BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029749
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 26 EEESLMLEGDIGGGLILQRKLTIPKDNPKIFKIDSKILAGRVGAGSGGFSRLVCLRVHPM 85
EEES + + L+L+R + K P +FK +I+ G G G+ +++ + HP+
Sbjct: 15 EEESPIAPHRLFKALVLERHQVLVKAQPHVFK-SGEIIEGDGGVGT--VTKITFVDGHPL 71
Query: 86 FTLLHPTKSFISFTSIDGS 104
+LH F ID +
Sbjct: 72 TYMLH------KFDEIDAA 84
>pdb|1F5P|A Chain A, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|B Chain B, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|C Chain C, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|D Chain D, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|E Chain E, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|F Chain F, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5O|A Chain A, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|B Chain B, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|C Chain C, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|D Chain D, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|E Chain E, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|F Chain F, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
Length = 149
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 52 NPKIFKIDSKILAGRVGAGSGGFSRLVCL 80
+P+ FK+ + ++A V AG GF +L+ +
Sbjct: 112 DPQYFKVLAAVIADTVAAGDAGFEKLMSM 140
>pdb|1UC3|A Chain A, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|B Chain B, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|C Chain C, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|D Chain D, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|E Chain E, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|F Chain F, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|G Chain G, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|H Chain H, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|I Chain I, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|J Chain J, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|K Chain K, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|L Chain L, Crystal Structure Of Hemoglobini From River Lamprey
Length = 149
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 52 NPKIFKIDSKILAGRVGAGSGGFSRLVCL 80
+P+ FK+ + ++A V AG GF +L+ +
Sbjct: 112 DPQYFKVLAAVIADTVAAGDAGFEKLMSM 140
>pdb|3LHB|A Chain A, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|B Chain B, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|C Chain C, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|D Chain D, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|E Chain E, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|F Chain F, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|G Chain G, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|H Chain H, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|I Chain I, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|J Chain J, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|K Chain K, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|L Chain L, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
Length = 149
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 52 NPKIFKIDSKILAGRVGAGSGGFSRLVCL 80
+P+ FK+ + ++A V AG GF +L+ +
Sbjct: 112 DPEYFKVLAAVIADTVAAGDAGFEKLMSM 140
>pdb|2LHB|A Chain A, Refinement Of A Molecular Model For Lamprey Hemoglobin
From Petromyzon Marinus
Length = 150
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 52 NPKIFKIDSKILAGRVGAGSGGFSRLVCL 80
+P+ FK+ + ++A V AG GF +L+ +
Sbjct: 113 DPEYFKVLAAVIADTVAAGDAGFEKLMSM 141
>pdb|2FXT|A Chain A, Crystal Structure Of Yeast Tim44
Length = 192
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 42 LQRKLTIPKDNPKIFKIDSKILAGRVGAGSGGFSRLVCLRVHPMFTLLHPTKSFISFTSI 101
L+ KL +NP I + + + +VG G F+ RV+ F L+ PT S SFT
Sbjct: 5 LKNKLWDESENPLIVVM--RKITNKVG---GFFAETESSRVYSQFKLMDPTFSNESFTR- 58
Query: 102 DGSKQEIWPESGEQFYGGNLLPNGEW 127
++ I PE E + G++ +W
Sbjct: 59 -HLREYIVPEILEAYVKGDVKVLKKW 83
>pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound
Acivicin
Length = 273
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 77 LVCLRVHPMF--TLLHPTKSFISFTSIDGSKQEIWPESGEQ 115
+ ++ HP F T + P +++SF + K +WP+ Q
Sbjct: 227 FLAVQFHPEFISTPMDPAPTYLSFMAAAAKKDYVWPQKCSQ 267
>pdb|3QK9|A Chain A, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3
pdb|3QK9|B Chain B, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3
Length = 222
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 42 LQRKLTIPKDNPKIFKIDSKILAGRVGAGSGGFSRLVCLRVHPMFTLLHPTKSFISFTSI 101
L+ KL +NP I + + + +VG G F+ RV+ F L+ PT S SFT
Sbjct: 29 LKNKLWDESENPLIVVM--RKITNKVG---GFFAETESSRVYSQFKLMDPTFSNESFTR- 82
Query: 102 DGSKQEIWPESGEQFYGGNLLPNGEW 127
++ I PE E + G++ +W
Sbjct: 83 -HLREYIVPEILEAYVKGDVKVLKKW 107
>pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta
(Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A
Resolution
Length = 417
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 134 QGLALVNRFNVEEVFKCFIHWGTGTVNLELWSEQRPVSKQ 173
Q +A++ R+ EE +C IH G + L LW + P++ +
Sbjct: 317 QTIAIIRRYLSEE--RCLIHKPEGAIFLWLWFKDLPITTE 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,107,344
Number of Sequences: 62578
Number of extensions: 268093
Number of successful extensions: 618
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 10
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)