Query 029748
Match_columns 188
No_of_seqs 113 out of 1157
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02371 phosphoglucosamine mu 100.0 4.6E-37 9.9E-42 279.2 20.6 176 1-177 301-476 (583)
2 cd05800 PGM_like2 This PGM-lik 100.0 7.4E-37 1.6E-41 271.1 19.8 171 1-183 210-381 (461)
3 cd03089 PMM_PGM The phosphoman 100.0 9.3E-37 2E-41 269.4 19.9 163 1-174 200-363 (443)
4 PRK09542 manB phosphomannomuta 100.0 1.3E-36 2.7E-41 268.8 19.7 162 1-173 201-362 (445)
5 cd03084 phosphohexomutase The 100.0 3.6E-36 7.8E-41 258.8 19.8 163 1-174 149-312 (355)
6 PRK15414 phosphomannomutase Cp 100.0 3.6E-36 7.9E-41 266.5 19.6 165 1-176 212-376 (456)
7 cd03085 PGM1 Phosphoglucomutas 100.0 6.8E-36 1.5E-40 269.6 19.7 170 1-184 246-420 (548)
8 cd05799 PGM2 This CD includes 100.0 7E-36 1.5E-40 266.6 18.8 179 1-182 226-416 (487)
9 PTZ00150 phosphoglucomutase-2- 100.0 9.9E-36 2.1E-40 270.6 18.5 173 1-176 268-453 (584)
10 cd05803 PGM_like4 This PGM-lik 100.0 1.4E-34 3.1E-39 255.6 19.3 159 1-172 210-369 (445)
11 PRK14321 glmM phosphoglucosami 100.0 1.9E-34 4.2E-39 255.1 19.2 158 2-173 203-360 (449)
12 PRK07564 phosphoglucomutase; V 100.0 1E-34 2.3E-39 262.0 17.7 167 2-182 272-447 (543)
13 cd05801 PGM_like3 This bacteri 100.0 1.5E-34 3.3E-39 259.9 18.4 169 1-182 247-432 (522)
14 cd03087 PGM_like1 This archaea 100.0 5.9E-34 1.3E-38 251.2 19.5 159 1-173 201-359 (439)
15 cd05805 MPG1_transferase GTP-m 100.0 8E-34 1.7E-38 250.6 18.4 158 6-176 209-366 (441)
16 COG1109 {ManB} Phosphomannomut 100.0 1.2E-33 2.6E-38 250.9 19.6 163 1-175 215-378 (464)
17 PRK14324 glmM phosphoglucosami 100.0 2E-33 4.4E-38 248.4 19.6 148 13-171 221-370 (446)
18 PLN02307 phosphoglucomutase 100.0 1.7E-33 3.6E-38 255.1 18.6 172 1-183 263-452 (579)
19 PRK10887 glmM phosphoglucosami 100.0 2.4E-33 5.3E-38 247.7 18.0 150 12-172 216-366 (443)
20 PRK14315 glmM phosphoglucosami 100.0 3.4E-33 7.5E-38 247.0 18.5 151 12-173 221-373 (448)
21 TIGR01132 pgm phosphoglucomuta 100.0 6.9E-33 1.5E-37 250.2 18.2 169 1-183 264-449 (543)
22 cd05802 GlmM GlmM is a bacteri 100.0 1.5E-32 3.3E-37 242.0 19.6 151 12-173 214-366 (434)
23 PRK14317 glmM phosphoglucosami 100.0 1.5E-32 3.2E-37 244.0 19.3 156 7-174 229-386 (465)
24 TIGR01455 glmM phosphoglucosam 100.0 1.9E-32 4.2E-37 241.9 18.4 151 12-173 217-369 (443)
25 KOG1220 Phosphoglucomutase/pho 100.0 4.5E-33 9.8E-38 245.1 14.1 174 1-176 287-470 (607)
26 PRK14314 glmM phosphoglucosami 100.0 3.2E-32 6.9E-37 241.0 19.3 147 13-170 223-371 (450)
27 PRK14316 glmM phosphoglucosami 100.0 4.2E-32 9.2E-37 240.0 19.1 147 13-170 219-367 (448)
28 PRK14319 glmM phosphoglucosami 100.0 2E-31 4.4E-36 234.7 18.2 148 13-173 208-357 (430)
29 PRK14322 glmM phosphoglucosami 100.0 2.9E-31 6.4E-36 233.6 18.3 149 12-173 210-360 (429)
30 PRK14323 glmM phosphoglucosami 100.0 3.1E-31 6.6E-36 234.1 18.0 146 12-172 218-363 (440)
31 PRK14318 glmM phosphoglucosami 100.0 8E-31 1.7E-35 232.0 18.8 148 12-170 220-369 (448)
32 PRK14320 glmM phosphoglucosami 100.0 1.7E-30 3.6E-35 229.6 19.4 145 12-167 217-361 (443)
33 cd03088 ManB ManB is a bacteri 100.0 6.4E-31 1.4E-35 233.2 16.6 162 2-175 201-372 (459)
34 PF02880 PGM_PMM_III: Phosphog 99.9 2.1E-27 4.5E-32 173.7 12.0 112 51-173 1-113 (113)
35 cd03086 PGM3 PGM3 (phosphogluc 99.9 7.4E-27 1.6E-31 209.3 17.1 162 6-178 229-442 (513)
36 PTZ00302 N-acetylglucosamine-p 99.9 4.2E-23 9.1E-28 186.8 17.9 162 5-177 287-505 (585)
37 PLN02895 phosphoacetylglucosam 99.9 4.9E-23 1.1E-27 185.3 16.0 161 5-178 252-480 (562)
38 KOG0625 Phosphoglucomutase [Ca 99.9 8.5E-23 1.8E-27 174.4 12.7 171 1-183 252-427 (558)
39 COG0033 Pgm Phosphoglucomutase 99.8 1.4E-21 3E-26 168.2 7.4 175 1-184 243-428 (524)
40 PF02879 PGM_PMM_II: Phosphogl 99.2 2.7E-11 5.8E-16 86.8 5.4 46 1-47 58-104 (104)
41 KOG2537 Phosphoglucomutase/pho 98.2 4.1E-06 8.8E-11 74.3 7.7 93 29-126 279-382 (539)
42 TIGR01123 ilvE_II branched-cha 82.3 8.1 0.00018 32.7 7.9 73 19-106 167-248 (313)
43 PF13199 Glyco_hydro_66: Glyco 77.6 12 0.00026 34.6 7.9 108 15-123 247-364 (559)
44 COG1979 Uncharacterized oxidor 74.4 4.3 9.3E-05 35.2 3.8 34 1-35 61-94 (384)
45 PRK08868 flagellar protein Fla 67.1 31 0.00066 26.2 6.6 51 13-63 75-131 (144)
46 PF03646 FlaG: FlaG protein; 60.1 29 0.00063 24.4 5.2 50 13-62 41-96 (107)
47 PRK08452 flagellar protein Fla 59.7 56 0.0012 24.1 6.8 50 13-62 57-112 (124)
48 PRK07544 branched-chain amino 59.0 71 0.0015 26.6 8.2 69 19-104 169-244 (292)
49 cd06395 PB1_Map2k5 PB1 domain 56.9 22 0.00048 24.4 3.8 43 15-64 29-71 (91)
50 PRK07738 flagellar protein Fla 53.8 81 0.0018 23.1 6.7 51 13-63 50-106 (117)
51 TIGR01122 ilvE_I branched-chai 49.9 1.1E+02 0.0024 25.4 8.0 68 20-103 164-238 (298)
52 PF05991 NYN_YacP: YacP-like N 49.3 1.2E+02 0.0026 23.3 7.6 78 20-98 37-122 (166)
53 PRK06680 D-amino acid aminotra 47.1 80 0.0017 26.2 6.6 66 19-103 160-235 (286)
54 PRK07849 4-amino-4-deoxychoris 46.9 1.2E+02 0.0026 25.3 7.7 70 19-104 170-246 (292)
55 PRK06606 branched-chain amino 44.0 1.5E+02 0.0032 24.9 7.8 69 19-103 171-246 (306)
56 PRK13356 aminotransferase; Pro 42.9 1.3E+02 0.0029 24.9 7.3 71 18-104 163-240 (286)
57 PF07676 PD40: WD40-like Beta 42.8 9 0.00019 21.5 0.2 23 23-45 6-28 (39)
58 cd01557 BCAT_beta_family BCAT_ 42.7 1.4E+02 0.0031 24.6 7.5 70 19-104 153-230 (279)
59 cd01559 ADCL_like ADCL_like: 4 42.5 1.6E+02 0.0034 23.7 7.6 68 20-103 136-210 (249)
60 COG2433 Uncharacterized conser 42.0 1.9E+02 0.0041 27.3 8.5 66 28-99 244-320 (652)
61 smart00135 LY Low-density lipo 41.8 28 0.00061 19.2 2.3 18 29-46 12-29 (43)
62 PF00571 CBS: CBS domain CBS d 41.3 74 0.0016 18.8 4.3 33 13-45 16-48 (57)
63 TIGR00689 rpiB_lacA_lacB sugar 41.2 61 0.0013 24.5 4.6 31 7-37 35-66 (144)
64 PRK12479 branched-chain amino 39.7 1.7E+02 0.0037 24.4 7.6 69 20-104 164-239 (299)
65 TIGR01120 rpiB ribose 5-phosph 39.2 66 0.0014 24.3 4.5 31 7-37 36-67 (143)
66 cd00640 Trp-synth-beta_II Tryp 38.7 2E+02 0.0044 22.9 9.2 56 52-108 59-114 (244)
67 PRK09860 putative alcohol dehy 38.2 54 0.0012 28.6 4.4 32 2-34 65-96 (383)
68 PF02502 LacAB_rpiB: Ribose/Ga 38.0 42 0.00091 25.2 3.2 31 7-37 36-67 (140)
69 cd01558 D-AAT_like D-Alanine a 38.0 1.9E+02 0.0042 23.5 7.5 70 19-104 153-229 (270)
70 COG0031 CysK Cysteine synthase 37.9 55 0.0012 27.9 4.2 40 70-109 88-130 (300)
71 PF01436 NHL: NHL repeat; Int 37.0 46 0.00099 17.4 2.5 18 28-46 4-21 (28)
72 PRK06732 phosphopantothenate-- 36.6 2.1E+02 0.0047 23.0 7.5 37 12-48 166-207 (229)
73 PRK00103 rRNA large subunit me 36.2 83 0.0018 24.1 4.7 28 36-63 66-93 (157)
74 PLN02883 Branched-chain amino 36.0 2E+02 0.0044 25.3 7.6 70 20-105 244-322 (384)
75 PRK15454 ethanol dehydrogenase 35.9 58 0.0013 28.6 4.3 32 2-34 83-114 (395)
76 cd08179 NADPH_BDH NADPH-depend 34.9 65 0.0014 27.9 4.4 32 2-34 58-89 (375)
77 PRK05571 ribose-5-phosphate is 34.3 88 0.0019 23.8 4.5 26 12-37 44-69 (148)
78 PRK02991 D-serine dehydratase; 34.2 3.1E+02 0.0066 24.7 8.6 38 69-106 182-219 (441)
79 TIGR03461 pabC_Proteo aminodeo 34.1 2.4E+02 0.0053 22.8 7.5 68 20-103 150-224 (261)
80 smart00116 CBS Domain in cysta 33.6 81 0.0017 16.8 3.5 30 15-44 11-40 (49)
81 smart00415 HSF heat shock fact 33.2 54 0.0012 23.1 3.1 32 15-46 6-37 (105)
82 COG0698 RpiB Ribose 5-phosphat 32.9 89 0.0019 23.9 4.3 36 2-37 32-69 (151)
83 COG0079 HisC Histidinol-phosph 32.8 3.3E+02 0.0071 23.6 8.4 47 52-100 84-130 (356)
84 PRK15138 aldehyde reductase; P 32.6 72 0.0016 27.9 4.3 33 2-35 62-94 (387)
85 cd06447 D-Ser-dehyd D-Serine d 32.4 3E+02 0.0066 24.4 8.2 35 69-103 159-193 (404)
86 PF11576 DUF3236: Protein of u 32.3 61 0.0013 24.7 3.2 38 15-52 81-123 (154)
87 cd08181 PPD-like 1,3-propanedi 31.7 80 0.0017 27.2 4.4 32 2-34 60-91 (357)
88 PRK09620 hypothetical protein; 31.6 2.4E+02 0.0051 22.8 6.9 37 12-48 160-201 (229)
89 PRK08622 galactose-6-phosphate 31.5 1.1E+02 0.0023 24.0 4.6 31 7-37 37-68 (171)
90 cd08186 Fe-ADH8 Iron-containin 31.2 82 0.0018 27.4 4.4 32 2-34 61-92 (383)
91 PF10087 DUF2325: Uncharacteri 31.1 63 0.0014 22.2 3.0 31 79-109 64-95 (97)
92 COG1875 NYN ribonuclease and A 30.5 94 0.002 27.7 4.5 62 38-111 352-413 (436)
93 PRK12615 galactose-6-phosphate 30.2 1.1E+02 0.0025 23.8 4.6 31 7-37 37-68 (171)
94 cd08185 Fe-ADH1 Iron-containin 30.0 84 0.0018 27.3 4.3 32 2-34 60-91 (380)
95 cd08176 LPO Lactadehyde:propan 29.9 90 0.0019 27.1 4.4 33 2-35 62-94 (377)
96 cd08178 AAD_C C-terminal alcoh 29.6 87 0.0019 27.4 4.3 33 2-35 55-87 (398)
97 TIGR01119 lacB galactose-6-pho 29.6 1.1E+02 0.0025 23.8 4.5 30 8-37 38-68 (171)
98 cd08358 Glo_EDI_BRP_like_21 Th 29.2 64 0.0014 23.6 2.9 18 28-45 110-127 (127)
99 COG1778 Low specificity phosph 28.9 2.6E+02 0.0056 21.8 6.2 70 31-101 11-84 (170)
100 COG4321 Uncharacterized protei 28.8 61 0.0013 23.0 2.6 30 137-174 33-62 (102)
101 PRK06443 chorismate mutase; Va 28.7 1.3E+02 0.0028 23.7 4.6 29 66-95 104-132 (177)
102 PLN03117 Branched-chain-amino- 28.3 3.3E+02 0.0071 23.6 7.6 68 20-103 211-287 (355)
103 PRK06110 hypothetical protein; 28.2 3.7E+02 0.0079 22.7 8.7 32 70-101 96-127 (322)
104 KOG1252 Cystathionine beta-syn 28.1 96 0.0021 27.1 4.1 33 69-101 127-161 (362)
105 PRK06092 4-amino-4-deoxychoris 28.0 3.3E+02 0.0071 22.1 7.7 68 20-103 152-226 (268)
106 PLN02565 cysteine synthase 27.7 1.8E+02 0.0039 24.7 5.8 29 70-98 93-121 (322)
107 COG1454 EutG Alcohol dehydroge 27.6 1E+02 0.0023 27.1 4.4 48 2-61 63-110 (377)
108 cd08193 HVD 5-hydroxyvalerate 27.4 1E+02 0.0022 26.7 4.3 32 2-34 60-91 (376)
109 PRK13410 molecular chaperone D 27.2 4.3E+02 0.0093 25.1 8.7 72 27-98 87-170 (668)
110 PF00447 HSF_DNA-bind: HSF-typ 27.1 35 0.00076 23.8 1.2 31 15-45 3-33 (103)
111 TIGR02638 lactal_redase lactal 27.1 1E+02 0.0023 26.7 4.4 33 2-35 63-95 (379)
112 PTZ00215 ribose 5-phosphate is 26.8 1.4E+02 0.003 22.8 4.5 30 8-37 42-72 (151)
113 PRK02539 hypothetical protein; 26.5 45 0.00097 23.0 1.5 21 38-58 49-69 (85)
114 cd08189 Fe-ADH5 Iron-containin 26.5 1.1E+02 0.0024 26.5 4.4 32 2-34 60-91 (374)
115 cd04607 CBS_pair_NTP_transfera 25.9 1.5E+02 0.0033 19.8 4.4 33 14-46 12-44 (113)
116 PF14801 GCD14_N: tRNA methylt 25.6 48 0.001 20.9 1.4 15 36-50 8-22 (54)
117 TIGR02114 coaB_strep phosphopa 25.5 3.3E+02 0.0071 21.8 6.8 36 12-47 165-205 (227)
118 PF13467 RHH_4: Ribbon-helix-h 25.4 87 0.0019 20.5 2.7 29 137-173 20-48 (67)
119 cd08182 HEPD Hydroxyethylphosp 25.3 1.1E+02 0.0024 26.3 4.2 32 2-34 54-85 (367)
120 PRK08320 branched-chain amino 25.2 3.9E+02 0.0084 22.0 7.4 68 20-104 163-238 (288)
121 cd04618 CBS_pair_5 The CBS dom 24.7 1.6E+02 0.0035 19.7 4.2 34 13-46 59-93 (98)
122 TIGR03405 Phn_Fe-ADH phosphona 24.3 1.3E+02 0.0028 25.9 4.4 32 2-34 55-88 (355)
123 cd08190 HOT Hydroxyacid-oxoaci 24.2 1.3E+02 0.0028 26.6 4.4 32 2-34 57-88 (414)
124 COG1926 Predicted phosphoribos 24.1 3.2E+02 0.0069 22.3 6.2 66 32-101 119-187 (220)
125 TIGR01118 lacA galactose-6-pho 24.0 1.6E+02 0.0036 22.1 4.4 27 12-38 41-67 (141)
126 PLN02259 branched-chain-amino- 23.4 4.3E+02 0.0094 23.2 7.5 71 19-105 247-326 (388)
127 cd07261 Glo_EDI_BRP_like_11 Th 23.4 2.1E+02 0.0046 19.2 4.7 38 13-50 71-110 (114)
128 PF14272 Gly_rich_SFCGS: Glyci 23.3 74 0.0016 22.6 2.2 26 17-42 37-62 (115)
129 cd04619 CBS_pair_6 The CBS dom 23.2 2.1E+02 0.0045 19.3 4.6 33 14-46 11-43 (114)
130 PRK12613 galactose-6-phosphate 23.1 1.6E+02 0.0035 22.2 4.2 27 12-38 40-66 (141)
131 cd04582 CBS_pair_ABC_OpuCA_ass 22.9 2.3E+02 0.0049 18.5 5.2 31 15-45 12-42 (106)
132 TIGR01848 PHA_reg_PhaR polyhyd 22.6 3E+02 0.0066 19.8 5.3 59 14-91 21-80 (107)
133 cd08180 PDD 1,3-propanediol de 22.5 1.5E+02 0.0032 25.2 4.4 32 2-34 55-86 (332)
134 PRK10624 L-1,2-propanediol oxi 22.5 1.5E+02 0.0032 25.8 4.4 32 2-34 64-95 (382)
135 cd00449 PLPDE_IV PyridoxaL 5'- 22.4 4E+02 0.0088 21.2 7.9 70 19-104 139-215 (256)
136 PLN03013 cysteine synthase 22.3 3.6E+02 0.0078 24.2 6.8 30 70-99 201-230 (429)
137 TIGR03577 EF_0830 conserved hy 22.1 77 0.0017 22.6 2.1 25 17-41 37-61 (115)
138 cd04624 CBS_pair_11 The CBS do 21.9 2.3E+02 0.005 18.7 4.6 31 15-45 12-42 (112)
139 PF12681 Glyoxalase_2: Glyoxal 21.8 2.4E+02 0.0052 18.5 4.7 38 13-50 65-105 (108)
140 TIGR01124 ilvA_2Cterm threonin 21.8 5.2E+02 0.011 23.6 7.9 33 69-101 90-122 (499)
141 TIGR02035 D_Ser_am_lyase D-ser 21.8 3.5E+02 0.0076 24.2 6.7 40 69-108 177-216 (431)
142 PF06626 DUF1152: Protein of u 21.8 2.2E+02 0.0049 24.2 5.2 36 12-47 103-138 (297)
143 PRK01546 hypothetical protein; 21.7 62 0.0013 22.0 1.5 21 38-58 50-70 (79)
144 PF06117 DUF957: Enterobacteri 21.6 1.2E+02 0.0026 19.7 2.7 28 12-39 7-35 (65)
145 PF11429 Colicin_D: Colicin D; 21.5 1E+02 0.0022 21.6 2.5 29 27-55 50-78 (92)
146 PF15609 PRTase_2: Phosphoribo 21.3 4.3E+02 0.0093 21.1 7.0 56 37-95 121-183 (191)
147 PRK01688 histidinol-phosphate 21.3 5E+02 0.011 21.8 7.7 45 53-99 84-129 (351)
148 PF08812 YtxC: YtxC-like famil 21.2 1.5E+02 0.0032 24.0 3.9 45 16-61 123-170 (221)
149 cd08194 Fe-ADH6 Iron-containin 21.0 1.6E+02 0.0035 25.5 4.3 32 2-34 57-88 (375)
150 cd08192 Fe-ADH7 Iron-containin 21.0 1.7E+02 0.0036 25.2 4.5 32 2-34 58-89 (370)
151 PRK08638 threonine dehydratase 20.1 5.3E+02 0.011 22.0 7.3 39 70-108 101-139 (333)
No 1
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=4.6e-37 Score=279.15 Aligned_cols=176 Identities=65% Similarity=0.998 Sum_probs=160.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCH
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 80 (188)
.||+++|||+.+++++++.+.|++.+||+||++||||||++++|++|++|++|++++|+++++++.+++..||+|++||+
T Consensus 301 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDaDR~~vvD~~G~~i~gd~l~aLla~~ll~~~~g~~VV~~v~sS~ 380 (583)
T PLN02371 301 MFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTDVDRSAVVDSSGREINRNRLIALMSAIVLEEHPGTTIVTDSVTSD 380 (583)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCccceeEECCCCEEECHHHHHHHHHHHHHHhCCCCEEEEecccch
Confidence 49999999999999999999999999999999999999999999999999999999999999999877778999999999
Q ss_pred HHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 029748 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (188)
Q Consensus 81 ~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ 160 (188)
+++++|+++|+++++||+|++|++++|.+.+..+.+++||+|+|||++|+++.+.+||+++++++|++|+.+.....+.+
T Consensus 381 ~l~~ia~~~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~~a~~~ile~la~~~~~~~~~~ 460 (583)
T PLN02371 381 GLTTFIEKKGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGAYLAVKIIIELVRMRAAGAGGG 460 (583)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999998776555679999999999999999999999999999977766542233567
Q ss_pred hhhhHHHHhhhhhcCCc
Q 029748 161 IGMQRQKDLKPLKNSGN 177 (188)
Q Consensus 161 ls~~~l~~lp~~~~~~~ 177 (188)
|+++ ++++|+.+....
T Consensus 461 Lsel-~~~lp~~~~~~~ 476 (583)
T PLN02371 461 LGDL-IEDLEEPLEAVE 476 (583)
T ss_pred HHHH-HHhchhccCCce
Confidence 9999 999998887643
No 2
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=7.4e-37 Score=271.13 Aligned_cols=171 Identities=22% Similarity=0.290 Sum_probs=158.5
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC-CCCeEEEcCcCC
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH-PGTTIVTDARTS 79 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~-~~~~vv~~v~ss 79 (188)
+||+++|||+ +++++.+.+.|++.+||+|+++||||||+.++|++|+++++|++++|+++++++.. +.+.||+|+.||
T Consensus 210 ~F~~~~p~p~-~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~G~~l~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 288 (461)
T cd05800 210 LFGGIPPEPI-EKNLGELAEAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRGPVVKTVSTT 288 (461)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEECCCCCeEEEEeCCCceeCHHHHHHHHHHHHHHcCCCCCcEEEEcchH
Confidence 5999999999 78999999999999999999999999999999999999999999999999999873 345799999999
Q ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCC
Q 029748 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (188)
Q Consensus 80 ~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~ 159 (188)
++++++|+++|+++++||+|++|++++|.+.++ +||+|+|||++|+++.+++|||+++++++ +|++.. ++
T Consensus 289 ~~~~~~a~~~g~~v~~t~~G~~~v~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~a~l~il-e~la~~----~~ 358 (461)
T cd05800 289 HLIDRIAEKHGLPVYETPVGFKYIAEKMLEEDV-----LIGGEESGGLGIRGHIPERDGILAGLLLL-EAVAKT----GK 358 (461)
T ss_pred HHHHHHHHHhCCeeeeCCCCHHHHHHHHhhCCe-----EEEEcCcCceeCCCCCCCchHHHHHHHHH-HHHHhh----CC
Confidence 999999999999999999999999999998665 69999999999999999999999999888 777777 89
Q ss_pred ChhhhHHHHhhhhhcCCccccccc
Q 029748 160 GIGMQRQKDLKPLKNSGNTSRKEG 183 (188)
Q Consensus 160 ~ls~~~l~~lp~~~~~~~~~~~~~ 183 (188)
+|+++ ++++|++||..++.+++-
T Consensus 359 ~L~~l-~~~l~~~~g~~~~~~~~i 381 (461)
T cd05800 359 PLSEL-VAELEEEYGPSYYDRIDL 381 (461)
T ss_pred CHHHH-HHHHHHHhCCCceeecCe
Confidence 99999 999999999888877653
No 3
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=9.3e-37 Score=269.37 Aligned_cols=163 Identities=38% Similarity=0.575 Sum_probs=152.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCH
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 80 (188)
+||++.|||+.+++++.+.+.|++.++|+|+++||||||+.++|++|+++++|++++|+++++++..++..||+|++||.
T Consensus 200 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlgia~D~DaDR~~ivd~~G~~l~~d~~~~lla~~ll~~~~~~~vv~~v~ss~ 279 (443)
T cd03089 200 TFPNHHPDPTDPENLEDLIAAVKENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRNPGATIVYDVKCSR 279 (443)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecCCcceeEEECCCCcEeCHHHHHHHHHHHHHHHCCCCeEEEecccch
Confidence 48998999998899999999999999999999999999999999999999999999999999999876668999999999
Q ss_pred HHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCC-CCcCCCHHHHHHHHHHHHHHHHhcCCCC
Q 029748 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-NYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (188)
Q Consensus 81 ~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~-~~~~~Dgi~a~~~ll~em~~~~~~~~~~ 159 (188)
+++++|+++|+++++||||++|+.++|.+.++ +||+|+|||++|++ +.+++|||+++++++ +|++.+ ++
T Consensus 280 ~~~~ia~~~g~~v~~t~vG~k~v~~~m~~~~~-----~~ggE~sgg~~~~~~~~~~~Dgi~a~l~il-e~la~~----~~ 349 (443)
T cd03089 280 NLYDFIEEAGGKPIMWKTGHSFIKAKMKETGA-----LLAGEMSGHIFFKDRWYGFDDGIYAALRLL-ELLSKS----GK 349 (443)
T ss_pred HHHHHHHHcCCeEEEecCcHHHHHHHHHHhCC-----cEEEeccceEEEcCCcCCCccHHHHHHHHH-HHHHhc----CC
Confidence 99999999999999999999999999998776 59999999999999 999999999999877 788777 99
Q ss_pred ChhhhHHHHhhhhhc
Q 029748 160 GIGMQRQKDLKPLKN 174 (188)
Q Consensus 160 ~ls~~~l~~lp~~~~ 174 (188)
+|+++ ++++|+.+.
T Consensus 350 ~Lsel-~~~~p~~~~ 363 (443)
T cd03089 350 TLSEL-LADLPKYFS 363 (443)
T ss_pred CHHHH-HHhccccCC
Confidence 99999 999998443
No 4
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=1.3e-36 Score=268.75 Aligned_cols=162 Identities=29% Similarity=0.422 Sum_probs=151.5
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCH
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 80 (188)
+||+++|||+++++++.+.+.|++.+||+||++||||||+.++|++|+++++|++++|+++++++.+++..||+|++||+
T Consensus 201 ~Fp~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~ivd~~G~~l~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 280 (445)
T PRK09542 201 TFPNHEANPLDPANLVDLQAFVRETGADIGLAFDGDADRCFVVDERGQPVSPSAVTALVAARELAREPGATIIHNLITSR 280 (445)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCCCccHHHHHHHHHHHHHHHCCCCeEEEeeccch
Confidence 59999999998899999999999999999999999999999999999999999999999999998877778999999999
Q ss_pred HHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 029748 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (188)
Q Consensus 81 ~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ 160 (188)
+++++|+++|+++++||||++|++++|.+.++ ++|+|+|||++|+++++++|||+++++++ +|++.+ +++
T Consensus 281 ~~~~~a~~~g~~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sgg~~f~~~~~~~Dgi~a~~~ll-e~l~~~----~~~ 350 (445)
T PRK09542 281 AVPELVAERGGTPVRTRVGHSFIKALMAETGA-----IFGGEHSAHYYFRDFWGADSGMLAALHVL-AALGEQ----DRP 350 (445)
T ss_pred hHHHHHHHcCCeEEEecCcHHHHHHHHHHhCC-----cEEEeeeccEEecCcCCCCcHHHHHHHHH-HHHHhc----CCC
Confidence 99999999999999999999999999998775 69999999999999999999999999888 777776 899
Q ss_pred hhhhHHHHhhhhh
Q 029748 161 IGMQRQKDLKPLK 173 (188)
Q Consensus 161 ls~~~l~~lp~~~ 173 (188)
|+++ ++++|+.+
T Consensus 351 l~~l-~~~~~~~~ 362 (445)
T PRK09542 351 LSEL-MADYQRYA 362 (445)
T ss_pred HHHH-HHhhhhcC
Confidence 9999 99887543
No 5
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=3.6e-36 Score=258.76 Aligned_cols=163 Identities=26% Similarity=0.288 Sum_probs=151.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHh-CCCCeEEEcCcCC
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~-~~~~~vv~~v~ss 79 (188)
.||+++|||..+++++.+.+.|++.++|+|+++||||||+.++|++|+++++|++++|+++++++. .++..||+|+.||
T Consensus 149 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlG~a~DgDgDRl~~vd~~G~~l~~d~~~al~~~~l~~~~~~~~~vv~~v~ss 228 (355)
T cd03084 149 NFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFNPRGGVVKTVVSS 228 (355)
T ss_pred CCCCCCCCCCchhhHHHHHHHHHhcCCCEEEEEcCCCceeEEECCCCceeCHhHHHHHHHHHHHHhcCCCCCEEEEccch
Confidence 488899999988999999999999999999999999999999999999999999999999999864 4456799999999
Q ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCC
Q 029748 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (188)
Q Consensus 80 ~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~ 159 (188)
++++++|+++|++|++||+|++|+.++|.+.++ ++|+|+|||++|+++.+++|||+++++++ +|++.+ ++
T Consensus 229 ~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~~----~~ 298 (355)
T cd03084 229 GALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDV-----VLGGEESGGVIFPEFHPGRDGISAALLLL-EILANL----GK 298 (355)
T ss_pred HHHHHHHHHcCCcEEEecCcHHHHHHHHHhcCc-----eEEecCcCCEEECCcCCCCCHHHHHHHHH-HHHHHh----CC
Confidence 999999999999999999999999999998665 69999999999999999999999999888 788877 99
Q ss_pred ChhhhHHHHhhhhhc
Q 029748 160 GIGMQRQKDLKPLKN 174 (188)
Q Consensus 160 ~ls~~~l~~lp~~~~ 174 (188)
||+++ ++++|+.+.
T Consensus 299 ~Ls~l-~~~~p~~~~ 312 (355)
T cd03084 299 SLSEL-FSELPRYYY 312 (355)
T ss_pred CHHHH-HHHhhHhcc
Confidence 99999 999996663
No 6
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=3.6e-36 Score=266.55 Aligned_cols=165 Identities=27% Similarity=0.417 Sum_probs=153.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCH
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 80 (188)
.||+++|||+.+++++.+.++|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+++.+||.++.+|.
T Consensus 212 ~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vde~G~~l~~d~~~~l~a~~ll~~~~g~~vv~~~~~s~ 291 (456)
T PRK15414 212 NFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSW 291 (456)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcceEEEECCCCCEecHHHHHHHHHHHHHHhCCCCeeccCchhhh
Confidence 49999999999899999999999999999999999999999999999999999999999999998776667998888888
Q ss_pred HHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 029748 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (188)
Q Consensus 81 ~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ 160 (188)
.++++++++|+++++||||++|+.++|.+.++ ++|||+|||++|+++.+++|||+++++++ +|++.. +++
T Consensus 292 ~l~~~~~~~g~~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sgg~~~~~~~~~~Dgi~a~~~il-e~la~~----~~~ 361 (456)
T PRK15414 292 NTVDVVTAAGGTPVMSKTGHAFIKERMRKEDA-----IYGGEMSAHHYFRDFAYCDSGMIPWLLVA-ELVCLK----GKT 361 (456)
T ss_pred HHHHHHHHcCCEEEEecCcHHHHHHHHHhcCC-----eEEEcccceEEeCCCCCCccHHHHHHHHH-HHHHcc----CCC
Confidence 99999999999999999999999999998775 69999999999999999999999999877 787766 999
Q ss_pred hhhhHHHHhhhhhcCC
Q 029748 161 IGMQRQKDLKPLKNSG 176 (188)
Q Consensus 161 ls~~~l~~lp~~~~~~ 176 (188)
|+++ ++++|+.++..
T Consensus 362 L~~l-~~~~~~~~~~~ 376 (456)
T PRK15414 362 LGEL-VRDRMAAFPAS 376 (456)
T ss_pred HHHH-HHHHHHhcCCC
Confidence 9999 99999888753
No 7
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=6.8e-36 Score=269.61 Aligned_cols=170 Identities=16% Similarity=0.097 Sum_probs=155.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHh----CCC-CeEEEc
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE----HPG-TTIVTD 75 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~----~~~-~~vv~~ 75 (188)
+||+++|||+ ++.+.++.+.|++.+||+||++||||||++++|+ |+++.+++++++++.++++. .++ ..||+|
T Consensus 246 ~Fp~~~P~P~-~~~l~~L~~~V~~~~ADlGia~DgDaDRl~vvd~-G~~i~~d~~lall~~~ll~~~~~~~~~~~~VV~t 323 (548)
T cd03085 246 DFGGGHPDPN-LTYAKDLVELMKSGEPDFGAASDGDGDRNMILGK-GFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARS 323 (548)
T ss_pred CCCCCCCCCc-HHHHHHHHHHHhccCCCEEEEECCCCCceEEEec-CEEecCCHHHHHHHHHHHHhhhhhhcCCcEEEEe
Confidence 5999999999 7889999999999999999999999999999999 99999999999999888753 122 479999
Q ss_pred CcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhc
Q 029748 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (188)
Q Consensus 76 v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~ 155 (188)
++||.+++++|+++|+++++|+|||+||.++|.+... ++|+|+|||++ +++.+.+|||+++++++ +|++++
T Consensus 324 v~sS~~le~ia~~~G~~v~~t~vG~k~I~~~m~~~~~-----~~GgEeSgg~~-~~~~~~kDGi~aal~ll-ella~~-- 394 (548)
T cd03085 324 MPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGKL-----SLCGEESFGTG-SDHIREKDGLWAVLAWL-SILAHR-- 394 (548)
T ss_pred CccHHHHHHHHHHcCCcEEEcCchHHHHHHHHhcCCc-----eEEEeccCCcc-CCCccCCcHHHHHHHHH-HHHHHH--
Confidence 9999999999999999999999999999999998654 69999999985 88999999999999877 888887
Q ss_pred CCCCChhhhHHHHhhhhhcCCcccccccc
Q 029748 156 GSDEGIGMQRQKDLKPLKNSGNTSRKEGY 184 (188)
Q Consensus 156 ~~~~~ls~~~l~~lp~~~~~~~~~~~~~~ 184 (188)
++||+++ +++||++||..+|.|++-+
T Consensus 395 --g~tLsel-l~~i~~~~G~~~~~~~~~~ 420 (548)
T cd03085 395 --NVSVEDI-VKEHWQKYGRNFYTRYDYE 420 (548)
T ss_pred --CcCHHHH-HHHHHHHhCcceeeccccc
Confidence 9999999 9999999999999998765
No 8
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=7e-36 Score=266.55 Aligned_cols=179 Identities=21% Similarity=0.192 Sum_probs=160.4
Q ss_pred CCCC-CCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcC----CCccccchhHHHHHHHHHHHhC-------C
Q 029748 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN----KGNPINGDKLIALMSAIVLKEH-------P 68 (188)
Q Consensus 1 ~F~~-~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~----~G~~i~~d~~~~l~~~~~l~~~-------~ 68 (188)
+||+ +.|||+.++.++++.+.|++.++|+|+++||||||+.++|+ +|+++++|++++|++.++++.+ +
T Consensus 226 ~F~~~~~p~p~~~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~~~~~g~~~~~d~l~aL~a~~ll~~~~~~~~~~~ 305 (487)
T cd05799 226 DFPTVKFPNPEEPGALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKLPK 305 (487)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCCeEEEEEEcCCCCEEEECHHHHHHHHHHHHHHhHhhccCCCC
Confidence 4887 78999988999999999999999999999999999999995 4899999999999999998875 3
Q ss_pred CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHH
Q 029748 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~e 148 (188)
+..||+|++||++++++|+++|++|++||+|++|+.++|.+....+.++++|+|+|||++|+++.+.+||++++++++ |
T Consensus 306 ~~~vV~~v~sS~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e 384 (487)
T cd05799 306 NPVIVKTIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLA-E 384 (487)
T ss_pred CcEEEEeehhHHHHHHHHHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHH-H
Confidence 456999999999999999999999999999999999999986544446789999999999999999999999999888 7
Q ss_pred HHHHHhcCCCCChhhhHHHHhhhhhcCCcccccc
Q 029748 149 MVRMKLEGSDEGIGMQRQKDLKPLKNSGNTSRKE 182 (188)
Q Consensus 149 m~~~~~~~~~~~ls~~~l~~lp~~~~~~~~~~~~ 182 (188)
|++.. +..+++|+++ ++++|++|+...|+|.+
T Consensus 385 ~la~~-~~~~~~Ls~l-~~~l~~~y~~~~~~~~~ 416 (487)
T cd05799 385 MAAYL-KAQGKTLLDR-LDELYEKYGYYKEKTIS 416 (487)
T ss_pred HHHHH-HHcCCCHHHH-HHHHHHHhCceEEeeee
Confidence 77752 1238999999 99999999988888764
No 9
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=270.61 Aligned_cols=173 Identities=20% Similarity=0.198 Sum_probs=152.6
Q ss_pred CCCC-CCCCCCC-hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCC---ccccchhHHHHHHHHHHHhCC-------
Q 029748 1 MFPN-HIPNPED-KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG---NPINGDKLIALMSAIVLKEHP------- 68 (188)
Q Consensus 1 ~F~~-~~P~P~~-~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G---~~i~~d~~~~l~~~~~l~~~~------- 68 (188)
+||+ .+|||+. +++++.+.+.|++.++|+|+++||||||++++|+.| +++++|++++|+++++++.++
T Consensus 268 ~Fp~~~~PnPe~~~~~l~~~~~~v~~~~adlgia~DpDaDR~~vvd~~g~~~~~l~gd~l~aLla~~ll~~~~~~g~~~~ 347 (584)
T PTZ00150 268 EFPTVTFPNPEEGKGALKLSMETAEAHGSTVVLANDPDADRLAVAEKLNNGWKIFTGNELGALLAWWAMKRYRRQGIDKS 347 (584)
T ss_pred CCCCCCCcChhhhHHHHHHHHHHHHHhCCCEEEEeCCCCCceEEEEEcCCceEEcChhHHHHHHHHHHHHhhhhcCCCCC
Confidence 4888 5899997 899999999999999999999999999999998654 899999999999999998642
Q ss_pred CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCc-cceEEeeccCCeecCCCCcCCCHHHHHHHHHH
Q 029748 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGI-ETHLMMETSGHGALKENYFLDDGAYMVVKIII 147 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~-~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~ 147 (188)
+..||.|++||.+++++|+++|+++++|+|||+||.++|.+....+. +++||||||||++|+++.+.+|||+++++++
T Consensus 348 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG~~~~~~~~~kDgi~aal~il- 426 (584)
T PTZ00150 348 KCFFICTVVSSRMLKKMAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVA- 426 (584)
T ss_pred CcEEEEehhhhHHHHHHHHHcCCEEEECCCChHHHHHHHHHHHhcCCceEEEEEeccCcccCCCCCCCcHHHHHHHHHH-
Confidence 23599999999999999999999999999999999999987443322 4789999999999999999999999999777
Q ss_pred HHHHHHhcCCCCChhhhHHHHhhhhhcCC
Q 029748 148 QMVRMKLEGSDEGIGMQRQKDLKPLKNSG 176 (188)
Q Consensus 148 em~~~~~~~~~~~ls~~~l~~lp~~~~~~ 176 (188)
+|+++. +..|+||+++ +++||++||..
T Consensus 427 e~~~~l-~~~g~sL~e~-l~~l~~~~G~~ 453 (584)
T PTZ00150 427 EMALYL-YERGKTLVEH-LESLYKQYGYH 453 (584)
T ss_pred HHHHHH-HHcCCCHHHH-HHHHHHHHCCC
Confidence 886543 4449999999 99999999933
No 10
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.4e-34 Score=255.59 Aligned_cols=159 Identities=27% Similarity=0.354 Sum_probs=147.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHh-CCCCeEEEcCcCC
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~-~~~~~vv~~v~ss 79 (188)
.|| +.|+|. +++++.+.+.|++.++|+|+++||||||++++|++|+++++|++++|+++++++. .+...||+|++||
T Consensus 210 ~F~-~~p~p~-~~~l~~l~~~v~~~~adlgi~~D~DgDR~~ivd~~G~~i~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 287 (445)
T cd05803 210 LFP-HTPEPL-PENLTQLCAAVKESGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGPVVVNLSTS 287 (445)
T ss_pred CCC-CCCCCC-hHHHHHHHHHHHhcCCCEEEeeCCCCceEEEECCCCCCcChHHHHHHHHHHHHHhcCCCCCEEEeccch
Confidence 477 789999 7889999999999999999999999999999999999999999999999999984 3344699999999
Q ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCC
Q 029748 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (188)
Q Consensus 80 ~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~ 159 (188)
.+++++|+++|+++++||||++|++++|.+.++ ++|+|+|||++|+++.+.+|||+++++++ +|++.+ ++
T Consensus 288 ~~i~~ia~~~g~~v~~t~vG~~~i~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~~----~~ 357 (445)
T cd05803 288 RALEDIARKHGVPVFRSAVGEANVVEKMKEVDA-----VIGGEGNGGVILPDVHYGRDSLVGIALVL-QLLAAS----GK 357 (445)
T ss_pred HHHHHHHHHcCCEEEEecccHHHHHHHHHhcCC-----eEEEeccCCeecCCccccccHHHHHHHHH-HHHHhc----CC
Confidence 999999999999999999999999999998775 69999999999999999999999999888 777777 99
Q ss_pred ChhhhHHHHhhhh
Q 029748 160 GIGMQRQKDLKPL 172 (188)
Q Consensus 160 ~ls~~~l~~lp~~ 172 (188)
+|+++ ++++|+.
T Consensus 358 ~L~~l-~~~~~~~ 369 (445)
T cd05803 358 PLSEI-VDELPQY 369 (445)
T ss_pred CHHHH-HHhchhh
Confidence 99999 9999964
No 11
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.9e-34 Score=255.11 Aligned_cols=158 Identities=24% Similarity=0.344 Sum_probs=145.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHH
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMA 81 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~ 81 (188)
|| +.|+|. +++++++.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.++...||+|++||.+
T Consensus 203 f~-~~p~p~-~~~l~~l~~~v~~~~adlGia~DgD~DR~~vvd~~G~~~~~d~~~~l~a~~ll~~~~~~~vV~~v~ss~~ 280 (449)
T PRK14321 203 FV-RELEPN-AKSLSMLAKTVKVLKADVGIAHDGDADRIGVVDDQGNFVEYEVMLSLIAGYMLRKFGKGKIVTTVDAGFA 280 (449)
T ss_pred CC-CCCCCc-hhhHHHHHHHHHHCCCCEEEEecCCCceEEEECCCCCEeChHHHHHHHHHHHHHhCCCCcEEEeccccHH
Confidence 55 469998 7899999999999999999999999999999999999999999999999999987666779999999999
Q ss_pred HHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCCh
Q 029748 82 LTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGI 161 (188)
Q Consensus 82 le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~l 161 (188)
++++|+++|+++++||+|++|+.++|.+.++ ++|+|+|||++|+++.+++|||+++++++ +|++.+ + +|
T Consensus 281 i~~~a~~~g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sGg~~~~~~~~~~Dgi~a~~~il-e~la~~----~-~L 349 (449)
T PRK14321 281 LDDYIRPLGGEVIRTRVGDVAVAEELAKHGG-----VFGGEPSGTWIIPQWNLTPDGIFAGALVL-EMIDRL----G-PI 349 (449)
T ss_pred HHHHHHHcCCEEEEEecChHHHHHHHHhhCC-----EEEecCCCCEEeCCcCCCCCHHHHHHHHH-HHHHcC----C-CH
Confidence 9999999999999999999999999998775 69999999999999999999999999888 777766 7 89
Q ss_pred hhhHHHHhhhhh
Q 029748 162 GMQRQKDLKPLK 173 (188)
Q Consensus 162 s~~~l~~lp~~~ 173 (188)
+++ ++++|+.+
T Consensus 350 s~l-~~~~~~~~ 360 (449)
T PRK14321 350 SEL-AKEVPRYV 360 (449)
T ss_pred HHH-HHhccccc
Confidence 999 98877544
No 12
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=1e-34 Score=262.00 Aligned_cols=167 Identities=19% Similarity=0.159 Sum_probs=147.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC----CCeEEEcCc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP----GTTIVTDAR 77 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~----~~~vv~~v~ 77 (188)
||+++|||+.+++++.+.+ .+.++|+|+++||||||++++|+ |+++++|++++|++++++++.+ +..||+|++
T Consensus 272 ~~~~~p~P~~~~~L~~l~~--~~~~adlGia~DgDgDRl~vvd~-G~~i~~d~~~alla~~ll~~~~~~~~~~~Vv~~v~ 348 (543)
T PRK07564 272 DGKIRMDCSSPYAMAGLLA--LKDAFDLAFANDPDGDRHGIVTP-GGLMNPNHYLAVAIAYLFHHRPGWRAGAGVGKTLV 348 (543)
T ss_pred cCCcCCCCChHHHHHHHHh--hccCCCEEEEECCCCCceeEEec-CeeechhHHHHHHHHHHHHhCcCCCCCceEEEEec
Confidence 5677899997777665554 57789999999999999999999 9999999999999999987532 337999999
Q ss_pred CCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCC-----CCcCCCHHHHHHHHHHHHHHH
Q 029748 78 TSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVVKIIIQMVRM 152 (188)
Q Consensus 78 ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~-----~~~~~Dgi~a~~~ll~em~~~ 152 (188)
||.+++++|+++|+++++|+||++|+.++|.+.+. +||+|+|||++|.. +.+.+|||+++++++ +|++.
T Consensus 349 sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~~-----~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~il-e~la~ 422 (543)
T PRK07564 349 SSAMIDRVAAKLGRKLYEVPVGFKWFVNGLDDGSL-----GFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAA-EILAV 422 (543)
T ss_pred chHHHHHHHHHhCCeeeecchHHHHHHHHHhcCce-----EEEecCcCCeeecccCCCCccccchHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999998654 79999999986643 688999999999877 78777
Q ss_pred HhcCCCCChhhhHHHHhhhhhcCCcccccc
Q 029748 153 KLEGSDEGIGMQRQKDLKPLKNSGNTSRKE 182 (188)
Q Consensus 153 ~~~~~~~~ls~~~l~~lp~~~~~~~~~~~~ 182 (188)
+ +++|+++ +++||++||..+|.|.+
T Consensus 423 ~----~~~L~el-l~~l~~~~g~~~~~~~~ 447 (543)
T PRK07564 423 T----GKSPSEI-YRELWARFGRPYYSRHD 447 (543)
T ss_pred h----CCCHHHH-HHHHHHHhCCceEEEec
Confidence 7 9999999 99999999998888776
No 13
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.5e-34 Score=259.95 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=149.8
Q ss_pred CCCCCCC--------CCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC----
Q 029748 1 MFPNHIP--------NPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---- 68 (188)
Q Consensus 1 ~F~~~~P--------~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~---- 68 (188)
+||.++| ||+.+++++.+.+. ..++|+||++||||||++++|++|+++++|++++|+++++++.++
T Consensus 247 ~f~~~~p~~~~~~~~~p~~~~~l~~l~~~--~~~adlGia~DgDaDRl~vvd~~G~~l~gd~~~aLla~~ll~~~~~~~~ 324 (522)
T cd05801 247 TFRFMTLDHDGKIRMDCSSPYAMAGLLKL--KDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNK 324 (522)
T ss_pred CCCCCCCCcccCCCCCCCCHHHHHHHHHh--hcCCCEEEEECCCccceeEEecCCeEECHHHHHHHHHHHHHHhCcccCC
Confidence 3666555 45556778877775 348999999999999999999999999999999999999998754
Q ss_pred CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCC-----CCcCCCHHHHHH
Q 029748 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~-----~~~~~Dgi~a~~ 143 (188)
+..|+.+++||.+++++|+++|+++++|+||++|+.++|.+... ++|+|+|||++|++ +.+.+|||++++
T Consensus 325 ~~~vv~tv~sS~~l~~ia~~~g~~~~~t~vG~k~i~~~m~~~~~-----~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 399 (522)
T cd05801 325 SAGVGKTLVSSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDGSL-----GFGGEESAGASFLRRDGTVWTTDKDGIIMCL 399 (522)
T ss_pred CceEEEEcchHHHHHHHHHHcCCeeeecCccHHHHHHHHhcCCe-----EEEEeccCceEeccCCCCCcccCchHHHHHH
Confidence 45799999999999999999999999999999999999998654 69999999999987 788999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHHhhhhhcCCcccccc
Q 029748 144 KIIIQMVRMKLEGSDEGIGMQRQKDLKPLKNSGNTSRKE 182 (188)
Q Consensus 144 ~ll~em~~~~~~~~~~~ls~~~l~~lp~~~~~~~~~~~~ 182 (188)
+++ +|++.+ +++|+++ +++||++||..+|.|.+
T Consensus 400 ~~l-e~la~~----~~~L~~~-l~~l~~~~g~~~~~~~~ 432 (522)
T cd05801 400 LAA-EILAVT----GKDPGQL-YQELTERFGEPYYARID 432 (522)
T ss_pred HHH-HHHHHh----CCCHHHH-HHHHHHHHCcCeeeccC
Confidence 877 787777 9999999 99999999988888766
No 14
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=5.9e-34 Score=251.21 Aligned_cols=159 Identities=26% Similarity=0.403 Sum_probs=146.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCH
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 80 (188)
+||+++|+|. ++.++++.+.|++.++|+|+++||||||++++|++|+++++|++++|+++++++. ++..||+|++||+
T Consensus 201 ~f~~~~p~p~-~~~l~~l~~~v~~~~adlgia~D~DgDR~~~vd~~G~~l~~d~~~~l~a~~ll~~-~~~~vv~~v~ss~ 278 (439)
T cd03087 201 FFPGRPPEPT-PENLSELMELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAKYLLEE-GGGKVVTPVDASM 278 (439)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEechHHHHHHHHHHHHhc-CCCcEEEeccchH
Confidence 5899899999 7889999999999999999999999999999999999999999999999999987 5568999999999
Q ss_pred HHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 029748 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (188)
Q Consensus 81 ~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ 160 (188)
+++++|+++|+++++|+||++|++++|.+.+. ++|+|+|||++|+++.+.+|||+++++++ ++++. . +|
T Consensus 279 ~l~~~a~~~g~~~~~~~~G~k~i~~~m~~~~~-----~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e~l~~----~-~~ 347 (439)
T cd03087 279 LVEDVVEEAGGEVIRTPVGDVHVAEEMIENGA-----VFGGEPNGGWIFPDHQLCRDGIMTAALLL-ELLAE----E-KP 347 (439)
T ss_pred HHHHHHHHcCCEEEEEecChHHHHHHHHhcCC-----eEEecCCCCEecCCcCCcCCHHHHHHHHH-HHHhc----C-CC
Confidence 99999999999999999999999999988654 69999999999999999999999999888 66553 2 68
Q ss_pred hhhhHHHHhhhhh
Q 029748 161 IGMQRQKDLKPLK 173 (188)
Q Consensus 161 ls~~~l~~lp~~~ 173 (188)
|+++ ++++|+.+
T Consensus 348 l~~~-~~~~~~~~ 359 (439)
T cd03087 348 LSEL-LDELPKYP 359 (439)
T ss_pred HHHH-HHhccccc
Confidence 9999 99998654
No 15
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=8e-34 Score=250.55 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=145.1
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHH
Q 029748 6 IPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKF 85 (188)
Q Consensus 6 ~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~i 85 (188)
.|+| .+++++.+.+.|++.++|+||++||||||++++|++|+++++|++++|+++++++..+...||.|++||.+++++
T Consensus 209 ~~~~-~~~~l~~l~~~v~~~~adlgia~DgDaDR~~vvd~~G~~~~gd~l~~l~a~~ll~~~~~~~vv~~v~ss~~l~~~ 287 (441)
T cd05805 209 TDTE-RQRSLDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVSLLVLKSEPGGTVVVPVTAPSVIEQL 287 (441)
T ss_pred CCcc-chhHHHHHHHHHHhCCCCEEEEEcCCCCEEEEECCCCCEEChhHHHHHHHHHHHHhCCCCeEEEEccchHHHHHH
Confidence 3555 478999999999999999999999999999999999999999999999999999865556899999999999999
Q ss_pred HHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhH
Q 029748 86 ITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQR 165 (188)
Q Consensus 86 a~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~ 165 (188)
++++|+++++|+||++|++++|.+ ++ +||+|+|||++|+++.+++||++++++++ +|++.+ +++|+++
T Consensus 288 a~~~g~~~~~t~vG~~~i~~~m~~-~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~~----~~~l~~l- 355 (441)
T cd05805 288 AERYGGRVIRTKTSPQALMEAALE-NV-----VLAGDGDGGFIFPEFHPGFDAIAALVKIL-EMLART----NISLSQI- 355 (441)
T ss_pred HHHcCCEEEEEeCChHHHHHHHHh-cc-----cccccCCCcEEccccccCchHHHHHHHHH-HHHHhc----CCCHHHH-
Confidence 999999999999999999999998 44 69999999999999999999999999877 787777 9999999
Q ss_pred HHHhhhhhcCC
Q 029748 166 QKDLKPLKNSG 176 (188)
Q Consensus 166 l~~lp~~~~~~ 176 (188)
++++|+.++..
T Consensus 356 ~~~l~~~~~~~ 366 (441)
T cd05805 356 VDELPRFYVLH 366 (441)
T ss_pred HHhCchhheee
Confidence 99999887654
No 16
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-33 Score=250.90 Aligned_cols=163 Identities=29% Similarity=0.436 Sum_probs=149.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCH
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 80 (188)
+||+++|||++++.+ .+.+.+++.++|+|+++||||||++++|++|+++++|++++|++.++++......||.|++||.
T Consensus 215 ~fp~~~p~p~~~~~~-~l~~~v~~~~aDlgia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~l~~~~~~~~vV~tv~ss~ 293 (464)
T COG1109 215 LFPNINPNPGETELL-DLAKAVKEHGADLGIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGKLPTVVTTVMSSL 293 (464)
T ss_pred CCCCCCCCCCCccHH-HHHHHHHhcCCCEEEEecCCCceEEEEcCCCCEeCccHHHHHHHHHHHhcCCCCeEEEecccch
Confidence 599988999976655 8888888889999999999999999999999999999999999999999643338999999999
Q ss_pred HHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 029748 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (188)
Q Consensus 81 ~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ 160 (188)
+++++++.+|+++++|+||++|+.++|++..+ +||+|+|||++|+.+..++||++++++++ +|++++ +++
T Consensus 294 ~~~~i~~~~g~~~~~t~vG~~~i~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~aal~il-el~~~~----~~~ 363 (464)
T COG1109 294 ALEKIAKKLGGKVVRTKVGDKYIAEKMRENGA-----VFGGEESGHIIFPDHVRTGDGLLAALLVL-ELLAES----GKS 363 (464)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHhcCC-----eEEEcccCCEEECCCCcCCcHHHHHHHHH-HHHHHh----CCC
Confidence 99999999999999999999999999999888 59999999999999999999999999777 888887 789
Q ss_pred hhhhHHHH-hhhhhcC
Q 029748 161 IGMQRQKD-LKPLKNS 175 (188)
Q Consensus 161 ls~~~l~~-lp~~~~~ 175 (188)
++++ +.. +|+.+++
T Consensus 364 lsel-~~~~~~~~~~~ 378 (464)
T COG1109 364 LSEL-LAELLPKYPQS 378 (464)
T ss_pred HHHH-HHhhccccCCc
Confidence 9999 888 8887764
No 17
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2e-33 Score=248.38 Aligned_cols=148 Identities=22% Similarity=0.282 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC--CCCeEEEcCcCCHHHHHHHHHcC
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~--~~~~vv~~v~ss~~le~ia~~~g 90 (188)
.+++.+.+.|++.+||+|+++||||||+.++|++|+++++|++++|+++++++.+ ++..||+|++||.+++++|+++|
T Consensus 221 ~~~e~l~~~v~~~~adlGia~DgDgDR~~vvd~~G~~l~~d~~~~l~a~~ll~~~~~~~~~VV~~v~ss~~l~~ia~~~g 300 (446)
T PRK14324 221 LHPENLAQEVKRYRADIGFAFDGDADRLVVVDEKGEIVHGDKLLGVLAVYLKEKGALKSQAIVATVMSNLALEEYLKKHG 300 (446)
T ss_pred CCHHHHHHHHHhCCCCEEEEECCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHcC
Confidence 3466788999999999999999999999999999999999999999999999875 45689999999999999999999
Q ss_pred CcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhh
Q 029748 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLK 170 (188)
Q Consensus 91 ~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp 170 (188)
+++++||||++|+.++|.+.++ +||+|+|||++|+++.+++|||+++++++ ++++.. +++|+++ ++++|
T Consensus 301 ~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~~----~~~ls~l-~~~~~ 369 (446)
T PRK14324 301 IELKRCNVGDKYVLECMKENGI-----NFGGEQSGHIIFSDYAKTGDGLVSALQVS-ALMLES----KKKASEA-LNPFE 369 (446)
T ss_pred CeEEEeCChHHHHHHHHHhcCC-----EEEEcCcccEEecCcCCCCcHHHHHHHHH-HHHHHc----CCCHHHH-HHhhh
Confidence 9999999999999999998765 69999999999999999999999999888 677776 9999999 99988
Q ss_pred h
Q 029748 171 P 171 (188)
Q Consensus 171 ~ 171 (188)
.
T Consensus 370 ~ 370 (446)
T PRK14324 370 L 370 (446)
T ss_pred h
Confidence 5
No 18
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=1.7e-33 Score=255.08 Aligned_cols=172 Identities=15% Similarity=0.086 Sum_probs=145.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHH-------HhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC----CC
Q 029748 1 MFPNHIPNPEDKTAMALTRAAV-------LENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH----PG 69 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v-------~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~----~~ 69 (188)
+||+++|||+. ..+.++...+ .+.++|+|+++||||||++++ ++|.++.++.++++++.+++... ++
T Consensus 263 ~Fp~~~PnP~~-~~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~vv-~~g~~i~~d~~l~ll~~~~l~~~~~~~~g 340 (579)
T PLN02307 263 DFGGGHPDPNL-TYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMIL-GKRFFVTPSDSVAIIAANAQEAIPYFSGG 340 (579)
T ss_pred CCCCCCCCCCH-HHHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEEE-ecCcEEcCChHHHHHHHHHHHhhhhhhcC
Confidence 59999999984 4444444333 345699999999999999999 77899999999999998887652 22
Q ss_pred C-eEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHH
Q 029748 70 T-TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (188)
Q Consensus 70 ~-~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~e 148 (188)
. .||.+++||.+++++|+++|+++++|+||||||.++|.+.+ ++||||||||++ +++.+++|||+++++++ +
T Consensus 341 ~~~VV~tv~sS~~l~~ia~~~G~~~~~t~vGfk~I~~~m~e~~-----~~~GgEeSgG~~-~~~~~dkDGi~aallll-e 413 (579)
T PLN02307 341 LKGVARSMPTSAALDVVAKKLNLPFFEVPTGWKFFGNLMDAGK-----LSICGEESFGTG-SDHIREKDGIWAVLAWL-S 413 (579)
T ss_pred CcEEEEeChhhHHHHHHHHHcCCeEEEcCchHHHHHHHHHhCC-----cEEEEcccCCCC-CCCCCCCcHHHHHHHHH-H
Confidence 2 69999999999999999999999999999999999999864 479999999984 99999999999998766 8
Q ss_pred HHHHHhcCC----CC--ChhhhHHHHhhhhhcCCccccccc
Q 029748 149 MVRMKLEGS----DE--GIGMQRQKDLKPLKNSGNTSRKEG 183 (188)
Q Consensus 149 m~~~~~~~~----~~--~ls~~~l~~lp~~~~~~~~~~~~~ 183 (188)
|++++ ..+ ++ ||+++ +++|+++||..+|+|.+-
T Consensus 414 l~a~~-~~~~~~~~~~~tl~~~-l~el~~~~G~~~~~~~~~ 452 (579)
T PLN02307 414 ILAHK-NKDVLPGGKLVTVEDI-VREHWATYGRNFYSRYDY 452 (579)
T ss_pred HHHHh-CCCcccccCcCCHHHH-HHHHHHHhCCCeeeecce
Confidence 88876 322 33 78999 999999999999999875
No 19
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.4e-33 Score=247.68 Aligned_cols=150 Identities=26% Similarity=0.298 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC-CCeEEEcCcCCHHHHHHHHHcC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~-~~~vv~~v~ss~~le~ia~~~g 90 (188)
+.+++++.+.|++.++|+|+++||||||+.++|++|+++++|++++|++.++++.++ ...||.|++||.+++++|+++|
T Consensus 216 ~~~l~~l~~~v~~~~adlGia~D~DgDRl~~vd~~G~~i~~d~l~~l~~~~ll~~~~~~~~vv~~v~ss~~~~~~a~~~g 295 (443)
T PRK10887 216 ATDPEALQAAVLAEKADLGIAFDGDGDRVIMVDHLGNLVDGDQLLYIIARDRLRRGQLRGGVVGTLMSNMGLELALKQLG 295 (443)
T ss_pred CCCHHHHHHHHHhcCCCeeeEECCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhCCCCCcEEEEeccchHHHHHHHHcC
Confidence 457899999999999999999999999999999999999999999999999998764 4579999999999999999999
Q ss_pred CcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhh
Q 029748 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLK 170 (188)
Q Consensus 91 ~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp 170 (188)
+++++||||++|+.++|.+.++ ++|+|+|||++|+++.+.+|||+++++++ +|++.. +++|+++ ++++|
T Consensus 296 ~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~~----~~~Ls~l-~~~~~ 364 (443)
T PRK10887 296 IPFVRAKVGDRYVLEKLQEKGW-----RLGGENSGHILCLDKTTTGDGIVAALQVL-AAMVRS----GMSLADL-CSGMK 364 (443)
T ss_pred CcEEEcCCchHHHHHHHHhcCc-----EEEEecccceeccCccccCcHHHHHHHHH-HHHHHh----CCCHHHH-Hhhcc
Confidence 9999999999999999988765 69999999999999999999999999888 777776 8999999 99998
Q ss_pred hh
Q 029748 171 PL 172 (188)
Q Consensus 171 ~~ 172 (188)
..
T Consensus 365 ~~ 366 (443)
T PRK10887 365 LF 366 (443)
T ss_pred cc
Confidence 54
No 20
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.4e-33 Score=247.04 Aligned_cols=151 Identities=27% Similarity=0.366 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC--CCCeEEEcCcCCHHHHHHHHHc
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~--~~~~vv~~v~ss~~le~ia~~~ 89 (188)
+.+++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||+|++||.+++++|+++
T Consensus 221 ~~~l~~l~~~v~~~~adlGia~DgDgDR~~ivd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~i~~~a~~~ 300 (448)
T PRK14315 221 STHPEALAKKVREVRADIGIALDGDADRVIIVDEKGHVVDGDQLMALIAESWAEDGRLRGGGIVATVMSNLGLERFLADR 300 (448)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCceEEEEcCCCcEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHc
Confidence 35688899999999999999999999999999999999999999999999999865 4568999999999999999999
Q ss_pred CCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHh
Q 029748 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDL 169 (188)
Q Consensus 90 g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~l 169 (188)
|+++++||||++|+.++|.+.++ ++|+|+|||++|+++.+.+|||+++++++ ++++.. +++|+++ ++++
T Consensus 301 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~f~~~~~~~Dgi~a~l~ll-e~la~~----~~~L~~l-~~~~ 369 (448)
T PRK14315 301 GLTLERTAVGDRYVVEHMREGGF-----NLGGEQSGHIVLSDYATTGDGLVAALQVL-AVVVRS----GRPASEV-CRRF 369 (448)
T ss_pred CCeEEEeCChHHHHHHHHHhCCC-----ceeecccccEeecccCCCCcHHHHHHHHH-HHHHHh----CCCHHHH-hhhc
Confidence 99999999999999999998665 69999999999999999999999999888 777776 8999999 9998
Q ss_pred hhhh
Q 029748 170 KPLK 173 (188)
Q Consensus 170 p~~~ 173 (188)
|..+
T Consensus 370 ~~~~ 373 (448)
T PRK14315 370 EPVP 373 (448)
T ss_pred CcCC
Confidence 8543
No 21
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=6.9e-33 Score=250.19 Aligned_cols=169 Identities=19% Similarity=0.215 Sum_probs=144.4
Q ss_pred CCCCCCCCCC--------ChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC---C
Q 029748 1 MFPNHIPNPE--------DKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---G 69 (188)
Q Consensus 1 ~F~~~~P~P~--------~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~---~ 69 (188)
+||+++|+|+ .++.++.+.+ ++.++|+||++||||||++++|++| ++++|++++|+++++++.++ +
T Consensus 264 ~f~~~~pd~~~~~~~~~~~~e~l~~l~~--~~~~aDlGia~DgDaDR~~vvd~~g-~i~gd~~~aLla~~ll~~~~~~~~ 340 (543)
T TIGR01132 264 TFRFMTLDKDGKIRMDCSSPYAMAGLLA--LRDKYDLAFGNDPDYDRHGIVTPAG-LMNPNHYLAVAINYLFQHRPQWGG 340 (543)
T ss_pred CCCCCCCCcccccCCCCCCHHHHHHHhh--cccCCCEEEEeCCCCCCeeEEecCc-eeCHHHHHHHHHHHHHHhCcccCC
Confidence 3776666422 2355555554 5889999999999999999999985 69999999999999998753 3
Q ss_pred -CeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCC-----CCcCCCHHHHHH
Q 029748 70 -TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (188)
Q Consensus 70 -~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~-----~~~~~Dgi~a~~ 143 (188)
..|+++++||.+++++|+++|+++++|+||++|+.++|.+.+. +||+|+|||++|+. +.+++|||++++
T Consensus 341 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~~-----~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 415 (543)
T TIGR01132 341 DVAVGKTLVSSAMIDRVVADLGRQLVEVPVGFKWFVDGLFDGSF-----GFGGEESAGASFLRFDGTPWSTDKDGIIMCL 415 (543)
T ss_pred CceEEEEeccHHHHHHHHHHcCCceeecCccHHHHHHHHhcCCe-----EEEEeccCceEecccCCCCcccCcHHHHHHH
Confidence 3688899999999999999999999999999999999998654 79999999999955 788999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHHhhhhhcCCccccccc
Q 029748 144 KIIIQMVRMKLEGSDEGIGMQRQKDLKPLKNSGNTSRKEG 183 (188)
Q Consensus 144 ~ll~em~~~~~~~~~~~ls~~~l~~lp~~~~~~~~~~~~~ 183 (188)
+++ +|++.+ ++||+++ ++++|+++|..+|.|++.
T Consensus 416 ~il-e~la~~----~~~L~~l-l~~lp~~~~~~~~~~~~~ 449 (543)
T TIGR01132 416 LAA-EITAVT----GKNPQQH-YNELAAKFGAPSYNRIQA 449 (543)
T ss_pred HHH-HHHHHh----CCCHHHH-HHHHHHHhCCceEEEEec
Confidence 877 787777 9999999 999999999998877653
No 22
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.5e-32 Score=242.02 Aligned_cols=151 Identities=28% Similarity=0.412 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC--CCCeEEEcCcCCHHHHHHHHHc
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~--~~~~vv~~v~ss~~le~ia~~~ 89 (188)
+++++.+.+.|++.++|+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++++++
T Consensus 214 ~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vv~~v~ss~~~~~~~~~~ 293 (434)
T cd05802 214 STHPESLQKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKEL 293 (434)
T ss_pred ccCHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEecCCcHHHHHHHHHc
Confidence 35688899999999999999999999999999999999999999999999999875 4568999999999999999999
Q ss_pred CCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHh
Q 029748 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDL 169 (188)
Q Consensus 90 g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~l 169 (188)
|+++++||||++|+.++|.+.++ ++|+|+|||++|+++++.+|||+++++++ +|++.+ +++|+++ ++++
T Consensus 294 g~~v~~~~~G~~~i~~~~~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~la~~----~~~ls~l-~~~l 362 (434)
T cd05802 294 GIKLVRTKVGDRYVLEEMLKHGA-----NLGGEQSGHIIFLDHSTTGDGLLTALQLL-AIMKRS----GKSLSEL-ASDM 362 (434)
T ss_pred CCeEEEEcChHHHHHHHHHhcCC-----EEEEecCCCEEecCcCCCCcHHHHHHHHH-HHHHHh----CCCHHHH-Hhhc
Confidence 99999999999999999998775 69999999999999999999999999888 777777 9999999 9999
Q ss_pred hhhh
Q 029748 170 KPLK 173 (188)
Q Consensus 170 p~~~ 173 (188)
|..+
T Consensus 363 ~~~~ 366 (434)
T cd05802 363 KLYP 366 (434)
T ss_pred cccC
Confidence 7433
No 23
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.5e-32 Score=244.00 Aligned_cols=156 Identities=24% Similarity=0.314 Sum_probs=142.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC--CCCeEEEcCcCCHHHHH
Q 029748 7 PNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTK 84 (188)
Q Consensus 7 P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~--~~~~vv~~v~ss~~le~ 84 (188)
|+|. +++++.+.+.|++.+||+|+++||||||+.++|++|+++++|++++|+++++++.. ++..||.|++||..+++
T Consensus 229 ~~~~-~~~l~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~l~~l~a~~ll~~~~~~~~~VV~~v~ss~~~~~ 307 (465)
T PRK14317 229 VNCG-STHLEPLQAAVLEHGADMGFAFDGDADRVLAVDGQGRVVDGDHILYLWGSHLQEQNQLPDNLLVATVMSNLGFER 307 (465)
T ss_pred CCCc-hHhHHHHHHHHHhcCCCEEEEECCCCcEEEEECCCCCEEChhHHHHHHHHHHHHhcCCCCCeEEEeeecchHHHH
Confidence 3444 46799999999999999999999999999999999999999999999999999863 44689999999999999
Q ss_pred HHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhh
Q 029748 85 FITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQ 164 (188)
Q Consensus 85 ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~ 164 (188)
+++++|+++++||||++|+.++|.+.++ +||+|+|||++|+++.+++|||+++++++ ++++.. +++|+++
T Consensus 308 ~~~~~g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~~----~~~lsel 377 (465)
T PRK14317 308 AWQQRGGQLERTAVGDQHVHAAMLETGA-----MLGGEQSGHILCHHHGLSGDGLLTALHLA-TLVHQS----GVSLAEL 377 (465)
T ss_pred HHHHcCCeEEEcCCchHHHHHHHHHcCc-----EeeccccceEEEeccccCCcHHHHHHHHH-HHHHHh----CCCHHHH
Confidence 9999999999999999999999998775 69999999999999999999999999887 777776 9999999
Q ss_pred HHHHhhhhhc
Q 029748 165 RQKDLKPLKN 174 (188)
Q Consensus 165 ~l~~lp~~~~ 174 (188)
++++++.+.
T Consensus 378 -~~~~~~~~p 386 (465)
T PRK14317 378 -VDQSFQTYP 386 (465)
T ss_pred -HHhHHHhCC
Confidence 999866554
No 24
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=1.9e-32 Score=241.93 Aligned_cols=151 Identities=24% Similarity=0.363 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC--CCCeEEEcCcCCHHHHHHHHHc
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~--~~~~vv~~v~ss~~le~ia~~~ 89 (188)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++|+++
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~al~a~~ll~~~~~~~~~vv~~v~ss~~l~~~a~~~ 296 (443)
T TIGR01455 217 STHLDALQKAVREHGADLGIAFDGDADRVLAVDANGRIVDGDQILYIIARALKESGELAGNTVVATVMSNLGLERALEKL 296 (443)
T ss_pred CCCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEccCCHHHHHHHHHc
Confidence 35688999999999999999999999999999999999999999999999999873 3457999999999999999999
Q ss_pred CCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHh
Q 029748 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDL 169 (188)
Q Consensus 90 g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~l 169 (188)
|+++++||||++|+.++|.+.++ ++|+|+|||++|+++.+.+|||+++++++ ++++.+ +++|+++ ++++
T Consensus 297 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~~----~~~l~~l-~~~~ 365 (443)
T TIGR01455 297 GLTLIRTAVGDRYVLEEMRESGY-----NLGGEQSGHIILLDYSTTGDGIVSALQVL-TIMKKS----GSTLSEL-AAEF 365 (443)
T ss_pred CCeEEEeCChHHHHHHHHHhcCC-----EEEEcCcceEEecCCCcCCcHHHHHHHHH-HHHHHh----CCCHHHH-Hhhc
Confidence 99999999999999999998765 69999999999999999999999999888 777766 8999999 9998
Q ss_pred hhhh
Q 029748 170 KPLK 173 (188)
Q Consensus 170 p~~~ 173 (188)
|..+
T Consensus 366 ~~~~ 369 (443)
T TIGR01455 366 VPYP 369 (443)
T ss_pred cccC
Confidence 8644
No 25
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=245.07 Aligned_cols=174 Identities=31% Similarity=0.354 Sum_probs=160.3
Q ss_pred CCCC-CCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcC---CCccccchhHHHHHHHHHHHhCCCCeE----
Q 029748 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN---KGNPINGDKLIALMSAIVLKEHPGTTI---- 72 (188)
Q Consensus 1 ~F~~-~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~---~G~~i~~d~~~~l~~~~~l~~~~~~~v---- 72 (188)
+||+ ++||||++.+|+...+.+.++++|+++++|||+||+.+++. +|+.++||++++|++.++++.+++..+
T Consensus 287 ~FPt~~~PNPEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~~k~~~~~~~~ 366 (607)
T KOG1220|consen 287 MFPTVPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHKGSTPVQDV 366 (607)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHhccCCcEEEecCCCcchhhheeccCCcceeccchHHHHHHHHHHHHhccCCCccchh
Confidence 5999 99999999999999999999999999999999999999987 899999999999999999999886443
Q ss_pred --EEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHH
Q 029748 73 --VTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMV 150 (188)
Q Consensus 73 --v~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~ 150 (188)
.-+.+||.++..||++.|++.++|.+||||+++++.+..++|+++.|++||++|++|+.+.+.+||++++++++ .|+
T Consensus 367 ~ml~s~vSs~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a-~~~ 445 (607)
T KOG1220|consen 367 SMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFA-SMA 445 (607)
T ss_pred hhhhhHHHHHHHHHHHHHhCceeeeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHHH-HHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999887 677
Q ss_pred HHHhcCCCCChhhhHHHHhhhhhcCC
Q 029748 151 RMKLEGSDEGIGMQRQKDLKPLKNSG 176 (188)
Q Consensus 151 ~~~~~~~~~~ls~~~l~~lp~~~~~~ 176 (188)
++.....+.||++. +.+++++||+.
T Consensus 446 ~~lr~~~~~sl~e~-l~~l~e~yg~~ 470 (607)
T KOG1220|consen 446 CRLRLAGNLSLSEV-LEDLYERYGYH 470 (607)
T ss_pred HHHHHhcCCCHHHH-HHHHHHhhCcc
Confidence 76534447899999 99999999875
No 26
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.2e-32 Score=241.02 Aligned_cols=147 Identities=27% Similarity=0.372 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC--CCCeEEEcCcCCHHHHHHHHHcC
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~--~~~~vv~~v~ss~~le~ia~~~g 90 (188)
.+++++.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||+|++||++++++|+++|
T Consensus 223 ~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~al~~~~ll~~~~~~~~~vv~~v~ss~~~~~ia~~~g 302 (450)
T PRK14314 223 LHPEVIAKAVIEHGADLGIALDGDADRLIVVDEKGHIVDGDQIMAICATDLKKRGALPKNTLVATVMSNMGLEVAMKELG 302 (450)
T ss_pred CCHHHHHHHHHhcCCCeEEEEcCCCceEEEECCCCcCcCHHHHHHHHHHHHHHhcCCCCCEEEEeccCChHHHHHHHHcC
Confidence 4567789999999999999999999999999999999999999999999999873 45679999999999999999999
Q ss_pred CcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhh
Q 029748 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLK 170 (188)
Q Consensus 91 ~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp 170 (188)
++|++||||++|+.++|.+.++ ++|+|+|||++|+++.+.+|||+++++++ ++++.. +++|+++ ++++|
T Consensus 303 ~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~~----~~~Ls~l-~~~~~ 371 (450)
T PRK14314 303 GQVLRTPVGDRYVVEEMRRGGA-----NLGGEQSGHLIFLDHNTTGDGILSALQVL-RIMIES----GKPLSEL-AGLLE 371 (450)
T ss_pred CEEEEeCChHHHHHHHHHhcCC-----EEEEeCcccEEEeCCCCCCcHHHHHHHHH-HHHHHh----CCCHHHH-Hhhhh
Confidence 9999999999999999998775 69999999999999999999999999888 777777 9999999 98544
No 27
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.2e-32 Score=240.02 Aligned_cols=147 Identities=26% Similarity=0.362 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC--CCCeEEEcCcCCHHHHHHHHHcC
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~--~~~~vv~~v~ss~~le~ia~~~g 90 (188)
+.++.+.+.|++.++|+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|+.||.+++++++++|
T Consensus 219 ~~~~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vv~~v~ss~~~~~~~~~~g 298 (448)
T PRK14316 219 THPEALQELVVEKGADLGLAFDGDADRLIAVDENGNIVDGDKIMFICGKYLKEKGRLKKNTIVTTVMSNLGFYKALEEEG 298 (448)
T ss_pred CCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEeccCchHHHHHHHHcC
Confidence 4466789999999999999999999999999999999999999999999999875 44579999999999999999999
Q ss_pred CcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhh
Q 029748 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLK 170 (188)
Q Consensus 91 ~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp 170 (188)
+++++||||++|+.++|.+.++ ++|+|+|||++|+++.+.+|||+++++++ +|++.. +++|+++ ++++|
T Consensus 299 ~~v~~~~vG~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~il-e~l~~~----~~~ls~l-~~~~~ 367 (448)
T PRK14316 299 INSVKTKVGDRYVVEEMRKGGY-----NLGGEQSGHIIFLDYNTTGDGLLTALQLA-KVMKET----GKKLSEL-AAEMK 367 (448)
T ss_pred CeEEEeCChHHHHHHHHHhcCC-----eEEEcCcccEEecccCCCCcHHHHHHHHH-HHHHHh----CCCHHHH-Hhhhh
Confidence 9999999999999999998765 69999999999999999999999999888 777766 9999999 99884
No 28
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.98 E-value=2e-31 Score=234.71 Aligned_cols=148 Identities=23% Similarity=0.332 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC--CCeEEEcCcCCHHHHHHHHHcC
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~--~~~vv~~v~ss~~le~ia~~~g 90 (188)
..++.+.+.+ .++|+|+++||||||+.++|++|+++++|++++|++.++++.++ +..||.|+.||.+++++++++|
T Consensus 208 ~~~~~l~~~v--~~~dlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~~~~~~~~~g 285 (430)
T PRK14319 208 THPENAKEKI--TNHKIAILHDGDGDRCIFLDEKGQEFHGDKIIGLTAKHLKKEGRLKNDVVVGTILSNMGLEVFLKNNG 285 (430)
T ss_pred CCHHHHHHHH--HhcCEEEEEcCCCceEEEECCCCCEeChhHHHHHHHHHHHHhCCCCCCeEEEeecCchHHHHHHHHCC
Confidence 4566667766 35699999999999999999999999999999999999988642 3469999999999999999999
Q ss_pred CcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhh
Q 029748 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLK 170 (188)
Q Consensus 91 ~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp 170 (188)
+++++||||++|+.++|.+.++ ++|+|+|||++|+++.+++|||+++++++ ++++.+ +++|+++ ++++|
T Consensus 286 ~~v~~t~~G~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~l~~~----~~~ls~l-~~~~p 354 (430)
T PRK14319 286 IKVVRTKVGDRYVLEEMLKLNA-----TLGGERSGHIIYLDKSTTGDGLITALETL-SVMVKS----GKKLSDL-SNEIP 354 (430)
T ss_pred CcEEEeCCchHHHHHHHHHcCC-----EEEEcccceEEEhhccCCCcHHHHHHHHH-HHHHHh----CCCHHHH-Hhhcc
Confidence 9999999999999999998876 59999999999999999999999999888 677776 9999999 99988
Q ss_pred hhh
Q 029748 171 PLK 173 (188)
Q Consensus 171 ~~~ 173 (188)
..+
T Consensus 355 ~~~ 357 (430)
T PRK14319 355 DYP 357 (430)
T ss_pred ccc
Confidence 544
No 29
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.98 E-value=2.9e-31 Score=233.60 Aligned_cols=149 Identities=23% Similarity=0.345 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC--CCeEEEcCcCCHHHHHHHHHc
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~--~~~vv~~v~ss~~le~ia~~~ 89 (188)
+++++.+.+.|+ ++|+|+++||||||+.++|++|+++++|++++|++.++++..+ ...||.|++||++++++++++
T Consensus 210 ~~~l~~l~~~v~--~~dlGia~DgD~DR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~l~~~a~~~ 287 (429)
T PRK14322 210 ATHPRFLAEEMK--NGKVGFTFDGDGDRVIAVDEERNVVNGDRIIGILAVGLKEEGRLNSDTVVGTVMTNGGLEDFLKER 287 (429)
T ss_pred cCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCcEEChHHHHHHHHHHHHHhcCCCCCeEEEeecCchHHHHHHHHc
Confidence 356777888877 5699999999999999999999999999999999999998752 248999999999999999999
Q ss_pred CCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHh
Q 029748 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDL 169 (188)
Q Consensus 90 g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~l 169 (188)
|+++++||||++|+.++|.+.+. ++|+|+|||++|+++++.+|||+++++++ ++++.. +++|+++ ++++
T Consensus 288 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~~----~~~Ls~l-~~~l 356 (429)
T PRK14322 288 GIKLLRTKVGDKYVLEKMLESGA-----NLGGERSGHIIILDRSTTGDGLITALELM-RVLKRS----GRNLSDF-AKEI 356 (429)
T ss_pred CCeEEEeCCccHHHHHHHhhcCc-----ceeccCCceEEecCCCCCCcHHHHHHHHH-HHHHHh----CCCHHHH-Hhhc
Confidence 99999999999999999998775 59999999999999999999999999888 676666 9999999 9999
Q ss_pred hhhh
Q 029748 170 KPLK 173 (188)
Q Consensus 170 p~~~ 173 (188)
|..+
T Consensus 357 p~~~ 360 (429)
T PRK14322 357 PDYP 360 (429)
T ss_pred hhcC
Confidence 8554
No 30
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=3.1e-31 Score=234.11 Aligned_cols=146 Identities=25% Similarity=0.253 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
+++++++.+.|++.++|+|+++||||||++++|++|+++++|++++|++++.. + ..||.|+.||.+++++++++|+
T Consensus 218 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vD~~G~~i~~d~~~~l~a~~~~---~-~~vV~~v~ss~~~~~~~~~~g~ 293 (440)
T PRK14323 218 STHPEALQRFVVEGGLDLGVAFDGDADRALFVDRRGRLFHGDHMLYLNALARG---E-KAVVGTVMSNMALEVKLREAGI 293 (440)
T ss_pred CCCHHHHHHHHhccCCCEEEEeCCCcceeEEECCCCcEeCHHHHHHHHHHHhc---C-CcEEEEeCCChHHHHHHHHcCC
Confidence 46788999999999999999999999999999999999999999999997641 2 3799999999999999999999
Q ss_pred cEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhh
Q 029748 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLKP 171 (188)
Q Consensus 92 ~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp~ 171 (188)
++++||||++|+.++|.+.++ ++|+|+|||++|+++.+++|||+++++++ ++++.+ +++|+++ ++++|.
T Consensus 294 ~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~~l-e~la~~----~~~ls~l-~~~~~~ 362 (440)
T PRK14323 294 AFHRTAVGDRYVHEKLHAKGL-----TLGGEQSGHVLFLDHAPTGDGVLTALLTL-AAMKAL----GTDLDAW-YDALPM 362 (440)
T ss_pred eEEEeCChHHHHHHHHHhcCC-----eEEEcCcccEEeCCCCCCCcHHHHHHHHH-HHHHHh----CCCHHHH-HHhhhh
Confidence 999999999999999998775 69999999999999999999999999888 777777 9999999 999986
Q ss_pred h
Q 029748 172 L 172 (188)
Q Consensus 172 ~ 172 (188)
.
T Consensus 363 ~ 363 (440)
T PRK14323 363 Y 363 (440)
T ss_pred c
Confidence 3
No 31
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=8e-31 Score=231.97 Aligned_cols=148 Identities=23% Similarity=0.331 Sum_probs=134.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC--CCeEEEcCcCCHHHHHHHHHc
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~--~~~vv~~v~ss~~le~ia~~~ 89 (188)
+++++.+.+.|++.++|+|+++||||||+.++|++|+++++|++++|++.++++..+ ...||.|++||.+++++++++
T Consensus 220 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~~~~~~~~~ 299 (448)
T PRK14318 220 STHLEQLQAAVVAHGADLGLAHDGDADRCLAVDANGNVVDGDQIMAILALAMKEAGELASDTLVATVMSNLGLKLAMREA 299 (448)
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEecCchHHHHHHHHc
Confidence 467899999999999999999999999999999999999999999999988877642 357999999999999999999
Q ss_pred CCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHh
Q 029748 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDL 169 (188)
Q Consensus 90 g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~l 169 (188)
|+++++||+|++|+.++|.+.++ ++|+|+|||++|+++.+.+|||+++++++ ++++.. +++|+++ ++++
T Consensus 300 g~~v~~t~vG~~~i~~~~~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~~----~~~ls~l-~~~~ 368 (448)
T PRK14318 300 GITVVTTAVGDRYVLEEMRAGGY-----SLGGEQSGHIVMPDHATTGDGILTGLRLM-ARMAQT----GKSLAEL-ASAM 368 (448)
T ss_pred CCcEEEeCChHHHHHHHHHhcCc-----EEEEcCcCcEEecCCCCCCCHHHHHHHHH-HHHHHh----CCCHHHH-Hhhh
Confidence 99999999999999999997665 69999999999999999999999999888 666666 8999999 9754
Q ss_pred h
Q 029748 170 K 170 (188)
Q Consensus 170 p 170 (188)
|
T Consensus 369 ~ 369 (448)
T PRK14318 369 T 369 (448)
T ss_pred h
Confidence 4
No 32
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=1.7e-30 Score=229.65 Aligned_cols=145 Identities=23% Similarity=0.290 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
+++++.+.+.|++.++|+|+++||||||++++|++|+++++|++++|+++++++..+...||.++.||.+++++++++|+
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~l~gd~~~al~a~~l~~~~~~~~vV~~~~~s~~~~~~~~~~g~ 296 (443)
T PRK14320 217 ATCVSNIKKAVKEQKADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDICGGTNGIVGTQMTNMSYENHYRANKI 296 (443)
T ss_pred hHhHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCcccCHHHHHHHHHHHHHHhCCCCCEEEecCCcHHHHHHHHHCCC
Confidence 47799999999999999999999999999999999999999999999999988754334688899999999999999999
Q ss_pred cEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHH
Q 029748 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQK 167 (188)
Q Consensus 92 ~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~ 167 (188)
++++||||++++.++|.+.++ ++|+|+|||++|+++.+++|||++++++| ++++.+ +++|+++ +.
T Consensus 297 ~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~~~ll-e~la~~----~~~ls~l-~~ 361 (443)
T PRK14320 297 PFIRSKVGDRYVLEDLVKYGY-----KIGGESSGHVINLNFGTTGDGLFTAIQLL-AIFSQA----DKPVSEF-KL 361 (443)
T ss_pred CEEEecCchHHHHHHHHhCCC-----cEeecCCccEEccCCCCcCCHHHHHHHHH-HHHHHc----CCCHHHH-hc
Confidence 999999999999999998775 59999999999999999999999999888 777776 9999999 84
No 33
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.97 E-value=6.4e-31 Score=233.25 Aligned_cols=162 Identities=20% Similarity=0.107 Sum_probs=141.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHH
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMA 81 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~ 81 (188)
|+..+|+|..+++++++.+.|++.+||+||++||||||+.++|++|+++++|++++|+++++. ...|++|++||.+
T Consensus 201 ~~~~~~~~~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~i~~d~l~~l~~~~~~----~~~Vv~~v~ss~~ 276 (459)
T cd03088 201 FIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTDGDGDRPLVADETGEWLRGDILGLLTARFLG----ADTVVTPVSSNSA 276 (459)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCceeECCCCCEECchHHHHHHHHHhC----CCEEEEccCCcHH
Confidence 555556666568899999999999999999999999999999999999999999999998863 2479999999999
Q ss_pred HHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCC----------CCcCCCHHHHHHHHHHHHHH
Q 029748 82 LTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE----------NYFLDDGAYMVVKIIIQMVR 151 (188)
Q Consensus 82 le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~----------~~~~~Dgi~a~~~ll~em~~ 151 (188)
+++++. ++++++||||++|++++|.+....+.++++|+|+|||++|++ +.+.+|||+++++++ ++++
T Consensus 277 i~~~~~--~~~~~~t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~il-e~l~ 353 (459)
T cd03088 277 IELSGF--FKRVVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVL-AAAK 353 (459)
T ss_pred HHHcCC--ceeEEECCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHH-HHHH
Confidence 988875 589999999999999999975444445689999999999985 567899999999888 7777
Q ss_pred HHhcCCCCChhhhHHHHhhhhhcC
Q 029748 152 MKLEGSDEGIGMQRQKDLKPLKNS 175 (188)
Q Consensus 152 ~~~~~~~~~ls~~~l~~lp~~~~~ 175 (188)
.+ +++|+++ ++++|++|+.
T Consensus 354 ~~----~~~Ls~l-l~~l~~~~~~ 372 (459)
T cd03088 354 EA----GIPLSEL-VASLPARFTA 372 (459)
T ss_pred hc----CCCHHHH-HHHHhhcceE
Confidence 66 9999999 9999999985
No 34
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.95 E-value=2.1e-27 Score=173.65 Aligned_cols=112 Identities=27% Similarity=0.404 Sum_probs=100.7
Q ss_pred cchhHHHHHHHHHHHhCC-CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeec
Q 029748 51 NGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGAL 129 (188)
Q Consensus 51 ~~d~~~~l~~~~~l~~~~-~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~ 129 (188)
+||++++|+++++++.++ +..||+|++||++++++|+++|+++++||||++|+.++|.+.++ +||+|+|||++|
T Consensus 1 ~gd~~~al~a~~~l~~~~~~~~vv~~v~sS~~~~~~~~~~g~~~~~t~vG~~~i~~~~~~~~~-----~~ggE~sgg~~~ 75 (113)
T PF02880_consen 1 NGDELLALLADYLLEEHKPGGTVVVTVVSSRALDKIAEKHGGKVIRTKVGFKNIAEKMREENA-----VFGGEESGGFIF 75 (113)
T ss_dssp HHHHHHHHHHHHHHHCHTTTEEEEEETTS-THHHHHHHHTTSEEEEESSSHHHHHHHHHHTTE-----SEEEETTSEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHCCCEEEEecCCcHHHHHHHhhhce-----eEEecccCeEEe
Confidence 489999999999998644 33799999999999999999999999999999999999999987 599999999999
Q ss_pred CCCCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhh
Q 029748 130 KENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLKPLK 173 (188)
Q Consensus 130 ~~~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp~~~ 173 (188)
+++++.+|||+++++++ +|++.+ |+||+++ ++++|++|
T Consensus 76 ~~~~~~~Dgi~a~~~~l-~~l~~~----~~~ls~l-l~~l~~~Y 113 (113)
T PF02880_consen 76 PDFSYDKDGIYAALLLL-ELLAEE----GKTLSEL-LDELPKKY 113 (113)
T ss_dssp TTTESSE-HHHHHHHHH-HHHHHH----TS-HHHH-HHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHH-HHHHHh----CCCHHHH-HHHHhccC
Confidence 99999999999999877 788888 9999999 99999986
No 35
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.95 E-value=7.4e-27 Score=209.34 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=138.3
Q ss_pred CCCCCChhHHHHHHHHHHhcC----CcEEEEEcCCCCeEEEEcCCC----ccccchhHHHHHHHHHHHhC----C-C---
Q 029748 6 IPNPEDKTAMALTRAAVLENN----ADLGVVFDTDVDRSGVVDNKG----NPINGDKLIALMSAIVLKEH----P-G--- 69 (188)
Q Consensus 6 ~P~P~~~~~l~~l~~~v~~~~----adlgi~~D~DgDR~~lid~~G----~~i~~d~~~~l~~~~~l~~~----~-~--- 69 (188)
+|+|-.++.++.+++.+++.+ +|+|+++||||||++++|++| +++++|++++|+++++++.. + +
T Consensus 229 ~n~~~ga~~l~~l~~~v~~~~~~~~adlgiA~DGDADRl~~vd~~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~~~ 308 (513)
T cd03086 229 LNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKLT 308 (513)
T ss_pred CCCCcccccHHHHHHHHHhcCCCCCccEEEEECCCCCcEEEEEecCCCceEEECHHHHHHHHHHHHHHhccccCCCCCCC
Confidence 344444788999999998877 999999999999999999988 99999999999999998742 1 2
Q ss_pred CeEEEcCcCCHHHHHHHHH-cCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCC--eecCCC--------------
Q 029748 70 TTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKEN-------------- 132 (188)
Q Consensus 70 ~~vv~~v~ss~~le~ia~~-~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~--~~~~~~-------------- 132 (188)
..||.|+.||..+.+++++ +|+++++|+||++|+.++|.+.+. .++||.||| ++|+++
T Consensus 309 ~~VV~tv~sn~~~~~~l~~~~G~~~~~t~vG~k~v~~~m~e~~~-----~~ggE~sGHgtvif~~~~~~~~~~~~~~~~~ 383 (513)
T cd03086 309 IGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEFDI-----GVYFEANGHGTVLFSESALAKIEENSSLSDE 383 (513)
T ss_pred cEEEEEeccchHHHHHHHHHcCceEEEeCCcHHHHHHHHHHhCc-----ceEEeccCCEEEEECchHHhhhhhhccccch
Confidence 2699999999999999988 899999999999999999999886 499999999 999998
Q ss_pred ----------------CcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH---hhhhhcCCcc
Q 029748 133 ----------------YFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKD---LKPLKNSGNT 178 (188)
Q Consensus 133 ----------------~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~---lp~~~~~~~~ 178 (188)
..++|||+++++++ ++++.. +++++++ ++. +|........
T Consensus 384 ~~~~~~~l~~~~~~~n~~~gDgi~~al~vl-~~l~~~----~~~lsel-~~~y~~~p~~~~~v~v 442 (513)
T cd03086 384 QEKAAKTLLAFSRLINQTVGDAISDMLAVE-LILAAL----GWSPQDW-DNLYTDLPNRQLKVKV 442 (513)
T ss_pred hhhHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHHHh----CCCHHHH-HhhchhcCeeeeEEEe
Confidence 66899999999777 677776 9999999 884 4455443333
No 36
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.91 E-value=4.2e-23 Score=186.78 Aligned_cols=162 Identities=18% Similarity=0.181 Sum_probs=139.7
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCcEE------EEEcCCCCeEEEEcC--CC----ccccchhHHHHHHHHHHHh----CC
Q 029748 5 HIPNPEDKTAMALTRAAVLENNADLG------VVFDTDVDRSGVVDN--KG----NPINGDKLIALMSAIVLKE----HP 68 (188)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~adlg------i~~D~DgDR~~lid~--~G----~~i~~d~~~~l~~~~~l~~----~~ 68 (188)
+.|+|--++.++.+++.+++.++|+| +++||||||++++|+ +| ++++||++++|++.++.+. .+
T Consensus 287 ~lN~~cGad~vk~lq~~p~~~~ad~G~~~~~~~sfDGDADRlv~~d~~~~g~~~~~lldGDkI~~L~A~~l~~~l~~~~~ 366 (585)
T PTZ00302 287 LLNDKCGADYVQKTRKPPRAMKEWPGDEETRVASFDGDADRLVYFFPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQL 366 (585)
T ss_pred CCCCCCccccHHHHHHHHHhcCCCcCccCCeeEEECCCCCeEEEEEecCCCCccceecCHHHHHHHHHHHHHHHhhhcCC
Confidence 45566657889999999999999999 999999999999998 78 9999999999999998763 12
Q ss_pred CC----eEEEcCcCCHHHHHHHHH-cC-CcEEEEecchHHHHHHHHhcCcCCccceEEeeccCC--eecCC---------
Q 029748 69 GT----TIVTDARTSMALTKFITD-RG-GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKE--------- 131 (188)
Q Consensus 69 ~~----~vv~~v~ss~~le~ia~~-~g-~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~--~~~~~--------- 131 (188)
+. .||.|+.|+.++++++++ .| ++|++||||.|++.++|.+.+. .++||.||| ++|++
T Consensus 367 ~~~l~igVVqTayaNgast~yl~~~lg~~~v~~t~tGvk~l~~~a~e~di-----~iyfEaNGHGTvif~~~~~~~~~~~ 441 (585)
T PTZ00302 367 KKKLDIGVVQTAYANGASTNYLNELLGRLRVYCAPTGVKNLHPKAHKYDI-----GIYFEANGHGTVLFNEKALAEWAKF 441 (585)
T ss_pred CCCccceEEEeccCCHHHHHHHHHhcCCeeEEEEeCchHHHHHHHHhcCC-----eEEEccCCCEEEEECcHHHhhhhhh
Confidence 33 699999999999999999 89 9999999999999999999886 499999999 99999
Q ss_pred ---------------------CCcCCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHH---HhhhhhcCCc
Q 029748 132 ---------------------NYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQK---DLKPLKNSGN 177 (188)
Q Consensus 132 ---------------------~~~~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~---~lp~~~~~~~ 177 (188)
++...|||+.+++++ ++++.. +.+++++ ++ .+|.+.-...
T Consensus 442 ~~~~~~~~~a~~~L~~~~~l~n~~vGDai~~~L~v~-~iL~~~----~~sl~e~-~~~y~dlP~~~~kv~ 505 (585)
T PTZ00302 442 LAKQNALNSACRQLEKFLRLFNQTIGDAISDLLAVE-LALAFL----GLSFQDW-LNLYTDLPSRQDKVT 505 (585)
T ss_pred ccccchhhhHHHHHHHhHhhhcCCCccHHHHHHHHH-HHHHhh----CCCHHHH-HhhcccCCceeeeeE
Confidence 677899999998766 676666 9999999 88 4666654433
No 37
>PLN02895 phosphoacetylglucosamine mutase
Probab=99.90 E-value=4.9e-23 Score=185.34 Aligned_cols=161 Identities=15% Similarity=0.220 Sum_probs=137.0
Q ss_pred CCCCCCChhHHHHHHHHHHhcCC---cEE---EEEcCCCCeEEEEcCCC-----ccccchhHHHHHHHHHHHhC------
Q 029748 5 HIPNPEDKTAMALTRAAVLENNA---DLG---VVFDTDVDRSGVVDNKG-----NPINGDKLIALMSAIVLKEH------ 67 (188)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~a---dlg---i~~D~DgDR~~lid~~G-----~~i~~d~~~~l~~~~~l~~~------ 67 (188)
+.|+|-.++.++.++ .+++ ++ |+| +++||||||++++|++| ++++||++++|++.++.+..
T Consensus 252 ~lN~~cGad~v~~lq-~vp~-~~~~~d~G~~~~sfDGDADRlv~~d~~g~~~~~~llDGDkI~~L~A~~l~~~l~~~~~~ 329 (562)
T PLN02895 252 VLNEGVGADFVQKEK-VPPT-GFASKDVGLRCASLDGDADRLVYFYVSSAGSKIDLLDGDKIASLFALFIKEQLRILNGN 329 (562)
T ss_pred CCCCCCccCcHHHHH-hhhc-cCCccCCCCcceEEcCCCCEEEEEEcCCCcccCeEeCHHHHHHHHHHHHHHHhhhcccc
Confidence 567777677788777 6776 77 899 99999999999999888 89999999999999987652
Q ss_pred ----C-----CCeEEEcCcCCHHHHHHHHH-cCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCC--eecCCCCc-
Q 029748 68 ----P-----GTTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKENYF- 134 (188)
Q Consensus 68 ----~-----~~~vv~~v~ss~~le~ia~~-~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~--~~~~~~~~- 134 (188)
+ +..||.|+.||.++++++++ .|++|++||||.|++.++|.+.+. .++||.||| ++|+++..
T Consensus 330 ~~~~~~~~~l~~gVVqTayaNgast~yl~~~lg~~v~~t~tGvk~l~~~a~e~di-----gvyfEaNGHGTviFs~~~~~ 404 (562)
T PLN02895 330 GNEKPEELLVRLGVVQTAYANGASTAYLKQVLGLEVVCTPTGVKYLHEAAAEFDI-----GVYFEANGHGTVLFSERFLD 404 (562)
T ss_pred cccccccccCCCeEEEeccccHHHHHHHHHhcCCeEEEEeCchHHHHHHHHhcCc-----eEEEccCCCeEEEEChHHHH
Confidence 2 33799999999999999999 999999999999999999999886 499999999 99998765
Q ss_pred -----------------------------------CCCHHHHHHHHHHHHHHHHhcCCCCChhhhHHH---HhhhhhcCC
Q 029748 135 -----------------------------------LDDGAYMVVKIIIQMVRMKLEGSDEGIGMQRQK---DLKPLKNSG 176 (188)
Q Consensus 135 -----------------------------------~~Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~---~lp~~~~~~ 176 (188)
..|||+.+++++ ++++.. +.+++++ .+ .+|.+.-..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~linq~vGDai~~~L~vl-~iL~~~----~~sl~e~-~~~y~dlP~~~~kv 478 (562)
T PLN02895 405 WLEAAAAELSSKAKGSEAHKAARRLLAVSRLINQAVGDALSGLLLVE-AILQYR----GWSLAEW-NALYQDLPSRQLKV 478 (562)
T ss_pred HHhhhhhccccccccchhhHHHHHHHHHHHhhcCCccHHHHHHHHHH-HHHHHh----CCCHHHH-HhhCccCCceeEee
Confidence 689999998766 676766 9999999 88 466666444
Q ss_pred cc
Q 029748 177 NT 178 (188)
Q Consensus 177 ~~ 178 (188)
..
T Consensus 479 ~V 480 (562)
T PLN02895 479 KV 480 (562)
T ss_pred EE
Confidence 33
No 38
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=8.5e-23 Score=174.42 Aligned_cols=171 Identities=18% Similarity=0.125 Sum_probs=146.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC----CC-CeEEEc
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH----PG-TTIVTD 75 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~----~~-~~vv~~ 75 (188)
+|++.||+|+. .-...|.+.|...+.|||.++|+||||-+++..+|.+++|....|++|.++.... .+ ..++.+
T Consensus 252 DFGG~HPDPNL-TYAk~LV~rv~~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~~~Gv~GfARS 330 (558)
T KOG0625|consen 252 DFGGGHPDPNL-TYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFRKQGVKGFARS 330 (558)
T ss_pred ccCCCCCCCch-hhHHHHHHHhccCCCcccccccCCCcceeeeccCceeeccchhHHHHHhcchhcchhhhcCcchhhhc
Confidence 59999999994 5556666668888999999999999999999999999999999999998876431 12 358899
Q ss_pred CcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHHHhc
Q 029748 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (188)
Q Consensus 76 v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~~~~ 155 (188)
+.+|.+++.+|++.|.+|.+||+|+|++.+.|...+-. +||||| ...-++|.+++||+|+.+++|..|+.+.
T Consensus 331 mPTs~AlDrVak~~gl~~yEvPTGWKfF~nLmDAgkls-----iCGEES-FGTGSdHIREKDGiWAvlaWlsIlA~~k-- 402 (558)
T KOG0625|consen 331 MPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGKLS-----ICGEES-FGTGSDHIREKDGIWAVLAWLSILAHNK-- 402 (558)
T ss_pred CCchhHHHHHHHHcCCceEEcCchHHHHHhhhccccee-----eccccc-ccCCccccccccchhhHHHHHHHHHhcc--
Confidence 99999999999999999999999999999999988874 999997 3356789999999999999997776632
Q ss_pred CCCCChhhhHHHHhhhhhcCCccccccc
Q 029748 156 GSDEGIGMQRQKDLKPLKNSGNTSRKEG 183 (188)
Q Consensus 156 ~~~~~ls~~~l~~lp~~~~~~~~~~~~~ 183 (188)
...+.++ +.+.++.||-.+|+|-|-
T Consensus 403 --~~~vedI-~~~~W~~YGR~fftRYDY 427 (558)
T KOG0625|consen 403 --QNVVEDI-VKEHWAKYGRNFFTRYDY 427 (558)
T ss_pred --cccHHHH-HHHHHHHhCccceeecch
Confidence 2139999 999999999999999873
No 39
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.4e-21 Score=168.19 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=143.0
Q ss_pred CCCCCCCCCCChhHHH---HHHHHHHh-cCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCCC----CeE
Q 029748 1 MFPNHIPNPEDKTAMA---LTRAAVLE-NNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPG----TTI 72 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~---~l~~~v~~-~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~----~~v 72 (188)
+|.+.+|+|.-..++. .+..+++. .+.|||++.|+||||.+++.....+++|++.+++++.|+....+. ..|
T Consensus 243 ~F~~l~~D~ni~~~~ss~~~ma~l~~~~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~y~~~~~~~~~g~~~v 322 (524)
T COG0033 243 DFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRPYWGGIVAV 322 (524)
T ss_pred cccCCCCCCCEeEecCcHHHHHHhhccccccccccccCCCcccceeecCCCcccCchHHHHHHHHHHHhCCCccccceee
Confidence 4888899998655555 45555553 899999999999999999998778999999999999998887652 469
Q ss_pred EEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcCcCCccceEEeeccCCeecCCCCcCCCHHHHHHHHHHHHHHH
Q 029748 73 VTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRM 152 (188)
Q Consensus 73 v~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~~~~~~~~~~~E~sg~~~~~~~~~~~Dgi~a~~~ll~em~~~ 152 (188)
..+++||.+++++++++|.++.+|||||||+.+.+...+.. ||||||-+ ..|.+.+|++|+..+.+..|+..
T Consensus 323 ~ktl~sS~~iDRV~~~lGr~lyEvPvG~K~F~~~l~~g~~~-----~~GEESaG---a~~lRek~g~Wa~~~~~~Ilall 394 (524)
T COG0033 323 GKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGSFG-----FGGEESAG---ASFLREKGGVWATDKDGNILALL 394 (524)
T ss_pred eeccccHHHHHHHHHHhCCceEEcCCcceeeecccccccee-----eccccccc---ccceecCCCceeeechhHHHHHH
Confidence 99999999999999999999999999999999999988875 99999954 67778889988876655444432
Q ss_pred H---hcCCCCChhhhHHHHhhhhhcCCcccccccc
Q 029748 153 K---LEGSDEGIGMQRQKDLKPLKNSGNTSRKEGY 184 (188)
Q Consensus 153 ~---~~~~~~~ls~~~l~~lp~~~~~~~~~~~~~~ 184 (188)
. .+..++..++. .+++-.+|+..+|.|.|--
T Consensus 395 ~aei~a~t~~~~~~~-y~~~~r~~~~~~Yervda~ 428 (524)
T COG0033 395 AAEITAVTGKIPQEH-YAELGRNFGRPDYERVDAE 428 (524)
T ss_pred hhhchhhhccCHHHH-HHHHHHHhCcccHHHhcCc
Confidence 1 13347777888 8888888887789887753
No 40
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.20 E-value=2.7e-11 Score=86.84 Aligned_cols=46 Identities=52% Similarity=0.858 Sum_probs=42.4
Q ss_pred CCCC-CCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCC
Q 029748 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG 47 (188)
Q Consensus 1 ~F~~-~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G 47 (188)
.||+ +.|||+. ++++.+.+++++.++|+|+++||||||++++|++|
T Consensus 58 ~f~~~~~p~p~~-~~l~~~~~~v~~~~ad~g~~~DgDaDRl~~vd~~G 104 (104)
T PF02879_consen 58 DFPNQHAPNPEE-ESLQRLIKIVRESGADLGIAFDGDADRLGVVDENG 104 (104)
T ss_dssp TGTTTSTSSTST-TTTHHHHHHHHHSTTSEEEEE-TTSSBEEEEETTS
T ss_pred cccccccccccc-chhHHHHHHhhccCceEEEEECCcCceeEEECCCC
Confidence 4888 8999996 88999999999999999999999999999999987
No 41
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=4.1e-06 Score=74.26 Aligned_cols=93 Identities=19% Similarity=0.286 Sum_probs=78.1
Q ss_pred EEEEEcCCCCeEEEE--cCCC--ccccchhHHHHHHHHHHHhCC------CCeEEEcCcCCHHHHHHHHH-cCCcEEEEe
Q 029748 29 LGVVFDTDVDRSGVV--DNKG--NPINGDKLIALMSAIVLKEHP------GTTIVTDARTSMALTKFITD-RGGNHCLYR 97 (188)
Q Consensus 29 lgi~~D~DgDR~~li--d~~G--~~i~~d~~~~l~~~~~l~~~~------~~~vv~~v~ss~~le~ia~~-~g~~v~~t~ 97 (188)
....+|+|+||+..+ ++++ ++++||.+..+++.++..... ...||.|..|+.+-.+..+. .++.|+.|+
T Consensus 279 ~caSfDGDADRlvyf~~~~~~~f~llDGDkistlla~~l~~ll~~~~~~l~~GvVqtaYaNgast~yl~~~l~~~vv~v~ 358 (539)
T KOG2537|consen 279 RCASFDGDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVP 358 (539)
T ss_pred ceeeeecccceeEEEEecCCceeEeecchHHHHHHHHHHHHHHHHhhccceeeeEEEEeecCccHhhhhhhcCCceEEec
Confidence 478899999999777 5555 899999999999998755321 24689999988888887777 899999999
Q ss_pred cchHHHHHHHHhcCcCCccceEEeeccCC
Q 029748 98 VGYRNVIDKGVHLNEDGIETHLMMETSGH 126 (188)
Q Consensus 98 vG~~~v~~~~~~~~~~~~~~~~~~E~sg~ 126 (188)
+|-|++..++.+.... +.+|.+||
T Consensus 359 tGvKhlh~~A~efDiG-----iyFEaNGH 382 (539)
T KOG2537|consen 359 TGVKHLHHAAAEFDIG-----IYFEANGH 382 (539)
T ss_pred cccchHHHHHHhhcce-----eEEeccCc
Confidence 9999999999988765 77899998
No 42
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=82.28 E-value=8.1 Score=32.67 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=50.6
Q ss_pred HHHHHhcCCcEEEEEcCCCC---------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHc
Q 029748 19 RAAVLENNADLGVVFDTDVD---------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~DgD---------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~ 89 (188)
.+.+++.++|-++.+|+||+ -++++.++|.++++.. ... +++-.+-..+-++|++.
T Consensus 167 ~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l--------------~~~-~L~GItR~~vi~l~~~~ 231 (313)
T TIGR01123 167 QAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPL--------------SGS-ILPGITRDSLLQLAKDL 231 (313)
T ss_pred HHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCC--------------CCC-CCcchHHHHHHHHHHHc
Confidence 45667889999999999988 4556655556666531 111 22334445566789999
Q ss_pred CCcEEEEecchHHHHHH
Q 029748 90 GGNHCLYRVGYRNVIDK 106 (188)
Q Consensus 90 g~~v~~t~vG~~~v~~~ 106 (188)
|.+|.+.++....+.+.
T Consensus 232 Gi~v~e~~i~~~~l~~A 248 (313)
T TIGR01123 232 GMEVEERRIDIDELKAF 248 (313)
T ss_pred CCeEEEEecCHHHHHHH
Confidence 99999999998876654
No 43
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=77.64 E-value=12 Score=34.63 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccc-cchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCcE
Q 029748 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPI-NGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNH 93 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i-~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~v 93 (188)
.++..+.++..++| |+=+|-=|+|..+.|.+|+.+ .-..-.+=+..-..+..++..++...++..-.+.++......+
T Consensus 247 ~~q~~~~~~~~gFD-G~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~d~ 325 (559)
T PF13199_consen 247 INQMNKAIQNFGFD-GWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKVDF 325 (559)
T ss_dssp HHHHHHHHHHHT---EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--SS
T ss_pred HHHHHHHHHccCCc-eEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhcccccce
Confidence 45667778889999 999999999999999999888 5555555555555556677789999999999999998677777
Q ss_pred EEEec-----chHHHHHHHHhcCcC----CccceEEeec
Q 029748 94 CLYRV-----GYRNVIDKGVHLNED----GIETHLMMET 123 (188)
Q Consensus 94 ~~t~v-----G~~~v~~~~~~~~~~----~~~~~~~~E~ 123 (188)
+++.+ ....+.+.+.+.+.. |+..++|+-.
T Consensus 326 lY~EvW~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYm 364 (559)
T PF13199_consen 326 LYNEVWDDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYM 364 (559)
T ss_dssp EEEE--SBS-BHHHHHHHHHHHHHHH---S--EEEE---
T ss_pred eeeecccccccHHHHHHHHHHHhhhhccccchhhhHHHh
Confidence 77654 456666666655543 5666776543
No 44
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=74.44 E-value=4.3 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcC
Q 029748 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (188)
Q Consensus 1 ~F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~ 35 (188)
.|++..|||. -+.+....+++++.+.||.++.-+
T Consensus 61 E~~GVEPNP~-~~Tv~kaV~i~kee~idflLAVGG 94 (384)
T COG1979 61 EFGGVEPNPR-LETLMKAVEICKEENIDFLLAVGG 94 (384)
T ss_pred EecCCCCCch-HHHHHHHHHHHHHcCceEEEEecC
Confidence 3888999999 678999999999999999998854
No 45
>PRK08868 flagellar protein FlaG; Provisional
Probab=67.06 E-value=31 Score=26.25 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEE--EcC-CC---ccccchhHHHHHHHHH
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAIV 63 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~l--id~-~G---~~i~~d~~~~l~~~~~ 63 (188)
.+++.+.+.+...+.+|-|-+|.+.+|+.+ +|. .| +.|.+++++.|+..+-
T Consensus 75 ~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~ 131 (144)
T PRK08868 75 KMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLA 131 (144)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHHH
Confidence 456677777888999999999999999854 464 46 5678899999887764
No 46
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=60.08 E-value=29 Score=24.44 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEE--EcC-CC---ccccchhHHHHHHHH
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAI 62 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~l--id~-~G---~~i~~d~~~~l~~~~ 62 (188)
.+++.+.+.+...+..|-|.+|.+.+|+.+ +|. .| +-|.+++++-|...+
T Consensus 41 ~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 41 EAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp HHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 345566666778889999999999998854 465 57 457889998887665
No 47
>PRK08452 flagellar protein FlaG; Provisional
Probab=59.73 E-value=56 Score=24.14 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEE--EcC-CC---ccccchhHHHHHHHH
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAI 62 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~l--id~-~G---~~i~~d~~~~l~~~~ 62 (188)
.+.+.+.+.+...+.+|-|.+|.+.+|+.+ +|. .| +-|.+++++-|+.++
T Consensus 57 ~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 57 ELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred HHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 345555666677889999999999999854 364 35 567889999888775
No 48
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=58.97 E-value=71 Score=26.59 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=45.9
Q ss_pred HHHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
.+.+++.++|-++.+|.||. -++++. +|.+++|. -.. +++-.+=..+-++|++.|.
T Consensus 169 ~~~A~~~G~deal~ld~~g~V~E~~~sNlf~v~-~~~l~TP~---------------~~~-~L~GItR~~vl~~a~~~g~ 231 (292)
T PRK07544 169 KHAAEAKGYADALMLDYRGYVAEATGANIFFVK-DGVIHTPT---------------PDC-FLDGITRQTVIELAKRRGI 231 (292)
T ss_pred HHHHHHcCCCeEEEECCCCCEEEcCceEEEEEE-CCEEECCC---------------Ccc-cccchhHHHHHHHHHHcCC
Confidence 45667889999999999985 233333 45555553 111 2333344455678889999
Q ss_pred cEEEEecchHHHH
Q 029748 92 NHCLYRVGYRNVI 104 (188)
Q Consensus 92 ~v~~t~vG~~~v~ 104 (188)
+|...++....+.
T Consensus 232 ~v~e~~i~~~eL~ 244 (292)
T PRK07544 232 EVVERHIMPEELA 244 (292)
T ss_pred eEEEEecCHHHHh
Confidence 9999999887653
No 49
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=56.85 E-value=22 Score=24.36 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHH
Q 029748 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVL 64 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l 64 (188)
|+.+.+.+...-...-=.-|.||||+.+-. ++++-|++.+|+-
T Consensus 29 L~~I~~vlp~aT~tAFeYEDE~gDRITVRS-------DeEm~AMlsyy~~ 71 (91)
T cd06395 29 LDVIGQVLPEATTTAFEYEDEDGDRITVRS-------DEEMKAMLSYYCS 71 (91)
T ss_pred HHHHHHhcccccccceeeccccCCeeEecc-------hHHHHHHHHHHHH
Confidence 444445444444444445689999997763 5678888888753
No 50
>PRK07738 flagellar protein FlaG; Provisional
Probab=53.78 E-value=81 Score=23.07 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEE--EcC-CC---ccccchhHHHHHHHHH
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAIV 63 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~l--id~-~G---~~i~~d~~~~l~~~~~ 63 (188)
.+++++.+.+...+-+|-|.+|.+.+|+.+ +|. .| +.|.+++++-|+..+.
T Consensus 50 ~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~ 106 (117)
T PRK07738 50 EVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAMM 106 (117)
T ss_pred HHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHH
Confidence 445666677778899999999999999854 464 46 5678899998887763
No 51
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=49.90 E-value=1.1e+02 Score=25.42 Aligned_cols=68 Identities=10% Similarity=0.077 Sum_probs=41.9
Q ss_pred HHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCc
Q 029748 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~ 92 (188)
+.+++.++|-++.+|+||. -++++. +|.+++|.. ...+ ++-.+-..+-++|++.|.+
T Consensus 164 ~~a~~~g~de~l~ld~~g~v~E~s~sNlf~v~-~~~l~TP~~--------------~~~~-L~GItR~~il~la~~~g~~ 227 (298)
T TIGR01122 164 SEARRHGYDEAILLDVEGYVAEGSGENIFIVK-DGVLFTPPV--------------TSSI-LPGITRDTVITLAKELGIE 227 (298)
T ss_pred HHHHHcCCCEEEEECCCCCEEECCceEEEEEE-CCEEECCCC--------------CCCc-CcchHHHHHHHHHHHcCCc
Confidence 4456788999999999884 223332 234444420 0112 2233334455678999999
Q ss_pred EEEEecchHHH
Q 029748 93 HCLYRVGYRNV 103 (188)
Q Consensus 93 v~~t~vG~~~v 103 (188)
|.+.++....+
T Consensus 228 v~e~~i~~~eL 238 (298)
T TIGR01122 228 VVEQPISREEL 238 (298)
T ss_pred EEEEeCCHHHH
Confidence 99999988765
No 52
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=49.34 E-value=1.2e+02 Score=23.26 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=38.7
Q ss_pred HHHHhcCCcEEEEEcCCCCeEEEEcC---CC--ccccc--hhHHHHHHHHHHHhCC-CCeEEEcCcCCHHHHHHHHHcCC
Q 029748 20 AAVLENNADLGVVFDTDVDRSGVVDN---KG--NPING--DKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgDR~~lid~---~G--~~i~~--d~~~~l~~~~~l~~~~-~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
......+..+.++||+-......-.. .| .++++ +..-..+-.++..... +..|.+ |+|-..+-..+...|+
T Consensus 37 ~y~~~~~~~v~VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~V-VTSD~~iq~~~~~~GA 115 (166)
T PF05991_consen 37 EYAQFSGYEVIVVFDAYKVPGGSEEREEYGGIEVVFTKEGETADDYIERLVRELKNRPRQVTV-VTSDREIQRAARGRGA 115 (166)
T ss_pred HHhcccCCEEEEEEeCCcCCCCCceeeeeCceEEEECCCCCCHHHHHHHHHHHhccCCCeEEE-EeCCHHHHHHHhhCCC
Confidence 33345678899999973322211100 11 12222 2222333333333332 222332 5567777788888888
Q ss_pred cEEEEec
Q 029748 92 NHCLYRV 98 (188)
Q Consensus 92 ~v~~t~v 98 (188)
.++.+.-
T Consensus 116 ~~iss~e 122 (166)
T PF05991_consen 116 KRISSEE 122 (166)
T ss_pred EEEcHHH
Confidence 7665443
No 53
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=47.07 E-value=80 Score=26.22 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=39.6
Q ss_pred HHHHHhcCCcEEEEEcCCCCeEEEEcC--CCccccchhHHHHHHHHHHHhCCCCeEEEcCcC--------CHHHHHHHHH
Q 029748 19 RAAVLENNADLGVVFDTDVDRSGVVDN--KGNPINGDKLIALMSAIVLKEHPGTTIVTDART--------SMALTKFITD 88 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~DgDR~~lid~--~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~s--------s~~le~ia~~ 88 (188)
.+.+++.++|-++.+| ||. +.| .++++-- . ++..+++|..+ -..+-++|++
T Consensus 160 ~~eA~~~g~dd~l~ld-~g~----v~E~~~sN~f~~-------------~-~~~~l~TP~~~~~iL~Gitr~~il~~a~~ 220 (286)
T PRK06680 160 KQAAKEAGAQEAWMVD-DGF----VTEGASSNAWIV-------------T-KDGKLVTRPADNFILPGITRHTLIDLAKE 220 (286)
T ss_pred HHHHHHCCCCEEEEec-CCE----EEEcCcEEEEEE-------------E-ECCEEEeCCCCCCCCcCHHHHHHHHHHHH
Confidence 4556788999999999 773 222 1121100 0 01234443332 2455578899
Q ss_pred cCCcEEEEecchHHH
Q 029748 89 RGGNHCLYRVGYRNV 103 (188)
Q Consensus 89 ~g~~v~~t~vG~~~v 103 (188)
.|.+|.+.++....+
T Consensus 221 ~g~~v~e~~i~~~el 235 (286)
T PRK06680 221 LGLEVEERPFTLQEA 235 (286)
T ss_pred cCCeEEEEcCCHHHH
Confidence 999999999987754
No 54
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=46.89 E-value=1.2e+02 Score=25.32 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=42.1
Q ss_pred HHHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
.+..++.++|-++.+|.||. -++++ .+|++++|.. ...++ +-.+=..+-+++++.|.
T Consensus 170 ~~~A~~~g~dd~L~ld~~G~v~E~s~~Nif~~-~~g~l~TP~~--------------~~giL-~GItR~~vie~~~~~g~ 233 (292)
T PRK07849 170 LRYAARRGADDVIFTSTDGYVLEGPTSTVVIA-TDDRLLTPPP--------------WYGIL-PGTTQAALFEVAREKGW 233 (292)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEECCceEEEEE-ECCEEECCCC--------------cCCCC-ccHHHHHHHHHHHHcCC
Confidence 34566789999999999984 22222 2344444420 01122 22223344467788899
Q ss_pred cEEEEecchHHHH
Q 029748 92 NHCLYRVGYRNVI 104 (188)
Q Consensus 92 ~v~~t~vG~~~v~ 104 (188)
+|.+-++....+.
T Consensus 234 ~v~er~i~~~eL~ 246 (292)
T PRK07849 234 DCEYRALRPADLF 246 (292)
T ss_pred ceEEEECCHHHHh
Confidence 9999999887653
No 55
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=44.01 E-value=1.5e+02 Score=24.90 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=41.8
Q ss_pred HHHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
.+.+++.++|-++.+|+||. -++++. +|.+++|. -..=++|-.+=..+-++|++.|.
T Consensus 171 ~~ea~~~G~de~l~l~~~g~v~E~~~sNlf~v~-~~~l~TP~---------------~~~giL~GitR~~vl~~~~~~g~ 234 (306)
T PRK06606 171 KTEARRNGYDEALLLDVEGYVSEGSGENIFIVR-DGVLYTPP---------------LTSSILEGITRDTVITLAKDLGI 234 (306)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEcCceEEEEEE-CCEEECCC---------------CcCCcCCCHHHHHHHHHHHHcCC
Confidence 35566789999999999885 122221 23444442 00001223333444567889999
Q ss_pred cEEEEecchHHH
Q 029748 92 NHCLYRVGYRNV 103 (188)
Q Consensus 92 ~v~~t~vG~~~v 103 (188)
+|.+.++....+
T Consensus 235 ~v~e~~i~~~eL 246 (306)
T PRK06606 235 EVIERRITRDEL 246 (306)
T ss_pred cEEEEeCCHHHH
Confidence 999999988765
No 56
>PRK13356 aminotransferase; Provisional
Probab=42.95 E-value=1.3e+02 Score=24.87 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=42.5
Q ss_pred HHHHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcC
Q 029748 18 TRAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 18 l~~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g 90 (188)
..+.+++.++|-++.+|.||. -++++ .+|.+++|.. ... +++-.+=..+-++|++.|
T Consensus 163 a~~ea~~~g~deal~ld~~G~v~E~~~sNlf~v-~~~~l~TP~~--------------~~~-~L~GItR~~vi~~a~~~g 226 (286)
T PRK13356 163 ALREARSRGFDNALVLDMLGNVAETATSNVFMV-KDGVVFTPVP--------------NGT-FLNGITRQRVIALLREDG 226 (286)
T ss_pred HHHHHHHcCCCEEEEECCCCCEEEcCceEEEEE-ECCEEEcCCC--------------CCC-cccCHHHHHHHHHHHHcC
Confidence 346667889999999999883 11122 1234444320 011 122223344456889999
Q ss_pred CcEEEEecchHHHH
Q 029748 91 GNHCLYRVGYRNVI 104 (188)
Q Consensus 91 ~~v~~t~vG~~~v~ 104 (188)
.+|.+.++....+.
T Consensus 227 i~v~e~~i~~~eL~ 240 (286)
T PRK13356 227 VTVVETTLTYEDFL 240 (286)
T ss_pred CeEEEEecCHHHHH
Confidence 99999999877653
No 57
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=42.75 E-value=9 Score=21.51 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=17.3
Q ss_pred HhcCCcEEEEEcCCCCeEEEEcC
Q 029748 23 LENNADLGVVFDTDVDRSGVVDN 45 (188)
Q Consensus 23 ~~~~adlgi~~D~DgDR~~lid~ 45 (188)
.....+....+.|||.++.+...
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEE
T ss_pred cCCccccCEEEecCCCEEEEEec
Confidence 34567889999999999998853
No 58
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=42.69 E-value=1.4e+02 Score=24.59 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=43.0
Q ss_pred HHHHHhcCCcEEEEEcCC-CC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcC
Q 029748 19 RAAVLENNADLGVVFDTD-VD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~D-gD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g 90 (188)
.+.+++.++|=++.+|.| |. -++++. +|.+++|. -..-+++-.+-..+-++|++.|
T Consensus 153 ~~eA~~~g~de~l~ld~~~g~v~E~~~sNlf~v~-~~~l~TP~---------------~~~~~L~Gitr~~v~~~~~~~G 216 (279)
T cd01557 153 QKEAAEKGYDQALWLDGAHGYVAEVGTMNIFFVK-DGELITPP---------------LDGSILPGITRDSILELARDLG 216 (279)
T ss_pred HHHHHHCCCCEEEEEcCCCCEEEEeCcEEEEEEE-CCEEEcCC---------------CcCCCCCchHHHHHHHHHHHcC
Confidence 455667889999999988 63 122222 34444442 0101223333444556889999
Q ss_pred CcEEEEecchHHHH
Q 029748 91 GNHCLYRVGYRNVI 104 (188)
Q Consensus 91 ~~v~~t~vG~~~v~ 104 (188)
.+|.+.++....+.
T Consensus 217 i~v~e~~i~~~~l~ 230 (279)
T cd01557 217 IKVEERPITRDELY 230 (279)
T ss_pred CeEEEEeCCHHHHh
Confidence 99999999887653
No 59
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=42.51 E-value=1.6e+02 Score=23.74 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=39.5
Q ss_pred HHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCc
Q 029748 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~ 92 (188)
+.+.+.++|-++.+|+||. -++++. +|++++|.. ..=+.|-.+-..+-+++++.|.+
T Consensus 136 ~~a~~~g~de~l~l~~~g~v~E~~~~Nif~~~-~~~~~TP~~---------------~~g~L~Gitr~~~l~~~~~~g~~ 199 (249)
T cd01559 136 REARDRGADEALFLDTDGRVIEGTASNLFFVK-DGELVTPSL---------------DRGGLAGITRQRVIELAAAKGYA 199 (249)
T ss_pred HHHHhcCCCEEEEEcCCCCEEEecceEEEEEE-CCEEECCCc---------------ccCccccHHHHHHHHHHHHcCce
Confidence 3455678999999998874 112221 233333320 00122223334445678889999
Q ss_pred EEEEecchHHH
Q 029748 93 HCLYRVGYRNV 103 (188)
Q Consensus 93 v~~t~vG~~~v 103 (188)
|.+.++....+
T Consensus 200 v~e~~i~~~el 210 (249)
T cd01559 200 VDERPLRLEDL 210 (249)
T ss_pred EEEEecCHHHH
Confidence 99999887765
No 60
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.95 E-value=1.9e+02 Score=27.30 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCe-EEEEcCCCcc--------ccchhHHHHHHHHHHHhCCCCeEEEcCc--CCHHHHHHHHHcCCcEEEE
Q 029748 28 DLGVVFDTDVDR-SGVVDNKGNP--------INGDKLIALMSAIVLKEHPGTTIVTDAR--TSMALTKFITDRGGNHCLY 96 (188)
Q Consensus 28 dlgi~~D~DgDR-~~lid~~G~~--------i~~d~~~~l~~~~~l~~~~~~~vv~~v~--ss~~le~ia~~~g~~v~~t 96 (188)
-+.+.+||--.- +.++|=+|++ ++..++.-++..+ + .+.||.+-+ .|..++++|+++|+. .+|
T Consensus 244 ~lIVGIDPGiTtgiAvldldGevl~~~S~r~~~~~eVve~I~~l----G-~PvvVAtDVtp~P~~V~KiAasf~A~-ly~ 317 (652)
T COG2433 244 SLIVGIDPGITTGIAVLDLDGEVLDLESRRGIDRSEVVEFISEL----G-KPVVVATDVTPAPETVKKIAASFNAV-LYT 317 (652)
T ss_pred ceEEEeCCCceeeEEEEecCCcEEeeeccccCCHHHHHHHHHHc----C-CceEEEccCCCChHHHHHHHHHcCCc-ccC
Confidence 356666664332 2333444543 4455555544443 2 244554443 578999999999985 445
Q ss_pred ecc
Q 029748 97 RVG 99 (188)
Q Consensus 97 ~vG 99 (188)
|--
T Consensus 318 P~~ 320 (652)
T COG2433 318 PDR 320 (652)
T ss_pred Ccc
Confidence 443
No 61
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=41.85 E-value=28 Score=19.23 Aligned_cols=18 Identities=22% Similarity=-0.049 Sum_probs=15.1
Q ss_pred EEEEEcCCCCeEEEEcCC
Q 029748 29 LGVVFDTDVDRSGVVDNK 46 (188)
Q Consensus 29 lgi~~D~DgDR~~lid~~ 46 (188)
-|+++|++++|+...|-.
T Consensus 12 ~~la~d~~~~~lYw~D~~ 29 (43)
T smart00135 12 NGLAVDWIEGRLYWTDWG 29 (43)
T ss_pred CEEEEeecCCEEEEEeCC
Confidence 479999999999888754
No 62
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=41.32 E-value=74 Score=18.77 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcC
Q 029748 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDN 45 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~ 45 (188)
..+.++.+.+.+.+.....+.|.++.=+++++.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 16 DSLEEALEIMRKNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp SBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEH
T ss_pred CcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEH
Confidence 457888888999999999999988776677753
No 63
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=41.21 E-value=61 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=18.5
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 7 PNPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
.+|.+ +..-.++.+.|.+.++|.||.+.+.|
T Consensus 35 ~~~~dYpd~a~~va~~V~~g~~~~GIliCGtG 66 (144)
T TIGR00689 35 DERVDYPDYAKLVADKVVAGEVSLGILICGTG 66 (144)
T ss_pred CCCCChHHHHHHHHHHHHcCCCceEEEEcCCc
Confidence 34444 55556666777766666666665544
No 64
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=39.69 E-value=1.7e+02 Score=24.43 Aligned_cols=69 Identities=7% Similarity=-0.061 Sum_probs=41.6
Q ss_pred HHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCc
Q 029748 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~ 92 (188)
...++.++|-++.+|.||. -++++. +|++++|. -..=++|-.+-..+-+++++.|.+
T Consensus 164 ~ea~~~g~de~l~ld~~g~v~E~s~sNlf~v~-~~~l~TP~---------------l~~giL~GItR~~il~~~~~~g~~ 227 (299)
T PRK12479 164 IEAAQAGVLEALMLNQQGYVCEGSGDNVFVVK-DGKVLTPP---------------SYLGALEGITRNSVIELCERLSIP 227 (299)
T ss_pred HHHHHcCCCEEEEEcCCCcEEECCceEEEEEE-CCEEEeCC---------------CcCCCCcCHHHHHHHHHHHHcCCe
Confidence 3355788999999998883 112222 23444432 000122333344555788899999
Q ss_pred EEEEecchHHHH
Q 029748 93 HCLYRVGYRNVI 104 (188)
Q Consensus 93 v~~t~vG~~~v~ 104 (188)
|.+.++....+.
T Consensus 228 v~e~~i~~~~L~ 239 (299)
T PRK12479 228 CEERPFTRHDVY 239 (299)
T ss_pred EEEEeCCHHHHH
Confidence 999999887653
No 65
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=39.24 E-value=66 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=18.0
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 7 PNPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
++|.+ +..-..+.+.|.+.++|+||.+.+.|
T Consensus 36 ~~~~dYpd~a~~va~~V~~~~~~~GIliCGtG 67 (143)
T TIGR01120 36 SERTDYPHYAKQVALAVAGGEVDGGILICGTG 67 (143)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCceEEEEcCCc
Confidence 34444 44455566667666666666665544
No 66
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=38.70 E-value=2e+02 Score=22.88 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHH
Q 029748 52 GDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGV 108 (188)
Q Consensus 52 ~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~ 108 (188)
+|.-.++.+..-. ..-...+++|-.++..-.+..+.+|.+|+.++..+....+.+.
T Consensus 59 GN~g~alA~~a~~-~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~ 114 (244)
T cd00640 59 GNTGIALAAAAAR-LGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFDDAIALAK 114 (244)
T ss_pred cHHHHHHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHH
Confidence 4544444433322 2223468888888888888899999999999887544333333
No 67
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=38.21 E-value=54 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|.+..|||. .+..++..+.+++.++|+.|++=
T Consensus 65 f~~v~~np~-~~~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 65 YDGTQPNPT-TENVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHHcCCCEEEEeC
Confidence 566789999 56788899999999999998884
No 68
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=37.99 E-value=42 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=18.5
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 7 PNPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
++|.+ +..-..+.+.|.+.++|+||.+++.|
T Consensus 36 ~~~~dy~~~a~~va~~V~~~~~d~GIliCgtG 67 (140)
T PF02502_consen 36 EDSVDYPDFAEKVAEAVASGEADRGILICGTG 67 (140)
T ss_dssp TST--HHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred CCCCCHHHHHHHHHHHHHcccCCeEEEEcCCC
Confidence 34444 55556667777777777776666544
No 69
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=37.98 E-value=1.9e+02 Score=23.48 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=41.3
Q ss_pred HHHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
.+.+++.++|-++.+|+||. -++++. +|.+++|.. ...++ +-.+-..+-+.|++.|.
T Consensus 153 ~~~a~~~g~de~l~ld~~g~v~E~~~sNif~~~-~~~l~TP~~--------------~~~~L-~GitR~~vl~~a~~~g~ 216 (270)
T cd01558 153 KQEAKEAGADEAILLDADGLVTEGSSSNVFIVK-NGVLVTPPL--------------DNGIL-PGITRATVIELAKELGI 216 (270)
T ss_pred HHHHHHcCCCEEEEEcCCCEEEEcCcEEEEEEE-CCEEECCCC--------------cCCCC-CChHHHHHHHHHHHcCC
Confidence 35566789999999999883 112222 234444320 01122 22223344467888899
Q ss_pred cEEEEecchHHHH
Q 029748 92 NHCLYRVGYRNVI 104 (188)
Q Consensus 92 ~v~~t~vG~~~v~ 104 (188)
+|.+.++....+.
T Consensus 217 ~v~e~~i~~~eL~ 229 (270)
T cd01558 217 PVEERPFSLEELY 229 (270)
T ss_pred eEEEEeCCHHHHh
Confidence 9999999887653
No 70
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=37.85 E-value=55 Score=27.95 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=29.9
Q ss_pred CeEEEcCcCCHHHHHHHHHcCCcEEEEec--c-hHHHHHHHHh
Q 029748 70 TTIVTDARTSMALTKFITDRGGNHCLYRV--G-YRNVIDKGVH 109 (188)
Q Consensus 70 ~~vv~~v~ss~~le~ia~~~g~~v~~t~v--G-~~~v~~~~~~ 109 (188)
-.+|+|-..|.--.++.+.+|++|+.|+. | .+...+++++
T Consensus 88 ~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~e 130 (300)
T COG0031 88 LIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKE 130 (300)
T ss_pred EEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHH
Confidence 45788888888888899999999999998 3 3334444433
No 71
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=37.04 E-value=46 Score=17.44 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=12.6
Q ss_pred cEEEEEcCCCCeEEEEcCC
Q 029748 28 DLGVVFDTDVDRSGVVDNK 46 (188)
Q Consensus 28 dlgi~~D~DgDR~~lid~~ 46 (188)
.-|++.|++| ++.+.|..
T Consensus 4 P~gvav~~~g-~i~VaD~~ 21 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSG 21 (28)
T ss_dssp EEEEEEETTS-EEEEEECC
T ss_pred CcEEEEeCCC-CEEEEECC
Confidence 3588999665 48888754
No 72
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=36.59 E-value=2.1e+02 Score=22.95 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcC-----CCCeEEEEcCCCc
Q 029748 12 KTAMALTRAAVLENNADLGVVFDT-----DVDRSGVVDNKGN 48 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~-----DgDR~~lid~~G~ 48 (188)
++.++...+.+.+.++|+.+++|- |..++.+++.+|.
T Consensus 166 ~~l~~~a~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~ 207 (229)
T PRK06732 166 EELIKVARASLIKNQADYILANDLTDISADQHKALLVSKNEV 207 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCe
Confidence 455667777788899999999887 3556777777663
No 73
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=36.19 E-value=83 Score=24.09 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCccccchhHHHHHHHHH
Q 029748 36 DVDRSGVVDNKGNPINGDKLIALMSAIV 63 (188)
Q Consensus 36 DgDR~~lid~~G~~i~~d~~~~l~~~~~ 63 (188)
++|.+++.|++|+.++-.++..++-...
T Consensus 66 ~~~~~i~LDe~Gk~~sS~~fA~~l~~~~ 93 (157)
T PRK00103 66 KGARVIALDERGKQLSSEEFAQELERWR 93 (157)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 4678888899999999998888877663
No 74
>PLN02883 Branched-chain amino acid aminotransferase
Probab=36.00 E-value=2e+02 Score=25.31 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=44.4
Q ss_pred HHHHhcCCcEEEEEcCCCC-eE--------EEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcC
Q 029748 20 AAVLENNADLGVVFDTDVD-RS--------GVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgD-R~--------~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g 90 (188)
+.+++.++|=++.+|++.. .+ +++. +|.+++|. -..-++|-.+-..+-++|++.|
T Consensus 244 ~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~-~~~l~TP~---------------l~~~iLpGITR~svl~la~~~G 307 (384)
T PLN02883 244 RRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVK-GNIIVTPA---------------TSGTILGGITRKSIIEIALDLG 307 (384)
T ss_pred HHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEE-CCEEEeCC---------------CcCCcCcCHHHHHHHHHHHHCC
Confidence 5567889999999998743 33 2221 23444442 0011223334455567899999
Q ss_pred CcEEEEecchHHHHH
Q 029748 91 GNHCLYRVGYRNVID 105 (188)
Q Consensus 91 ~~v~~t~vG~~~v~~ 105 (188)
.+|.+.++....+.+
T Consensus 308 ~~V~Er~i~~~eL~~ 322 (384)
T PLN02883 308 YKVEERRVPVEELKE 322 (384)
T ss_pred CeEEEEECCHHHHHh
Confidence 999999999876644
No 75
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=35.92 E-value=58 Score=28.61 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|.+..|||. .+..++..+.+++.++|+.|++=
T Consensus 83 ~~~v~~~P~-~~~v~~~~~~~r~~~~D~IiavG 114 (395)
T PRK15454 83 WPCPVGEPC-ITDVCAAVAQLRESGCDGVIAFG 114 (395)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCcCEEEEeC
Confidence 556779999 46688899999999999988884
No 76
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=34.90 E-value=65 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=26.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. .+.++++.+.+++.++|+.|++=
T Consensus 58 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavG 89 (375)
T cd08179 58 FEGVEPDPS-VETVLKGAEAMREFEPDWIIALG 89 (375)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 566789999 57788899999999999888874
No 77
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=34.35 E-value=88 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
+.....+.+.|.+.++|.||.+.+.|
T Consensus 44 pd~a~~va~~V~~g~~~~GIliCGtG 69 (148)
T PRK05571 44 PDYAKKVAEAVVAGEADRGILICGTG 69 (148)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 55566667777776666666666544
No 78
>PRK02991 D-serine dehydratase; Provisional
Probab=34.23 E-value=3.1e+02 Score=24.65 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHH
Q 029748 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDK 106 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~ 106 (188)
...|++|-.+|..-.+..+.+|++|+.+...+..-.+.
T Consensus 182 ~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~ 219 (441)
T PRK02991 182 KVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEE 219 (441)
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHH
Confidence 35799999999999999999999999998775533333
No 79
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=34.08 E-value=2.4e+02 Score=22.77 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCc
Q 029748 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~ 92 (188)
+.+++.++|-++.+|++|. -++++ .+|++++|.. ...++ +-.+-..+-++|++.|.+
T Consensus 150 ~~A~~~g~de~llln~~g~v~E~s~sNif~~-~~~~l~TP~~--------------~~~~L-~GItR~~il~~~~~~g~~ 213 (261)
T TIGR03461 150 AELENSEADEALVLDTDGNVVECTAANIFWR-KGNQVFTPDL--------------SYCGV-AGVMRQHVLALLPALGYE 213 (261)
T ss_pred HHhhhcCCCEEEEECCCCCEEEeccEEEEEE-ECCEEECCCc--------------cccCc-ccHHHHHHHHHHHHcCCe
Confidence 4456788999999998884 11222 2334444421 00111 222223444678889999
Q ss_pred EEEEecchHHH
Q 029748 93 HCLYRVGYRNV 103 (188)
Q Consensus 93 v~~t~vG~~~v 103 (188)
|.+.++....+
T Consensus 214 v~E~~i~~~eL 224 (261)
T TIGR03461 214 IEEVKAGLEEL 224 (261)
T ss_pred EEEEecCHHHH
Confidence 99988887754
No 80
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=33.57 E-value=81 Score=16.80 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCeEEEEc
Q 029748 15 MALTRAAVLENNADLGVVFDTDVDRSGVVD 44 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~~D~DgDR~~lid 44 (188)
+.++.+.+.+.+....++.|.++.-+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~ 40 (49)
T smart00116 11 LEEALELLREHGIRRLPVVDEEGRLVGIVT 40 (49)
T ss_pred HHHHHHHHHHhCCCcccEECCCCeEEEEEE
Confidence 556666777778888888888766667765
No 81
>smart00415 HSF heat shock factor.
Probab=33.24 E-value=54 Score=23.06 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCC
Q 029748 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNK 46 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~ 46 (188)
+..|-+++...+.+-.|.+++||+.+.|.|++
T Consensus 6 ~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~ 37 (105)
T smart00415 6 LTKLYLLVEDPSTDKIISWSPSGKSFVIWDPE 37 (105)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCEEEEcCHH
Confidence 56678888888887789999999887777643
No 82
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=32.87 E-value=89 Score=23.93 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCCCCCC-CCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 2 FPNHIPN-PED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 2 F~~~~P~-P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
|++..++ |.+ +.-...+.+.|.+.++|+||.+++-|
T Consensus 32 ~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTG 69 (151)
T COG0698 32 FGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTG 69 (151)
T ss_pred ccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCC
Confidence 4444455 343 33344455666666777877777655
No 83
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=32.82 E-value=3.3e+02 Score=23.58 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCcEEEEecch
Q 029748 52 GDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGY 100 (188)
Q Consensus 52 ~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~ 100 (188)
-|+++.++++.+.. ++..|+++..+=..-...|+..|++++.++...
T Consensus 84 sde~i~~l~~~~~~--~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~ 130 (356)
T COG0079 84 SDELIELLVRAFVE--PGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE 130 (356)
T ss_pred hHHHHHHHHHHhhc--CCCEEEEcCCChHHHHHHHHhcCCeEEEecccc
Confidence 46777777777665 456788888887777888999999999998875
No 84
>PRK15138 aldehyde reductase; Provisional
Probab=32.56 E-value=72 Score=27.93 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcC
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~ 35 (188)
|.+..|||. .+..+++.+.+++.++|+.|++=|
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiGG 94 (387)
T PRK15138 62 FGGIEPNPT-YETLMKAVKLVREEKITFLLAVGG 94 (387)
T ss_pred ECCccCCCC-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 556779999 567888999999999999988743
No 85
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=32.38 E-value=3e+02 Score=24.38 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.5
Q ss_pred CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHH
Q 029748 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNV 103 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v 103 (188)
...|++|-.+|..-.+..+.+|++|+.+..++..-
T Consensus 159 ~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~a 193 (404)
T cd06447 159 KVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKA 193 (404)
T ss_pred CEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHHH
Confidence 35799999999999999999999999998765433
No 86
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=32.30 E-value=61 Score=24.69 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCcEEEE-----EcCCCCeEEEEcCCCccccc
Q 029748 15 MALTRAAVLENNADLGVV-----FDTDVDRSGVVDNKGNPING 52 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~-----~D~DgDR~~lid~~G~~i~~ 52 (188)
+....-.+...+||+.++ .=|.|.=+.+.|.+|++++.
T Consensus 81 ~~K~LmavD~~dADlvIARGRLGvPGSGSmlvimD~kGRiLta 123 (154)
T PF11576_consen 81 LSKALMAVDISDADLVIARGRLGVPGSGSMLVIMDSKGRILTA 123 (154)
T ss_dssp HHHHHHHHHHH--SEEEEEEE-SSTTS-EEEEEEETTS-EEEE
T ss_pred HHhHHHheeccCCcEEEEcccccCCCCccEEEEEcCCCcEEee
Confidence 444444567789999887 45777777888999998876
No 87
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=31.71 E-value=80 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=26.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|.+..|||. .+.++++.+.+++.++|+.+++=
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavG 91 (357)
T cd08181 60 FDEVEENPS-LETIMEAVEIAKKFNADFVIGIG 91 (357)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 556779998 56788899999999999888884
No 88
>PRK09620 hypothetical protein; Provisional
Probab=31.58 E-value=2.4e+02 Score=22.83 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCC-----CCeEEEEcCCCc
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTD-----VDRSGVVDNKGN 48 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~D-----gDR~~lid~~G~ 48 (188)
++.++...+.+.+.++|+.+++|-+ .+.+.+++.+|.
T Consensus 160 ~~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~~~ii~~~~~ 201 (229)
T PRK09620 160 EELFERAKNRMEEAKASVMIANSPHSLYSRGAMHYVIGQDGK 201 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccccCCCcEEEEEeCCCc
Confidence 3456777788889999999999874 245777777764
No 89
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=31.49 E-value=1.1e+02 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.069 Sum_probs=19.2
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 7 PNPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
.+|.+ +..-..+.+.|.+..+|.||.+.+.|
T Consensus 37 ~e~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (171)
T PRK08622 37 FTRTHYPIFGKKVGEAVASGEADLGVCICGTG 68 (171)
T ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 34444 55566667777777777777666554
No 90
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=31.24 E-value=82 Score=27.41 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=26.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. .+.++.+.+.+++.++|+.|++=
T Consensus 61 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 92 (383)
T cd08186 61 YNKVTPNPT-VDQVDEAAKLGREFGAQAVIAIG 92 (383)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHHcCCCEEEEeC
Confidence 666789999 57788899999999999888774
No 91
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.10 E-value=63 Score=22.19 Aligned_cols=31 Identities=13% Similarity=-0.045 Sum_probs=24.7
Q ss_pred CHHHHHHHHHcCCcEEEEe-cchHHHHHHHHh
Q 029748 79 SMALTKFITDRGGNHCLYR-VGYRNVIDKGVH 109 (188)
Q Consensus 79 s~~le~ia~~~g~~v~~t~-vG~~~v~~~~~~ 109 (188)
...+.+.|+++|..++.++ .|...+.+.+.+
T Consensus 64 ~~~vk~~akk~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 64 MWKVKKAAKKYGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHh
Confidence 5566788999999999999 787777766654
No 92
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=30.50 E-value=94 Score=27.67 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=43.6
Q ss_pred CeEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHHhcC
Q 029748 38 DRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLN 111 (188)
Q Consensus 38 DR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~~~~ 111 (188)
|.+.+|||. +-++++++..++.+ .+++.+||++- +.++.-.--+-++-.|-.++.+++....
T Consensus 352 ~~FiIIDEa-QNLTpheikTiltR----~G~GsKIVl~g-------d~aQiD~~yl~~~snGLtyvverfk~~~ 413 (436)
T COG1875 352 DSFIIIDEA-QNLTPHELKTILTR----AGEGSKIVLTG-------DPAQIDTPYLDETSNGLTYVVEKFKGHP 413 (436)
T ss_pred cceEEEehh-hccCHHHHHHHHHh----ccCCCEEEEcC-------CHHHcCCccccCCCccHHHHHHHhcCCC
Confidence 456788876 77999999988766 45678899764 3344333345667788899999866543
No 93
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=30.20 E-value=1.1e+02 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.135 Sum_probs=19.5
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 7 PNPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
.+|.+ +..-..+.+.|.+..+|.||.+.+.|
T Consensus 37 ~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (171)
T PRK12615 37 HTRTHYPIFGKKVGEAVVNGQADLGVCICGTG 68 (171)
T ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 34444 55556667777777777777776554
No 94
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.96 E-value=84 Score=27.26 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|.+..|||. -+.+++..+.+++.++|+.|++=
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 60 FDKVEPNPT-TTTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred eCCccCCCC-HHHHHHHHHHHHHcCCCEEEEeC
Confidence 556779999 56788888999999999988874
No 95
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=29.89 E-value=90 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcC
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~ 35 (188)
|....|||. .+.++.+.+.+++.++|+.+++=|
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavGG 94 (377)
T cd08176 62 YDGVKPNPT-ITNVKDGLAVFKKEGCDFIISIGG 94 (377)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 556678999 567889999999999998888743
No 96
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=29.60 E-value=87 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=27.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcC
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~ 35 (188)
|+...|||. .+..+++.+.+++.++|+.|++=|
T Consensus 55 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 55 FSDVEPDPS-LETVRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred ecCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 666789999 567888889999999998887743
No 97
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=29.56 E-value=1.1e+02 Score=23.83 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=18.7
Q ss_pred CCCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 8 NPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 8 ~P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
+|.+ +..-..+.+.|.+.++|.||.+.+.|
T Consensus 38 ~~~dYpd~a~~va~~V~~g~~~~GIliCGTG 68 (171)
T TIGR01119 38 TRTHYPIFGKKVGEAVVSGEADLGVCICGTG 68 (171)
T ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 4443 55556666777777777777766554
No 98
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.24 E-value=64 Score=23.63 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=15.6
Q ss_pred cEEEEEcCCCCeEEEEcC
Q 029748 28 DLGVVFDTDVDRSGVVDN 45 (188)
Q Consensus 28 dlgi~~D~DgDR~~lid~ 45 (188)
.+.++.||||-++-++|.
T Consensus 110 ~~~fi~DPDG~~ie~~~~ 127 (127)
T cd08358 110 GVYEVKAPGGYKFYLIDK 127 (127)
T ss_pred CEEEEECCCCCEEEEecC
Confidence 589999999999988873
No 99
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=28.86 E-value=2.6e+02 Score=21.79 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=39.8
Q ss_pred EEEcCCC---CeEEEEcCCCccccchhH-HHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCcEEEEecchH
Q 029748 31 VVFDTDV---DRSGVVDNKGNPINGDKL-IALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYR 101 (188)
Q Consensus 31 i~~D~Dg---DR~~lid~~G~~i~~d~~-~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~ 101 (188)
+++|=|| |--..+|++|+.+..-.+ -.+-...+++..- ..-++|-.-|.++++-|+.+|++.+..-+-.|
T Consensus 11 li~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi-~vAIITGr~s~ive~Ra~~LGI~~~~qG~~dK 84 (170)
T COG1778 11 LILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGI-KVAIITGRDSPIVEKRAKDLGIKHLYQGISDK 84 (170)
T ss_pred EEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCC-eEEEEeCCCCHHHHHHHHHcCCceeeechHhH
Confidence 4455554 223455677754433111 1122233334322 22345788899999999999999887655554
No 100
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=28.77 E-value=61 Score=23.03 Aligned_cols=30 Identities=0% Similarity=0.114 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhhc
Q 029748 137 DGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLKPLKN 174 (188)
Q Consensus 137 Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp~~~~ 174 (188)
+.+|.. |.+|++.. ++|+.++ +.+|+++.+
T Consensus 33 ~~FW~~---L~eIA~~r----~lt~a~L-Iaei~d~r~ 62 (102)
T COG4321 33 NPFWDI---LKEIAERR----KLTVAAL-IAEIDDERG 62 (102)
T ss_pred hHHHHH---HHHHHHhc----CCcHHHH-HHHHHhcCC
Confidence 666754 45888877 9999999 999998854
No 101
>PRK06443 chorismate mutase; Validated
Probab=28.75 E-value=1.3e+02 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=21.6
Q ss_pred hCCCCeEEEcCcCCHHHHHHHHHcCCcEEE
Q 029748 66 EHPGTTIVTDARTSMALTKFITDRGGNHCL 95 (188)
Q Consensus 66 ~~~~~~vv~~v~ss~~le~ia~~~g~~v~~ 95 (188)
..+|..|+++- .+..+++-|...|+.++-
T Consensus 104 ~~~g~~v~i~~-~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 104 SRPGIEIYIED-NPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred hcCCcEEEecc-CchHHHHhhhhcCCeEec
Confidence 44666677665 788889989888887653
No 102
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=28.32 E-value=3.3e+02 Score=23.55 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=40.7
Q ss_pred HHHHhcCCcEEEEEcCCC-CeE--------EEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcC
Q 029748 20 AAVLENNADLGVVFDTDV-DRS--------GVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~Dg-DR~--------~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g 90 (188)
+.+++.++|-++.+|.+. ..+ +++. +|.++++.. ...+ ++-.+-..+-++|++.|
T Consensus 211 ~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~-~~~l~TP~l--------------~~~i-L~GItR~~vl~la~~~G 274 (355)
T PLN03117 211 IEAKSSGFSDVLFLDAATGKNIEELSACNIFILK-GNIVSTPPT--------------SGTI-LPGVTRKSISELARDIG 274 (355)
T ss_pred HHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEE-CCEEEeCCC--------------cCCC-CCCHHHHHHHHHHHHCC
Confidence 455678999999999863 332 2222 234444420 0011 12222345557899999
Q ss_pred CcEEEEecchHHH
Q 029748 91 GNHCLYRVGYRNV 103 (188)
Q Consensus 91 ~~v~~t~vG~~~v 103 (188)
.+|.+.+.....+
T Consensus 275 i~v~Er~i~~~eL 287 (355)
T PLN03117 275 YQVEERDVSVDEL 287 (355)
T ss_pred CEEEEEEccHHHH
Confidence 9999999987755
No 103
>PRK06110 hypothetical protein; Provisional
Probab=28.16 E-value=3.7e+02 Score=22.68 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=25.6
Q ss_pred CeEEEcCcCCHHHHHHHHHcCCcEEEEecchH
Q 029748 70 TTIVTDARTSMALTKFITDRGGNHCLYRVGYR 101 (188)
Q Consensus 70 ~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~ 101 (188)
..|++|-.++..-.+..+.+|++|+.+...+.
T Consensus 96 ~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~ 127 (322)
T PRK06110 96 ATIVVPHGNSVEKNAAMRALGAELIEHGEDFQ 127 (322)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 46888888887777888999999999865543
No 104
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=28.07 E-value=96 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=24.1
Q ss_pred CCeEEEcCcCCHHHHH--HHHHcCCcEEEEecchH
Q 029748 69 GTTIVTDARTSMALTK--FITDRGGNHCLYRVGYR 101 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~--ia~~~g~~v~~t~vG~~ 101 (188)
|.+++.++.++...|+ +.+.+|+++++|++...
T Consensus 127 Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~ 161 (362)
T KOG1252|consen 127 GYKCIITMPEKMSKEKRILLRALGAEIILTPPAAG 161 (362)
T ss_pred CceEEEEechhhhHHHHHHHHHcCCEEEecChHHc
Confidence 4456667777777776 57888999999987544
No 105
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=27.98 E-value=3.3e+02 Score=22.10 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=39.7
Q ss_pred HHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCCc
Q 029748 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~~ 92 (188)
+..++.++|-++.+|+||. -++++. +|++++|.. ...+ +|-.+=..+-+.|++.|.+
T Consensus 152 ~~A~~~g~de~l~l~~~g~v~E~s~sNif~v~-~~~~~TP~~--------------~~~~-L~GitR~~vl~~~~~~g~~ 215 (268)
T PRK06092 152 AELEQTEADEALVLDSEGWVIECCAANLFWRK-GGVVYTPDL--------------DQCG-VAGVMRQFILELLAQSGYP 215 (268)
T ss_pred HHHHhcCCCEEEEECCCCCEEEccceEEEEEE-CCEEECCCc--------------cccC-cccHHHHHHHHHHHHcCCe
Confidence 3455688999999998884 112221 234444420 0011 1222233344678889999
Q ss_pred EEEEecchHHH
Q 029748 93 HCLYRVGYRNV 103 (188)
Q Consensus 93 v~~t~vG~~~v 103 (188)
|.+.++....+
T Consensus 216 v~e~~i~~~dL 226 (268)
T PRK06092 216 VVEVDASLEEL 226 (268)
T ss_pred EEEEECCHHHH
Confidence 99999988765
No 106
>PLN02565 cysteine synthase
Probab=27.68 E-value=1.8e+02 Score=24.75 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=25.1
Q ss_pred CeEEEcCcCCHHHHHHHHHcCCcEEEEec
Q 029748 70 TTIVTDARTSMALTKFITDRGGNHCLYRV 98 (188)
Q Consensus 70 ~~vv~~v~ss~~le~ia~~~g~~v~~t~v 98 (188)
-.|++|-.+|..-.+.++.+|++|+.+.-
T Consensus 93 ~~ivvp~~~~~~k~~~i~~~GA~V~~~~~ 121 (322)
T PLN02565 93 LIITMPASMSLERRIILLAFGAELVLTDP 121 (322)
T ss_pred EEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Confidence 46889999999999999999999998764
No 107
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=27.60 E-value=1e+02 Score=27.13 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHH
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~ 61 (188)
|....|||. .+..+...+.+++.++|..|++-| |-.++--+..++++.
T Consensus 63 f~~v~p~P~-~~~v~~~~~~~~~~~~D~iIalGG-----------GS~~D~AK~i~~~~~ 110 (377)
T COG1454 63 FDEVEPEPT-IETVEAGAEVAREFGPDTIIALGG-----------GSVIDAAKAIALLAE 110 (377)
T ss_pred ecCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeCC-----------ccHHHHHHHHHHHhh
Confidence 667889999 567888889999999999998843 344455555555554
No 108
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=27.42 E-value=1e+02 Score=26.72 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. .+.++++.+.+++.++|+.|++=
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 91 (376)
T cd08193 60 FDDVEADPP-EAVVEAAVEAARAAGADGVIGFG 91 (376)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 556779999 57788899999999999888773
No 109
>PRK13410 molecular chaperone DnaK; Provisional
Probab=27.25 E-value=4.3e+02 Score=25.06 Aligned_cols=72 Identities=10% Similarity=-0.077 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhC------CCCeEEEcCcCC------HHHHHHHHHcCCcEE
Q 029748 27 ADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH------PGTTIVTDARTS------MALTKFITDRGGNHC 94 (188)
Q Consensus 27 adlgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~------~~~~vv~~v~ss------~~le~ia~~~g~~v~ 94 (188)
..+-+..|++|+-..-+...++.++++++.+++...+.+.- +-..+|++|.+. .++.+.|+..|.++.
T Consensus 87 ~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~ 166 (668)
T PRK13410 87 VPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVE 166 (668)
T ss_pred CCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeE
Confidence 34667778877643334445789999999999988876531 123456556543 255677888899988
Q ss_pred EEec
Q 029748 95 LYRV 98 (188)
Q Consensus 95 ~t~v 98 (188)
+.-.
T Consensus 167 ~li~ 170 (668)
T PRK13410 167 RILN 170 (668)
T ss_pred EEec
Confidence 7533
No 110
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=27.13 E-value=35 Score=23.80 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCeEEEEcC
Q 029748 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDN 45 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~~D~DgDR~~lid~ 45 (188)
+..|.+++.....+=.|.+++||+.+.|.|+
T Consensus 3 ~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~ 33 (103)
T PF00447_consen 3 LSKLYEMLEDPENSDIIRWSPDGDSFIIHDP 33 (103)
T ss_dssp HHHHHHHHCTTTTTTTCEECTTSSEEEES-H
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCEEEEeec
Confidence 3456777777666667888999998887764
No 111
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=27.11 E-value=1e+02 Score=26.71 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=26.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcC
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D~ 35 (188)
|....|||. .+..++..+.+++.++|+.+++=|
T Consensus 63 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 63 FDEVKPNPT-ITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 556779999 567888889999999998888743
No 112
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=26.76 E-value=1.4e+02 Score=22.78 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=17.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCCcEEEEEcCCC
Q 029748 8 NPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (188)
Q Consensus 8 ~P~~-~~~l~~l~~~v~~~~adlgi~~D~Dg 37 (188)
+|.+ +..-..+.+.|.+.+++.||.+++.|
T Consensus 42 ~~~dYp~~a~~va~~V~~~~~~~GIliCGtG 72 (151)
T PTZ00215 42 ESVDYPDFAEKVCEEVLKGEADTGILVCGSG 72 (151)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 4443 44455566667666666666665544
No 113
>PRK02539 hypothetical protein; Provisional
Probab=26.54 E-value=45 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.1
Q ss_pred CeEEEEcCCCccccchhHHHH
Q 029748 38 DRSGVVDNKGNPINGDKLIAL 58 (188)
Q Consensus 38 DR~~lid~~G~~i~~d~~~~l 58 (188)
+.+-|+|++|+.|+|+.+--+
T Consensus 49 ~~i~ivD~~G~dVTP~Klk~~ 69 (85)
T PRK02539 49 EGIKIVDEEGNDVTPEKLRQV 69 (85)
T ss_pred ccceEECCCCCCCCHHHHHHH
Confidence 557788999999999987664
No 114
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=26.49 E-value=1.1e+02 Score=26.47 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=26.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. .+.++++.+.+++.++|+.|++=
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~d~IIaiG 91 (374)
T cd08189 60 YDGVPPDPT-IENVEAGLALYRENGCDAILAVG 91 (374)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 555779999 57788899999999999888774
No 115
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.93 E-value=1.5e+02 Score=19.76 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCC
Q 029748 14 AMALTRAAVLENNADLGVVFDTDVDRSGVVDNK 46 (188)
Q Consensus 14 ~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~ 46 (188)
.+..+.+.+.+.+....++.|+|+.-+++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 44 (113)
T cd04607 12 SILDALRKIDKNALRIVLVVDENGRLLGTVTDG 44 (113)
T ss_pred CHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcH
Confidence 356666677777888899999998888888653
No 116
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=25.61 E-value=48 Score=20.86 Aligned_cols=15 Identities=33% Similarity=0.373 Sum_probs=9.2
Q ss_pred CCCeEEEEcCCCccc
Q 029748 36 DVDRSGVVDNKGNPI 50 (188)
Q Consensus 36 DgDR~~lid~~G~~i 50 (188)
-|||+.+.|.+|+..
T Consensus 8 ~GdrVQlTD~Kgr~~ 22 (54)
T PF14801_consen 8 AGDRVQLTDPKGRKH 22 (54)
T ss_dssp TT-EEEEEETT--EE
T ss_pred CCCEEEEccCCCCee
Confidence 488999999888643
No 117
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=25.53 E-value=3.3e+02 Score=21.82 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcC-----CCCeEEEEcCCC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDT-----DVDRSGVVDNKG 47 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~-----DgDR~~lid~~G 47 (188)
++.++...+.+.+.++|+.+++|- |..++.+++.+|
T Consensus 165 ~~l~~~a~~kl~~~~~d~ivaN~~~~~~~~~~~~~li~~~~ 205 (227)
T TIGR02114 165 EELVKVARASLIKNQADFILANDLTDISADQHKALLIEKNQ 205 (227)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhcCCCCceEEEEeCCC
Confidence 345666677788899999999876 345667777765
No 118
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=25.45 E-value=87 Score=20.53 Aligned_cols=29 Identities=0% Similarity=0.061 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhh
Q 029748 137 DGAYMVVKIIIQMVRMKLEGSDEGIGMQRQKDLKPLK 173 (188)
Q Consensus 137 Dgi~a~~~ll~em~~~~~~~~~~~ls~~~l~~lp~~~ 173 (188)
+.+|.+ |.+|+... |+|++++ +.+|-.+.
T Consensus 20 ~~FW~~---L~eiA~~~----g~s~~~l-i~~id~~r 48 (67)
T PF13467_consen 20 PAFWDA---LEEIAARE----GLSLNAL-IAEIDARR 48 (67)
T ss_dssp HHHHHH---HHHHHHHT----T--HHHH-HHHHHHHH
T ss_pred HHHHHH---HHHHHHHc----CCCHHHH-HHHHHHcC
Confidence 455654 55898888 9999999 99996554
No 119
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.29 E-value=1.1e+02 Score=26.31 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. -+.++++.+.+++.++|+.|++=
T Consensus 54 ~~~~~~~p~-~~~v~~~~~~~~~~~~D~IIavG 85 (367)
T cd08182 54 FDDVQPNPD-LEDLAAGIRLLREFGPDAVLAVG 85 (367)
T ss_pred EcCcCCCcC-HHHHHHHHHHHHhcCcCEEEEeC
Confidence 455678998 57788899999999999888774
No 120
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=25.18 E-value=3.9e+02 Score=21.98 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=39.8
Q ss_pred HHHHhcCCcEEEEEcCCCCeE--------EEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 20 AAVLENNADLGVVFDTDVDRS--------GVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 20 ~~v~~~~adlgi~~D~DgDR~--------~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
...++.++|-++.+|.+|. + +++ .+|++++|. -..-++|-.+-..+-+++++.|.
T Consensus 163 ~~A~~~g~de~L~ld~~g~-v~E~s~sNlf~~-~~~~l~TP~---------------~~~~~L~GitR~~ll~~~~~~g~ 225 (288)
T PRK08320 163 IEANLAGVDEAIMLNDEGY-VAEGTGDNIFIV-KNGKLITPP---------------TYAGALEGITRNAVIEIAKELGI 225 (288)
T ss_pred HHHHHcCCCEEEEECCCCe-EEEcCcEEEEEE-ECCEEECCC---------------CcCCCCcCHHHHHHHHHHHHcCC
Confidence 4456788999999998872 2 111 122333332 00112223333445577888999
Q ss_pred cEEEEecchHHHH
Q 029748 92 NHCLYRVGYRNVI 104 (188)
Q Consensus 92 ~v~~t~vG~~~v~ 104 (188)
+|.+.++....+.
T Consensus 226 ~v~e~~l~~~dL~ 238 (288)
T PRK08320 226 PVREELFTLHDLY 238 (288)
T ss_pred eEEEEECCHHHHH
Confidence 9999999877653
No 121
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=24.74 E-value=1.6e+02 Score=19.66 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCC-CCeEEEEcCC
Q 029748 13 TAMALTRAAVLENNADLGVVFDTD-VDRSGVVDNK 46 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi~~D~D-gDR~~lid~~ 46 (188)
..+.++.+.+.+.+.....+.|++ |.-+++++..
T Consensus 59 ~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~ 93 (98)
T cd04618 59 RSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSR 93 (98)
T ss_pred CcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehh
Confidence 457778888888999999999987 7777887654
No 122
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=24.32 E-value=1.3e+02 Score=25.93 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcC--CcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENN--ADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~--adlgi~~D 34 (188)
|+...|||. .+.+++..+.+++.+ +|+.+++=
T Consensus 55 ~~~v~~~pt-~~~v~~~~~~~~~~~~~~D~IIaiG 88 (355)
T TIGR03405 55 IDDVAPNPD-VAQLDGLYARLWGDEGACDLVIALG 88 (355)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 667789999 567888888888866 88888774
No 123
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=24.22 E-value=1.3e+02 Score=26.59 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=26.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. .+.+++..+.+++.++|+.|++=
T Consensus 57 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 88 (414)
T cd08190 57 YDDVRVEPT-DESFKDAIAFAKKGQFDAFVAVG 88 (414)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 555678998 57788889999999999988884
No 124
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.06 E-value=3.2e+02 Score=22.28 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=35.4
Q ss_pred EEcCCCCeEEEEcCCCccccchhHHHHHHHHHHHhCC-CCeEEEcCcCCHHHHHHHHHcCCcEE--EEecchH
Q 029748 32 VFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRGGNHC--LYRVGYR 101 (188)
Q Consensus 32 ~~D~DgDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~-~~~vv~~v~ss~~le~ia~~~g~~v~--~t~vG~~ 101 (188)
.++..|+-+.++|+ | +=+|-.+.+- ++.+.+..+ .-.|.+|+.+..+...+..... +++ .+|.-|.
T Consensus 119 ~~~~~g~~VIlVDD-G-iATGatm~aA-i~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D-~vvc~~~P~~F~ 187 (220)
T COG1926 119 VPSLKGRTVILVDD-G-IATGATMKAA-VRALRAKGPKEIVIAVPVAPEDAAAELESEAD-EVVCLYMPAPFE 187 (220)
T ss_pred CCCCCCCEEEEEeC-C-cchhHHHHHH-HHHHHhcCCceEEEEcccCCHHHHHHHHhhcC-eEEEEcCCccHH
Confidence 46777887888874 3 2334333322 233333333 3446678777777776665443 333 3455544
No 125
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=24.02 E-value=1.6e+02 Score=22.15 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVD 38 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgD 38 (188)
+..-..+.+.|.+.++|.||.+++.|=
T Consensus 41 pd~a~~va~~V~~~e~~~GIliCGtGi 67 (141)
T TIGR01118 41 VDVTLAVASEVQKDEQNLGIVIDAYGA 67 (141)
T ss_pred HHHHHHHHHHHHcCCCceEEEEcCCCH
Confidence 555666777788888888888877663
No 126
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=23.37 E-value=4.3e+02 Score=23.25 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=43.0
Q ss_pred HHHHHhcCCcEEEEEcC--CCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHc
Q 029748 19 RAAVLENNADLGVVFDT--DVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~--DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~ 89 (188)
.+.+++.++|=++.+|+ +|. -++++. +|.+++|. -..-++|-.+-..+-++|++.
T Consensus 247 ~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~-~~~l~TP~---------------l~~~iL~GITR~sIl~la~~~ 310 (388)
T PLN02259 247 LSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVK-GRTISTPA---------------TNGTILEGITRKSVMEIASDQ 310 (388)
T ss_pred HHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEE-CCEEEcCC---------------CcCCcCcCHHHHHHHHHHHHC
Confidence 35567889999999997 543 112221 12333332 001123334445556789999
Q ss_pred CCcEEEEecchHHHHH
Q 029748 90 GGNHCLYRVGYRNVID 105 (188)
Q Consensus 90 g~~v~~t~vG~~~v~~ 105 (188)
|.+|.+.++....+.+
T Consensus 311 G~~V~Er~i~~~eL~~ 326 (388)
T PLN02259 311 GYQVVEKAVHVDEVMD 326 (388)
T ss_pred CCeEEEEECCHHHHHh
Confidence 9999999998876543
No 127
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.35 E-value=2.1e+02 Score=19.18 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCCcEEE--EEcCCCCeEEEEcCCCccc
Q 029748 13 TAMALTRAAVLENNADLGV--VFDTDVDRSGVVDNKGNPI 50 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi--~~D~DgDR~~lid~~G~~i 50 (188)
+.++.+.+.+.+.++++.. ..-+.|-++.+.|++|+.+
T Consensus 71 ~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~i 110 (114)
T cd07261 71 AAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRL 110 (114)
T ss_pred HHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEE
Confidence 3466667777777776532 2234455667778888654
No 128
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=23.32 E-value=74 Score=22.64 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCeEEE
Q 029748 17 LTRAAVLENNADLGVVFDTDVDRSGV 42 (188)
Q Consensus 17 ~l~~~v~~~~adlgi~~D~DgDR~~l 42 (188)
.+.+.+.+++|||||.|=+.|---.+
T Consensus 37 klGdvM~~e~Ad~GiSFCGSGGAGAi 62 (115)
T PF14272_consen 37 KLGDVMKKENADFGISFCGSGGAGAI 62 (115)
T ss_pred hHHHHHHhhCCCcceEEecCCCccce
Confidence 35788899999999999887764433
No 129
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=23.16 E-value=2.1e+02 Score=19.27 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCC
Q 029748 14 AMALTRAAVLENNADLGVVFDTDVDRSGVVDNK 46 (188)
Q Consensus 14 ~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~ 46 (188)
.+.++.+.+.+.+....++.|++|.-+++++..
T Consensus 11 ~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~ 43 (114)
T cd04619 11 TLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKT 43 (114)
T ss_pred cHHHHHHHHHhcCCCEEEEECCCCCEEEEEehH
Confidence 356666667778888999999998878888643
No 130
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=23.05 E-value=1.6e+02 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVD 38 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgD 38 (188)
+..-..+.+.|.+.+++.||.+++.|=
T Consensus 40 pd~a~~va~~V~~~e~~~GIliCGtGi 66 (141)
T PRK12613 40 IDNTLAVAKAVNEAEGRLGIMVDAYGA 66 (141)
T ss_pred HHHHHHHHHHHHcCCCceEEEEcCCCH
Confidence 455666777787777777777776653
No 131
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=22.91 E-value=2.3e+02 Score=18.50 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCeEEEEcC
Q 029748 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDN 45 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~~D~DgDR~~lid~ 45 (188)
++++.+.+.+.+.+..++.|++|.-+++++.
T Consensus 12 ~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~ 42 (106)
T cd04582 12 LSDALGLMDDSDLRALTVVDADGQPLGFVTR 42 (106)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCEEEEEeH
Confidence 5555556677778888888988887888864
No 132
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=22.58 E-value=3e+02 Score=19.80 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCC-CccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 14 AMALTRAAVLENNADLGVVFDTDVDRSGVVDNK-GNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 14 ~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~-G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
+|+.+.++|+ +|+.+.++|.+ |+-++.. ++..++++.-.++ .|+-++.++..+++-+|-
T Consensus 21 TLedi~~lV~------------~g~~f~V~DakTgeDiT~~----iL~QII~E~E~~g---~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 21 TLEDIRDLVR------------EGREFQVVDSKSGDDLTRS----ILLQIIAEEESGG---EPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred eHHHHHHHHH------------CCCeEEEEECCCCchhHHH----HHHHHHHHHHhCC---CCCCCHHHHHHHHHHhCh
Confidence 4888888886 46778899865 7655555 5555555543332 267778889998887664
No 133
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=22.54 E-value=1.5e+02 Score=25.20 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=25.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. -+.++++.+.+++.++|+.+++=
T Consensus 55 ~~~v~~~p~-~~~v~~~~~~~~~~~~d~IiaiG 86 (332)
T cd08180 55 FSDVVPDPP-IEVVAKGIKKFLDFKPDIVIALG 86 (332)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEEC
Confidence 455678998 56788889999999999888774
No 134
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=22.49 E-value=1.5e+02 Score=25.83 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=25.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. -+..++..+.+++.++|+.|++=
T Consensus 64 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 95 (382)
T PRK10624 64 YDGVKPNPT-IEVVKEGVEVFKASGADYLIAIG 95 (382)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 555779998 56788888899999999888774
No 135
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=22.37 E-value=4e+02 Score=21.18 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHhcCCcEEEEEcCCCC-------eEEEEcCCCccccchhHHHHHHHHHHHhCCCCeEEEcCcCCHHHHHHHHHcCC
Q 029748 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (188)
Q Consensus 19 ~~~v~~~~adlgi~~D~DgD-------R~~lid~~G~~i~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~~le~ia~~~g~ 91 (188)
.+..++.++|-++.+|.+|. -++++. +|++++|. -..=+.+-.+-..+-+.|++.|.
T Consensus 139 ~~~a~~~g~de~llld~~g~v~E~s~sNlf~~~-~~~l~TP~---------------~~~g~L~GitR~~vl~~~~~~g~ 202 (256)
T cd00449 139 KQEAAEAGADEALLLDDNGYVTEGSASNVFIVK-DGELVTPP---------------LDGGILPGITRDSVIELAKELGI 202 (256)
T ss_pred HHHHHHcCCCEEEEECCCCcEEEcCceEEEEEE-CCEEEeCC---------------CCCCcCcchhHHHHHHHHHHcCC
Confidence 34455688888999988864 112221 23333332 00101222233445567889999
Q ss_pred cEEEEecchHHHH
Q 029748 92 NHCLYRVGYRNVI 104 (188)
Q Consensus 92 ~v~~t~vG~~~v~ 104 (188)
+|.+.++....+.
T Consensus 203 ~v~e~~i~~~dL~ 215 (256)
T cd00449 203 KVEERPISLDELY 215 (256)
T ss_pred eEEEEecCHHHHh
Confidence 9999999877653
No 136
>PLN03013 cysteine synthase
Probab=22.25 E-value=3.6e+02 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.3
Q ss_pred CeEEEcCcCCHHHHHHHHHcCCcEEEEecc
Q 029748 70 TTIVTDARTSMALTKFITDRGGNHCLYRVG 99 (188)
Q Consensus 70 ~~vv~~v~ss~~le~ia~~~g~~v~~t~vG 99 (188)
..||+|-.+|..-.+..+.+|++|+.+...
T Consensus 201 ~~VvvP~~~s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 201 LILTMPASMSMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred EEEEECCCCcHHHHHHHHHcCCEEEEECCC
Confidence 358888888888888889999999988643
No 137
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.10 E-value=77 Score=22.55 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCeEE
Q 029748 17 LTRAAVLENNADLGVVFDTDVDRSG 41 (188)
Q Consensus 17 ~l~~~v~~~~adlgi~~D~DgDR~~ 41 (188)
.+.+.+++++|||||.|=+.|---.
T Consensus 37 klGdVM~~e~Ad~GiSFCGSGGAGA 61 (115)
T TIGR03577 37 KLGDVMKQENADLGISFCGSGGAGA 61 (115)
T ss_pred hHHHHHhhhcCccceEEecCCCccc
Confidence 3578889999999999988775433
No 138
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.85 E-value=2.3e+02 Score=18.70 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCeEEEEcC
Q 029748 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDN 45 (188)
Q Consensus 15 l~~l~~~v~~~~adlgi~~D~DgDR~~lid~ 45 (188)
++++.+.+.+.+.+..++.|.|+.-+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~ 42 (112)
T cd04624 12 IREAAKLMAEENVGSVVVVDPDERPIGIVTE 42 (112)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCEEEEeeH
Confidence 5666666677778888888988777777753
No 139
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=21.83 E-value=2.4e+02 Score=18.52 Aligned_cols=38 Identities=21% Similarity=0.082 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhcCCcEE--EEEcCCCCe-EEEEcCCCccc
Q 029748 13 TAMALTRAAVLENNADLG--VVFDTDVDR-SGVVDNKGNPI 50 (188)
Q Consensus 13 ~~l~~l~~~v~~~~adlg--i~~D~DgDR-~~lid~~G~~i 50 (188)
+.++.+.+.+.+.++.+. ...++.|-| +.+.|++|+.+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRI 105 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EE
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEE
Confidence 357788888888888753 555667744 45558888765
No 140
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=21.82 E-value=5.2e+02 Score=23.57 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=27.1
Q ss_pred CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchH
Q 029748 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYR 101 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~ 101 (188)
...|++|..+|..--+.++.+|++|+.+...+.
T Consensus 90 ~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~~d 122 (499)
T TIGR01124 90 KALIVMPETTPDIKVDAVRGFGGEVVLHGANFD 122 (499)
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEeCcCHH
Confidence 357999999998877889999999998865543
No 141
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=21.80 E-value=3.5e+02 Score=24.23 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=31.9
Q ss_pred CCeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHH
Q 029748 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGV 108 (188)
Q Consensus 69 ~~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~ 108 (188)
...|++|-.+|..-.+..+.+|++|+.+...+..-.+.++
T Consensus 177 ~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~ 216 (431)
T TIGR02035 177 QVTVHMSADAKQWKKDKLRSKGVTVVEYESDYGVAVEEGR 216 (431)
T ss_pred CEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHH
Confidence 3579999999999999999999999999887654433333
No 142
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=21.79 E-value=2.2e+02 Score=24.23 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCeEEEEcCCC
Q 029748 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG 47 (188)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~lid~~G 47 (188)
+.-.+.+..++...++|..+..|.-||-+..=||.|
T Consensus 103 ~~l~~al~~l~~~~~iD~Ii~VDvGgDvLa~G~E~~ 138 (297)
T PF06626_consen 103 QGLARALRELAEKLGIDAIILVDVGGDVLARGDEPG 138 (297)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCceEeecCccc
Confidence 344566788889999999999999999887767764
No 143
>PRK01546 hypothetical protein; Provisional
Probab=21.71 E-value=62 Score=22.01 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=16.1
Q ss_pred CeEEEEcCCCccccchhHHHH
Q 029748 38 DRSGVVDNKGNPINGDKLIAL 58 (188)
Q Consensus 38 DR~~lid~~G~~i~~d~~~~l 58 (188)
|.+-++|++|+-++|+.+-.+
T Consensus 50 ~~i~vvD~~G~dVTP~Klk~~ 70 (79)
T PRK01546 50 KGIKVVNEQGTDVTPAKLKAL 70 (79)
T ss_pred ccceEECCCCCCCCHHHHHHH
Confidence 557778888998999876544
No 144
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=21.62 E-value=1.2e+02 Score=19.74 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHh-cCCcEEEEEcCCCCe
Q 029748 12 KTAMALTRAAVLE-NNADLGVVFDTDVDR 39 (188)
Q Consensus 12 ~~~l~~l~~~v~~-~~adlgi~~D~DgDR 39 (188)
..+++.+..++.. .+..=+++||.|+|.
T Consensus 7 ~~~L~iLi~WLedNi~~es~iiFDNded~ 35 (65)
T PF06117_consen 7 EEALEILIAWLEDNIDCESDIIFDNDEDK 35 (65)
T ss_pred HHHHHHHHHHHHcccCCCCCeeecCCCcc
Confidence 4567888888763 556668888888764
No 145
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=21.46 E-value=1e+02 Score=21.62 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCeEEEEcCCCccccchhH
Q 029748 27 ADLGVVFDTDVDRSGVVDNKGNPINGDKL 55 (188)
Q Consensus 27 adlgi~~D~DgDR~~lid~~G~~i~~d~~ 55 (188)
-|.=+.+++....++++|.+|.++++=++
T Consensus 50 ~~skV~~N~~T~~~Vi~d~~G~Fvsgwkl 78 (92)
T PF11429_consen 50 KDSKVYFNPKTNNVVIIDKDGNFVSGWKL 78 (92)
T ss_dssp TT-EEEEETTTTEEEEE-TTS-EEEEEE-
T ss_pred CCcEEEEeCCCCeEEEEcCCCCEEEEEec
Confidence 36678889999999999999998887444
No 146
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=21.29 E-value=4.3e+02 Score=21.06 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCeEEEEcCCCccccchhHHHHHHHHHHHhCCC-CeEEEcCcC---C---HHHHHHHHHcCCcEEE
Q 029748 37 VDRSGVVDNKGNPINGDKLIALMSAIVLKEHPG-TTIVTDART---S---MALTKFITDRGGNHCL 95 (188)
Q Consensus 37 gDR~~lid~~G~~i~~d~~~~l~~~~~l~~~~~-~~vv~~v~s---s---~~le~ia~~~g~~v~~ 95 (188)
++++++||+ ++=+|+.++-++..+.-. .|. ..+++++.- . ...++++++.|+.+..
T Consensus 121 ~~~lVLVDD--EiSTG~T~lnli~al~~~-~p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~ 183 (191)
T PF15609_consen 121 ARTLVLVDD--EISTGNTFLNLIRALHAK-YPRKRYVVASLLDWRSEEDRARFEALAEELGIPIDV 183 (191)
T ss_pred CCCEEEEec--CccchHHHHHHHHHHHHh-CCCceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEE
Confidence 568999986 456777777777666544 343 345544432 2 2346788888887654
No 147
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=21.27 E-value=5e+02 Score=21.85 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHhCCC-CeEEEcCcCCHHHHHHHHHcCCcEEEEecc
Q 029748 53 DKLIALMSAIVLKEHPG-TTIVTDARTSMALTKFITDRGGNHCLYRVG 99 (188)
Q Consensus 53 d~~~~l~~~~~l~~~~~-~~vv~~v~ss~~le~ia~~~g~~v~~t~vG 99 (188)
++.+.++...+.. ++ ..|+++..+=......++.+|++++..+..
T Consensus 84 ~e~i~~~~~~~~~--~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~ 129 (351)
T PRK01688 84 DEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL 129 (351)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC
Confidence 4555555554433 43 567776666556677788888888877664
No 148
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=21.23 E-value=1.5e+02 Score=24.00 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=32.7
Q ss_pred HHHHHHHH--hcCCc-EEEEEcCCCCeEEEEcCCCccccchhHHHHHHH
Q 029748 16 ALTRAAVL--ENNAD-LGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61 (188)
Q Consensus 16 ~~l~~~v~--~~~ad-lgi~~D~DgDR~~lid~~G~~i~~d~~~~l~~~ 61 (188)
+.|+..|. +.+.+ +=++++++|. +.+.|++|+.++.+.+..++..
T Consensus 123 ~lLryFV~~Qe~ki~~vhvv~~~~g~-f~l~D~~~~~i~~~~~~~~~~~ 170 (221)
T PF08812_consen 123 QLLRYFVDIQEPKIELVHVVIDEDGS-FILYDEEGKPISNEELEEYIDE 170 (221)
T ss_pred HHHHHHHHhcCcCceEEEEEEeCCCc-EEEEcCCCCCCCHHHHHHHHHH
Confidence 34444443 34444 4577787776 9999999999999988887777
No 149
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=20.98 E-value=1.6e+02 Score=25.48 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=26.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. .+.++++.+.+++.++|+.|++=
T Consensus 57 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 88 (375)
T cd08194 57 FDDVVSEPT-DESVEEGVKLAKEGGCDVIIALG 88 (375)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 455678999 57788899999999999888874
No 150
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=20.96 E-value=1.7e+02 Score=25.25 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 029748 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (188)
Q Consensus 2 F~~~~P~P~~~~~l~~l~~~v~~~~adlgi~~D 34 (188)
|....|||. .+.++++.+.+++.++|+.|++=
T Consensus 58 ~~~v~~~p~-~~~v~~~~~~~~~~~~d~IIaiG 89 (370)
T cd08192 58 FDEVPPNPT-EAAVEAGLAAYRAGGCDGVIAFG 89 (370)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 444668999 56788888999999999988874
No 151
>PRK08638 threonine dehydratase; Validated
Probab=20.07 E-value=5.3e+02 Score=21.99 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=29.5
Q ss_pred CeEEEcCcCCHHHHHHHHHcCCcEEEEecchHHHHHHHH
Q 029748 70 TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGV 108 (188)
Q Consensus 70 ~~vv~~v~ss~~le~ia~~~g~~v~~t~vG~~~v~~~~~ 108 (188)
-.|++|-.+|..-....+.+|++|+.++..+..-.+.+.
T Consensus 101 ~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~ 139 (333)
T PRK08638 101 GKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVE 139 (333)
T ss_pred EEEEeCCCCcHHHHHHHHHcCCEEEEECcCHHHHHHHHH
Confidence 468889888888788899999999999766554333333
Done!