BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029748
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 209 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAK 268
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG +++ G+ + K + E G L
Sbjct: 269 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAG 323
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 324 EMSGHVFFKERWFGFDDGIYSAARLL 349
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 210 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAK 269
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG +++ G+ + K + E G L
Sbjct: 270 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAG 324
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 325 EMSGHVFFKERWFGFDDGIYSAARLL 350
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 209 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAK 268
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG +++ G+ + K + E G L
Sbjct: 269 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAG 323
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 324 EMSGHVFFKERWFGFDDGIYSAARLL 349
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 210 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAK 269
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG +++ G+ + K + E G L
Sbjct: 270 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAG 324
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 325 EMSGHVFFKERWFGFDDGIYSAARLL 350
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 210 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAK 269
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG +++ G+ + K + E G L
Sbjct: 270 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAG 324
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 325 EMSGHVFFKERWFGFDDGIYSAARLL 350
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 210 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAK 269
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG +++ G+ + K + E G L
Sbjct: 270 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAG 324
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 325 EMSGHVFFKERWFGFDDGIYSAARLL 350
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 210 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAK 269
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG +++ G+ + K + E G L
Sbjct: 270 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAG 324
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 325 EMSGHVFFKERWFGFDDGIYSAARLL 350
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
From P.aeruginosa
Length = 463
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 6/146 (4%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A V NADLG+ FD D DR GVV N G I D+L+ L +
Sbjct: 210 FPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLXLFAK 269
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
V+ +PG I+ D + + L I+ GG ++ G+ + K E G L
Sbjct: 270 DVVSRNPGADIIFDVKCTRRLIALISGYGGRPVXWKTGHSLIKKK---XKETG--ALLAG 324
Query: 122 ETSGHGALKENYF-LDDGAYMVVKII 146
E SGH KE +F DDG Y +++
Sbjct: 325 EXSGHVFFKERWFGFDDGIYSAARLL 350
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61
FPNH P+P + A + +A++G FD D DR GVV G I D+ + L +
Sbjct: 232 FPNHHPDPAHPENLQDVIAKLKATDAEIGFAFDGDGDRLGVVTKDGQIIYPDRQLMLFAE 291
Query: 62 IVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMM 121
VL +PG I+ D + + L +++ ++GG +++ G+ V K L E G L
Sbjct: 292 EVLSRNPGAQIIYDVKCTRNLARWVREKGGEPLMWKTGHSLVKAK---LRETG--APLAG 346
Query: 122 ETSGHGALKENYF-LDDGAYMVVKIIIQMVRM 152
E SGH K+ ++ DDG Y +++ + R+
Sbjct: 347 EMSGHVFFKDRWYGFDDGLYTGARLLEILARV 378
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 2 FPNHIPNPED---KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIAL 58
FP P P + K M + +A AD GV D D DR+ +D G I GDK AL
Sbjct: 212 FPARNPEPNEENLKEFMEIVKAL----GADFGVAQDGDADRAVFIDENGRFIQGDKTFAL 267
Query: 59 MSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETH 118
++ VLKE G +VT TS L G +VG ++ + ++ N I
Sbjct: 268 VADAVLKEKGGGLLVTTVATSNLLDDIAKKHGAKVMRTKVG-DLIVARALYENNGTIGG- 325
Query: 119 LMMETSGHGALKENYFLDDGAYMVVKII 146
E +G E+ DGA V K++
Sbjct: 326 ---EENGGVIFPEHVLGRDGAMTVAKVV 350
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 22 VLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH---PGTTIVTDART 78
V E AD+G+ FD D DR VD KGN ++GD+ I + A +KE T+V+ +
Sbjct: 249 VKEKGADIGLAFDGDGDRLIAVDEKGNIVDGDQ-IMFICAKYMKETGQLKHNTVVSTVMS 307
Query: 79 SMALTKFITDRGGNHCLYRVGYRNVIDK 106
++ K + G VG R V+++
Sbjct: 308 NLGFYKALEANGITSDKTAVGDRYVMEE 335
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60
T ++ + AV E ADLG+ D D DR +VD G I+GD ++ +++
Sbjct: 218 TCVSNIKKAVKEQKADLGISLDGDADRIIIVDENGQEIDGDGILNILA 265
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60
+F P P + + T V DLGV D D DR+ +D++G GD+ L+S
Sbjct: 209 LFSARQPEPTFDS-LKETAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLS 267
Query: 61 AIVLKEHPGTT--IVTDARTSMALTKFIT 87
++P IVT +S + ++++
Sbjct: 268 YWASVKNPKAIKKIVTAVSSSSLVEEYLS 296
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 22 VLENNADLGVVFDTDVDRSGVVDNKG--NPINGDKLIALMSAIVLKEHPGTTIVTDARTS 79
L++ DL + D D DR G+V +G NP N AL + PG + A TS
Sbjct: 274 ALKDRFDLAIGNDPDADRHGIVTPRGLMNP-NHYLAAALHHLYTTRSWPGAKVGKTAVTS 332
Query: 80 MALTKFITDRGGNHCLYRVGYRNVI 104
L + G VG+++ +
Sbjct: 333 ALLDRVAQALGREVYETPVGFKHFV 357
>pdb|2LPN|A Chain A, Solution Structure Of N-terminal Domain Of Human Conserved
Dopamine Neurotrophic Factor (cdnf)
Length = 105
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 100 YRNVIDKGVHLNEDGIETHLM---METSGHGALKEN---YFLDDGAYMVVKIIIQMVR 151
Y+++ID+GV+ + D IE L+ ++T G KEN Y+L KI+ ++ R
Sbjct: 22 YKSLIDRGVNFSLDTIEKELISFCLDTKG----KENRLCYYLGATKDAATKILSEVTR 75
>pdb|2W50|A Chain A, N-Terminal Domain Of Human Conserved Dopamine Neurotrophic
Factor (Cdnf)
pdb|2W50|B Chain B, N-Terminal Domain Of Human Conserved Dopamine Neurotrophic
Factor (Cdnf)
Length = 102
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 100 YRNVIDKGVHLNEDGIETHLM---METSGHGALKEN---YFLDDGAYMVVKIIIQMVR 151
Y+++ID+GV+ + D IE L+ ++T G KEN Y+L KI+ ++ R
Sbjct: 17 YKSLIDRGVNFSLDTIEKELISFCLDTKG----KENRLCYYLGATKDAATKILSEVTR 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,968,228
Number of Sequences: 62578
Number of extensions: 240497
Number of successful extensions: 499
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 21
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)