Query 029749
Match_columns 188
No_of_seqs 22 out of 24
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 04:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o5a_A BH1328 protein; BHR21, 79.7 1.1 3.9E-05 34.1 2.8 52 117-181 69-121 (125)
2 3dm3_A Replication factor A; p 62.7 39 0.0013 24.1 7.6 68 114-182 4-78 (105)
3 3e0e_A Replication protein A; 62.3 30 0.001 24.1 6.7 63 119-182 6-75 (97)
4 2k75_A Uncharacterized protein 39.0 1E+02 0.0034 21.8 7.6 63 118-182 6-72 (106)
5 3od9_A Putative exported prote 35.4 38 0.0013 27.0 3.9 61 35-104 48-112 (135)
6 1wjj_A Hypothetical protein F2 30.3 1.1E+02 0.0038 23.5 5.8 39 144-182 60-99 (145)
7 3ups_A Iojap-like protein; PSI 24.6 30 0.001 26.7 1.6 26 116-145 84-109 (136)
8 3gon_A Phosphomevalonate kinas 24.4 25 0.00084 27.3 1.1 13 62-74 286-298 (335)
9 2id1_A Hypothetical protein; a 21.9 36 0.0012 26.0 1.6 23 122-146 72-94 (130)
10 2plw_A Ribosomal RNA methyltra 21.8 17 0.00057 25.9 -0.3 17 66-82 28-44 (201)
11 3q87_B N6 adenine specific DNA 21.3 8.7 0.0003 27.7 -1.9 30 66-109 29-58 (170)
12 1rk8_C PYM protein, within the 20.6 30 0.001 24.1 0.8 19 110-128 6-24 (58)
13 3kl4_B DPAP B, YSCV, signal pe 20.5 45 0.0015 21.8 1.6 14 68-81 4-17 (42)
No 1
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=79.72 E-value=1.1 Score=34.15 Aligned_cols=52 Identities=29% Similarity=0.607 Sum_probs=28.3
Q ss_pred eecCCCCCceEEEEecccceeEEeeecccceeeEEEEEcCCeeeee-ecccccCCCCCCCeeEeee
Q 029749 117 YGGNLLPNGEWMLVDKCQGLALVNRFNVEEVFKCFIHWGTGTVNLE-LWSEQRPVSKQSPLAISHE 181 (188)
Q Consensus 117 ~eG~~rPNGEWmLvDk~~glalVNrFdv~eV~kC~vhWg~g~vnlE-LWSeeRpVSk~tPl~IsH~ 181 (188)
.|| .++|+|+|+|- |=-+|+=|...+= .--||| ||+....+.-+.+.++.|+
T Consensus 69 ~EG--~~~~~WvLlD~--GdVvVHif~~e~R---------efY~LE~LW~da~~~~~~~~~~~~~~ 121 (125)
T 2o5a_A 69 LEG--YEQARWVLIDL--GDVVVHVFHKDER---------AYYNLEKLWGDAPTVELEGVISLEHH 121 (125)
T ss_dssp EES--TTTTSEEEEEC--SSEEEEEEETTCG---------GGTSTTTCC---CBCCSCC-------
T ss_pred ccC--CCCCCEEEEeC--CCEEEEeCCHHHH---------hHcCHHHHhCCCCccccccccchhhh
Confidence 455 46999999995 5678888876542 224565 8987665655555555554
No 2
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=62.66 E-value=39 Score=24.13 Aligned_cols=68 Identities=15% Similarity=0.302 Sum_probs=50.8
Q ss_pred ceeeecCCCCCceEEEEecccceeEEeeecc-----cceeeEEEEEcCCeeeeeeccccc--CCCCCCCeeEeeee
Q 029749 114 EQFYGGNLLPNGEWMLVDKCQGLALVNRFNV-----EEVFKCFIHWGTGTVNLELWSEQR--PVSKQSPLAISHEY 182 (188)
Q Consensus 114 E~~~eG~~rPNGEWmLvDk~~glalVNrFdv-----~eV~kC~vhWg~g~vnlELWSeeR--pVSk~tPl~IsH~Y 182 (188)
|..-=+++.|+..|-+.=......=++.|+- -+|..+.+-=+||++.+-||.++- .+....-+.| +-|
T Consensus 4 ~~~~I~dL~~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i-~g~ 78 (105)
T 3dm3_A 4 DTYNIGELSPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRV-RGY 78 (105)
T ss_dssp CEECGGGCCSSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGSCCCTTCEEEE-EEE
T ss_pred cceEHHHCCCCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccccccCCCCEEEE-EEE
Confidence 3444567888877777777776666777764 458889999999999999999854 5677777777 554
No 3
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=62.31 E-value=30 Score=24.06 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=47.0
Q ss_pred cCCCCCceEEEEecccceeEEeeecc-----cceeeEEEEEcCCeeeeeeccccc--CCCCCCCeeEeeee
Q 029749 119 GNLLPNGEWMLVDKCQGLALVNRFNV-----EEVFKCFIHWGTGTVNLELWSEQR--PVSKQSPLAISHEY 182 (188)
Q Consensus 119 G~~rPNGEWmLvDk~~glalVNrFdv-----~eV~kC~vhWg~g~vnlELWSeeR--pVSk~tPl~IsH~Y 182 (188)
.++.|+..|-++=+.....-++.|.- ..|..|.+-=+||++.+-||.++- .+....-++| .-|
T Consensus 6 ~dl~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~~i~~Gdvv~i-~g~ 75 (97)
T 3e0e_A 6 SELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEV-SGY 75 (97)
T ss_dssp GGCCTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGCCCCTTCEEEE-EEE
T ss_pred HHCCCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccccccCCCCEEEE-EEE
Confidence 46777777777666666665666654 469999999999999999999876 4667777777 555
No 4
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=38.95 E-value=1e+02 Score=21.78 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=43.6
Q ss_pred ecCCCCCceE-EEEecccceeEE-eeecccc--eeeEEEEEcCCeeeeeecccccCCCCCCCeeEeeee
Q 029749 118 GGNLLPNGEW-MLVDKCQGLALV-NRFNVEE--VFKCFIHWGTGTVNLELWSEQRPVSKQSPLAISHEY 182 (188)
Q Consensus 118 eG~~rPNGEW-mLvDk~~glalV-NrFdv~e--V~kC~vhWg~g~vnlELWSeeRpVSk~tPl~IsH~Y 182 (188)
=.|+.|+..| -++-+-.-+.-. ++=|=++ |..|.+-=.||++.+-+|.++ +....-++|..-|
T Consensus 6 I~dl~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~--l~~Gdvv~i~ng~ 72 (106)
T 2k75_A 6 IRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ--LQDSDVVRIDNAR 72 (106)
T ss_dssp STTCCTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC--CCTTEEEEEEEEE
T ss_pred HHHcCCCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc--cCCCCEEEEEeeE
Confidence 3467777765 333333333333 3334443 889999999999999999998 8888888887654
No 5
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=35.40 E-value=38 Score=26.95 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=40.4
Q ss_pred eccccEEEEEEeeccCCCCceEEEec----eeEeeeeccCCCCcceeEEEEeecceEeecCcceEEEEEeeeCC
Q 029749 35 DIGGGLILQRKLTIPKDNPKIFKIDS----KILAGRVGAGSGGFSRLVCLRVHPMFTLLHPTKSFISFTSIDGS 104 (188)
Q Consensus 35 DIGGGLVL~R~Isi~kd~p~i~~I~S----sI~ARsVGAGSGGFSRLvcLRVhPtF~l~HPtes~V~FTaidGs 104 (188)
|--.|+|..|+=+|-+ .+..-||. -++...+=||||+|-...-+++.|- +-+=.+++|+|.
T Consensus 48 dF~~G~v~~RDGtI~~--a~laDlngd~~~eLiVt~~sAGSG~Y~~~dA~~i~~~-------~~l~ll~~V~gl 112 (135)
T 3od9_A 48 QFIDGKVLPRDGSIKE--LKLLDLNGDKQPELIVVVESAGSGSYLSADAFTLNPQ-------EGLDSFNHVEGL 112 (135)
T ss_dssp SEEEEEEEEESSEEEE--EEEECSSSSSSCEEEEEEECSSTTCCEEEEEEEEETT-------TEEEEEEEEEEE
T ss_pred HhhhcceeccCCeEEE--EEEEecCCCCCeeEEEEEEeecCCcceeEEEEEECCC-------CceEEEEEeccc
Confidence 3456889988766654 22222222 3566778899999999999998875 223456777764
No 6
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=30.32 E-value=1.1e+02 Score=23.49 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=31.9
Q ss_pred ccceeeEEEEEcCCeeeeeecccccC-CCCCCCeeEeeee
Q 029749 144 VEEVFKCFIHWGTGTVNLELWSEQRP-VSKQSPLAISHEY 182 (188)
Q Consensus 144 v~eV~kC~vhWg~g~vnlELWSeeRp-VSk~tPl~IsH~Y 182 (188)
-..|..|.|-=.||++++-||.++-+ +....-++|.+-|
T Consensus 60 ~~~V~~~lVgDeTG~I~ftlW~e~~~~l~~Gd~v~i~na~ 99 (145)
T 1wjj_A 60 PSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSR 99 (145)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTHHHHTCTTCEEEEEEEE
T ss_pred CceEEEEEEEcCCcEEEEEEecCCcCcCCCCCEEEEeccE
Confidence 45689999999999999999998644 6777777777655
No 7
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=24.56 E-value=30 Score=26.72 Aligned_cols=26 Identities=35% Similarity=0.744 Sum_probs=19.1
Q ss_pred eeecCCCCCceEEEEecccceeEEeeeccc
Q 029749 116 FYGGNLLPNGEWMLVDKCQGLALVNRFNVE 145 (188)
Q Consensus 116 ~~eG~~rPNGEWmLvDk~~glalVNrFdv~ 145 (188)
..|| ..+|+|+|+|- |=-+|+=|...
T Consensus 84 ~~EG--~~~~~WvLlD~--GdVvVHIf~~e 109 (136)
T 3ups_A 84 KIEG--LPAADWVLLDA--GDIIIHLFRPE 109 (136)
T ss_dssp EEES--CSSCSEEEEEC--SSEEEEEECHH
T ss_pred cccC--CCCCCEEEEeC--CCEEEEeCCHH
Confidence 3566 46899999996 56777777654
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=24.36 E-value=25 Score=27.34 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=11.2
Q ss_pred eEeeeeccCCCCc
Q 029749 62 ILAGRVGAGSGGF 74 (188)
Q Consensus 62 I~ARsVGAGSGGF 74 (188)
..||.-|||.||+
T Consensus 286 ~~akltGAG~Ggc 298 (335)
T 3gon_A 286 AVAKSSGAGGGDC 298 (335)
T ss_dssp EEEEECTTCSSSE
T ss_pred cEEEEccccchhe
Confidence 4689999999996
No 9
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=21.89 E-value=36 Score=26.04 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=17.3
Q ss_pred CCCceEEEEecccceeEEeeecccc
Q 029749 122 LPNGEWMLVDKCQGLALVNRFNVEE 146 (188)
Q Consensus 122 rPNGEWmLvDk~~glalVNrFdv~e 146 (188)
..+|+|+|+|- |=-+|+=|...+
T Consensus 72 ~~~~~WvLlD~--GdVvVHIf~~e~ 94 (130)
T 2id1_A 72 HESGEWVLVDA--GDVVVHVMLPAV 94 (130)
T ss_dssp TTTSSEEEEEE--TTEEEEEECHHH
T ss_pred CCCCCEEEEec--CCEEEEcCCHHH
Confidence 46899999995 567777776543
No 10
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=21.76 E-value=17 Score=25.92 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=12.7
Q ss_pred eeccCCCCcceeEEEEe
Q 029749 66 RVGAGSGGFSRLVCLRV 82 (188)
Q Consensus 66 sVGAGSGGFSRLvcLRV 82 (188)
-+|+|+|++++...-|.
T Consensus 28 DlGcG~G~~~~~l~~~~ 44 (201)
T 2plw_A 28 DIGCYPGSWCQVILERT 44 (201)
T ss_dssp EESCTTCHHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHc
Confidence 57999999987654443
No 11
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=21.35 E-value=8.7 Score=27.67 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=19.5
Q ss_pred eeccCCCCcceeEEEEeecceEeecCcceEEEEEeeeCCceeec
Q 029749 66 RVGAGSGGFSRLVCLRVHPMFTLLHPTKSFISFTSIDGSKQEIW 109 (188)
Q Consensus 66 sVGAGSGGFSRLvcLRVhPtF~l~HPtes~V~FTaidGsk~El~ 109 (188)
-+|+|+|.++....-+. ..+++|-++.-+.
T Consensus 29 D~GcG~G~~~~~l~~~~--------------~v~gvD~s~~~~~ 58 (170)
T 3q87_B 29 DLGTSTGVITEQLRKRN--------------TVVSTDLNIRALE 58 (170)
T ss_dssp EETCTTCHHHHHHTTTS--------------EEEEEESCHHHHH
T ss_pred EeccCccHHHHHHHhcC--------------cEEEEECCHHHHh
Confidence 58999999987543221 5677776655443
No 12
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=20.59 E-value=30 Score=24.09 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=16.9
Q ss_pred CCCcceeeecCCCCCceEE
Q 029749 110 PESGEQFYGGNLLPNGEWM 128 (188)
Q Consensus 110 p~~gE~~~eG~~rPNGEWm 128 (188)
.+.||.++-++-||+|.|.
T Consensus 6 ~~~g~~~I~~s~RpDGT~R 24 (58)
T 1rk8_C 6 QSSEGKFIPATKRPDGTWR 24 (58)
T ss_dssp EETTEEEECCEECTTSCEE
T ss_pred ccCCCEEcccccCCCCccc
Confidence 4578999999999999996
No 13
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=20.49 E-value=45 Score=21.84 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=10.1
Q ss_pred ccCCCCcceeEEEE
Q 029749 68 GAGSGGFSRLVCLR 81 (188)
Q Consensus 68 GAGSGGFSRLvcLR 81 (188)
|.|||.=|.|.+.-
T Consensus 4 gsgsgsgsklirvg 17 (42)
T 3kl4_B 4 GSGSGSGSKLIRVG 17 (42)
T ss_pred CCCCCCccceEEee
Confidence 77888778886543
Done!