Query 029749
Match_columns 188
No_of_seqs 22 out of 24
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 03:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02763 hydrolase, hydrolyzin 100.0 1.3E-99 3E-104 731.0 17.6 178 10-187 801-978 (978)
2 PF14486 DUF4432: Domain of un 79.5 31 0.00067 30.2 10.5 130 26-163 108-266 (302)
3 PF04189 Gcd10p: Gcd10p family 55.3 7.9 0.00017 34.5 1.9 81 81-162 155-242 (299)
4 PRK02250 hypothetical protein; 41.9 42 0.00092 27.4 4.0 54 75-134 71-127 (166)
5 PF12647 RNHCP: RNHCP domain; 40.9 16 0.00035 28.3 1.4 16 121-136 58-73 (92)
6 cd00655 RNAP_Rpb7_N_like RNAP_ 36.2 44 0.00095 24.0 2.9 32 130-162 37-68 (80)
7 PF08242 Methyltransf_12: Meth 35.0 11 0.00024 25.6 -0.3 49 67-128 3-51 (99)
8 PF12859 Apc1: Anaphase-promot 34.6 39 0.00085 25.1 2.6 29 24-52 17-51 (105)
9 PF09282 Mago-bind: Mago bindi 34.0 22 0.00048 22.5 0.9 16 113-128 1-16 (27)
10 PHA02580 8 baseplate wedge sub 33.3 41 0.00088 31.3 2.9 65 58-123 250-314 (331)
11 cd04330 RNAP_III_Rpc25_N RNAP_ 31.8 58 0.0013 23.4 3.0 32 130-162 37-68 (80)
12 PRK02710 plastocyanin; Provisi 31.7 2.2E+02 0.0048 21.3 6.3 66 80-155 42-109 (119)
13 cd01901 Ntn_hydrolase The Ntn 31.3 1.4E+02 0.0031 20.9 4.9 40 29-70 3-49 (164)
14 PF01483 P_proprotein: Proprot 28.8 1.9E+02 0.0042 20.0 5.1 45 85-130 7-67 (87)
15 PTZ00391 transport protein par 27.2 37 0.0008 28.2 1.5 31 108-143 70-104 (168)
16 PRK01752 hypothetical protein; 27.0 1.3E+02 0.0028 24.7 4.6 53 75-134 76-131 (156)
17 PRK00112 tgt queuine tRNA-ribo 27.0 38 0.00083 30.6 1.6 59 70-136 91-150 (366)
18 COG3012 Uncharacterized protei 26.8 1.5E+02 0.0033 25.0 5.0 53 75-133 73-128 (151)
19 PRK01617 hypothetical protein; 26.6 1E+02 0.0023 25.1 3.9 55 75-134 73-131 (154)
20 PF07385 DUF1498: Protein of u 26.5 83 0.0018 27.9 3.5 66 94-180 67-143 (225)
21 TIGR00090 iojap_ybeB iojap-lik 26.4 60 0.0013 24.2 2.3 25 117-145 64-88 (99)
22 PF14849 YidC_periplas: YidC p 25.4 2E+02 0.0043 23.4 5.4 50 14-66 72-123 (270)
23 PRK13692 (3R)-hydroxyacyl-ACP 23.8 1.7E+02 0.0038 23.1 4.6 40 37-76 117-156 (159)
24 PRK11188 rrmJ 23S rRNA methylt 23.5 30 0.00065 28.1 0.3 17 66-82 57-73 (209)
25 KOG3646 Acetylcholine receptor 23.2 40 0.00086 32.8 1.1 23 120-143 194-216 (486)
26 PF06658 DUF1168: Protein of u 23.2 27 0.00057 28.6 -0.1 13 62-74 26-38 (142)
27 PF03703 bPH_2: Bacterial PH d 23.2 30 0.00064 22.6 0.2 34 38-71 17-50 (80)
28 KOG3416 Predicted nucleic acid 23.0 85 0.0018 26.1 2.8 25 144-168 35-59 (134)
29 PF12757 DUF3812: Protein of u 22.6 32 0.00068 27.0 0.2 9 35-43 62-70 (126)
30 PRK11538 ribosome-associated p 22.5 74 0.0016 24.3 2.2 21 123-145 73-93 (105)
31 PF09079 Cdc6_C: CDC6, C termi 22.3 81 0.0018 21.9 2.2 24 62-85 55-79 (85)
32 KOG4202 Phosphoribosylanthrani 21.9 29 0.00063 30.8 -0.1 40 95-148 141-180 (227)
33 PF02410 Oligomerisation: Olig 21.7 84 0.0018 23.1 2.3 61 77-144 17-88 (100)
34 cd01778 RASSF1_RA Ubiquitin-li 21.2 69 0.0015 24.9 1.8 22 46-67 11-32 (96)
No 1
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=1.3e-99 Score=731.03 Aligned_cols=178 Identities=70% Similarity=1.186 Sum_probs=176.5
Q ss_pred hcceeeeeeehhhcCCCeeeEEEeeeccccEEEEEEeeccCCCCceEEEeceeEeeeeccCCCCcceeEEEEeecceEee
Q 029749 10 FYHLFFCCRRSLQHGGEEESLMLEGDIGGGLILQRKLTIPKDNPKIFKIDSKILAGRVGAGSGGFSRLVCLRVHPMFTLL 89 (188)
Q Consensus 10 ~~e~Y~Vi~R~l~~~~~eE~l~LEGDIGGGLVL~R~Isi~kd~p~i~~I~SsI~ARsVGAGSGGFSRLvcLRVhPtF~l~ 89 (188)
.|||||||+|+|+|+++||+|+|||||||||||+|+|+|||||||+++|||||+|||||||||||||||||||||+|+|+
T Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (978)
T PLN02763 801 CTEEYKVVERDLEQAGGEESLGLEGDIGGGLVLAREISIPKDSPKVVKISSSIVARSVGAGSGGFSRLVCLRVHPTFKLL 880 (978)
T ss_pred CchhHHHHHHHHHHcCCceeEEeeecccCcEEEEEEeecccCCCceEEEeeeeEEeecccCCCCcceeEEEEeccceeec
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEEeeeCCceeecCCCcceeeecCCCCCceEEEEecccceeEEeeecccceeeEEEEEcCCeeeeeecccccC
Q 029749 90 HPTKSFISFTSIDGSKQEIWPESGEQFYGGNLLPNGEWMLVDKCQGLALVNRFNVEEVFKCFIHWGTGTVNLELWSEQRP 169 (188)
Q Consensus 90 HPtes~V~FTaidGsk~El~p~~gE~~~eG~~rPNGEWmLvDk~~glalVNrFdv~eV~kC~vhWg~g~vnlELWSeeRp 169 (188)
|||||||+||||||+|||+||++||++|||++||||||||||||+|||||||||++||+||+||||||+|||||||||||
T Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (978)
T PLN02763 881 HPTESFVSFTAIDGSKHELWPEFGEQFYEGNDRPNGEWMLVDKETGLAVVNRFDVKEVEKCHVHWGPGTVNLELWSEERP 960 (978)
T ss_pred CccceeEEEEeccCcccccCCcccceeeecCCCCCceEEEEecccceeEEeecChhheEEEEEEecCCceeeeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeEeeeeeEEec
Q 029749 170 VSKQSPLAISHEYEVIKI 187 (188)
Q Consensus 170 VSk~tPl~IsH~Yev~~~ 187 (188)
|||||||+|||+||||++
T Consensus 961 ~~~~~~~~~~~~~~~~~~ 978 (978)
T PLN02763 961 VSKETPLSISHEYEVIDT 978 (978)
T ss_pred cccCCCceEeeeeEEecC
Confidence 999999999999999985
No 2
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=79.51 E-value=31 Score=30.16 Aligned_cols=130 Identities=22% Similarity=0.338 Sum_probs=68.4
Q ss_pred CeeeEEEeeec------cccEEEEEEeeccCCCCceEEEeceeEeeeeccCCCCcceeEEEEeecce---------Eeec
Q 029749 26 EEESLMLEGDI------GGGLILQRKLTIPKDNPKIFKIDSKILAGRVGAGSGGFSRLVCLRVHPMF---------TLLH 90 (188)
Q Consensus 26 ~eE~l~LEGDI------GGGLVL~R~Isi~kd~p~i~~I~SsI~ARsVGAGSGGFSRLvcLRVhPtF---------~l~H 90 (188)
+.-.+.++|.+ |-=|.|+|.|++..+++.+ .|.-+|.=++- ..-=-.+--|+.| .+..
T Consensus 108 ~~~~i~v~G~v~~~~~fg~~l~l~r~i~~~~g~~~i-~i~d~VtN~~~------~p~p~m~lyH~N~G~pll~eg~ri~~ 180 (302)
T PF14486_consen 108 DGYEIEVSGEVREAAGFGENLRLERTIRLRAGSNTI-RIEDRVTNLGF------QPMPLMYLYHMNFGYPLLDEGARIVA 180 (302)
T ss_dssp TT--EEEEEEEEEEETTTEEEEEEEEEEE-TT-SEE-EEEEEEEE-SS------S-EEEEEEEEEEE-TTT-STT-EEE-
T ss_pred CCcEEEEEEEEEEEEeccCcEEEEEEEEEECCCcEE-EEEEEEEECCC------CCchhHHhhhhccCccccCCCcEEEc
Confidence 34467777765 5679999999999998866 77777765531 1112223334222 2334
Q ss_pred CcceEEEEEe---eeCCceee--cCC--CcceeeecCCCC--Cce--EEEEecccceeEEeeecccceeeEEEEEc---C
Q 029749 91 PTKSFISFTS---IDGSKQEI--WPE--SGEQFYGGNLLP--NGE--WMLVDKCQGLALVNRFNVEEVFKCFIHWG---T 156 (188)
Q Consensus 91 Ptes~V~FTa---idGsk~El--~p~--~gE~~~eG~~rP--NGE--WmLvDk~~glalVNrFdv~eV~kC~vhWg---~ 156 (188)
|++...-+.+ -+...... -|. .-|++|--++++ +|. =||+.+..|+++.=+||.++. .|+..|- .
T Consensus 181 p~~~~~~~~~~a~~~~~~~~~~~~P~~~~~E~Vy~~~~~~d~~G~~~~~l~n~~~g~g~~v~f~~~~l-P~~~~Wk~~~~ 259 (302)
T PF14486_consen 181 PTKEVTPRDDRAAEGIADWDRMPAPQPGFPEQVYFHDLLADEDGWAHAALVNPDGGLGFEVRFDTSQL-PYLTQWKNYGG 259 (302)
T ss_dssp -EEEEEESSGGGGGGSTTTTB---S-TT---EEEEEEE---TTSEEEEEEE-SSSS-EEEEEEETTTS--EEEEEEEES-
T ss_pred CcccccCCchhhhcCCccceecCCCCCCCCcEEEEecccccCCCcEEEEEECCCCCcEEEEEEchHHC-ChhHhheeCCC
Confidence 4544444432 11111112 222 578999888886 665 689999999999999999886 4566663 3
Q ss_pred Ceeeeee
Q 029749 157 GTVNLEL 163 (188)
Q Consensus 157 g~vnlEL 163 (188)
+.-.+-|
T Consensus 260 ~~yv~gL 266 (302)
T PF14486_consen 260 GEYVLGL 266 (302)
T ss_dssp T-EEEEE
T ss_pred CEeEEEE
Confidence 5544444
No 3
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=55.27 E-value=7.9 Score=34.47 Aligned_cols=81 Identities=23% Similarity=0.335 Sum_probs=57.0
Q ss_pred EeecceEeecCcceEEE---EEeeeCCceeecCC-CcceeeecCCCCCceEEEEecccce---eEEeeecccceeeEEEE
Q 029749 81 RVHPMFTLLHPTKSFIS---FTSIDGSKQEIWPE-SGEQFYGGNLLPNGEWMLVDKCQGL---ALVNRFNVEEVFKCFIH 153 (188)
Q Consensus 81 RVhPtF~l~HPtes~V~---FTaidGsk~El~p~-~gE~~~eG~~rPNGEWmLvDk~~gl---alVNrFdv~eV~kC~vh 153 (188)
+--+.|+++-|+-..+. |.---.+-.++++| -|-.---+|-+|+|.|++||.|.|| |+..|-.- +-..|.+|
T Consensus 155 Ky~~~ftv~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg-~G~i~~~~ 233 (299)
T PF04189_consen 155 KYLKRFTVLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGG-SGNIITLH 233 (299)
T ss_pred hhhceEEEeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCC-CceEEEEe
Confidence 44567788888765442 22222444567776 5666677999999999999999998 66777766 56778888
Q ss_pred EcCCeeeee
Q 029749 154 WGTGTVNLE 162 (188)
Q Consensus 154 Wg~g~vnlE 162 (188)
.+..--|+.
T Consensus 234 ~~~~~p~~~ 242 (299)
T PF04189_consen 234 HGNSPPNLD 242 (299)
T ss_pred eCCCCCCHH
Confidence 887755544
No 4
>PRK02250 hypothetical protein; Provisional
Probab=41.86 E-value=42 Score=27.44 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=33.4
Q ss_pred ceeEEEEeecceEeecCcceEEEEEe---eeCCceeecCCCcceeeecCCCCCceEEEEeccc
Q 029749 75 SRLVCLRVHPMFTLLHPTKSFISFTS---IDGSKQEIWPESGEQFYGGNLLPNGEWMLVDKCQ 134 (188)
Q Consensus 75 SRLvcLRVhPtF~l~HPtes~V~FTa---idGsk~El~p~~gE~~~eG~~rPNGEWmLvDk~~ 134 (188)
.+-..|+|+-+-.-....+.+|.|.| .+|..+.+. |-..+.- -||.|.-||-..
T Consensus 71 ~~w~~LeI~~~~~g~~~~~g~VeF~A~y~~~g~~~~~~-E~S~F~r-----~~g~W~Yvdg~~ 127 (166)
T PRK02250 71 SDWLKLEVIKTEAGSTPNEGFVEFKAYFDEEGKRYCLE-ERSRFLK-----ENGLWYYIDGTF 127 (166)
T ss_pred ceeeccEEEEecCCCCCceEEEEEEEEEecCCCEEEEE-EEEEEEe-----eCCEEEecCCCc
Confidence 35566777644333455788999998 566655443 3233332 379999999643
No 5
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=40.89 E-value=16 Score=28.31 Aligned_cols=16 Identities=31% Similarity=0.991 Sum_probs=13.2
Q ss_pred CCCCceEEEEecccce
Q 029749 121 LLPNGEWMLVDKCQGL 136 (188)
Q Consensus 121 ~rPNGEWmLvDk~~gl 136 (188)
.+.+||||||-.|+.=
T Consensus 58 ~~~~g~w~iiHrC~~C 73 (92)
T PF12647_consen 58 VRRDGEWMIIHRCTRC 73 (92)
T ss_pred EEcCCCEEEEEecCCC
Confidence 4679999999998753
No 6
>cd00655 RNAP_Rpb7_N_like RNAP_Rpb7_N_like: This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of the Rpb7 subunit of eukaryotic RNA polymerase (RNAP) II and its homologs, Rpa43 of eukaryotic RNAP I, Rpc25 of eukaryotic RNAP III, and RpoE (subunit E) of archaeal RNAP. These proteins have, in addition to their N-terminal RNP domain, a C-terminal oligonucleotide-binding (OB) domain. Each of these subunits heterodimerizes with another RNAP subunit (Rpb7 to Rpb4, Rpc25 to Rpc17, RpoE to RpoF, and Rpa43 to Rpa14). The heterodimer is thought to tether the RNAP to a given promoter via its interactions with a promoter-bound transcription factor.The heterodimer is also thought to bind and position nascent RNA as it exits the polymerase complex.
Probab=36.23 E-value=44 Score=23.99 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=26.8
Q ss_pred EecccceeEEeeecccceeeEEEEEcCCeeeee
Q 029749 130 VDKCQGLALVNRFNVEEVFKCFIHWGTGTVNLE 162 (188)
Q Consensus 130 vDk~~glalVNrFdv~eV~kC~vhWg~g~vnlE 162 (188)
+++..|+ +|--+|+.++..+.|.+|+|.+..+
T Consensus 37 v~~~~G~-~v~v~di~~i~~G~I~~gdG~~~~~ 68 (80)
T cd00655 37 RTPVVGI-ILAIKDTKDIPEGAIRPGDGSAYVN 68 (80)
T ss_pred EeCCccE-EEEEEEeEEEcCCEEECCCCCEEEE
Confidence 6677788 5677899999999999999987654
No 7
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=35.04 E-value=11 Score=25.64 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=26.5
Q ss_pred eccCCCCcceeEEEEeecceEeecCcceEEEEEeeeCCceeecCCCcceeeecCCCCCceEE
Q 029749 67 VGAGSGGFSRLVCLRVHPMFTLLHPTKSFISFTSIDGSKQEIWPESGEQFYGGNLLPNGEWM 128 (188)
Q Consensus 67 VGAGSGGFSRLvcLRVhPtF~l~HPtes~V~FTaidGsk~El~p~~gE~~~eG~~rPNGEWm 128 (188)
+|+|+|-+++...-+. ....+|++|-+..-+ +...+-+......+-++.
T Consensus 3 iGcG~G~~~~~l~~~~-----------~~~~~~~~D~s~~~l--~~a~~~~~~~~~~~~~~~ 51 (99)
T PF08242_consen 3 IGCGTGRLLRALLEEL-----------PDARYTGVDISPSML--ERARERLAELGNDNFERL 51 (99)
T ss_dssp ESTTTS-TTTTHHHHC------------EEEEEEEESSSSTT--STTCCCHHHCT---EEEE
T ss_pred eCccChHHHHHHHHhC-----------CCCEEEEEECCHHHH--HHHHHHhhhcCCcceeEE
Confidence 7999999886543221 456788888887766 333344444443333333
No 8
>PF12859 Apc1: Anaphase-promoting complex subunit 1
Probab=34.64 E-value=39 Score=25.11 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=21.3
Q ss_pred CCCeeeEEEeeecc------ccEEEEEEeeccCCC
Q 029749 24 GGEEESLMLEGDIG------GGLILQRKLTIPKDN 52 (188)
Q Consensus 24 ~~~eE~l~LEGDIG------GGLVL~R~Isi~kd~ 52 (188)
.|+.-.+.|-..|. -||+|||+..-...+
T Consensus 17 ~G~~~~v~LPF~V~~~~~~~~GlLLqR~~~~~~~~ 51 (105)
T PF12859_consen 17 SGESYTVPLPFEVSSAWPLPRGLLLQRKPESSEPS 51 (105)
T ss_pred CCCEEEEEeceEeeEEeccCCEEEEEEccCCCccc
Confidence 47777788777765 499999998754333
No 9
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=34.02 E-value=22 Score=22.47 Aligned_cols=16 Identities=31% Similarity=0.767 Sum_probs=9.0
Q ss_pred cceeeecCCCCCceEE
Q 029749 113 GEQFYGGNLLPNGEWM 128 (188)
Q Consensus 113 gE~~~eG~~rPNGEWm 128 (188)
||-++-++.||+|.|.
T Consensus 1 Ger~I~~s~RpDGt~R 16 (27)
T PF09282_consen 1 GERIIPASQRPDGTWR 16 (27)
T ss_dssp --EEE--EE-TTS-EE
T ss_pred CccCcCcccCCCCCcc
Confidence 6788899999999996
No 10
>PHA02580 8 baseplate wedge subunit; Provisional
Probab=33.30 E-value=41 Score=31.28 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=55.1
Q ss_pred EeceeEeeeeccCCCCcceeEEEEeecceEeecCcceEEEEEeeeCCceeecCCCcceeeecCCCC
Q 029749 58 IDSKILAGRVGAGSGGFSRLVCLRVHPMFTLLHPTKSFISFTSIDGSKQEIWPESGEQFYGGNLLP 123 (188)
Q Consensus 58 I~SsI~ARsVGAGSGGFSRLvcLRVhPtF~l~HPtes~V~FTaidGsk~El~p~~gE~~~eG~~rP 123 (188)
+||----..-+-|-=||-.| .+=..|.-+-.||++.-|+-|...=..++|.|.|||+.|-.|-+|
T Consensus 250 lds~~Fp~~~lpGNkGfRQi-Sii~nPl~~k~~p~d~~vKAt~~~Y~p~~le~~SGemIYmENRqp 314 (331)
T PHA02580 250 LDSVYFPEASLPGNKGFRQI-SIILNPLEKKAHPADPDVKATKDYYDPEDLERHSGEMIYMENRQP 314 (331)
T ss_pred cccccccccccCCCCCceEE-EEecChhhhhcCCCCccccccccccCHHHhccCCCcEEEEecCcc
Confidence 45555555667788899555 566889999999999999999999999999999999999988877
No 11
>cd04330 RNAP_III_Rpc25_N RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP domain and a C-terminal oligonucleotide-binding (OB) domain, both of which are thought to bind single-stranded RNA. Rpc25 heterodimerizes with Rpc17 and plays an important role in transcription initiation. RNAP III transcribes diverse structural and catalytic RNAs including 5S ribosomal RNAs, tRNAs, and a small number of snRNAs involved in RNA and protein synthesis.
Probab=31.85 E-value=58 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=27.0
Q ss_pred EecccceeEEeeecccceeeEEEEEcCCeeeee
Q 029749 130 VDKCQGLALVNRFNVEEVFKCFIHWGTGTVNLE 162 (188)
Q Consensus 130 vDk~~glalVNrFdv~eV~kC~vhWg~g~vnlE 162 (188)
+++..|| +|--+|+.+++.+.|.+|+|.+..+
T Consensus 37 v~~~~Gl-~v~v~di~~i~eG~I~~gdG~~~~~ 68 (80)
T cd04330 37 VIQNVGL-CICLYDILEVEDGYILPGDGASHYK 68 (80)
T ss_pred EeCCccE-EEEEEEeEEEcCCEEECCCCCEEEE
Confidence 7777888 6678899999999999999987654
No 12
>PRK02710 plastocyanin; Provisional
Probab=31.71 E-value=2.2e+02 Score=21.31 Aligned_cols=66 Identities=12% Similarity=0.215 Sum_probs=44.0
Q ss_pred EEeecceEeecCcceEEEEEeeeCCceeecCCCcceeeec--CCCCCceEEEEecccceeEEeeecccceeeEEEEEc
Q 029749 80 LRVHPMFTLLHPTKSFISFTSIDGSKQEIWPESGEQFYGG--NLLPNGEWMLVDKCQGLALVNRFNVEEVFKCFIHWG 155 (188)
Q Consensus 80 LRVhPtF~l~HPtes~V~FTaidGsk~El~p~~gE~~~eG--~~rPNGEWmLvDk~~glalVNrFdv~eV~kC~vhWg 155 (188)
++..|.-.-+.|-+. |+|+..|+..|.+-++.++..... ..-|+.+|-+.-+..|.- .+.|..|..
T Consensus 42 ~~F~P~~i~v~~Gd~-V~~~N~~~~~H~v~~~~~~~~~~~~~~~~pg~t~~~tF~~~G~y---------~y~C~~H~~ 109 (119)
T PRK02710 42 LAFEPSTLTIKAGDT-VKWVNNKLAPHNAVFDGAKELSHKDLAFAPGESWEETFSEAGTY---------TYYCEPHRG 109 (119)
T ss_pred eEEeCCEEEEcCCCE-EEEEECCCCCceEEecCCccccccccccCCCCEEEEEecCCEEE---------EEEcCCCcc
Confidence 466787777778775 899988888999987765433222 245666777766655432 357887764
No 13
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=31.27 E-value=1.4e+02 Score=20.87 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred eEEEeeeccccEEEEEEeec-------cCCCCceEEEeceeEeeeeccC
Q 029749 29 SLMLEGDIGGGLILQRKLTI-------PKDNPKIFKIDSKILAGRVGAG 70 (188)
Q Consensus 29 ~l~LEGDIGGGLVL~R~Isi-------~kd~p~i~~I~SsI~ARsVGAG 70 (188)
.+.+.++ +|.||+++-.+ ..+..|+.+|+..+..=..|..
T Consensus 3 ~i~i~~~--~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~ 49 (164)
T cd01901 3 SVAIKGK--GGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLA 49 (164)
T ss_pred EEEEEeC--CEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecCh
Confidence 4667777 99999998665 4455788888866655444433
No 14
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=28.84 E-value=1.9e+02 Score=20.01 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=24.5
Q ss_pred ceEeecCc--ceEEEEEeeeCCceeecCCCcc-------ee-------eecCCCCCceEEEE
Q 029749 85 MFTLLHPT--KSFISFTSIDGSKQEIWPESGE-------QF-------YGGNLLPNGEWMLV 130 (188)
Q Consensus 85 tF~l~HPt--es~V~FTaidGsk~El~p~~gE-------~~-------~eG~~rPNGEWmLv 130 (188)
++.+-||. +--|.-+|.+|+.-.|+...+. .. |-| .-|+|.|.|.
T Consensus 7 ~v~i~H~~~gdL~i~L~SP~Gt~~~L~~~~~~d~~~~~~~~~~f~~~~f~G-e~~~G~W~L~ 67 (87)
T PF01483_consen 7 SVDITHPYRGDLRITLISPSGTRSTLKDRRGSDDSGSGFLNWTFTSVAFWG-ESANGTWTLR 67 (87)
T ss_dssp EEEEEESSGGGEEEEEE-TT--EEEEE-SSTTHHHSTSEEEEEEEESTTTT--B--EEEEEE
T ss_pred EEEEEcCCcCCEEEEEECCCCCEEEEECCcCCCcccccccccEEEEEeecC-ccCCCEEEEE
Confidence 45566664 5567788899999999886443 11 122 2579999984
No 15
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=27.17 E-value=37 Score=28.24 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=20.2
Q ss_pred ecCC-CcceeeecCCCCC---ceEEEEecccceeEEeeec
Q 029749 108 IWPE-SGEQFYGGNLLPN---GEWMLVDKCQGLALVNRFN 143 (188)
Q Consensus 108 l~p~-~gE~~~eG~~rPN---GEWmLvDk~~glalVNrFd 143 (188)
+|.. +|.+. -+++.| ||+||+|+. -++|+|=
T Consensus 70 ~W~~lFgk~a--D~Lkt~d~~~~Y~i~Dn~---~~~~~~i 104 (168)
T PTZ00391 70 VWKYLFGHSS--DLLKSQDSDDEYMINDKN---LLLNKFI 104 (168)
T ss_pred HHHHHhCchh--hhhcccCCCCeEEEEeCc---hhheeee
Confidence 4443 45443 245555 999999998 3788773
No 16
>PRK01752 hypothetical protein; Provisional
Probab=27.00 E-value=1.3e+02 Score=24.74 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=33.5
Q ss_pred ceeEEEEeecceEeecCcceEEEEEe---eeCCceeecCCCcceeeecCCCCCceEEEEeccc
Q 029749 75 SRLVCLRVHPMFTLLHPTKSFISFTS---IDGSKQEIWPESGEQFYGGNLLPNGEWMLVDKCQ 134 (188)
Q Consensus 75 SRLvcLRVhPtF~l~HPtes~V~FTa---idGsk~El~p~~gE~~~eG~~rPNGEWmLvDk~~ 134 (188)
.+-..|.|+-+= =..+.+.+|.|+| .+|..+.+.-.| .+. |-||.|+-||-..
T Consensus 76 ~~W~~LeI~~~~-~~~~~~g~VeF~A~y~~~g~~~~~hE~S-~F~-----r~~g~W~YvDG~~ 131 (156)
T PRK01752 76 TTWLGLEILAHE-SLTKIHSAVEFKAIFQGEEGEQAHHERS-LFV-----KIDNRWYFVDPTV 131 (156)
T ss_pred CeEeeeEEEecc-CCCCceEEEEEEEEEecCCCccccchhh-hhe-----eccCCEEEecCCC
Confidence 566677775544 2344778899988 566665544332 222 3479999999644
No 17
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=26.97 E-value=38 Score=30.63 Aligned_cols=59 Identities=32% Similarity=0.428 Sum_probs=37.2
Q ss_pred CCCCcceeEEEEeecceEeecCcceEEEEEee-eCCceeecCCCcceeeecCCCCCceEEEEecccce
Q 029749 70 GSGGFSRLVCLRVHPMFTLLHPTKSFISFTSI-DGSKQEIWPESGEQFYGGNLLPNGEWMLVDKCQGL 136 (188)
Q Consensus 70 GSGGFSRLvcLRVhPtF~l~HPtes~V~FTai-dGsk~El~p~~gE~~~eG~~rPNGEWmLvDk~~gl 136 (188)
-|||| .+..|. ++...+|.=|.|.+. ||+++++-|+.--++-+ ...| .=+|-+|-|++.
T Consensus 91 DSGgf-Q~~sl~-----~~~~~~~~Gv~f~s~~~G~~~~ltpe~~~~~q~-~ig~-DI~~~LD~~~~~ 150 (366)
T PRK00112 91 DSGGF-QVFSLS-----DLRKITEEGVTFRSHIDGSKHFLTPEKSMEIQY-DLGS-DIVMAFDECPPY 150 (366)
T ss_pred ccCcc-eeeecc-----ccccCCCCceEEecCCCCceEEeCHHHHHHHHH-HhCC-CEEEECCcCCCC
Confidence 48888 444443 344667888888775 99999999983322211 1111 247777888765
No 18
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.79 E-value=1.5e+02 Score=25.01 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=36.0
Q ss_pred ceeEEEEeecceEeecCcceEEEEEeee--CC-ceeecCCCcceeeecCCCCCceEEEEecc
Q 029749 75 SRLVCLRVHPMFTLLHPTKSFISFTSID--GS-KQEIWPESGEQFYGGNLLPNGEWMLVDKC 133 (188)
Q Consensus 75 SRLvcLRVhPtF~l~HPtes~V~FTaid--Gs-k~El~p~~gE~~~eG~~rPNGEWmLvDk~ 133 (188)
++-..|.|.-+=.+-+|++++|+|+|.= +. .+-+--.|+ =.+-||.|..||..
T Consensus 73 t~wlGL~I~~h~~~~~~~~~~VeF~A~f~~~~~~~a~~ErSr------Fvk~ngrWyyiDgt 128 (151)
T COG3012 73 TEWLGLTIIEHTGLGAPNHGFVEFVARFKGGGKTGAHHERSR------FVKINGRWYYIDGT 128 (151)
T ss_pred ceEeeEEEEEeccCCCCcceeEEEEEEEccCCccchhhhhhh------heEECCEEEEECCC
Confidence 5677889998888999999999999961 11 111111122 23457999999864
No 19
>PRK01617 hypothetical protein; Provisional
Probab=26.62 E-value=1e+02 Score=25.08 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=31.1
Q ss_pred ceeEEEEeecceEeecCcceEEEEEe---eeCCcee-ecCCCcceeeecCCCCCceEEEEeccc
Q 029749 75 SRLVCLRVHPMFTLLHPTKSFISFTS---IDGSKQE-IWPESGEQFYGGNLLPNGEWMLVDKCQ 134 (188)
Q Consensus 75 SRLvcLRVhPtF~l~HPtes~V~FTa---idGsk~E-l~p~~gE~~~eG~~rPNGEWmLvDk~~ 134 (188)
.+-..|.|..+=.-....+.+|.|.| .+|..+. ..-|-..+.- -+|.|.-||-..
T Consensus 73 ~~w~~L~Il~~~~g~~~~~g~VeF~A~y~~~g~~~~~~~~ErS~F~r-----~~g~W~Yvdg~~ 131 (154)
T PRK01617 73 TEWLGLTVFEHTWGDADNEGFVEFVARFTEGGKTGRTAIIERSRFLK-----ENGQWYYIDGTR 131 (154)
T ss_pred CEEeccEEEEecCCCCCceEEEEEEEEEecCCccccceEEEeeeeEE-----eCCCEEecCCCC
Confidence 34445555433323445778899988 5565541 2223233333 369999999544
No 20
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=26.47 E-value=83 Score=27.85 Aligned_cols=66 Identities=18% Similarity=0.411 Sum_probs=35.6
Q ss_pred eEEEEEeeeCCceeecCCCcceeeecCCCCCceEEEEecccceeEEeeecccceeeEEEEE---------cCCeeeeeec
Q 029749 94 SFISFTSIDGSKQEIWPESGEQFYGGNLLPNGEWMLVDKCQGLALVNRFNVEEVFKCFIHW---------GTGTVNLELW 164 (188)
Q Consensus 94 s~V~FTaidGsk~El~p~~gE~~~eG~~rPNGEWmLvDk~~glalVNrFdv~eV~kC~vhW---------g~g~vnlELW 164 (188)
-+..||-.||+.... +.-.|=-|=+|+-+ -.|++-++.|| |.|++-++||
T Consensus 67 GL~LfTlRNG~~~~~----------~~~k~YAEKim~~~-----------~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~ 125 (225)
T PF07385_consen 67 GLTLFTLRNGNLNDL----------KYPKPYAEKIMIVR-----------EGQVTPMHFHWKKMEDIINRGGGNLVIELY 125 (225)
T ss_dssp -EEEEEEE---TTS-----------S----EEEEEEEE------------BT-EEEEEEESS--EEEEEEEES-EEEEEE
T ss_pred CCEEEEEeCCCcccC----------CCCCcchhhheecc-----------CCCcCCcccCcchhhheeecCCceEEEEEE
Confidence 466788888875543 11223333333322 36899999999 4689999999
Q ss_pred ccc--cCCCCCCCeeEee
Q 029749 165 SEQ--RPVSKQSPLAISH 180 (188)
Q Consensus 165 See--RpVSk~tPl~IsH 180 (188)
... .-..+++|+.++=
T Consensus 126 ~s~~~~~~~~~~~v~V~~ 143 (225)
T PF07385_consen 126 NSDPDGELDADTDVTVPV 143 (225)
T ss_dssp EB--TTSSB-SS-EEEEE
T ss_pred eccCCCccccCCCeEEec
Confidence 865 4567788988763
No 21
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=26.36 E-value=60 Score=24.16 Aligned_cols=25 Identities=44% Similarity=0.805 Sum_probs=18.3
Q ss_pred eecCCCCCceEEEEecccceeEEeeeccc
Q 029749 117 YGGNLLPNGEWMLVDKCQGLALVNRFNVE 145 (188)
Q Consensus 117 ~eG~~rPNGEWmLvDk~~glalVNrFdv~ 145 (188)
.|| ..+++|+|+|- |=-+||=|..+
T Consensus 64 ~EG--~~~~~WillD~--g~ivVHif~~e 88 (99)
T TIGR00090 64 VEG--LEEGDWVLVDL--GDVVVHIFQPE 88 (99)
T ss_pred ccC--CCCCCEEEEEC--CCEEEEeCChH
Confidence 455 46899999996 56778877543
No 22
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=25.44 E-value=2e+02 Score=23.36 Aligned_cols=50 Identities=24% Similarity=0.566 Sum_probs=30.7
Q ss_pred eeeeee--hhhcCCCeeeEEEeeeccccEEEEEEeeccCCCCceEEEeceeEeee
Q 029749 14 FFCCRR--SLQHGGEEESLMLEGDIGGGLILQRKLTIPKDNPKIFKIDSKILAGR 66 (188)
Q Consensus 14 Y~Vi~R--~l~~~~~eE~l~LEGDIGGGLVL~R~Isi~kd~p~i~~I~SsI~ARs 66 (188)
|++... .|...+.+.++.+..+.|.|+.+.|...+.+++ ..||=+|...+
T Consensus 72 f~~~~~~~~l~~~~~~~~vtf~~~~~~g~~i~k~ytf~~~~---Y~~~~~i~~~n 123 (270)
T PF14849_consen 72 FSVSQKSYTLKEGGDSQSVTFTAQLGNGLTITKTYTFKPDS---YLVDLEISVTN 123 (270)
T ss_dssp -B-S-SEEE--TT-SEEEEEEEEE-TTS-EEEEEEEEETT-----EEEEEEEEE-
T ss_pred EEEcCCceeeccCCCceEEEEEEECCCCEEEEEEEEEcCCc---EEEEEEEEEEC
Confidence 555543 344456889999999999999999999999885 45555555554
No 23
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=23.80 E-value=1.7e+02 Score=23.09 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=31.7
Q ss_pred cccEEEEEEeeccCCCCceEEEeceeEeeeeccCCCCcce
Q 029749 37 GGGLILQRKLTIPKDNPKIFKIDSKILAGRVGAGSGGFSR 76 (188)
Q Consensus 37 GGGLVL~R~Isi~kd~p~i~~I~SsI~ARsVGAGSGGFSR 76 (188)
+.|+|--|-....++.-.+++-.+.+++|+.-+|.-|||-
T Consensus 117 ~~giv~~~~~v~Nq~Ge~V~~~~~~~~~r~~~~~~~~~~~ 156 (159)
T PRK13692 117 GTQIIVTKNIVTNEEGDVVQETYTTLAGRAGEDGEEGFSD 156 (159)
T ss_pred CceEEEEEEEEEcCCCCEEEEEEEEEEEecCCcCCccccc
Confidence 4477666666666666778889999999999999999984
No 24
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=23.45 E-value=30 Score=28.09 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=12.2
Q ss_pred eeccCCCCcceeEEEEe
Q 029749 66 RVGAGSGGFSRLVCLRV 82 (188)
Q Consensus 66 sVGAGSGGFSRLvcLRV 82 (188)
-+|||+|++++...-|+
T Consensus 57 DlG~GtG~~t~~l~~~~ 73 (209)
T PRK11188 57 DLGAAPGGWSQYAVTQI 73 (209)
T ss_pred EEcccCCHHHHHHHHHc
Confidence 47999999987544343
No 25
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.23 E-value=40 Score=32.82 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=14.9
Q ss_pred CCCCCceEEEEecccceeEEeeec
Q 029749 120 NLLPNGEWMLVDKCQGLALVNRFN 143 (188)
Q Consensus 120 ~~rPNGEWmLvDk~~glalVNrFd 143 (188)
..+|||||-|++-.+. .-+.-|+
T Consensus 194 ~yi~NGEW~Ll~~pak-r~~~~y~ 216 (486)
T KOG3646|consen 194 TYIPNGEWDLLGTPAK-REEKTYD 216 (486)
T ss_pred hcccCCceeecccccc-ceeeecc
Confidence 3579999999976543 2334444
No 26
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=23.22 E-value=27 Score=28.62 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=10.0
Q ss_pred eEeeeeccCCCCc
Q 029749 62 ILAGRVGAGSGGF 74 (188)
Q Consensus 62 I~ARsVGAGSGGF 74 (188)
+..-|-|||||=|
T Consensus 26 V~GSSAGAGSGeF 38 (142)
T PF06658_consen 26 VQGSSAGAGSGEF 38 (142)
T ss_pred ccccccccCccHH
Confidence 4455789999987
No 27
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=23.16 E-value=30 Score=22.63 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=29.9
Q ss_pred ccEEEEEEeeccCCCCceEEEeceeEeeeeccCC
Q 029749 38 GGLILQRKLTIPKDNPKIFKIDSKILAGRVGAGS 71 (188)
Q Consensus 38 GGLVL~R~Isi~kd~p~i~~I~SsI~ARsVGAGS 71 (188)
.|+.-.+...+|.+.-.-+++.+++..|-.|.|+
T Consensus 17 ~G~~~~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~ 50 (80)
T PF03703_consen 17 SGLFSKRTTIIPLDRIQSVSIKQNPLQRLFGLGT 50 (80)
T ss_pred ECeEEEEEEEEEhhHeEEEEEEcCHHHHhCccEE
Confidence 3889999999999999999999999999888653
No 28
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=23.01 E-value=85 Score=26.09 Aligned_cols=25 Identities=32% Similarity=0.625 Sum_probs=22.4
Q ss_pred ccceeeEEEEEcCCeeeeeeccccc
Q 029749 144 VEEVFKCFIHWGTGTVNLELWSEQR 168 (188)
Q Consensus 144 v~eV~kC~vhWg~g~vnlELWSeeR 168 (188)
=.+|..|+|-=.||++|..+|.|+-
T Consensus 35 g~~v~~~kVaD~TgsI~isvW~e~~ 59 (134)
T KOG3416|consen 35 GHEVRSCKVADETGSINISVWDEEG 59 (134)
T ss_pred CCEEEEEEEecccceEEEEEecCcC
Confidence 3589999999999999999999764
No 29
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=22.58 E-value=32 Score=26.95 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=7.8
Q ss_pred eccccEEEE
Q 029749 35 DIGGGLILQ 43 (188)
Q Consensus 35 DIGGGLVL~ 43 (188)
||||||.|.
T Consensus 62 ~lGGGl~m~ 70 (126)
T PF12757_consen 62 NLGGGLFMD 70 (126)
T ss_pred eCCCCcccC
Confidence 899999874
No 30
>PRK11538 ribosome-associated protein; Provisional
Probab=22.50 E-value=74 Score=24.28 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=15.7
Q ss_pred CCceEEEEecccceeEEeeeccc
Q 029749 123 PNGEWMLVDKCQGLALVNRFNVE 145 (188)
Q Consensus 123 PNGEWmLvDk~~glalVNrFdv~ 145 (188)
.+++|+|+| .|=-+|+=|..+
T Consensus 73 ~~~~WillD--~g~ivVHif~~e 93 (105)
T PRK11538 73 NAADWIVVD--LGDVIVHVMQEE 93 (105)
T ss_pred CCCCEEEEe--CCCEEEEcCCHH
Confidence 578999999 455677777654
No 31
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=22.30 E-value=81 Score=21.89 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=18.7
Q ss_pred eEeeeeccC-CCCcceeEEEEeecc
Q 029749 62 ILAGRVGAG-SGGFSRLVCLRVHPM 85 (188)
Q Consensus 62 I~ARsVGAG-SGGFSRLvcLRVhPt 85 (188)
|.++..|.| .+|-.+.+.|.+.|.
T Consensus 55 i~~~~~~~G~~~G~~~~~~l~~d~~ 79 (85)
T PF09079_consen 55 IESERKGRGRGRGRTREISLNVDPE 79 (85)
T ss_dssp EEEEEEE-TT-CTEEEEEEECSSSH
T ss_pred eEEEeecCCCCCCeEEEEEecCCHH
Confidence 567888999 599999999998874
No 32
>KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=21.93 E-value=29 Score=30.76 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=22.7
Q ss_pred EEEEEeeeCCceeecCCCcceeeecCCCCCceEEEEecccceeEEeeeccccee
Q 029749 95 FISFTSIDGSKQEIWPESGEQFYGGNLLPNGEWMLVDKCQGLALVNRFNVEEVF 148 (188)
Q Consensus 95 ~V~FTaidGsk~El~p~~gE~~~eG~~rPNGEWmLvDk~~glalVNrFdv~eV~ 148 (188)
|..=..++|+.--..|+ -.|.|||.++|= .=--||-++.+
T Consensus 141 fpln~n~~~~~~~~vP~-------------~d~~lvdsetGG-~G~~~dW~~~s 180 (227)
T KOG4202|consen 141 FPLNANEDGKLLNEVPE-------------EDWILVDSETGG-SGKGFDWAQFS 180 (227)
T ss_pred EecCchhhhHhhccCCc-------------hhheeeccccCc-CcCccCHHHhc
Confidence 33444556654444444 349999999983 23445544443
No 33
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=21.73 E-value=84 Score=23.09 Aligned_cols=61 Identities=28% Similarity=0.353 Sum_probs=31.9
Q ss_pred eEEEEeecceEeecCcceEEEEEeeeCC---------ceeecCCCcce--eeecCCCCCceEEEEecccceeEEeeecc
Q 029749 77 LVCLRVHPMFTLLHPTKSFISFTSIDGS---------KQEIWPESGEQ--FYGGNLLPNGEWMLVDKCQGLALVNRFNV 144 (188)
Q Consensus 77 LvcLRVhPtF~l~HPtes~V~FTaidGs---------k~El~p~~gE~--~~eG~~rPNGEWmLvDk~~glalVNrFdv 144 (188)
++++.+++ ..-+++-||.-|+-+.. ...+.-+.|.. ..||. .+++|+++|- |=-+||=|..
T Consensus 17 I~v~dv~~---~~~~~dy~II~T~~S~rh~~aia~~v~~~~~k~~~~~~~~~eG~--~~~~W~lvD~--g~ivVHif~~ 88 (100)
T PF02410_consen 17 IVVLDVRE---KSSWADYFIIATGRSERHVRAIADEVEKALKKEYGERPLRIEGL--DESDWVLVDY--GDIVVHIFTP 88 (100)
T ss_dssp EEEEEGCT---TBSS-SEEEEEEESSHHHHHHHHHHHHHHH-HHTT----EEEST--TTTSEEEEEE--SSEEEEEEEH
T ss_pred eEEEECCC---CCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHHcCCcccccCCC--CCCCEEEEcc--cEEEEEcCCH
Confidence 44555555 23456666766664322 11221112322 34443 7889999997 5567776654
No 34
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=21.22 E-value=69 Score=24.95 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.0
Q ss_pred eeccCCCCceEEEeceeEeeee
Q 029749 46 LTIPKDNPKIFKIDSKILAGRV 67 (188)
Q Consensus 46 Isi~kd~p~i~~I~SsI~ARsV 67 (188)
..+||++.|.++|+|+--++.|
T Consensus 11 f~lp~~s~k~v~IsS~tTt~eV 32 (96)
T cd01778 11 LPLPKDTAKHLHISSKTTVREV 32 (96)
T ss_pred EeccCCceeEEEEecCCcHHHH
Confidence 3467999999999999988876
Done!