BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029750
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis
Thaliana
Length = 150
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Query: 2 SRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKV 61
SR PEV WAQR DKV++TV LPDAK+ V EP+G+FSFSA GA+ +E LEL+ K+
Sbjct: 2 SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSA-LGAQGERFEFSLELYGKI 60
Query: 62 NVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 100
E K NVG+R+I ++K E+ WW +LL+ + K Y
Sbjct: 61 MTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 98
>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23
pdb|1EJF|B Chain B, Crystal Structure Of The Human Co-Chaperone P23
Length = 125
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 7 VKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEES 66
KW R+D VFI + D+K+ VN E + +FS G++N + +++LF ++ +S
Sbjct: 6 AKWYDRRDYVFIEFCVEDSKDVNVNFEKSKL-TFSCLGGSDNFKHLNEIDLFHCIDPNDS 64
Query: 67 KINVGVRSIFCIVEKAEKG 85
K RSI C + K E G
Sbjct: 65 KHKRTDRSILCCLRKGESG 83
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 9 WAQRQDKVFITVQLPDAKNAKVNLE--PEGVFSFSASAGAENHLYELKLELFDKVNVEES 66
W Q + +V IT+ + + + VN+E + + + E+ Y LKLEL + E+S
Sbjct: 14 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGED--YNLKLELLHPIIPEQS 71
Query: 67 KINVGVRSIFCIVEKAEKGWWKKLL-RGDGKTP 98
V I ++K E W+KL +GD TP
Sbjct: 72 TFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTP 104
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 45 GAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRG 93
G+EN L + L+D + +I+ I +E + GWW+ + +G
Sbjct: 4 GSENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG 52
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 50 LYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 100
LY + D++N+E+ I + I EK E+GWW L +GK H+
Sbjct: 13 LYSFQARQDDELNLEKGDIVI-------IHEKKEEGWWFGSL--NGKKGHF 54
>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
Length = 448
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 4 VPE-VKWAQRQDKVFITVQLPDAKNAKVNLE 33
+PE VKW + + +FI V LPD ++K LE
Sbjct: 364 MPEGVKWTKPEGGMFIWVTLPDGIDSKKMLE 394
>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
Pyrococcus Horikoshii Ot3
Length = 403
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 4 VPE-VKWAQRQDKVFITVQLPDAKNAKVNLE 33
+PE VKW + + +FI V LPD ++K LE
Sbjct: 319 MPEGVKWTKPEGGMFIWVTLPDGIDSKKMLE 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,484,172
Number of Sequences: 62578
Number of extensions: 143732
Number of successful extensions: 288
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 17
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)