BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029749
         (188 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7GMS5|Y1107_BACCN UPF0753 protein Bcer98_1107 OS=Bacillus cereus subsp. cytotoxis
           (strain NVH 391-98) GN=Bcer98_1107 PE=3 SV=1
          Length = 874

 Score = 31.6 bits (70), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 126 EWMLVDKCQGLALVN-----RFNVEEVFKCFIHWGTGTVNLELWSEQRPVSKQSPLAISH 180
           EW +V+    L+LVN     + ++  +   +IHWG   +++E WS+     +   L+I+H
Sbjct: 296 EWAIVNPY--LSLVNHRLKKKVSIVPLLASWIHWGD--LSIEEWSQMSATEQNELLSIAH 351

Query: 181 EYE 183
            ++
Sbjct: 352 HFD 354


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.143    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,513,141
Number of Sequences: 539616
Number of extensions: 3369392
Number of successful extensions: 7765
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7765
Number of HSP's gapped (non-prelim): 1
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)