272)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe
Confidence 45666777777899988761 112223456999999999999987653
No 34
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=50.78 E-value=21 Score=27.87 Aligned_cols=46 Identities=7% Similarity=-0.019 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCc-hhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRERDK-FEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg~k-yhGrVkA~adalRe~GL~f~ 184 (188)
..|+.+++.+.+.|..++.| -.+... ...|...|.+++.+.|+.+.
T Consensus 104 ~~g~~a~~~L~~~G~~~i~~-i~~~~~~~~~R~~gf~~~l~~~~~~~~ 150 (280)
T 3gyb_A 104 RGAEIATKHLIDLGHTHIAH-LRVGSGAGLRRFESFEATMRAHGLEPL 150 (280)
T ss_dssp HHHHHHHHHHHHTTCCSEEE-ECCSSHHHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHCCCCeEEE-EeCCCchHHHHHHHHHHHHHHcCcCCC
Confidence 34555566666679888877 233222 56699999999999999876
No 35
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=50.19 E-value=19 Score=28.10 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 137 LAIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 137 ~~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
+..|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 107 ~~~g~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 156 (277)
T 3e61_A 107 FKGGQLQAEVVRKGKGKNVLI-VHENLLIDAFHQRVQGIKYILDQQRIDYK 156 (277)
T ss_dssp HHHHHHHHHHHHHTTCCSEEE-EESCTTSHHHHHHHHHHHHHHHC---CEE
T ss_pred HHHHHHHHHHHHHCCCCeEEE-EeCCCCCccHHHHHHHHHHHHHHcCCCcc
Confidence 345666777777789988877 2222 2235699999999999999876
No 36
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=49.71 E-value=21 Score=27.99 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+.+.
T Consensus 118 ~g~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 165 (292)
T 3k4h_A 118 AAREVAEYLISLGHKQIAF-IGGGSDLLVTRDRLAGMSDALKLADIVLP 165 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEE-EESCTTBHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCceEEE-EeCcccchhHHHHHHHHHHHHHHcCCCCC
Confidence 4555566666679888877 22322 235699999999999999754
No 37
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=49.61 E-value=44 Score=25.64 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC----CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER----DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg----~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 102 ~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~~R~~gf~~al~~~g~~~~ 150 (255)
T 1byk_A 102 AIKILMQRLYDQGHRNISY-LGVPHSDVTTGKRRHEAYLAFCKAHKLHPV 150 (255)
T ss_dssp HHHHHHHHHHHTTCCCEEE-ECCCTTSTTTTHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHcCCCeEEE-EecCCCCcccHHHHHHHHHHHHHHcCCCcc
Confidence 3455556666679888876 2332 2345799999999999998754
No 38
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=49.48 E-value=20 Score=28.14 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|..+|.+++.+.|+.+.
T Consensus 114 ~~~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 161 (289)
T 3g85_A 114 MGEKASLLFAKKRYKSAAA-ILTESLNDAMDNRNKGFIETCHKNGIKIS 161 (289)
T ss_dssp HHHHHHHHHHHTTCCBCEE-EECCCSSHHHHHHHHHHHHHHHHTTCBCC
T ss_pred HHHHHHHHHHHcCCCEEEE-EeCCcccccHHHHHHHHHHHHHHcCCCCC
Confidence 3555666666779888776 1222 2235599999999999999764
No 39
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=48.97 E-value=27 Score=27.68 Aligned_cols=45 Identities=4% Similarity=-0.045 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC--CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER--DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg--~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 113 ~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~R~~Gf~~al~~~g~~~~ 159 (289)
T 3k9c_A 113 GITLAVDHLTELGHRNIAH-IDGADAPGGADRRAGFLAAMDRHGLSAS 159 (289)
T ss_dssp HHHHHHHHHHHTTCCSEEE-ECCTTSTTHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHCCCCcEEE-EeCCCCccHHHHHHHHHHHHHHCCCCCC
Confidence 3455555556679888876 2222 3346799999999999999753
No 40
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=48.82 E-value=22 Score=28.39 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++++.|+.+.
T Consensus 118 ~g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 165 (303)
T 3kke_A 118 GGGIATEHLITLGHSRIAF-ISGTAIHDTAQRRKEGYLETLASAGLRSE 165 (303)
T ss_dssp HHHHHHHHHHHTTCCSEEE-EESCSSCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCCeEEE-EeCCCcCccHHHHHHHHHHHHHHcCCCCC
Confidence 3555566666689988876 2232 2245699999999999999764
No 41
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=48.24 E-value=24 Score=27.50 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCEEEE-ecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASY-TPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvf-dDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
..|+.+++.+.+.|..++.+ ..........|...|.+++.+.|+.+.
T Consensus 123 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~ 170 (298)
T 3tb6_A 123 KGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPS 170 (298)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCC
Confidence 34556666666779887765 112223345699999999999998764
No 42
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=48.20 E-value=23 Score=27.79 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 109 ~g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 156 (288)
T 2qu7_A 109 AAYIATKRVLESTCKEVGL-LLANPNISTTIGRKNGYNKAISEFDLNVN 156 (288)
T ss_dssp HHHHHHHHHHTSSCCCEEE-EECCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCCcEEE-EecCCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3555556666679888776 1222 2235699999999999998764
No 43
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=48.11 E-value=32 Score=27.22 Aligned_cols=46 Identities=24% Similarity=0.204 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcC--CCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeEe
Q 029747 139 IGRILAERAREAD--VYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 139 vG~lLA~RakeaG--I~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.|+.+++.+.+.| -.++.+ -.+. .....|...|.+++.+.|+++..
T Consensus 115 ~g~~a~~~l~~~g~~~~~i~~-i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~ 165 (297)
T 3rot_A 115 AGKKLGEKALELTPSAKRALV-LNPQPGHIGLEKRAYGIKTILQDKGIFFEE 165 (297)
T ss_dssp HHHHHHHHHHHHCTTCCEEEE-EESCTTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhcCCCceEEE-EeCCCCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3555555555667 777776 2232 22346999999999999998753
No 44
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=47.85 E-value=24 Score=27.35 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+.+.
T Consensus 107 ~~~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 154 (275)
T 3d8u_A 107 VGKACTRHLIEQGFKNVGF-IGARGNHSTLQRQLHGWQSAMIENYLTPD 154 (275)
T ss_dssp HHHHHHHHHHTTTCCCEEE-EECSCSSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCCeEEE-EcCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence 3455555566678888776 12321 235699999999999998653
No 45
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=47.79 E-value=24 Score=28.07 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
..|+.+++.+.+.|..++.| -.+. .....|...|.+++++.|+.+.
T Consensus 112 ~~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 160 (294)
T 3qk7_A 112 AGASLAVKRLLELGHQRIAF-VSTDARISYVDQRLQGYVQTMSEAGLMPL 160 (294)
T ss_dssp HHHHHHHHHHHHTTCCCEEE-EEESSCCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHCCCceEEE-EeCCcccchHHHHHHHHHHHHHHCCCCCC
Confidence 34555566666679888776 1222 2245699999999999998753
No 46
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=47.70 E-value=23 Score=28.24 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
..|+.+++.+.+.|-.++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 130 ~~g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~ 178 (305)
T 3huu_A 130 DAAYQLTQYLYHLGHRHILF-LQESGHYAVTEDRSVGFKQYCDDVKISND 178 (305)
T ss_dssp HHHHHHHHHHHHTTCCSEEE-EEESSCBHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCeEEE-EcCCcccchhHHHHHHHHHHHHHcCCCcc
Confidence 34556666667779888776 1222 2235699999999999999765
No 47
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=47.70 E-value=40 Score=26.46 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHHHh--------cCCCEEEE-ecC-CCCchhhHHHHHHHHHHHCCcEeE
Q 029747 130 RSDIPACLAIGRILAERARE--------ADVYTASY-TPR-ERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 130 ~~n~~AA~~vG~lLA~Rake--------aGI~~vvf-dDR-gg~kyhGrVkA~adalRe~GL~f~ 184 (188)
..|..+++.+++.|++.+++ .|..++.| ... +......|...|.+++.+.|+.+.
T Consensus 110 ~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 174 (309)
T 2fvy_A 110 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 174 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceE
Confidence 34667788888888877654 57666654 211 112235699999999999999765
No 48
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=47.66 E-value=24 Score=27.79 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 112 ~g~~a~~~L~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 159 (291)
T 3egc_A 112 GARTAVEYLIARGHTRIGA-IVGSAGLMTSRERLKGFRAAMSAAGLPVR 159 (291)
T ss_dssp HHHHHHHHHHHTTCCSEEE-ECSCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCCEEEE-EeCCCCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 3555566666679988876 2332 2345699999999999998764
No 49
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=47.23 E-value=23 Score=27.67 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+++.
T Consensus 127 ~~~a~~~l~~~G~~~I~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 173 (296)
T 3brq_A 127 SFNAVAELINAGHQEIAF-LTGSMDSPTSIERLAGYKDALAQHGIALN 173 (296)
T ss_dssp HHHHHHHHHHTTCCSEEE-ECCCTTCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHCCCceEEE-EcCCCCCccHHHHHHHHHHHHHHcCCCCC
Confidence 445555555679888776 22321 235689999999999998764
No 50
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=46.68 E-value=38 Score=30.12 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCC---------------------------Cchhh-----HHHHHHHHHH
Q 029747 130 RSDIPACLAIGRILAERAREADVYTASYTPRER---------------------------DKFEG-----KIRAVVQSLI 177 (188)
Q Consensus 130 ~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg---------------------------~kyhG-----rVkA~adalR 177 (188)
.-|-+........+++..++.|++-+++||--- .++-+ -++++++.+.
T Consensus 25 ~i~e~~i~~~ad~~~~gl~~~G~~~~~iDDgW~~~~~~~~~y~~~~~~~~d~~G~~~~~~~kFP~~~~~~Gl~~l~~~ih 104 (433)
T 3cc1_A 25 SVTEEEVLGNAEYMANHLKKYGWEYIVVDIQWYEPTANSSAYNPFAPLCMDEYGRLLPATNRFPSAKNGAGFKPLSDAIH 104 (433)
T ss_dssp CCCHHHHHHHHHHHHHHTGGGTCCEEEECSCTTCCCTTSTTCCTTSCSCBCTTSCBCCCTTTCGGGTTTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcchhhCCeEEEECCCcCCCCCcccccccccccccCCCCCEeECCccCCCcccCCCHHHHHHHHH
Confidence 345666667777778888999999999964210 12333 4999999999
Q ss_pred HCCcEeEeec
Q 029747 178 DNGIDVKIYL 187 (188)
Q Consensus 178 e~GL~f~~~~ 187 (188)
+.|++|-+|+
T Consensus 105 ~~Glk~Giw~ 114 (433)
T 3cc1_A 105 DLGLKFGIHI 114 (433)
T ss_dssp HTTCEEEEEE
T ss_pred HcCCeeEEEe
Confidence 9999999986
No 51
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=46.42 E-value=32 Score=29.39 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHH-HHhcCCCEEEEecCC-------C------CchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 133 IPACLAIGRILAER-AREADVYTASYTPRE-------R------DKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 133 ~~AA~~vG~lLA~R-akeaGI~~vvfdDRg-------g------~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
.+........|++. .+++|++-|++||-- | .++-.-++++++-+.+.||+|.+|.+
T Consensus 35 e~~i~~~ad~~~~~gl~~~Gy~yv~iDdgW~~~rd~~G~~~~d~~rFP~G~k~ladyih~~Glk~Giy~~ 104 (400)
T 4do4_A 35 EQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYAD 104 (400)
T ss_dssp HHHHHHHHHHHHHSSHHHHTCCEEECCSSCEEEECTTCCEEECTTTSTTCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCcchhhCCeEEEECCCcccCCCCCCCEeECcccCCcccHHHHHHHHHCCceEEEecC
Confidence 34455556666665 677899999995311 1 22333399999999999999999964
No 52
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=46.11 E-value=30 Score=26.04 Aligned_cols=40 Identities=3% Similarity=-0.090 Sum_probs=33.1
Q ss_pred hhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEE
Q 029747 76 ISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAV 115 (188)
Q Consensus 76 ~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaS 115 (188)
..+++.+.......+..|.....-++++|+|..+|.+|=.
T Consensus 45 ~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRq 84 (117)
T 2hc5_A 45 GEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIRE 84 (117)
T ss_dssp HHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEe
Confidence 4556666666778899999999999999999999998733
No 53
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=44.99 E-value=32 Score=30.62 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHH-HHHHhcCCCEEEEecCC--------------CCchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 131 SDIPACLAIGRILA-ERAREADVYTASYTPRE--------------RDKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 131 ~n~~AA~~vG~lLA-~RakeaGI~~vvfdDRg--------------g~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
-|.+........++ .-.++.|++-+++||-- ..++-+-++++++-+.+.|++|-+|.+
T Consensus 26 ~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Giw~~ 98 (417)
T 1szn_A 26 IDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYST 98 (417)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEEEEEeC
Confidence 34444444444332 23478999999995321 123444699999999999999999863
No 54
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=44.87 E-value=12 Score=30.14 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeEee
Q 029747 139 IGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~~~ 186 (188)
+|++.++.|+++|++-|.+.+.....+.+-+..+++.+++.|+..-+-
T Consensus 70 tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~ 117 (219)
T 2h6r_A 70 TGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVC 117 (219)
T ss_dssp TTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEE
Confidence 566777999999999999944333456677999999999999977553
No 55
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=44.71 E-value=24 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCE
Q 029747 133 IPACLAIGRILAERAREADVYT 154 (188)
Q Consensus 133 ~~AA~~vG~lLA~RakeaGI~~ 154 (188)
-.++|.||..|++..++.|+..
T Consensus 30 ~K~SYaIG~~mG~~L~~~g~~~ 51 (88)
T 3b09_A 30 QHASYGVGRQMGEQLAANSFEG 51 (88)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHHHHhCCccc
Confidence 3479999999999999988865
No 56
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=44.31 E-value=30 Score=30.86 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC--c---hhhHHHHHHHHHHHCCcEeEe
Q 029747 139 IGRILAERAREADVYTASYTPRERD--K---FEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg~--k---yhGrVkA~adalRe~GL~f~~ 185 (188)
=|+++++-+++.|.+++.| -.+.. . ..-|...+.++|.|.||.|..
T Consensus 143 Ggy~A~~~Li~~Ghk~Ia~-Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~ 193 (371)
T 3qi7_A 143 RGKVLAERSKEMGAKAFIH-YASTDDLKDVNIAKRLEMIKETCKNIGLPFVQ 193 (371)
T ss_dssp HHHHHHHHHHHTTCSCEEE-EEETTGGGSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHCCCCEEEE-EeccccccchhHHHHHHHHHHHHHHcCCCcee
Confidence 3567788888999999887 23332 1 233899999999999998864
No 57
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.25 E-value=29 Score=27.42 Aligned_cols=46 Identities=9% Similarity=-0.040 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhc--CCCEEEEecCCC--CchhhHHHHHHHHHHHCCcEeEe
Q 029747 139 IGRILAERAREA--DVYTASYTPRER--DKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 139 vG~lLA~Rakea--GI~~vvfdDRgg--~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.|+.+++.+.+. |-.++.| -.+. .....|..+|.+++.+.|+.++.
T Consensus 112 ~g~~~~~~l~~~~~g~~~i~~-i~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 161 (305)
T 3g1w_A 112 AGMNAAYKMAELLDGEGEVAV-ITLPNQLNHQERTTGFKETLEAEFPAIEV 161 (305)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE-EECTTCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EeCCCcccHHHHHHHHHHHHHhhCCCCEE
Confidence 445555555555 8888776 2222 22345999999999999987764
No 58
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=44.17 E-value=21 Score=28.28 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcEe
Q 029747 138 AIGRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~f 183 (188)
..|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+.+
T Consensus 117 ~~g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (301)
T 3miz_A 117 QGARDLTRYLLERGHRRIGY-IRLNPILLGAELRLDAFRRTTSEFGLTE 164 (301)
T ss_dssp HHHHHHHHHHHTTTCCSEEE-EECCTTSHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHcCCCeEEE-EecCccchhHHHHHHHHHHHHHHcCCCC
Confidence 34555666666789988876 22322 23569999999999999875
No 59
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=43.98 E-value=26 Score=27.58 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+++.
T Consensus 112 g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 158 (285)
T 3c3k_A 112 SEYVVDQLVKSGKKRIAL-INHDLAYQYAQHRESGYLNRLKFHGLDYS 158 (285)
T ss_dssp HHHHHHHHHHTTCCCEEE-EECCTTSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCeEEE-EeCCCccccHHHHHHHHHHHHHHcCCCce
Confidence 445555555668888776 1222 2235689999999999998764
No 60
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=43.22 E-value=30 Score=28.04 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
..|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 167 ~~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 215 (338)
T 3dbi_A 167 QTSFNAVAELINAGHQEIAF-LTGSMDSPTSIERLAGYKDALAQHGIALN 215 (338)
T ss_dssp HHHHHHHHHHHHTTCCSEEE-ECCCTTCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEE-EeCCCCCccHHHHHHHHHHHHHHCCCCCC
Confidence 34556666667789998887 2332 2235699999999999999764
No 61
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=42.61 E-value=34 Score=27.69 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 160 ~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 206 (330)
T 3ctp_A 160 GRMAFDHLYEKGCRKILH-IKGPEVFEATELRYKGFLDGARAKDLEID 206 (330)
T ss_dssp HHHHHHHHHHTTCCSEEE-EECCTTCHHHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHCCCCeEEE-EeCCccCccHHHHHHHHHHHHHHcCCCcc
Confidence 444555555679888776 1222 1235699999999999999764
No 62
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=42.56 E-value=29 Score=29.88 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCCC---------------chhhHHHHHHHHHHHCCcEeEeecC
Q 029747 131 SDIPACLAIGRILAER-AREADVYTASYTPRERD---------------KFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 131 ~n~~AA~~vG~lLA~R-akeaGI~~vvfdDRgg~---------------kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
-|.+........+++. ..+.|++-+++|| |=+ ++-.-++++++-+.+.|++|-+|.+
T Consensus 23 ~~e~~i~~~ad~~~~~gl~~~G~~~v~iDd-gW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~ih~~Glk~Giw~~ 95 (362)
T 1uas_A 23 INEQIIRETADALVNTGLAKLGYQYVNIDD-CWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSD 95 (362)
T ss_dssp CCHHHHHHHHHHHHHTSHHHHTCCEEECCS-SCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCchhcCCcEEEECC-CcCCCCCCCCCCeeEChhccCccHHHHHHHHHHCCCEeEEEee
Confidence 3444444444444332 2678999999953 211 2333599999999999999999863
No 63
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=41.61 E-value=32 Score=27.13 Aligned_cols=48 Identities=2% Similarity=-0.044 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 132 DIPACLAIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 132 n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
|..+++..++.|+ +.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 109 ~~~~g~~a~~~L~----~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~ 159 (287)
T 3bbl_A 109 GTAGTRQAVEYLI----GRGHRRIAI-LAWPEDSRVGNDRLQGYLEAMQTAQLPIE 159 (287)
T ss_dssp HHHHHHHHHHHHH----HHTCCCEEE-EECCTTCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHH----HCCCCeEEE-EeCCcccccHHHHHHHHHHHHHHcCCCCC
Confidence 4455555555554 458888776 1222 1235699999999999998753
No 64
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=41.22 E-value=31 Score=30.27 Aligned_cols=41 Identities=5% Similarity=0.048 Sum_probs=29.1
Q ss_pred HHHHHhcCCCEEEEecCCCC----chh--------------hHHHHHHHHHHHCCcEeEe
Q 029747 144 AERAREADVYTASYTPRERD----KFE--------------GKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~----kyh--------------GrVkA~adalRe~GL~f~~ 185 (188)
-+.++++||+.|+++ +.++ .|. --|..+++++++.||+|-+
T Consensus 60 ~~~mK~~GikyvIl~-~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv~~ 118 (340)
T 4h41_A 60 FQHMKRIGIDTVIMI-RSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKFYF 118 (340)
T ss_dssp HHHHHHTTCCEEEES-CSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEE-EEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeEEE
Confidence 345689999999985 3221 111 1399999999999999643
No 65
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=40.61 E-value=30 Score=27.35 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEe
Q 029747 140 GRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f 183 (188)
|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+++
T Consensus 116 g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 161 (290)
T 2rgy_A 116 GELAAATLIEHGHRKLAV-ISGPFTASDNVERLDGFFDELARHGIAR 161 (290)
T ss_dssp HHHHHHHHHHTTCCSEEE-EESCTTCHHHHHHHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHHCCCceEEE-EeCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 444455555568888776 2222 223568999999999999875
No 66
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=40.57 E-value=34 Score=27.71 Aligned_cols=45 Identities=7% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+.+.
T Consensus 167 ~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 214 (332)
T 2o20_A 167 AAYQSTKKLIDSGNKKIAY-IMGSLKDVENTERMVGYQEALLEANIEFD 214 (332)
T ss_dssp HHHHHHHHHHHTTCSSEEE-ECSCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCCeEEE-EeCCcccccHHHHHHHHHHHHHHcCCCCC
Confidence 3445555556679888877 23322 235689999999999998764
No 67
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=39.69 E-value=52 Score=26.96 Aligned_cols=47 Identities=2% Similarity=0.003 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCEEEE-ec-CCCCc-hhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASY-TP-RERDK-FEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvf-dD-Rgg~k-yhGrVkA~adalRe~GL~f~ 184 (188)
..|+.+++.+.+.|..++.| .. ..... ...|...|.+++.+.|+.+.
T Consensus 173 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 222 (355)
T 3e3m_A 173 RAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPD 222 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCC
Confidence 34555666666789988776 11 11122 45799999999999999754
No 68
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=39.55 E-value=29 Score=30.47 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCCEEE---E----ecCCCCc----hh-------hHHHHHHHHHHHCCcE
Q 029747 127 LRSRSDIPACLAIGRILAERAREADVYTAS---Y----TPRERDK----FE-------GKIRAVVQSLIDNGID 182 (188)
Q Consensus 127 L~s~~n~~AA~~vG~lLA~RakeaGI~~vv---f----dDRgg~k----yh-------GrVkA~adalRe~GL~ 182 (188)
+..+.|.+.++.+|+++|+-+.+.||+-.. . +++++.. |+ --..|++++++++|+-
T Consensus 101 laat~d~~l~~~~g~~~a~E~ra~Gi~~~~aPv~Dv~r~p~~~rig~RsfgeDP~lv~~~a~a~v~Glq~~gV~ 174 (351)
T 3tev_A 101 LGAADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNPANPVIGDRAYGSDAARVTRHGRAALAGHTREGVA 174 (351)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCCSSGGGSSCSSHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCCEeccceeEeccCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 345678999999999999999999998521 1 2233221 11 1367889999999974
No 69
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=38.96 E-value=35 Score=27.78 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+.+.
T Consensus 165 ~~~a~~~L~~~G~~~I~~-i~g~~~~~~~~~R~~Gf~~al~~~g~~~~ 211 (340)
T 1qpz_A 165 GYMAGRYLIERGHREIGV-IPGPLERNTGAGRLAGFMKAMEEAMIKVP 211 (340)
T ss_dssp HHHHHHHHHHHTCCCEEE-ECCCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCEEEE-EeCCCccccHHHHHHHHHHHHHHCCCCCC
Confidence 344444555568888877 23322 235699999999999998764
No 70
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=38.87 E-value=72 Score=27.24 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 146 RAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 146 RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
-+++.|+..+.|-+.+|-++-.-++|+++++-++|+-|+
T Consensus 153 ml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lE 191 (249)
T 3m0z_A 153 LLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLE 191 (249)
T ss_dssp HHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceEC
Confidence 467899999998788999999999999999999999554
No 71
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=38.75 E-value=43 Score=26.42 Aligned_cols=44 Identities=5% Similarity=-0.047 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCC----chhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRERD----KFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg~----kyhGrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+++.
T Consensus 121 g~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 168 (289)
T 2fep_A 121 IYDAVKLLVDKGHTDIAF-VSGPMAEPINRSKKLQGYKRALEEANLPFN 168 (289)
T ss_dssp HHHHHHHHHHTTCSSEEE-EESCTTSHHHHTTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCeEEE-EeCCccccccHHHHHHHHHHHHHHcCCCCC
Confidence 444555555568888776 22322 235699999999999998764
No 72
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=38.49 E-value=45 Score=24.69 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 144 AERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
.+.|.++|+..++|. -|. . -..+++.++++||.+
T Consensus 75 v~e~~~~g~k~v~~~-~G~-~----~~e~~~~a~~~Girv 108 (122)
T 3ff4_A 75 YNYILSLKPKRVIFN-PGT-E----NEELEEILSENGIEP 108 (122)
T ss_dssp HHHHHHHCCSEEEEC-TTC-C----CHHHHHHHHHTTCEE
T ss_pred HHHHHhcCCCEEEEC-CCC-C----hHHHHHHHHHcCCeE
Confidence 456778899988884 443 2 258899999999986
No 73
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=37.98 E-value=34 Score=32.69 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCEEEEecCC-----------C-C-----chhhHHHHHHHHHHHCCcEeEeecC
Q 029747 143 LAERAREADVYTASYTPRE-----------R-D-----KFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRg-----------g-~-----kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
+|+.+++.|++-+++||-- + + ++-+-++++++.+.+.|++|-++++
T Consensus 351 ~ad~~~~~G~~~~viDDgW~~~r~~~~~~~Gdw~~d~~kFP~Glk~lvd~ih~~Glk~GlW~~ 413 (720)
T 2yfo_A 351 LAKEAASLGIDMVVMDDGWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKFGIWIE 413 (720)
T ss_dssp HHHHHHHHTCCEEEECSSSBTTCSSTTSCTTCCSBCHHHHTSCHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHcCCcEEEECcccccCCCcccccCCCCeeChhhcCccHHHHHHHHHHCCCEEEEEec
Confidence 6788999999999996322 0 0 1222299999999999999999863
No 74
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=36.91 E-value=47 Score=25.47 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHC-CcEeE
Q 029747 132 DIPACLAIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDN-GIDVK 184 (188)
Q Consensus 132 n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~-GL~f~ 184 (188)
|..+++.+++.|++++.+.|..++.| -.+. .....|..+|.+++.+. |+++.
T Consensus 107 ~~~~g~~~~~~l~~~~~~~G~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 162 (276)
T 3ksm_A 107 NYAAGQLAARALLATLDLSKERNIAL-LRLRAGNASTDQREQGFLDVLRKHDKIRII 162 (276)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEE-CBCCTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred HHHHHHHHHHHHHHhcCcCCCceEEE-EEcCCCchhHHHHHHHHHHHHHhCCCcEEE
Confidence 44455555555554433238889887 2332 22356999999999998 99875
No 75
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=36.82 E-value=55 Score=28.73 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHH-HHHhcCCCEEEEecCCCC---------------chhhHHHHHHHHHHHCCcEeEeecC
Q 029747 131 SDIPACLAIGRILAE-RAREADVYTASYTPRERD---------------KFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 131 ~n~~AA~~vG~lLA~-RakeaGI~~vvfdDRgg~---------------kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
-|.+........+++ -.++.|++-+++|| |=+ ++-.-++++++-+.+.|++|-+|++
T Consensus 23 ~~e~~i~~~ad~~~~~gl~~~G~~~~~iDd-gW~~~~r~~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Giw~~ 95 (397)
T 3a5v_A 23 VDEQLILDAAKAIASSGLKDLGYNYVIIDD-CWQKNERESSKTLLADPTKFPRGIKPLVDDIHNLGLKAGIYSS 95 (397)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHTCCEEECCS-SCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEECC-CcCCCCCCCCCCeEEChhcCCcCHHHHHHHHHHcCCEEEEEec
Confidence 455556666666665 34458999999953 211 2333499999999999999999863
No 76
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=36.81 E-value=38 Score=26.53 Aligned_cols=46 Identities=7% Similarity=-0.010 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcC-----CCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREAD-----VYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaG-----I~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
..|+.+++.+.+.| ..++.| -.+. .....|...|.+++.+.|+++.
T Consensus 117 ~~g~~a~~~l~~~g~~~~~~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 170 (304)
T 3o1i_D 117 WMGYEAGKYLAERHPKGSGKTNIAL-LLGPRTRGGTKPVTTGFYEAIKNSDIHIV 170 (304)
T ss_dssp HHHHHHHHHHHTTSBTTTCCEEEEE-ECCCC-----CHHHHHHHHTTTTBTEEEE
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEE-EECCCCcchHHHHHHHHHHHHhcCCCEEE
Confidence 34566666666777 778776 2333 2345699999999999999875
No 77
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=35.98 E-value=42 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeEe
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.|+.+++.+. .|..++.| -.+. .....|...|.+++.+.|+.+..
T Consensus 110 ~g~~a~~~L~-~G~~~I~~-i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~ 157 (277)
T 3hs3_A 110 GGKESIKLLS-KKIEKVLI-QHWPLSLPTIRERIEAMTAEASKLKIDYLL 157 (277)
T ss_dssp HHHHHHHTSC-TTCCEEEE-EESCTTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHH-hCCCEEEE-EeCCCcCccHHHHHHHHHHHHHHCCCCCCC
Confidence 3555556666 89888887 2232 22456999999999999998764
No 78
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=35.96 E-value=45 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 144 AERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
++.|.++|+..+++. .+.. -..+++.+++.|+.+
T Consensus 94 v~~~~~~gi~~i~~~-~g~~-----~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 94 VEQAIKKGAKVVWFQ-YNTY-----NREASKKADEAGLII 127 (144)
T ss_dssp HHHHHHHTCSEEEEC-TTCC-----CHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCCEEEEC-CCch-----HHHHHHHHHHcCCEE
Confidence 467888999988884 4543 478889999999875
No 79
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=35.24 E-value=52 Score=26.21 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 132 DIPACLAIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 132 n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
|..+++.+++.|++++ .|-.++.| -.+. .....|...|.+++.+.|+++.
T Consensus 105 ~~~~g~~a~~~L~~~~--~G~~~I~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 157 (313)
T 2h3h_A 105 NYQAGYTAGLIMKELL--GGKGKVVI-GTGSLTAMNSLQRIQGFKDAIKDSEIEIV 157 (313)
T ss_dssp HHHHHHHHHHHHHHHH--TSCSEEEE-EESCSSCHHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHHHc--CCCCEEEE-EECCCCCccHHHHHHHHHHHhcCCCCEEE
Confidence 4455555555555443 27788776 2232 2235699999999999999864
No 80
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=35.04 E-value=59 Score=31.10 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCEEEEecCC------------CC-----chhhHHHHHHHHHHHCCcEeEeecC
Q 029747 142 ILAERAREADVYTASYTPRE------------RD-----KFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 142 lLA~RakeaGI~~vvfdDRg------------g~-----kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
-+|+.+++.|++-+++||-- .+ ++-+-++++++.+.+.|++|-++++
T Consensus 354 ~~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~~~d~~kFP~Glk~lv~~ih~~Glk~GlW~~ 417 (732)
T 2xn2_A 354 TIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKFGLWFE 417 (732)
T ss_dssp HHHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCCSBCTTTCTTCHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCccccCceeeCchhcCccHHHHHHHHHHcCCEEEEEeC
Confidence 36788899999999995221 11 2333499999999999999998864
No 81
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=35.00 E-value=65 Score=25.95 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHhc-----CCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeEe
Q 029747 144 AERAREA-----DVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 144 A~Rakea-----GI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~~ 185 (188)
|+...++ ||..|+|-.+..+--.-.+..-++.|+++||++.+
T Consensus 98 a~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 98 ADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRI 144 (190)
T ss_pred HHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEE
Confidence 4444455 99999992121110012356777889999999875
No 82
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=34.59 E-value=79 Score=26.70 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCc-----hhhHHHHHHHHHHHCCcEeEe
Q 029747 137 LAIGRILAERAREADVYTASYTPRERDK-----FEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 137 ~~vG~lLA~RakeaGI~~vvfdDRgg~k-----yhGrVkA~adalRe~GL~f~~ 185 (188)
+..|+.+++.+.+.|..++.| -.+... ...|...|.+++.+.|+...+
T Consensus 124 ~~~g~~a~~~L~~~G~r~I~~-i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 176 (412)
T 4fe7_A 124 YALVESAFLHLKEKGVNRFAF-YGLPESSGKRWATEREYAFRQLVAEEKYRGVV 176 (412)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE-ECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEE
T ss_pred HHHHHHHHHHHHHcCCceEEE-ecccccccccHHHHHHHHHHHHHHHcCCCccc
Confidence 345666667777789999887 233322 456999999999999987644
No 83
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=34.57 E-value=46 Score=24.76 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=25.5
Q ss_pred HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
+.|.++|+..+++ +.+.. -..+++.+++.|+.+
T Consensus 87 ~~~~~~g~~~i~~-~~~~~-----~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 87 KEAVEAGFKKLWF-QPGAE-----SEEIRRFLEKAGVEY 119 (138)
T ss_dssp HHHHHTTCCEEEE-CTTSC-----CHHHHHHHHHHTCEE
T ss_pred HHHHHcCCCEEEE-cCccH-----HHHHHHHHHHCCCEE
Confidence 4577899999888 45553 478888899999875
No 84
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=34.45 E-value=67 Score=25.87 Aligned_cols=50 Identities=8% Similarity=-0.117 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHC-CcEeE
Q 029747 132 DIPACLAIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDN-GIDVK 184 (188)
Q Consensus 132 n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~-GL~f~ 184 (188)
|..+++.+++.|++.+ .|..++.| -.+. .....|...|.+++.+. |+++.
T Consensus 118 ~~~~g~~a~~~L~~~~--~G~~~I~~-i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~ 171 (332)
T 2rjo_A 118 GVAYGEETATQLFKSM--GGKGGVVA-LGGIFSNVPAIERKAGLDAALKKFPGIQLL 171 (332)
T ss_dssp HHHHHHHHHHHHHHHT--TTCEEEEE-EECCTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred hHHHHHHHHHHHHHHc--CCCCeEEE-EECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 4444444444444321 68888776 2232 22356999999999999 99864
No 85
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=34.20 E-value=72 Score=26.14 Aligned_cols=53 Identities=6% Similarity=0.001 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCC-CEEEEecCCC--CchhhHHHHHHHHHHHCCcEeEe
Q 029747 131 SDIPACLAIGRILAERAREADV-YTASYTPRER--DKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 131 ~n~~AA~~vG~lLA~RakeaGI-~~vvfdDRgg--~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.+.++++..| .+|..+.+.|. .+|-| =-+. ....-|+.+|.+++++.|+++++
T Consensus 108 d~~~~~~lag-~~a~~l~~~Gh~r~Ig~-i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~ 163 (318)
T 2fqx_A 108 GQNEGSFLVG-VAAALKAKEAGKSAVGF-IVGMELGMMPLFEAGFEAGVKAVDPDIQV 163 (318)
T ss_dssp CHHHHHHHHH-HHHHHHHHHTTCCEEEE-EESCCSTTTHHHHHHHHHHHHHHCTTCEE
T ss_pred chHHHHHHHH-HHHHHHhccCCCcEEEE-EeCcccHHHHHHHHHHHHHHHHHCCCCEE
Confidence 3567788888 55777778897 66666 1222 23456899999999999987654
No 86
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=34.17 E-value=42 Score=26.18 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCC--CEEEEecC----CC---CchhhHHHHHHHHHHHCCcEeEe
Q 029747 139 IGRILAERAREADV--YTASYTPR----ER---DKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 139 vG~lLA~RakeaGI--~~vvfdDR----gg---~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.|+.+++.+.+.|- .++.| -. +. .....|...|.+++.+.|+.+.+
T Consensus 120 ~g~~a~~~l~~~g~~~~~i~~-i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~ 174 (304)
T 3gbv_A 120 SGYFAARMLMLLAVNDREIVI-FRKIHEGVIGSNQQESREIGFRQYMQEHHPACNI 174 (304)
T ss_dssp HHHHHHHHHHHHSTTCSEEEE-EEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHHhCCCCeEEE-EEecccCCccchhHHHHHHHHHHHHHhhCCCcEE
Confidence 35555666666676 77766 12 21 23467999999999999987654
No 87
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=33.61 E-value=52 Score=26.82 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcE
Q 029747 138 AIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGID 182 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~ 182 (188)
..|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.
T Consensus 160 ~~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~ 206 (333)
T 3jvd_A 160 AGFFQLTESVLGGSGMNIAA-LVGEESLSTTQERMRGISHAASIYGAE 206 (333)
T ss_dssp HHHHHHHHHHCCSSSCEEEE-EESCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCCCCeEEE-EeCCCCCccHHHHHHHHHHHHHHCCCC
Confidence 44566677777889999877 2232 23456999999999999997
No 88
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=33.59 E-value=38 Score=27.06 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=25.0
Q ss_pred HHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeEee
Q 029747 144 AERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~~~ 186 (188)
++...++||.+|+|- .. +... . ...+-|+++||++...
T Consensus 137 a~aIi~agI~rVVy~-~~-~~~~-~--~~~~~L~~aGIeV~~~ 174 (184)
T 2hvw_A 137 TKALLQAGVKKITYN-TA-YRIH-P--FAIELMTQKEVEYVQH 174 (184)
T ss_dssp HHHHHHHTEEEEEEE-EC-CSCC-H--HHHHHHHHHTCEEEEC
T ss_pred HHHHHHHCCCeEEEE-ec-CCCC-H--HHHHHHHHCCCEEEEe
Confidence 455667899999982 11 1111 1 1278899999998764
No 89
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=33.04 E-value=74 Score=27.53 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=33.9
Q ss_pred HHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 146 RAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 146 RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
-+++.|+..+.|-+.+|-++-.-++|+++++-+.|+-|+
T Consensus 176 ml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lE 214 (275)
T 3m6y_A 176 LVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALE 214 (275)
T ss_dssp HHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceEC
Confidence 456789999998788999999999999999999998554
No 90
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=32.44 E-value=30 Score=31.16 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHH-----------------HHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeEee
Q 029747 130 RSDIPACLAIGRI-----------------LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 130 ~~n~~AA~~vG~l-----------------LA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~~~ 186 (188)
..+.++|..+..+ +|..|.++|++.+-.+ .|..--..+++++++.+++.|+.+.+-
T Consensus 67 vp~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRIN-PGNig~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 67 VPHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRIN-PGNIGKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp CCSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEEC-HHHHSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEEC-CcccCchhHHHHHHHHHHHcCCCEEEe
Confidence 3456777777765 7888999999998883 454434568999999999999988763
No 91
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=32.30 E-value=74 Score=30.86 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCEEEEecCC-----------------CCchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 141 RILAERAREADVYTASYTPRE-----------------RDKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDRg-----------------g~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
.-+|+.+++.|++-+++||-- ..++-+-++.+++.+.+.|++|-+++.
T Consensus 350 l~~ad~~~~~G~e~fviDDGW~~~r~~d~~~~Gdw~~d~~kFP~Gl~~lv~~ih~~Glk~glW~~ 414 (745)
T 3mi6_A 350 MTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGMKFGLWFE 414 (745)
T ss_dssp HHHHHHHHHHTCCEEEECTTCBTTCSSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHcCCcEEEECcccccCCCCCcccCCCceeChhhcCccHHHHHHHHHHCCCEEEEEEc
Confidence 345777889999999996421 023445599999999999999998863
No 92
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=31.61 E-value=42 Score=25.06 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=25.2
Q ss_pred HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
+.|.++|+..+++ +.+.. -..+++.+++.|+.+
T Consensus 88 ~~~~~~g~~~i~i-~~~~~-----~~~l~~~a~~~Gi~~ 120 (145)
T 2duw_A 88 QEAIAIGAKTLWL-QLGVI-----NEQAAVLAREAGLSV 120 (145)
T ss_dssp HHHHHHTCCEEEC-CTTCC-----CHHHHHHHHTTTCEE
T ss_pred HHHHHcCCCEEEE-cCChH-----HHHHHHHHHHcCCEE
Confidence 3466789999888 45544 578888899999876
No 93
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=31.53 E-value=85 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
..++.+++-+.+.|.+++.+=.....--..+...|.+++.+.|+++.
T Consensus 121 ~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 167 (362)
T 3snr_A 121 IMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIV 167 (362)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEE
Confidence 34555566666789998775111211235689999999999999863
No 94
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=31.17 E-value=76 Score=24.63 Aligned_cols=44 Identities=11% Similarity=-0.078 Sum_probs=29.0
Q ss_pred HHHHHHHHHHh--cCCCEEEEecCCCC---chhhHHHHHHHHHHHC-CcEe
Q 029747 139 IGRILAERARE--ADVYTASYTPRERD---KFEGKIRAVVQSLIDN-GIDV 183 (188)
Q Consensus 139 vG~lLA~Rake--aGI~~vvfdDRgg~---kyhGrVkA~adalRe~-GL~f 183 (188)
.|+.+++.+.+ .|-.++.| -.+.. ....|..+|.+++.+. |+++
T Consensus 110 ~g~~~~~~l~~~~~g~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 159 (291)
T 3l49_A 110 IGAELALQMVADLGGKGNVLV-FNGFYSVPVCKIRYDQMKYVLEAFPDVKI 159 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-ECSCTTSHHHHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHHHcCCCceEEE-EeCCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence 34445555555 78888877 23322 2345899999999999 6873
No 95
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=29.87 E-value=63 Score=26.02 Aligned_cols=45 Identities=9% Similarity=0.142 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC----chhhHHHHHHHHHHHCCcEeE
Q 029747 139 IGRILAERAREADVYTASYTPRERD----KFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg~----kyhGrVkA~adalRe~GL~f~ 184 (188)
.|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.|+.+.
T Consensus 164 ~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 212 (332)
T 2hsg_A 164 AAFDAVQSLIDSGHKNIAF-VSGTLEEPINHAKKVKGYKRALTESGLPVR 212 (332)
T ss_dssp HHHHHHHHHHTTTCSCEEE-EESCTTSHHHHTTHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHCCCCEEEE-EeCCcccCccHHHHHHHHHHHHHHcCCCCC
Confidence 3555566666779888876 22322 235699999999999998764
No 96
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=29.64 E-value=57 Score=30.10 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHH-HHHhcCCCEEEEecCCC-------------CchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 131 SDIPACLAIGRILAE-RAREADVYTASYTPRER-------------DKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 131 ~n~~AA~~vG~lLA~-RakeaGI~~vvfdDRgg-------------~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
-|.+........+++ -.+++|++-++.||--. .++-+-++++++.+.+.|++|.+|++
T Consensus 44 i~e~~i~~~Ad~~~~~Gl~~~GyeyvvIDDGW~~~rd~~G~~~~d~~kFP~Glk~Lad~ih~~GlKfGIw~~ 115 (479)
T 3lrk_A 44 VSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSS 115 (479)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGTCCEEECCSSCEEEECTTSCEEECTTTCTTCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCccccCceEEEECCccccccCCCCCEecChhhcCCCHHHHHHHHHHCCCeeEEEec
Confidence 345555555555555 34457999999853211 23333499999999999999999864
No 97
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=29.32 E-value=52 Score=25.96 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=24.2
Q ss_pred HHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeEe
Q 029747 144 AERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~~ 185 (188)
|+...++||++|+|-+... ...|. ..+-|+++||++..
T Consensus 136 a~aIi~aGI~rVvy~~~~~-~~~~~---~~~~l~~aGI~v~~ 173 (193)
T 1vq2_A 136 AKAIAQSGIKKLVYCETYD-KNKPG---WDDILRNAGIEVFN 173 (193)
T ss_dssp HHHHHHHTCCEEEEEECCT-TCCTT---TTHHHHHTTCEEEE
T ss_pred HHHHHHhCCCEEEEecCCC-CcchH---HHHHHHHCCCEEEE
Confidence 4555678999999932222 11221 14678999999875
No 98
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=29.16 E-value=1.3e+02 Score=21.37 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 137 LAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 137 ~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
-.+|..+|+.+.+.|+.-+++ |+.. .+ ++.+++.|+.+
T Consensus 16 G~~G~~la~~L~~~g~~v~vi-d~~~----~~----~~~~~~~g~~~ 53 (140)
T 3fwz_A 16 GRVGSLLGEKLLASDIPLVVI-ETSR----TR----VDELRERGVRA 53 (140)
T ss_dssp SHHHHHHHHHHHHTTCCEEEE-ESCH----HH----HHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHCCCCEEEE-ECCH----HH----HHHHHHcCCCE
Confidence 468999999999999998889 5653 22 34445566654
No 99
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=28.33 E-value=79 Score=24.79 Aligned_cols=44 Identities=18% Similarity=0.055 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEe
Q 029747 139 IGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f 183 (188)
.|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|++.
T Consensus 125 ~~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 171 (293)
T 2iks_A 125 DAEMLAEELRKFPAETVLY-LGALPELSVSFLREQGFRTAWKDDPREV 171 (293)
T ss_dssp HHHHHHHHHHTSCCSSEEE-EEECTTSHHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHCCCCEEEE-EecCcccccHHHHHHHHHHHHHHcCCCc
Confidence 3455566666779888776 1222 223569999999999999843
No 100
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.52 E-value=50 Score=27.10 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEec-C-------C-----------CCchhhHHHHHHHHHHHCCcEe
Q 029747 138 AIGRILAERAREADVYTASYTP-R-------E-----------RDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdD-R-------g-----------g~kyhGrVkA~adalRe~GL~f 183 (188)
..|+.+++.+.+.|..++.|=- . | ......|...|.+++.+.|+.+
T Consensus 175 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 239 (366)
T 3h5t_A 175 KAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDP 239 (366)
T ss_dssp HHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCC
Confidence 3455666666678988876611 1 1 2234569999999999999875
No 101
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=27.35 E-value=82 Score=26.23 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEEecCCCCchh-------------hHHHHHHHHHHHCCcEeEeec
Q 029747 144 AERAREADVYTASYTPRERDKFE-------------GKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyh-------------GrVkA~adalRe~GL~f~~~~ 187 (188)
.++|.++|++.|.+ --.....| ..+...++.+++.|+.+.+++
T Consensus 86 i~~a~~ag~~~v~i-~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l 141 (298)
T 2cw6_A 86 FEAAVAAGAKEVVI-FGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYV 141 (298)
T ss_dssp HHHHHHTTCSEEEE-EEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCCEEEE-EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
No 102
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=27.19 E-value=1.4e+02 Score=23.40 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCEEEEecCCC
Q 029747 142 ILAERAREADVYTASYTPRER 162 (188)
Q Consensus 142 lLA~RakeaGI~~vvfdDRgg 162 (188)
-++++|++.|++.+.+||=..
T Consensus 20 e~v~~A~~~Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 20 AYLEEARAKGLKGVVFTDHSP 40 (267)
T ss_dssp HHHHHHHHTTCSEEEEEEECC
T ss_pred HHHHHHHHcCCCEEEEcCCCC
Confidence 578999999999999976544
No 103
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=26.99 E-value=87 Score=25.89 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
++++|++.|++.+.+||-.. ..| +..+.+.+++.||.+-
T Consensus 22 lv~~A~~~Gl~~iaiTDH~~--~~g-~~~~~~~~~~~gi~vi 60 (292)
T 2yb1_A 22 VIDRAAARAPALLALTDHDC--TGG-LAEAAAAAARRGIPFL 60 (292)
T ss_dssp HHHHHHTTCCSEEEECCBTC--CTT-HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHCCCCEEEEecCCc--ccc-HHHHHHHHHHcCCEEE
Confidence 89999999999999976643 233 3445666677887654
No 104
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=26.69 E-value=1.1e+02 Score=24.55 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
..++.+++-+.+.|.+++.+=.....--..+...|.+++.+.|+++.
T Consensus 137 ~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 183 (375)
T 4evq_A 137 QIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVV 183 (375)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEE
Confidence 34556666677779998765111211224579999999999999874
No 105
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=26.65 E-value=80 Score=26.10 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=26.7
Q ss_pred HHHHHhcCCCEEEEecCCCC----------chh---hHHHHHHHHHHHCCcEeEee
Q 029747 144 AERAREADVYTASYTPRERD----------KFE---GKIRAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~----------kyh---GrVkA~adalRe~GL~f~~~ 186 (188)
.++|+++|++.|.++ -... .+. ..+..+++.+++.|+.+..+
T Consensus 85 i~~a~~~G~~~V~i~-~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~ 139 (295)
T 1ydn_A 85 YEAAAAAHADEIAVF-ISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGY 139 (295)
T ss_dssp HHHHHHTTCSEEEEE-EESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCCCEEEEE-EecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 467888888887763 2222 122 24455678888888888744
No 106
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=26.41 E-value=86 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCEEEEecCCCCchh-------------hHHHHHHHHHHHCCcEeEeec
Q 029747 143 LAERAREADVYTASYTPRERDKFE-------------GKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRgg~kyh-------------GrVkA~adalRe~GL~f~~~~ 187 (188)
-.++|.++|++.|.+.+ .....| ..+..+++.+++.|+.+..+|
T Consensus 88 ~i~~a~~aG~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l 144 (302)
T 2ftp_A 88 GFEAALESGVKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYI 144 (302)
T ss_dssp HHHHHHHTTCCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46778889999988522 332232 356788899999999988654
No 107
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.27 E-value=49 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCC----CchhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRER----DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg----~kyhGrVkA~adalRe~GL~f~ 184 (188)
|+.+++.+.+.|..++.| -.+. .....|...|.+++.+.|+.+.
T Consensus 173 ~~~a~~~L~~~G~~~I~~-i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 220 (344)
T 3kjx_A 173 GREMAQAILKAGYRRIGF-MGTKMPLDYRARKRFEGFTEVLGKNGVEIE 220 (344)
T ss_dssp HHHHHHHHHHHTCCSCCE-EESSTTTCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHCCCCeEEE-EecCcccCccHHHHHHHHHHHHHHcCCCCC
Confidence 444555555568877665 1222 2235699999999999998764
No 108
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=25.97 E-value=67 Score=23.84 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=25.6
Q ss_pred HHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747 144 AERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f 183 (188)
++.|.++|+..++++ -+.. -..+++.+++.|+.+
T Consensus 87 ~~~~~~~gi~~i~~~-~g~~-----~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 87 LPEVLALRPGLVWLQ-SGIR-----HPEFEKALKEAGIPV 120 (140)
T ss_dssp HHHHHHHCCSCEEEC-TTCC-----CHHHHHHHHHTTCCE
T ss_pred HHHHHHcCCCEEEEc-CCcC-----HHHHHHHHHHcCCEE
Confidence 456778899988883 4543 378888999999875
No 109
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=25.94 E-value=1.5e+02 Score=25.28 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCEEEEecCCCCchhh---HHHHHHHHHHHCCcEeEeec
Q 029747 142 ILAERAREADVYTASYTPRERDKFEG---KIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 142 lLA~RakeaGI~~vvfdDRgg~kyhG---rVkA~adalRe~GL~f~~~~ 187 (188)
-..++|.++|.+.|.| |-....|.. ..+.+++-+...|+.++--|
T Consensus 88 e~i~~ai~~GFtSVMi-DgS~lp~eeNi~~Tk~vv~~ah~~gvsVEaEl 135 (286)
T 1gvf_A 88 DDIRRKVHAGVRSAMI-DGSHFPFAENVKLVKSVVDFCHSQDCSVEAEL 135 (286)
T ss_dssp HHHHHHHHTTCCEEEE-CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCeEEE-CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4567888999999999 677777766 56778888899999887543
No 110
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.57 E-value=1e+02 Score=24.96 Aligned_cols=43 Identities=5% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCEEEE-ecCCCCchhhHHHHHHHHHHHCCc
Q 029747 139 IGRILAERAREADVYTASY-TPRERDKFEGKIRAVVQSLIDNGI 181 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvf-dDRgg~kyhGrVkA~adalRe~GL 181 (188)
.|+.+++.+.+.|..++.| ..........|...|.+++.+.|+
T Consensus 165 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~ 208 (339)
T 3h5o_A 165 AGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADC 208 (339)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCC
Confidence 3455566666779988776 111122235699999999999998
No 111
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=25.47 E-value=1.2e+02 Score=27.05 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCch-hhHHHHHHHHHHHCCcEeEeec
Q 029747 140 GRILAERAREADVYTASYTPRERDKF-EGKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg~ky-hGrVkA~adalRe~GL~f~~~~ 187 (188)
..+|.+-|.+.||+.|++ ++....+ ..+-+++.+.+.+.||.+..+-
T Consensus 81 ~~~l~~l~~~~~~~~v~~-~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~ 128 (484)
T 1owl_A 81 QHLIPQLAQQLQAEAVYW-NQDIEPYGRDRDGQVAAALKTAGIRAVQLW 128 (484)
T ss_dssp HHHHHHHHHHTTCSEEEE-ECCCSHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEE-eccCChhHHHHHHHHHHHHHHcCcEEEEec
Confidence 456677778899999999 4554433 3467888888999999997753
No 112
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=25.30 E-value=1e+02 Score=23.87 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCc
Q 029747 133 IPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181 (188)
Q Consensus 133 ~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL 181 (188)
..+|+.+|+.||++ |+ .+++ |+.. |-..|+++++.++|-
T Consensus 19 ~~~A~~lg~~La~~----g~-~lV~---Ggg~--GiM~aa~~gAl~~gG 57 (171)
T 1weh_A 19 YARWVRYGEVLAEE----GF-GLAC---GGYQ--GGMEALARGVKAKGG 57 (171)
T ss_dssp HHHHHHHHHHHHHT----TE-EEEE---CCSS--THHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC----CC-EEEe---CChh--hHHHHHHHHHHHcCC
Confidence 46788888888875 42 2333 5543 999999999998774
No 113
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.30 E-value=93 Score=25.44 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcE
Q 029747 132 DIPACLAIGRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGID 182 (188)
Q Consensus 132 n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~ 182 (188)
|..+++.++ +.+.+.|..++.| -.+.. ....|...|.+++.+.|++
T Consensus 168 ~~~~~~~a~----~~L~~~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~g~~ 216 (348)
T 3bil_A 168 PQPGIAAAV----ELLAHNNALPIGY-LSGPMDTSTGRERLEDFKAACANSKIG 216 (348)
T ss_dssp CHHHHHHHH----HHHHHTTCCSEEE-ECCCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHH----HHHHHCCCCeEEE-EeCCCCCccHHHHHHHHHHHHHHcCcC
Confidence 455555554 4445568888877 23321 2356999999999999984
No 114
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=25.22 E-value=1.4e+02 Score=24.40 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 136 CLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 136 A~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
+.-||+-+|+++.+.|..-+.. |+. ..+...+++.+++.|-++.
T Consensus 16 s~GIG~aiA~~la~~Ga~Vv~~-~~~----~~~~~~~~~~i~~~g~~~~ 59 (254)
T 4fn4_A 16 GSGIGRAIAKKFALNDSIVVAV-ELL----EDRLNQIVQELRGMGKEVL 59 (254)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEE-ESC----HHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHcCCEEEEE-ECC----HHHHHHHHHHHHhcCCcEE
Confidence 3468999999999999876666 564 4678888888888886654
No 115
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=25.19 E-value=1.3e+02 Score=24.51 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCc
Q 029747 133 IPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181 (188)
Q Consensus 133 ~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL 181 (188)
..+|..+|+.||++ |+ .+++ |+. .|-..|+++++.++|-
T Consensus 55 ~~~A~~lg~~La~~----g~-~lVs---GGg--~GiM~aa~~gAl~~gG 93 (217)
T 1wek_A 55 YEAGYRLGRALAEA----GF-GVVT---GGG--PGVMEAVNRGAYEAGG 93 (217)
T ss_dssp HHHHHHHHHHHHHH----TC-EEEE---CSC--SHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC----CC-EEEe---CCh--hhHHHHHHHHHHHcCC
Confidence 46788899999875 43 3344 554 6999999999998763
No 116
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=24.66 E-value=1.1e+02 Score=24.57 Aligned_cols=45 Identities=13% Similarity=-0.082 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
++.+++-+.+.|.+++.+=.....--..+...|.+++.+.|+++.
T Consensus 127 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 171 (358)
T 3hut_A 127 GPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVV 171 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEE
Confidence 445555556669998765111211235689999999999999875
No 117
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=24.65 E-value=1.1e+02 Score=23.56 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCC---CchhhHHHHHHHHHHHCCcEeE
Q 029747 132 DIPACLAIGRILAERAREADVYTASYTPRER---DKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 132 n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f~ 184 (188)
|..+++..++.|.++.. |-.++.| -.+. .....|...|.+++++.|+.+.
T Consensus 105 ~~~~g~~a~~~L~~~g~--g~~~I~~-i~g~~~~~~~~~R~~Gf~~al~~~g~~~~ 157 (271)
T 2dri_A 105 NVLGGKIAGDYIAKKAG--EGAKVIE-LQGIAGTSAARERGEGFQQAVAAHKFNVL 157 (271)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCEEEE-EECCTTCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred hHHHHHHHHHHHHHHcC--CCCeEEE-EECCCCCccHhHHHHHHHHHHhcCCCEEE
Confidence 45556666666665431 4456665 1222 2235699999999999999764
No 118
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=24.63 E-value=1.7e+02 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC
Q 029747 138 AIGRILAERAREADVYTASYTPRE 161 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRg 161 (188)
.+|..+|+.+.+.|..-+.+ |+.
T Consensus 16 ~iG~~la~~L~~~g~~V~~i-d~~ 38 (141)
T 3llv_A 16 AAGVGLVRELTAAGKKVLAV-DKS 38 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEEE-ESC
T ss_pred HHHHHHHHHHHHCCCeEEEE-ECC
Confidence 48999999999999988888 564
No 119
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=24.51 E-value=89 Score=25.01 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcE
Q 029747 133 IPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182 (188)
Q Consensus 133 ~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~ 182 (188)
.++|+.+|+.||++ |+ .+++ -|+ ..|-..|+++++.++|-.
T Consensus 30 ~~~A~~lg~~la~~----g~-~lv~--GGG--~~GlM~a~~~ga~~~GG~ 70 (189)
T 3sbx_A 30 LELAGAVGAAIAAR----GW-TLVW--GGG--HVSAMGAVSSAARAHGGW 70 (189)
T ss_dssp HHHHHHHHHHHHHT----TC-EEEE--CCB--CSHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHC----CC-EEEE--CCC--ccCHHHHHHHHHHHcCCc
Confidence 36688888888854 54 3555 222 469999999999998743
No 120
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.11 E-value=1.2e+02 Score=23.53 Aligned_cols=44 Identities=7% Similarity=-0.138 Sum_probs=26.8
Q ss_pred HHHHHHHHHHh-cCCC-EEEEecCCC---CchhhHHHHHHHHHHHCCcEe
Q 029747 139 IGRILAERARE-ADVY-TASYTPRER---DKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 139 vG~lLA~Rake-aGI~-~vvfdDRgg---~kyhGrVkA~adalRe~GL~f 183 (188)
.|+.+++.+.+ .|.. ++.+ -.+. .....|...|.+++.+.|..+
T Consensus 112 ~g~~a~~~l~~~~g~~~~i~~-i~g~~~~~~~~~R~~gf~~~l~~~~~~~ 160 (303)
T 3d02_A 112 FAAEYVEHMAKRMGGKGGYVI-YVGSLTVPQHNLWADLLVKYQKEHYPDM 160 (303)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE-ECSCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHHHhCcCceEEE-EecCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 34455555555 6775 6655 1232 123568999999999876443
No 121
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=23.80 E-value=82 Score=27.34 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCEEEEecCCCCchh---------hHHHHHHHHHHHCCcEe
Q 029747 143 LAERAREADVYTASYTPRERDKFE---------GKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRgg~kyh---------GrVkA~adalRe~GL~f 183 (188)
++++|++.|++.+.++|-+.+..+ ..+..+.+.+.+.||.+
T Consensus 39 lv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~v 88 (343)
T 3e38_A 39 RVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILL 88 (343)
T ss_dssp HHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEE
Confidence 789999999999999776433211 23444556667777754
No 122
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=23.67 E-value=1.2e+02 Score=24.41 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
..++.+++-+.+.|.+++.+=..+..--.++...|.+++.+.|+++.
T Consensus 145 ~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 191 (386)
T 3sg0_A 145 IMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELT 191 (386)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEE
Confidence 34455566666789998765111212235689999999999999873
No 123
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=23.66 E-value=85 Score=25.64 Aligned_cols=44 Identities=11% Similarity=-0.083 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC---chhhHHHHHHHHHHHCCcEe
Q 029747 139 IGRILAERAREADVYTASYTPRERD---KFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 139 vG~lLA~RakeaGI~~vvfdDRgg~---kyhGrVkA~adalRe~GL~f 183 (188)
-|+.+++.+.+.|..++.| -.+.. ....|...|.+++.+.||.+
T Consensus 166 ~~~~a~~~L~~~G~~~I~~-i~g~~~~~~~~~R~~Gf~~al~~~gi~~ 212 (349)
T 1jye_A 166 GTRLGVEHLVALGHQQIAL-LAGPLSSVSARLRLAGWHKYLTRNQIQP 212 (349)
T ss_dssp HHHHHHHHHHHHTCCSEEE-EECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCEEEE-EeCCCCCccHHHHHHHHHHHHHHcCCCc
Confidence 3445555566678888776 22322 23568999999999999864
No 124
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=23.55 E-value=1.4e+02 Score=25.56 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCEEEEecCCCCchhh---HHHHHHHHHHHCCcEeEeec
Q 029747 143 LAERAREADVYTASYTPRERDKFEG---KIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRgg~kyhG---rVkA~adalRe~GL~f~~~~ 187 (188)
..++|.++|.+.|.| |-....|.. ..+.+++-+...|+.++--|
T Consensus 95 ~i~~ai~~GFtSVMi-DgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaEl 141 (288)
T 3q94_A 95 KCKEAIDAGFTSVMI-DASHHPFEENVETTKKVVEYAHARNVSVEAEL 141 (288)
T ss_dssp HHHHHHHHTCSEEEE-CCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHcCCCeEEE-eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467889999999999 677777765 56788888999999887543
No 125
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=23.51 E-value=1.8e+02 Score=20.44 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=28.6
Q ss_pred HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeEee
Q 029747 145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~~~ 186 (188)
+-+.+.++++|++. -. ...+..+..+++.+.+.|+.+.+.
T Consensus 59 ~~~~~~~id~viia-~~-~~~~~~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 59 RLIKKHCISTVLLA-VP-SASQVQKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp HHHHHHTCCEEEEC-CT-TSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred HHHHHCCCCEEEEe-CC-CCCHHHHHHHHHHHHHcCCeEEEC
Confidence 33445688998883 22 234568889999999999998764
No 126
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.51 E-value=88 Score=24.21 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=28.0
Q ss_pred HHHHHHHHHhc-C-CCEEEEecCCC---CchhhHHHHHHHHHHHCCcEe
Q 029747 140 GRILAERAREA-D-VYTASYTPRER---DKFEGKIRAVVQSLIDNGIDV 183 (188)
Q Consensus 140 G~lLA~Rakea-G-I~~vvfdDRgg---~kyhGrVkA~adalRe~GL~f 183 (188)
|+.+++.+.+. | ..++.| -.+. .....|...|.+++.+.|+.+
T Consensus 117 g~~~~~~L~~~~G~~~~i~~-i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 164 (289)
T 3brs_A 117 GIRIGAVTKNLVRKSGKIGV-ISFVKNSKTAMDREEGLKIGLSDDSNKI 164 (289)
T ss_dssp HHHHHHHHHHHTSSSCEEEE-EESCTTSHHHHHHHHHHHHHHGGGGGGE
T ss_pred HHHHHHHHHHHcCCCceEEE-EECCCCCccHHHHHHHHHHHHHhCCCcE
Confidence 44445555554 6 788776 2222 223569999999999999753
No 127
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=22.98 E-value=1.5e+02 Score=23.61 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 137 LAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 137 ~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
.-||+-+|+++.+.|..-+.. +|. ..+...+++.+++.|..+.
T Consensus 34 ~GIG~aia~~la~~G~~V~~~-~r~----~~~~~~~~~~l~~~~~~~~ 76 (279)
T 3sju_A 34 SGIGLAVARTLAARGIAVYGC-ARD----AKNVSAAVDGLRAAGHDVD 76 (279)
T ss_dssp SHHHHHHHHHHHHTTCEEEEE-ESC----HHHHHHHHHHHHTTTCCEE
T ss_pred CHHHHHHHHHHHHCCCEEEEE-eCC----HHHHHHHHHHHHhcCCcEE
Confidence 468999999999999875555 554 4566677777777665543
No 128
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=22.93 E-value=80 Score=26.03 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCC---C-----chhhHHHHHHHHHHHCCcEeEee
Q 029747 141 RILAERAREADVYTASYTPRER---D-----KFEGKIRAVVQSLIDNGIDVKIY 186 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDRgg---~-----kyhGrVkA~adalRe~GL~f~~~ 186 (188)
.-+++.|.+.|++.+.++|=.. + .+...+..+-+.+.+.++.++++
T Consensus 23 l~~~~~a~~~G~~~i~~T~H~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~i~I~ 76 (262)
T 3qy7_A 23 IEMARAAVRQGIRTIIATPHHNNGVYKNEPAAVREAADQLNKRLIKEDIPLHVL 76 (262)
T ss_dssp HHHHHHHHHTTCCEEECCCBSEETTEECCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEe
Confidence 3579999999999999964321 1 12334555555555666666654
No 129
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=22.69 E-value=1e+02 Score=29.31 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=40.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCCEEE---E----ecCCCCc---hh------h-HHHHHHHHHHHCCcE
Q 029747 127 LRSRSDIPACLAIGRILAERAREADVYTAS---Y----TPRERDK---FE------G-KIRAVVQSLIDNGID 182 (188)
Q Consensus 127 L~s~~n~~AA~~vG~lLA~RakeaGI~~vv---f----dDRgg~k---yh------G-rVkA~adalRe~GL~ 182 (188)
+..+-|.+.++.+|+++|+-+.+.||+-.. . +++++-. |+ | -..|+++++++.|+-
T Consensus 87 laat~d~~l~~~~g~~~a~E~~a~Gi~~~~aP~vdi~r~p~~gR~~e~fgeDP~l~~~~a~a~v~G~q~~gV~ 159 (721)
T 2x41_A 87 LASTWNRELLEEVGKAMGEEVREYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQGVG 159 (721)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHTTCSEECCCBCCCCCSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHTTTCB
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHhCCCEEeeceECCCCCCCCCcccccCCCCHHHHHHHHHHHHHHhhhCCeE
Confidence 355779999999999999999999998531 1 2333311 11 1 267899999999974
No 130
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=22.34 E-value=1.9e+02 Score=22.11 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcE
Q 029747 136 CLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182 (188)
Q Consensus 136 A~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~ 182 (188)
+--||+-+|+++.+.|.+-+.+ +|.. .+...+++.+++.|-+
T Consensus 22 sggiG~~la~~l~~~G~~V~~~-~r~~----~~~~~~~~~l~~~~~~ 63 (260)
T 3awd_A 22 AQNIGLACVTALAEAGARVIIA-DLDE----AMATKAVEDLRMEGHD 63 (260)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEE-ESCH----HHHHHHHHHHHHTTCC
T ss_pred CchHHHHHHHHHHHCCCEEEEE-eCCH----HHHHHHHHHHHhcCCc
Confidence 3468999999999999754455 5653 3444555555555533
No 131
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=22.15 E-value=2e+02 Score=22.92 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeE
Q 029747 136 CLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 136 A~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~ 184 (188)
+.-||+-+|+++.+.|..-+.. +|. ..+...+++.+.+.|-.+.
T Consensus 13 s~GIG~aia~~la~~G~~V~~~-~r~----~~~~~~~~~~l~~~~~~~~ 56 (264)
T 3tfo_A 13 SGGIGEGIARELGVAGAKILLG-ARR----QARIEAIATEIRDAGGTAL 56 (264)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEE-ESS----HHHHHHHHHHHHHTTCEEE
T ss_pred ccHHHHHHHHHHHHCCCEEEEE-ECC----HHHHHHHHHHHHhcCCcEE
Confidence 3468999999999999865555 554 3466777777777665543
No 132
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=22.12 E-value=1.1e+02 Score=24.00 Aligned_cols=50 Identities=4% Similarity=0.035 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcC--CCEEEEecCCCC---chhhHHHHHHHHHHHC-CcEeE
Q 029747 131 SDIPACLAIGRILAERAREAD--VYTASYTPRERD---KFEGKIRAVVQSLIDN-GIDVK 184 (188)
Q Consensus 131 ~n~~AA~~vG~lLA~RakeaG--I~~vvfdDRgg~---kyhGrVkA~adalRe~-GL~f~ 184 (188)
.|..+++..++.|.+.+ | -.++.| -.+.. ....|...|.++|.+. |+++.
T Consensus 113 D~~~~g~~a~~~L~~~~---G~~~~~I~~-i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~ 168 (288)
T 1gud_A 113 DNVAVGAKGASFIIDKL---GAEGGEVAI-IEGKAGNASGEARRNGATEAFKKASQIKLV 168 (288)
T ss_dssp CHHHHHHHHHHHHHHHH---GGGCEEEEE-EECSTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred ChHHHHHHHHHHHHHHh---CCCCCEEEE-EeCCCCCchHhHHHHHHHHHHHhCCCcEEE
Confidence 35556666666555543 6 667766 12221 2346999999999998 98753
No 133
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=21.90 E-value=1.4e+02 Score=29.27 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=40.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCCEEE---E----ecCCCC---chh------h-HHHHHHHHHHHCCcE
Q 029747 127 LRSRSDIPACLAIGRILAERAREADVYTAS---Y----TPRERD---KFE------G-KIRAVVQSLIDNGID 182 (188)
Q Consensus 127 L~s~~n~~AA~~vG~lLA~RakeaGI~~vv---f----dDRgg~---kyh------G-rVkA~adalRe~GL~ 182 (188)
+..+-|.+.++.+|+++|+-+...||+-.. . +++++- -|+ | -..|+++++++.|+-
T Consensus 70 laat~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~gV~ 142 (845)
T 3abz_A 70 LASTFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGIA 142 (845)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHTTCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHTTCB
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhCCee
Confidence 455779999999999999999999998631 1 233331 111 1 267899999999974
No 134
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=21.87 E-value=1.1e+02 Score=23.70 Aligned_cols=53 Identities=6% Similarity=-0.048 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHhc--CCCE--EEE-ecC-CCCchhhHHHHHHHHHHHC-CcEeE
Q 029747 132 DIPACLAIGRILAERAREA--DVYT--ASY-TPR-ERDKFEGKIRAVVQSLIDN-GIDVK 184 (188)
Q Consensus 132 n~~AA~~vG~lLA~Rakea--GI~~--vvf-dDR-gg~kyhGrVkA~adalRe~-GL~f~ 184 (188)
|..+++.+++.|++++-.. |..+ +.| ... +......|...|.+++.+. |+++.
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~ 166 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMV 166 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEE
Confidence 4566666666666553211 6776 544 211 1122356999999999999 98764
No 135
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=21.67 E-value=1.8e+02 Score=25.43 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCEEEEecCCCCchhh---HHHHHHHHHHHCCcEeEeec
Q 029747 142 ILAERAREADVYTASYTPRERDKFEG---KIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 142 lLA~RakeaGI~~vvfdDRgg~kyhG---rVkA~adalRe~GL~f~~~~ 187 (188)
.+.++|.++|.+.|.+ |-....|.. ..+.+++-+...|+.++--|
T Consensus 89 e~i~~ai~~GFtSVMi-DgS~~p~eENi~~Tk~vv~~ah~~gvsVEaEL 136 (323)
T 2isw_A 89 ESVKMAIDLGFSSVMI-DASHHPFDENVRITKEVVAYAHARSVSVEAEL 136 (323)
T ss_dssp HHHHHHHHTTCSEEEE-CCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHcCCCeEEe-cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4578999999999999 677777766 56778888889999887543
No 136
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.61 E-value=68 Score=24.94 Aligned_cols=54 Identities=4% Similarity=0.031 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHH-HhcCC--CEEEE-e-cCCCCchhhHHHHHHHHHHHC-CcEeE
Q 029747 131 SDIPACLAIGRILAERA-READV--YTASY-T-PRERDKFEGKIRAVVQSLIDN-GIDVK 184 (188)
Q Consensus 131 ~n~~AA~~vG~lLA~Ra-keaGI--~~vvf-d-DRgg~kyhGrVkA~adalRe~-GL~f~ 184 (188)
.|..+++.+++.|++++ -..+. .++.| . +.+......|...|.+++.+. |+++.
T Consensus 111 D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~ 170 (293)
T 3l6u_A 111 NNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIV 170 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEe
Confidence 35666777777777653 22211 15554 1 122223456999999999999 99875
No 137
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=21.53 E-value=96 Score=24.31 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=26.3
Q ss_pred HHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEeEe
Q 029747 144 AERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f~~ 185 (188)
.+.|.+.|+..|++ ..|.......+..+++.+.+.||.+-+
T Consensus 90 i~~A~~lGa~~v~~-~~g~~~~~~~l~~l~~~a~~~Gv~l~l 130 (264)
T 1yx1_A 90 LRRAEACGAGWLKV-SLGLLPEQPDLAALGRRLARHGLQLLV 130 (264)
T ss_dssp HHHHHHTTCSEEEE-EEECCCSSCCHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHcCCCEEEE-ecCCCCcHHHHHHHHHHHHhcCCEEEE
Confidence 55666777877776 234333333677777888888877644
No 138
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=21.42 E-value=1e+02 Score=28.50 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHH-HHHHhcCCCEEEEecCC--------C------CchhhHHHHHHHHHHHCCcEeEeecC
Q 029747 130 RSDIPACLAIGRILA-ERAREADVYTASYTPRE--------R------DKFEGKIRAVVQSLIDNGIDVKIYLD 188 (188)
Q Consensus 130 ~~n~~AA~~vG~lLA-~RakeaGI~~vvfdDRg--------g------~kyhGrVkA~adalRe~GL~f~~~~~ 188 (188)
.-|.+........++ .-+++.|++-|++||-- + .++-+-++++++-+++.||+|-+|.+
T Consensus 25 ~~~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d~~g~~~~~~~~fP~gl~~l~~~i~~~Glk~gi~~~ 98 (614)
T 3a21_A 25 KIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSAGNITVDTAEWPGGMSAITAYIHSKGLKAGIYTD 98 (614)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBCTTCCBCCCTTTSTTCHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCHHhhCCEEEEECCCcCCCCcCCCCCEEECccccCCcHHHHHHHHHHCCCeeEEEec
Confidence 345555555555543 44578899999995321 1 12444599999999999999999863
No 139
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=21.29 E-value=1e+02 Score=26.10 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=22.4
Q ss_pred HHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHC
Q 029747 144 AERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 179 (188)
Q Consensus 144 A~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~ 179 (188)
++++.+.|++.+.+-|..|...-..+..+++.+++.
T Consensus 163 ~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 198 (307)
T 1ydo_A 163 SEALFEFGISELSLGDTIGAANPAQVETVLEALLAR 198 (307)
T ss_dssp HHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 445556677766665566666666666666666654
No 140
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=21.20 E-value=1.3e+02 Score=24.67 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCch-hhHHHHHHHHHHHCCcEeE
Q 029747 140 GRILAERAREADVYTASYTPRERDKF-EGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 140 G~lLA~RakeaGI~~vvfdDRgg~ky-hGrVkA~adalRe~GL~f~ 184 (188)
++.+++-+.+.|.+++.+= -+...| ..+...|.+++.+.|+++.
T Consensus 128 ~~~~~~~l~~~g~~~ia~i-~~~~~~~~~~~~~~~~~l~~~G~~v~ 172 (385)
T 1pea_A 128 SAPLAAYLIRHYGERVVFI-GSDYIYPRESNHVMRHLYRQHGGTVL 172 (385)
T ss_dssp HHHHHHHHHTTTCSEEEEE-EESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHccCcEEEEE-eCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 5566677777888887651 122333 4588999999999999864
No 141
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=21.16 E-value=49 Score=26.44 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCEEEEec
Q 029747 141 RILAERAREADVYTASYTP 159 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdD 159 (188)
.-++++|.+.||+.+.+||
T Consensus 27 ~e~i~~A~~~Gi~~i~~Td 45 (247)
T 2wje_A 27 KALLAESYRQGVRTIVSTS 45 (247)
T ss_dssp HHHHHHHHHTTEEEEECCC
T ss_pred HHHHHHHHHCCCCEEEECC
Confidence 4679999999999999864
No 142
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=21.04 E-value=2.6e+02 Score=25.18 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=42.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhH--HHHHHHHHHHCCcEeEe
Q 029747 127 LRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGK--IRAVVQSLIDNGIDVKI 185 (188)
Q Consensus 127 L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGr--VkA~adalRe~GL~f~~ 185 (188)
....-+-+-++.+|.-+|.-..+.+...|+. -+- .++++. ..|++.+|..+|+++-.
T Consensus 37 ~~~~lt~~~~~~ig~A~~~~l~~~~~~~VvV-G~D-~R~ss~~~~~a~a~gl~a~Gi~V~~ 95 (485)
T 3uw2_A 37 IGKTLDADVARSIGRAFGSEVRAQGGDAVVV-ARD-GRLSGPELVGALADGLRAAGVDVVD 95 (485)
T ss_dssp BTTTBCHHHHHHHHHHHHHHHHHTTCCEEEE-EEC-SCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCCEEEE-EEC-CCcCHHHHHHHHHHHHHHCCCEEEE
Confidence 3445688999999999999888777677775 122 345564 45788999999998753
No 143
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=20.85 E-value=1.5e+02 Score=25.33 Aligned_cols=36 Identities=17% Similarity=0.009 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHH
Q 029747 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLID 178 (188)
Q Consensus 143 LA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe 178 (188)
+++++.+.|++.+.+-|..|...-..+..+++.+++
T Consensus 174 ~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~ 209 (337)
T 3ble_A 174 LVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQ 209 (337)
T ss_dssp HHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 345555666666655455555555555555555554
No 144
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=20.69 E-value=1.9e+02 Score=25.02 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCEEEEecCCCCchhh---HHHHHHHHHHHCCcEeEeec
Q 029747 142 ILAERAREADVYTASYTPRERDKFEG---KIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 142 lLA~RakeaGI~~vvfdDRgg~kyhG---rVkA~adalRe~GL~f~~~~ 187 (188)
-..++|.++|.+.|.+ |-+...|.. ..+.+++-+...|+.++--|
T Consensus 88 e~~~~ai~~GFtSVMi-DgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaEL 135 (307)
T 3n9r_A 88 ESCEKAVKAGFTSVMI-DASHHAFEENLELTSKVVKMAHNAGVSVEAEL 135 (307)
T ss_dssp HHHHHHHHHTCSEEEE-CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhCCCcEEE-ECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3456788999999999 677777765 56788889999999887543
No 145
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=20.68 E-value=1.7e+02 Score=23.32 Aligned_cols=46 Identities=7% Similarity=0.054 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCch-hhHHHHHHHHHHHCCcEeE
Q 029747 138 AIGRILAERAREADVYTASYTPRERDKF-EGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 138 ~vG~lLA~RakeaGI~~vvfdDRgg~ky-hGrVkA~adalRe~GL~f~ 184 (188)
..+..+++-+.+.|.+++.+= -..+.+ ..+..+|.+++.+.|+++.
T Consensus 125 ~~~~~~~~~l~~~g~~~ia~i-~~~~~~g~~~~~~~~~~l~~~g~~v~ 171 (368)
T 4eyg_A 125 QSSIIIGDWAAKNGIKKVATL-TSDYAPGNDALAFFKERFTAGGGEIV 171 (368)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-EESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEE-ecCchHhHHHHHHHHHHHHHcCCEEE
Confidence 445566666777899987651 111222 3468999999999999864
No 146
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=20.47 E-value=2.2e+02 Score=24.58 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCEEEEecCCCCchhh---HHHHHHHHHHHCCcEeEeec
Q 029747 142 ILAERAREADVYTASYTPRERDKFEG---KIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 142 lLA~RakeaGI~~vvfdDRgg~kyhG---rVkA~adalRe~GL~f~~~~ 187 (188)
-..++|.+.|.+.|.+ |-....|.. ..+.+++-+...|+.++--|
T Consensus 86 e~~~~ai~~GFtSVMi-DgS~~p~eENi~~Tk~vv~~ah~~gvsVEaEL 133 (305)
T 1rvg_A 86 ESVLRALRAGFTSVMI-DKSHEDFETNVRETRRVVEAAHAVGVTVEAEL 133 (305)
T ss_dssp HHHHHHHHTTCSEEEE-CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCeeee-CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4466888999999999 677777766 56778888999999887543
No 147
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=20.35 E-value=90 Score=25.05 Aligned_cols=50 Identities=6% Similarity=-0.014 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCC--C-chhhHHHHHHHHHHHC-CcEeE
Q 029747 132 DIPACLAIGRILAERAREADVYTASYTPRER--D-KFEGKIRAVVQSLIDN-GIDVK 184 (188)
Q Consensus 132 n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg--~-kyhGrVkA~adalRe~-GL~f~ 184 (188)
|..+++.+++.|++++ .|..++.| -.+. . ....|...|.+++.+. |+++.
T Consensus 110 ~~~~g~~a~~~L~~~~--~G~~~I~~-i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~ 163 (325)
T 2x7x_A 110 NYEIGRSVGNYIASSL--KGKGNIVE-LTGLSGSTPAMERHQGFMAAISKFPDIKLI 163 (325)
T ss_dssp HHHHHHHHHHHHHHHT--TTEEEEEE-EESCTTSHHHHHHHHHHHHHHHTCTEEEEE
T ss_pred HHHHHHHHHHHHHHHc--CCCceEEE-EECCCCCccHHHHHHHHHHHHHhCCCCEEE
Confidence 4455555555555432 37777766 2222 1 2356899999999999 98764
No 148
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=20.18 E-value=1.4e+02 Score=26.81 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCch-hhHHHHHHHHHHHCCcEeEeec
Q 029747 141 RILAERAREADVYTASYTPRERDKF-EGKIRAVVQSLIDNGIDVKIYL 187 (188)
Q Consensus 141 ~lLA~RakeaGI~~vvfdDRgg~ky-hGrVkA~adalRe~GL~f~~~~ 187 (188)
.+|.+-|.+.||+.|+++ +....+ .-+-.++.+.+.+.||.+..+-
T Consensus 91 ~~l~~l~~~~~~~~V~~~-~~~~p~~~~rd~~v~~~l~~~gi~~~~~~ 137 (509)
T 1u3d_A 91 ASLLDVVKSTGASQIFFN-HLYDPLSLVRDHRAKDVLTAQGIAVRSFN 137 (509)
T ss_dssp HHHHHHHHHHTCCEEEEE-CCCSHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe-cccCHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 566777788899999994 543222 3456677778888999987653
No 149
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.14 E-value=1.4e+02 Score=24.17 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCc
Q 029747 134 PACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181 (188)
Q Consensus 134 ~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL 181 (188)
.+|..+|+.||++ |+ .+++ |+ -..|-..|+++++.++|-
T Consensus 28 ~~A~~lg~~LA~~----g~-~lV~---GG-g~~GlM~aa~~gA~~~GG 66 (216)
T 1ydh_A 28 DAAIELGNELVKR----KI-DLVY---GG-GSVGLMGLISRRVYEGGL 66 (216)
T ss_dssp HHHHHHHHHHHHT----TC-EEEE---CC-CSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHC----CC-EEEE---CC-CcccHhHHHHHHHHHcCC
Confidence 5688888888864 54 3444 33 124899999999999863
No 150
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=20.01 E-value=2.3e+02 Score=22.01 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcE
Q 029747 137 LAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182 (188)
Q Consensus 137 ~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~ 182 (188)
.-||+-+|+++.+.|..-+.. +|. ..+...+++.+.+.|-.
T Consensus 17 ~gIG~aia~~l~~~G~~V~~~-~r~----~~~~~~~~~~l~~~~~~ 57 (247)
T 2jah_A 17 SGIGEATARALAAEGAAVAIA-ARR----VEKLRALGDELTAAGAK 57 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEE-ESC----HHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHCCCEEEEE-ECC----HHHHHHHHHHHHhcCCc
Confidence 468888999999988765455 564 24555666666655533
No 151
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=20.00 E-value=1.6e+02 Score=23.63 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCc---hhhHHHHHHHHHHHCCcEeE
Q 029747 137 LAIGRILAERAREADVYTASYTPRERDK---FEGKIRAVVQSLIDNGIDVK 184 (188)
Q Consensus 137 ~~vG~lLA~RakeaGI~~vvfdDRgg~k---yhGrVkA~adalRe~GL~f~ 184 (188)
.-||+-+|+++.+.|..-+.. +|.... ..+.+...++.+.+.|-.+.
T Consensus 19 ~GIG~aia~~l~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (285)
T 3sc4_A 19 RGIGLAIAKRVAADGANVALV-AKSAEPHPKLPGTIYTAAKEIEEAGGQAL 68 (285)
T ss_dssp SHHHHHHHHHHHTTTCEEEEE-ESCCSCCSSSCCCHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEE-ECChhhhhhhhHHHHHHHHHHHhcCCcEE
Confidence 368999999999999865555 576543 23356666666666665544
Done!