Query 029750
Match_columns 188
No_of_seqs 198 out of 807
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3158 HSP90 co-chaperone p23 100.0 3.3E-43 7.1E-48 282.5 11.2 151 2-154 5-164 (180)
2 cd00237 p23 p23 binds heat sho 100.0 1.9E-35 4.1E-40 223.0 12.9 105 4-111 1-106 (106)
3 cd06465 p23_hB-ind1_like p23_l 100.0 3E-30 6.6E-35 193.7 13.1 107 5-113 1-108 (108)
4 cd06489 p23_CS_hSgt1_like p23_ 99.9 1.4E-21 3.1E-26 140.2 9.3 82 8-91 1-84 (84)
5 PLN03088 SGT1, suppressor of 99.9 7.8E-22 1.7E-26 175.3 8.2 123 5-130 157-305 (356)
6 cd06488 p23_melusin_like p23_l 99.8 7.9E-21 1.7E-25 137.9 10.7 85 5-91 1-87 (87)
7 cd06468 p23_CacyBP p23_like do 99.8 8E-20 1.7E-24 132.7 10.8 84 6-91 3-92 (92)
8 cd06466 p23_CS_SGT1_like p23_l 99.8 3.5E-19 7.5E-24 126.6 8.8 82 8-91 1-84 (84)
9 KOG1309 Suppressor of G2 allel 99.7 6.7E-19 1.5E-23 143.0 3.1 125 3-130 2-147 (196)
10 PF04969 CS: CS domain; Inter 99.7 5.5E-17 1.2E-21 112.7 11.7 75 5-81 1-79 (79)
11 cd06469 p23_DYX1C1_like p23_li 99.7 2.8E-17 6E-22 115.5 9.0 76 9-91 1-78 (78)
12 cd06467 p23_NUDC_like p23_like 99.7 4.7E-17 1E-21 116.1 9.7 80 7-91 1-85 (85)
13 cd06463 p23_like Proteins cont 99.7 6.4E-17 1.4E-21 113.0 9.9 81 9-91 1-84 (84)
14 cd06493 p23_NUDCD1_like p23_NU 99.7 2E-16 4.3E-21 114.1 9.9 80 7-91 1-85 (85)
15 cd06490 p23_NCB5OR p23_like do 99.6 8.6E-15 1.9E-19 106.4 9.6 80 7-90 1-86 (87)
16 cd06492 p23_mNUDC_like p23-lik 99.6 9.6E-15 2.1E-19 106.4 9.3 80 7-91 1-87 (87)
17 cd06495 p23_NUDCD3_like p23-li 99.6 2.1E-14 4.6E-19 107.7 11.3 91 3-95 3-98 (102)
18 cd06494 p23_NUDCD2_like p23-li 99.6 1.8E-14 3.8E-19 106.4 9.9 83 3-91 4-93 (93)
19 KOG1667 Zn2+-binding protein M 99.4 1.5E-12 3.3E-17 111.1 7.8 90 3-93 213-304 (320)
20 KOG2265 Nuclear distribution p 99.3 2E-12 4.3E-17 104.8 6.2 120 3-130 17-143 (179)
21 cd00298 ACD_sHsps_p23-like Thi 99.1 4.2E-10 9.1E-15 76.3 8.8 72 9-81 1-80 (80)
22 KOG3260 Calcyclin-binding prot 98.9 2E-09 4.2E-14 88.2 5.3 84 6-91 76-162 (224)
23 COG5091 SGT1 Suppressor of G2 98.7 2.2E-09 4.8E-14 93.1 0.2 123 6-130 178-319 (368)
24 KOG4379 Uncharacterized conser 98.1 7.5E-06 1.6E-10 75.3 6.9 88 1-94 286-378 (596)
25 COG0071 IbpA Molecular chapero 97.8 0.00041 9E-09 54.5 11.0 81 3-84 39-135 (146)
26 cd06472 ACD_ScHsp26_like Alpha 97.7 0.00063 1.4E-08 49.2 9.6 76 6-81 1-92 (92)
27 cd06471 ACD_LpsHSP_like Group 97.4 0.0033 7.2E-08 45.3 10.1 75 5-81 1-93 (93)
28 cd06464 ACD_sHsps-like Alpha-c 97.4 0.0022 4.7E-08 44.7 8.8 72 9-81 2-88 (88)
29 PF00011 HSP20: Hsp20/alpha cr 97.2 0.011 2.3E-07 43.0 11.3 76 8-84 1-90 (102)
30 cd06526 metazoan_ACD Alpha-cry 96.4 0.034 7.3E-07 39.4 8.6 67 14-81 7-83 (83)
31 cd06497 ACD_alphaA-crystallin_ 96.2 0.072 1.6E-06 38.4 9.3 71 10-81 6-86 (86)
32 cd06475 ACD_HspB1_like Alpha c 96.2 0.1 2.2E-06 37.6 9.9 71 8-79 4-84 (86)
33 cd06470 ACD_IbpA-B_like Alpha- 96.1 0.16 3.4E-06 36.6 10.9 74 5-81 1-90 (90)
34 cd06479 ACD_HspB7_like Alpha c 95.8 0.13 2.8E-06 36.9 9.0 70 11-81 5-81 (81)
35 PRK10743 heat shock protein Ib 95.7 0.26 5.6E-06 38.7 11.2 75 5-82 35-124 (137)
36 PF08190 PIH1: pre-RNA process 95.7 0.077 1.7E-06 46.2 8.9 64 12-80 259-327 (328)
37 cd06498 ACD_alphaB-crystallin_ 95.7 0.16 3.6E-06 36.4 9.2 70 12-82 5-84 (84)
38 cd06478 ACD_HspB4-5-6 Alpha-cr 95.5 0.15 3.4E-06 36.3 8.4 70 11-81 4-83 (83)
39 PRK11597 heat shock chaperone 94.8 0.71 1.5E-05 36.5 11.2 76 4-82 32-122 (142)
40 cd06476 ACD_HspB2_like Alpha c 94.5 0.39 8.5E-06 34.4 8.2 68 13-81 6-83 (83)
41 cd06481 ACD_HspB9_like Alpha c 94.3 0.41 8.9E-06 34.5 8.0 66 13-79 6-85 (87)
42 cd06477 ACD_HspB3_Like Alpha c 90.4 5 0.00011 28.7 9.5 66 12-78 5-80 (83)
43 KOG3158 HSP90 co-chaperone p23 90.3 0.28 6.1E-06 40.3 3.0 20 127-146 148-167 (180)
44 cd06482 ACD_HspB10 Alpha cryst 88.7 5.8 0.00013 28.7 8.7 64 13-77 7-83 (87)
45 cd06480 ACD_HspB8_like Alpha-c 83.3 15 0.00033 26.8 8.8 67 12-79 13-89 (91)
46 PF05455 GvpH: GvpH; InterPro 77.4 30 0.00064 28.6 9.3 70 9-83 96-169 (177)
47 TIGR03066 Gem_osc_para_1 Gemma 50.7 35 0.00075 26.1 4.5 44 26-82 34-77 (111)
48 PF09087 Cyc-maltodext_N: Cycl 43.1 1.3E+02 0.0028 21.9 7.4 64 5-70 4-69 (88)
49 cd05734 Ig7_DSCAM Seventh immu 43.0 73 0.0016 21.2 4.9 53 4-56 12-64 (79)
50 PF06543 Lac_bphage_repr: Lact 38.4 8.8 0.00019 25.1 -0.3 10 102-111 17-26 (49)
51 cd06526 metazoan_ACD Alpha-cry 38.4 71 0.0015 22.1 4.3 34 49-83 7-40 (83)
52 KOG0710 Molecular chaperone (s 35.7 1.2E+02 0.0025 25.0 5.8 79 6-84 84-182 (196)
53 cd05726 Ig4_Robo Fhird immunog 35.1 1.5E+02 0.0032 20.3 5.8 58 4-61 15-73 (90)
54 cd05845 Ig2_L1-CAM_like Second 34.8 1.2E+02 0.0025 22.2 5.1 46 4-56 33-79 (95)
55 cd06464 ACD_sHsps-like Alpha-c 33.9 87 0.0019 20.9 4.2 35 48-83 6-40 (88)
56 cd05885 Ig2_Necl-4 Second immu 32.5 1.8E+02 0.0039 20.5 5.8 50 4-56 14-63 (80)
57 PF01079 Hint: Hint module; I 31.2 3E+02 0.0065 23.1 7.7 61 5-69 51-114 (217)
58 cd05724 Ig2_Robo Second immuno 30.2 1.6E+02 0.0036 19.4 5.1 20 37-56 52-71 (86)
59 cd05765 Ig_3 Subgroup of the i 29.5 1.7E+02 0.0036 19.1 5.5 57 4-60 15-72 (81)
60 KOG3591 Alpha crystallins [Pos 27.0 3.4E+02 0.0074 22.0 8.6 68 15-83 73-150 (173)
61 cd05738 Ig2_RPTP_IIa_LAR_like 24.0 2.2E+02 0.0047 18.7 5.8 47 4-56 12-58 (74)
62 KOG3247 Uncharacterized conser 21.6 66 0.0014 30.2 2.1 81 3-90 2-88 (466)
63 cd04969 Ig5_Contactin_like Fif 21.0 1.9E+02 0.0042 18.7 3.9 45 4-56 15-59 (73)
No 1
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-43 Score=282.46 Aligned_cols=151 Identities=49% Similarity=0.879 Sum_probs=130.3
Q ss_pred CCCCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEe
Q 029750 2 SRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEK 81 (188)
Q Consensus 2 s~~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK 81 (188)
.++|.|.||||.+.|||||+|.++++++|+|++. .|+|+|+++++++.|+++|+||++|+|++|++++.+|.|+++|+|
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~-~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPS-KLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCccceeecccc-EEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence 4789999999999999999999999999999998 999999988888999999999999999999999999999999999
Q ss_pred CCC-CcccceecCCCCCCCceeecCCCCccccccCCCCCCC----CCCCccccC-CCCCCCCCCCC---CCCCCCCCCCC
Q 029750 82 AEK-GWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLD----LGGMDFSNF-GGMGGDDGMGG---FEDSDDEEVSK 152 (188)
Q Consensus 82 ~~~-~~WprL~k~~~kk~~~lkvDwdkw~DEddee~~~~~~----~~~~df~~~-~g~gg~~~~~~---~dd~dd~~~~~ 152 (188)
++. .+|||||+++. |+||||+||+||+||||++++++.+ .++|+|.++ |||||+++++- ..+..+++||+
T Consensus 84 ~e~~~~WprLtkeK~-K~hwLkvDFdkW~Dededde~~~~~~~g~a~g~~~~~~mggmgg~~~~Df~~~~~~~~~~d~~d 162 (180)
T KOG3158|consen 84 KELGEYWPRLTKEKA-KLHWLKVDFDKWVDEDEDDEAEDADGMGGAGGMDFSQMMGGMGGAEGVDFGVLEGDGADDDMPD 162 (180)
T ss_pred cccccccchhhhccc-ccceEEcchhhccccccccchhhccccccccccchhhccccCCcccccccccccccccCCCCCC
Confidence 876 79999999999 8999999999999999887654443 566777774 66777543222 23556677888
Q ss_pred ch
Q 029750 153 PQ 154 (188)
Q Consensus 153 ~~ 154 (188)
++
T Consensus 163 ~e 164 (180)
T KOG3158|consen 163 SE 164 (180)
T ss_pred CC
Confidence 88
No 2
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=100.00 E-value=1.9e-35 Score=222.96 Aligned_cols=105 Identities=32% Similarity=0.605 Sum_probs=98.8
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~ 83 (188)
+|.+.||||++.|||||+++++++++|+|+++ +|+|++.++ +|..|+|+|+||++|+|++|++++++|+|+|+|+|++
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~~-~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEKS-KLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CCcceeeECCCEEEEEEEeCCCCCcEEEEecC-EEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC
Confidence 69999999999999999999999999999998 999999754 6778999999999999999999999999999999987
Q ss_pred C-CcccceecCCCCCCCceeecCCCCccc
Q 029750 84 K-GWWKKLLRGDGKTPHYVKVDWDKWVDE 111 (188)
Q Consensus 84 ~-~~WprL~k~~~kk~~~lkvDwdkw~DE 111 (188)
. .+||||++++. |+|||++|||||+||
T Consensus 79 ~~~~WprL~k~~~-k~~~lk~DfdkW~D~ 106 (106)
T cd00237 79 EGVAWPRLTKEKA-KPNWLSVDFDNWRDW 106 (106)
T ss_pred CCCCCchhhcCCC-CCCcEECcchhccCC
Confidence 4 48999999988 799999999999986
No 3
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.97 E-value=3e-30 Score=193.68 Aligned_cols=107 Identities=46% Similarity=0.842 Sum_probs=100.3
Q ss_pred CCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCC-
Q 029750 5 PEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE- 83 (188)
Q Consensus 5 P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~- 83 (188)
|.|.||||.+.|+|+|++++++++.|.|+++ +|+|++.++.+++.|.+.++||++|+|++|+|++.+++|+|+|+|+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~~-~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEPT-SLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred CceeeeECCCEEEEEEEeCCCCCcEEEEECC-EEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 7899999999999999999999999999999 99999975445678999999999999999999999999999999998
Q ss_pred CCcccceecCCCCCCCceeecCCCCccccc
Q 029750 84 KGWWKKLLRGDGKTPHYVKVDWDKWVDEDE 113 (188)
Q Consensus 84 ~~~WprL~k~~~kk~~~lkvDwdkw~DEdd 113 (188)
+.+|+||++++. |++|+++||+||+||||
T Consensus 80 ~~~W~~L~~~~~-k~~~~~~d~~~w~d~~~ 108 (108)
T cd06465 80 GEYWPRLTKEKG-KLPWLKVDFDKWVDEDE 108 (108)
T ss_pred CCCCcccccCCC-CCCceECCchhcccCCC
Confidence 789999999988 78999999999999986
No 4
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.86 E-value=1.4e-21 Score=140.20 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=76.1
Q ss_pred EEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCCC
Q 029750 8 KWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKG 85 (188)
Q Consensus 8 ~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~~~ 85 (188)
+||||.+.|+|+|+++++ ++++|+|+++ +|+|++.+ .+++.|.|+++||++|+|++|+|++.+++|+|+|+|+++.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 78 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKL-PSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAI 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEEC-CCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCC
Confidence 599999999999999999 7999999998 99999874 3556799999999999999999999999999999999888
Q ss_pred ccccee
Q 029750 86 WWKKLL 91 (188)
Q Consensus 86 ~WprL~ 91 (188)
+||||+
T Consensus 79 ~W~~Le 84 (84)
T cd06489 79 RWSKLE 84 (84)
T ss_pred CCccCC
Confidence 999995
No 5
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.86 E-value=7.8e-22 Score=175.31 Aligned_cols=123 Identities=27% Similarity=0.361 Sum_probs=100.9
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeC
Q 029750 5 PEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKA 82 (188)
Q Consensus 5 P~v~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~ 82 (188)
+++.|||+.+.|+|+|+++++ .++.|+|+++ +|+|++.. .++..|.|.+.||++|+|+.|+|+|.+++|+|+|+|+
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEV-PGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEec-CCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence 689999999999999999987 5899999988 99998864 3567899999999999999999999999999999999
Q ss_pred CCCcccceecCCCC-CCCc------------------eeecCCCCcccc---ccC--CCCCCCCCCCccccC
Q 029750 83 EKGWWKKLLRGDGK-TPHY------------------VKVDWDKWVDED---EDN--GAGDLDLGGMDFSNF 130 (188)
Q Consensus 83 ~~~~WprL~k~~~k-k~~~------------------lkvDwdkw~DEd---dee--~~~~~~~~~~df~~~ 130 (188)
++.+|++|+..... .++. .++|||+|..+. +++ .+|++++++| |++|
T Consensus 235 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~-f~~i 305 (356)
T PLN03088 235 EPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKF-FREI 305 (356)
T ss_pred CCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHH-HHHH
Confidence 88899999865421 0111 257999997543 222 2456778899 9998
No 6
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.85 E-value=7.9e-21 Score=137.87 Aligned_cols=85 Identities=25% Similarity=0.388 Sum_probs=76.8
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeC
Q 029750 5 PEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKA 82 (188)
Q Consensus 5 P~v~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~ 82 (188)
++|.||||++.|+|+|+++++ +++.|.|+++ +|+|++..+ +++.|.+.++||++|+|+.|++++.+++|+|+|+|+
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~-~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFE-GNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKA 78 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECC-CCceEEEEeeccceEChhHcEEEecCcEEEEEEEeC
Confidence 489999999999999999876 5789999988 998887644 467899999999999999999999999999999999
Q ss_pred CCCccccee
Q 029750 83 EKGWWKKLL 91 (188)
Q Consensus 83 ~~~~WprL~ 91 (188)
++++||+|+
T Consensus 79 ~~~~W~~Le 87 (87)
T cd06488 79 EPGSWAKLE 87 (87)
T ss_pred CCCcCccCC
Confidence 988999994
No 7
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.82 E-value=8e-20 Score=132.74 Aligned_cols=84 Identities=21% Similarity=0.405 Sum_probs=76.6
Q ss_pred CeEEEecCCeEEEEEEcCCC-----CcceEEEecCcEEEEEEEeCCCCceEEEEEe-ccccccccCceEEecCceEEEEE
Q 029750 6 EVKWAQRQDKVFITVQLPDA-----KNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDKVNVEESKINVGVRSIFCIV 79 (188)
Q Consensus 6 ~v~WaQr~~~V~LtI~l~d~-----kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le-Lf~~I~peeSk~~v~~rkIei~L 79 (188)
+|.|+||.+.|+|+|+++++ +++.|+|+++ +|.|++. +.++.+|.+.+. ||++|+|++|+|++.+++|+|+|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~-~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVH-DLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEE-CCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 68999999999999999985 6789999988 9999986 345678999997 99999999999999999999999
Q ss_pred EeCCCCccccee
Q 029750 80 EKAEKGWWKKLL 91 (188)
Q Consensus 80 kK~~~~~WprL~ 91 (188)
+|+++.+||+|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999888999995
No 8
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.79 E-value=3.5e-19 Score=126.56 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=75.2
Q ss_pred EEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCCC
Q 029750 8 KWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKG 85 (188)
Q Consensus 8 ~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~~~ 85 (188)
.|||+.+.|+|+|+++++ +++.|.|+++ +|.|++.++ +++.|.+.++||++|+|++|+|++.+++|+|+|+|+.++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPG 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCC
Confidence 599999999999999998 7999999988 999998743 356899999999999999999999999999999999888
Q ss_pred ccccee
Q 029750 86 WWKKLL 91 (188)
Q Consensus 86 ~WprL~ 91 (188)
+||||.
T Consensus 79 ~W~~L~ 84 (84)
T cd06466 79 SWPSLE 84 (84)
T ss_pred CCccCC
Confidence 999984
No 9
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.74 E-value=6.7e-19 Score=142.96 Aligned_cols=125 Identities=24% Similarity=0.408 Sum_probs=101.7
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029750 3 RVPEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (188)
Q Consensus 3 ~~P~v~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~Lk 80 (188)
..++|.|||+...|+|||+.+++ .++.|.|..+ .|++.++. +.|..|.+.+.||++|+|+.|+|++...+|+|+|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~-~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~ 79 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQL-PSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLA 79 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEec-CCchhhhhhHHhcccccccceeeEeeeeeEEEEec
Confidence 35799999999999999999998 4888999877 78888774 36788999999999999999999999999999999
Q ss_pred eCCCCcccceecCCCC----CC-----------CceeecCCCCccccccCCC----CCCCCCCCccccC
Q 029750 81 KAEKGWWKKLLRGDGK----TP-----------HYVKVDWDKWVDEDEDNGA----GDLDLGGMDFSNF 130 (188)
Q Consensus 81 K~~~~~WprL~k~~~k----k~-----------~~lkvDwdkw~DEddee~~----~~~~~~~~df~~~ 130 (188)
|.+...|..|.+++.. ++ .-.+.|||+..-|++-+++ ++++++.| |++|
T Consensus 80 K~~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~l-F~ki 147 (196)
T KOG1309|consen 80 KAEIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKL-FQKI 147 (196)
T ss_pred cccchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHH-HHHH
Confidence 9888899999964431 01 1137899999865544322 25678888 9997
No 10
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.73 E-value=5.5e-17 Score=112.73 Aligned_cols=75 Identities=28% Similarity=0.446 Sum_probs=66.9
Q ss_pred CCeEEEecCCeEEEEEEcCCC----CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029750 5 PEVKWAQRQDKVFITVQLPDA----KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (188)
Q Consensus 5 P~v~WaQr~~~V~LtI~l~d~----kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~Lk 80 (188)
|+|.|+|+.+.|+|+|.+++. ++++|+|+++ +|.|++..+. ++.|.++++||++|+|++|+|++.+++|+|+|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~-~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGD-GKEYLLEGELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETT-SCEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccC-CceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence 899999999999999999664 6999999998 9999987443 389999999999999999999999999999999
Q ss_pred e
Q 029750 81 K 81 (188)
Q Consensus 81 K 81 (188)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 8
No 11
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.72 E-value=2.8e-17 Score=115.53 Aligned_cols=76 Identities=24% Similarity=0.399 Sum_probs=67.2
Q ss_pred EEecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCCCc
Q 029750 9 WAQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGW 86 (188)
Q Consensus 9 WaQr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~~~~ 86 (188)
|+|+.+.|+|+|.+++++ ++.|.++++ .|.|++ ..|.+.++||++|+|++|++++.+++|+|+|+|+++++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~ 73 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGI 73 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCc
Confidence 999999999999999985 666777766 666654 46999999999999999999999999999999998889
Q ss_pred cccee
Q 029750 87 WKKLL 91 (188)
Q Consensus 87 WprL~ 91 (188)
||||.
T Consensus 74 W~~L~ 78 (78)
T cd06469 74 WEALC 78 (78)
T ss_pred ccccC
Confidence 99984
No 12
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.72 E-value=4.7e-17 Score=116.10 Aligned_cols=80 Identities=30% Similarity=0.543 Sum_probs=72.0
Q ss_pred eEEEecCCeEEEEEEcCCC---CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecC-ceEEEEEEeC
Q 029750 7 VKWAQRQDKVFITVQLPDA---KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGV-RSIFCIVEKA 82 (188)
Q Consensus 7 v~WaQr~~~V~LtI~l~d~---kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~-rkIei~LkK~ 82 (188)
|.|+|+.+.|+|+|.+++. ++++|+|+++ +|+|++. +..+.+.+.||++|+|++|+|++.+ ++|+|+|+|+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~----~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVK----GGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEEC----CCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEEC
Confidence 6899999999999999864 7999999998 9999984 2457788999999999999999999 9999999999
Q ss_pred CC-Cccccee
Q 029750 83 EK-GWWKKLL 91 (188)
Q Consensus 83 ~~-~~WprL~ 91 (188)
++ .+||+|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06467 76 NEGEWWPSLV 85 (85)
T ss_pred CCCccccccC
Confidence 87 6999984
No 13
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.72 E-value=6.4e-17 Score=113.03 Aligned_cols=81 Identities=37% Similarity=0.585 Sum_probs=74.4
Q ss_pred EEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCC-C
Q 029750 9 WAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEK-G 85 (188)
Q Consensus 9 WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~~-~ 85 (188)
|+|+.+.|+|+|.++++ +++.|.|+++ +|+|++.. ..+..|.+.+.||++|+|++|+|++.+++|+|+|+|+.+ .
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~-~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~ 78 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKG-GGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGE 78 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeC-CCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCC
Confidence 99999999999999998 7999999988 99999873 235789999999999999999999999999999999987 7
Q ss_pred ccccee
Q 029750 86 WWKKLL 91 (188)
Q Consensus 86 ~WprL~ 91 (188)
+|++|+
T Consensus 79 ~W~~l~ 84 (84)
T cd06463 79 WWPRLE 84 (84)
T ss_pred CCcccC
Confidence 999984
No 14
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.69 E-value=2e-16 Score=114.07 Aligned_cols=80 Identities=21% Similarity=0.458 Sum_probs=68.5
Q ss_pred eEEEecCCeEEEEEEcC-CC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEec-CceEEEEEEeC
Q 029750 7 VKWAQRQDKVFITVQLP-DA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVG-VRSIFCIVEKA 82 (188)
Q Consensus 7 v~WaQr~~~V~LtI~l~-d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~-~rkIei~LkK~ 82 (188)
|.|+||.+.|+|+|+++ ++ ++++|+|+++ +|.|.+. ++ ...+.++||+.|+|++|+|++. +++|+|+|.|+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~---~~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALK---DQ-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeC---CC-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence 68999999999999997 43 7999999998 9999863 22 3448889999999999999995 56899999999
Q ss_pred CCC-ccccee
Q 029750 83 EKG-WWKKLL 91 (188)
Q Consensus 83 ~~~-~WprL~ 91 (188)
+++ +||+|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06493 76 DEGPTWPELV 85 (85)
T ss_pred CCCccccccC
Confidence 855 999984
No 15
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.59 E-value=8.6e-15 Score=106.45 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=66.4
Q ss_pred eEEEecCCeEEEEEEcCC--CCcce--EEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEec--CceEEEEEE
Q 029750 7 VKWAQRQDKVFITVQLPD--AKNAK--VNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVG--VRSIFCIVE 80 (188)
Q Consensus 7 v~WaQr~~~V~LtI~l~d--~kd~k--V~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~--~rkIei~Lk 80 (188)
|+|||+.+.|+|+|+.+. ..+.. +.+..+ +|++++..+ +..|.++++||++|+|+. ++++. ++||+|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~ 76 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLK 76 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEE
Confidence 589999999999999884 44444 555666 888888744 677999999999998765 88887 569999999
Q ss_pred eCCCCcccce
Q 029750 81 KAEKGWWKKL 90 (188)
Q Consensus 81 K~~~~~WprL 90 (188)
|+++..|++|
T Consensus 77 K~e~~~W~~L 86 (87)
T cd06490 77 KKEPEKWTSL 86 (87)
T ss_pred cCCCCccccC
Confidence 9998899998
No 16
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.59 E-value=9.6e-15 Score=106.38 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=70.2
Q ss_pred eEEEecCCeEEEEEEcCC-----CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecC-ceEEEEEE
Q 029750 7 VKWAQRQDKVFITVQLPD-----AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGV-RSIFCIVE 80 (188)
Q Consensus 7 v~WaQr~~~V~LtI~l~d-----~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~-rkIei~Lk 80 (188)
|.|.||.+.|+|+|.++. +++++|+|+++ +|++..+ ++.+.++.+||++|+|++|+|++.+ +.|.|+|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~----g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~ 75 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLK----GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLE 75 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEEC----CCceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence 689999999999999953 47999999999 9999874 4467799999999999999999976 67999999
Q ss_pred eCCC-Cccccee
Q 029750 81 KAEK-GWWKKLL 91 (188)
Q Consensus 81 K~~~-~~WprL~ 91 (188)
|... .|||+|+
T Consensus 76 K~~~~~wW~~l~ 87 (87)
T cd06492 76 KINKMEWWSRLV 87 (87)
T ss_pred ECCCCccccccC
Confidence 9864 6999984
No 17
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.58 E-value=2.1e-14 Score=107.69 Aligned_cols=91 Identities=21% Similarity=0.427 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCeEEEEEEcCC----CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecC-ceEEE
Q 029750 3 RVPEVKWAQRQDKVFITVQLPD----AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGV-RSIFC 77 (188)
Q Consensus 3 ~~P~v~WaQr~~~V~LtI~l~d----~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~-rkIei 77 (188)
.++.|.|.|+.+.|.|+|.+|. +++++|+|+++ +|.|..+.+ ++..-.++.+||++|++++|.|++.+ ..|.|
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~-~~~~~~i~G~L~~~V~~des~Wtled~~~l~I 80 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDG-GGEKVLMEGEFTHKINTENSLWSLEPGKCVLL 80 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecC-CCCceEEeCcccCcccCccceEEEeCCCEEEE
Confidence 4678999999999999999995 36999999999 999998632 22223589999999999999999987 55899
Q ss_pred EEEeCCCCcccceecCCC
Q 029750 78 IVEKAEKGWWKKLLRGDG 95 (188)
Q Consensus 78 ~LkK~~~~~WprL~k~~~ 95 (188)
+|.|....||++|.++..
T Consensus 81 ~L~K~~~~wW~~v~~g~~ 98 (102)
T cd06495 81 SLSKCSEVWWNAVLKGEE 98 (102)
T ss_pred EEEECCCcccchhhCCCC
Confidence 999987789999999875
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.57 E-value=1.8e-14 Score=106.40 Aligned_cols=83 Identities=34% Similarity=0.519 Sum_probs=72.1
Q ss_pred CCCCeEEEecCCeEEEEEEcCC---CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCce-EEEE
Q 029750 3 RVPEVKWAQRQDKVFITVQLPD---AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRS-IFCI 78 (188)
Q Consensus 3 ~~P~v~WaQr~~~V~LtI~l~d---~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rk-Iei~ 78 (188)
.++.|.|+|+.+.|+|+|.++. .++++|.|+++ +|.+.++ +.. .++.+||+.|+|++|+|++.+++ |+|.
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~----g~~-~l~G~L~~~I~~destWtled~k~l~I~ 77 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVK----GQE-VLKGKLFDSVVADECTWTLEDRKLIRIV 77 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEEC----CEE-EEcCcccCccCcccCEEEEECCcEEEEE
Confidence 4689999999999999999885 37999999999 9999874 344 58889999999999999999888 6999
Q ss_pred EEeCCCC---ccccee
Q 029750 79 VEKAEKG---WWKKLL 91 (188)
Q Consensus 79 LkK~~~~---~WprL~ 91 (188)
|.|.+.. +|++|+
T Consensus 78 L~K~~~~~~~~W~sl~ 93 (93)
T cd06494 78 LTKSNRDAGNCWKSLL 93 (93)
T ss_pred EEeCCCCCCccccccC
Confidence 9998643 899884
No 19
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=111.08 Aligned_cols=90 Identities=27% Similarity=0.351 Sum_probs=80.6
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029750 3 RVPEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (188)
Q Consensus 3 ~~P~v~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~Lk 80 (188)
...|++|.|+...|+|+|+.+.. ....|+.++. .|++++..+.++..|.++++|++.|++++|.+.+..++|+|+|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 35799999999999999999986 3456777766 89999887777789999999999999999999999999999999
Q ss_pred eCCCCcccceecC
Q 029750 81 KAEKGWWKKLLRG 93 (188)
Q Consensus 81 K~~~~~WprL~k~ 93 (188)
|++++.|+||...
T Consensus 292 k~ep~sWa~Le~p 304 (320)
T KOG1667|consen 292 KAEPGSWARLEFP 304 (320)
T ss_pred ccCCCCcccccCC
Confidence 9999999999875
No 20
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.33 E-value=2e-12 Score=104.85 Aligned_cols=120 Identities=18% Similarity=0.334 Sum_probs=89.8
Q ss_pred CCCCeEEEecCCeEEEEEEcCC----CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceE-EE
Q 029750 3 RVPEVKWAQRQDKVFITVQLPD----AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSI-FC 77 (188)
Q Consensus 3 ~~P~v~WaQr~~~V~LtI~l~d----~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkI-ei 77 (188)
..+.|.|+|+-..|.|.|.|+. +++++|.|..+ +|.+..+ +....++.+||++|++++|.|+|.++++ .+
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~-hI~V~~k----g~~~ildG~L~~~vk~des~WtiEd~k~i~i 91 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSK-HIKVGLK----GQPPILDGELSHSVKVDESTWTIEDGKMIVI 91 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeee-EEEEecC----CCCceecCccccccccccceEEecCCEEEEE
Confidence 4589999999999999998885 36899999988 8888874 4456799999999999999999987665 55
Q ss_pred EEEeCC-CCcccceecCCCCCCCceeecC-CCCccccccCCCCCCCCCCCccccC
Q 029750 78 IVEKAE-KGWWKKLLRGDGKTPHYVKVDW-DKWVDEDEDNGAGDLDLGGMDFSNF 130 (188)
Q Consensus 78 ~LkK~~-~~~WprL~k~~~kk~~~lkvDw-dkw~DEddee~~~~~~~~~~df~~~ 130 (188)
.|+|.. ..||.||+.+.. .+..-+++- .+-...-+++.- +-..+|+|++.
T Consensus 92 ~l~K~~~~eWW~~ll~gep-~ID~~ki~~e~skl~dldeEtr--a~vekmmfdq~ 143 (179)
T KOG2265|consen 92 LLKKSNKMEWWDSLLEGEP-EIDTKKIEPEESKLSDLDEETR--ATVEKMMFDQR 143 (179)
T ss_pred EeeccchHHHHHHHHcCCC-CCCccccChhhhhhhhccHHHH--HhhhccchhHH
Confidence 666655 479999999987 566667777 433333332211 22346777764
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.14 E-value=4.2e-10 Score=76.28 Aligned_cols=72 Identities=29% Similarity=0.438 Sum_probs=65.0
Q ss_pred EEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC------CCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029750 9 WAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA------ENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (188)
Q Consensus 9 WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~------~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~Lk 80 (188)
|+|+.+.|+|+|.+++. +++.|.++.+ .|.|++.... ....|.+.+.|+++|+|+.+++++.++.|+|.|+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 99999999999999998 6899999987 9999987532 2478999999999999999999999999999998
Q ss_pred e
Q 029750 81 K 81 (188)
Q Consensus 81 K 81 (188)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=98.90 E-value=2e-09 Score=88.24 Aligned_cols=84 Identities=20% Similarity=0.397 Sum_probs=76.5
Q ss_pred CeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEe-ccccccccCceEEecCceEEEEEEeC
Q 029750 6 EVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDKVNVEESKINVGVRSIFCIVEKA 82 (188)
Q Consensus 6 ~v~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le-Lf~~I~peeSk~~v~~rkIei~LkK~ 82 (188)
.|-|-|+++.|-+.|.|.++ .+|+|.|++. +|.+.+. ..+|+.|.+.+. |+++|.|+.|+.+|....|.|.++|.
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~-dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVH-DLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEeccc-ceeeeee-ecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence 37799999999999999998 5899999999 9888875 568899999997 99999999999999999999999888
Q ss_pred CCCccccee
Q 029750 83 EKGWWKKLL 91 (188)
Q Consensus 83 ~~~~WprL~ 91 (188)
+..+|.-|+
T Consensus 154 e~~rwd~Lt 162 (224)
T KOG3260|consen 154 ENTRWDYLT 162 (224)
T ss_pred hcccchHHH
Confidence 888999997
No 23
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.72 E-value=2.2e-09 Score=93.09 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=91.5
Q ss_pred CeEEEecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029750 6 EVKWAQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (188)
Q Consensus 6 ~v~WaQr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~ 83 (188)
+|.|+|++..+.|-|+-+.+. +|.+-++++ .|+++.+....+-.+.+.+.||++|.|+.+.+++.+.+++++|+|.+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhh
Confidence 567777888888888778775 555566777 89999874434456777888999999999999999988999999998
Q ss_pred CCcccceecCCCC-----------------CCCceeecCCCCccccccCCCCCCCCCCCccccC
Q 029750 84 KGWWKKLLRGDGK-----------------TPHYVKVDWDKWVDEDEDNGAGDLDLGGMDFSNF 130 (188)
Q Consensus 84 ~~~WprL~k~~~k-----------------k~~~lkvDwdkw~DEddee~~~~~~~~~~df~~~ 130 (188)
...|..|.+.-.. +...-+.||+...-+++-+++..-.|..| ||++
T Consensus 257 ~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps~~dsl-Fqkl 319 (368)
T COG5091 257 MVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPSVMDSL-FQKL 319 (368)
T ss_pred hhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCchHHHHH-HHHH
Confidence 8899999854220 12236899999886666555433335556 8886
No 24
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=98.09 E-value=7.5e-06 Score=75.27 Aligned_cols=88 Identities=20% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCCCCeEEEecCCeEEEEEEcCCC---CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecC-ceEE
Q 029750 1 MSRVPEVKWAQRQDKVFITVQLPDA---KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGV-RSIF 76 (188)
Q Consensus 1 ms~~P~v~WaQr~~~V~LtI~l~d~---kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~-rkIe 76 (188)
|-.+|.|.|.|+.+.+.+++.++.. ++..|.+-++ +|.+... -.-.|+.+||+.|.-+.|.|.|.. ++++
T Consensus 286 ~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~-~v~v~~~-----dh~~~~g~lyasv~he~s~~ii~ean~Le 359 (596)
T KOG4379|consen 286 NGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKT-TVVVKHL-----DHVIFDGELYASVGHELSAFIIAEANGLE 359 (596)
T ss_pred ccCCccceeeeccCcceEEEecccccccceEEEEecCc-eEEEEee-----eeEEeccchhhhccccchhhhhhhhccce
Confidence 4578999999999999999999963 4667777766 7765542 234588999999999999999964 9999
Q ss_pred EEEEeCCC-CcccceecCC
Q 029750 77 CIVEKAEK-GWWKKLLRGD 94 (188)
Q Consensus 77 i~LkK~~~-~~WprL~k~~ 94 (188)
+.|.|++. ..||||...+
T Consensus 360 ~sl~K~de~~twprL~~~d 378 (596)
T KOG4379|consen 360 LSLTKADEIQTWPRLFAQD 378 (596)
T ss_pred EEEeecccccccchheeec
Confidence 99999854 5799998665
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00041 Score=54.53 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=68.5
Q ss_pred CCCCeEEEecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCC--------------CceEEEEEeccccccccCc
Q 029750 3 RVPEVKWAQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAE--------------NHLYELKLELFDKVNVEES 66 (188)
Q Consensus 3 ~~P~v~WaQr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~~--------------~~~Y~~~leLf~~I~peeS 66 (188)
..|.|..+++.+.+.|++.|++++ +++|.++.+ .|++++..... ...|+-.+.|...|+|+..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 469999999999999999999984 888888877 99999974321 2457778999999999988
Q ss_pred eEEecCceEEEEEEeCCC
Q 029750 67 KINVGVRSIFCIVEKAEK 84 (188)
Q Consensus 67 k~~v~~rkIei~LkK~~~ 84 (188)
+.+....-+.|+|.|..+
T Consensus 118 ~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEeeCcEEEEEEecccc
Confidence 888888889999999764
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.66 E-value=0.00063 Score=49.24 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=60.6
Q ss_pred CeEEEecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC----C----------CceEEEEEeccccccccCceEE
Q 029750 6 EVKWAQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA----E----------NHLYELKLELFDKVNVEESKIN 69 (188)
Q Consensus 6 ~v~WaQr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~----~----------~~~Y~~~leLf~~I~peeSk~~ 69 (188)
++.|+.+.+.+.|.+.||+++ ++.|.+..++.|++++.... . ...|.-.+.|-..|+++..+.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 478999999999999999984 77888875337999886311 0 1257777889999999988888
Q ss_pred ecCceEEEEEEe
Q 029750 70 VGVRSIFCIVEK 81 (188)
Q Consensus 70 v~~rkIei~LkK 81 (188)
....-+.|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 888888999876
No 27
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.37 E-value=0.0033 Score=45.31 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCeEEEecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC------C-C---------ceEEEEEeccccccccCc
Q 029750 5 PEVKWAQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA------E-N---------HLYELKLELFDKVNVEES 66 (188)
Q Consensus 5 P~v~WaQr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~------~-~---------~~Y~~~leLf~~I~peeS 66 (188)
|++.++++.+.+.|.+.||+++ +++|.+..+ .|++++.... . + ..|.-.+.|- .|+++..
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 5789999999999999999984 888888876 9999886321 0 0 1244446664 7999888
Q ss_pred eEEecCceEEEEEEe
Q 029750 67 KINVGVRSIFCIVEK 81 (188)
Q Consensus 67 k~~v~~rkIei~LkK 81 (188)
+.+.....+.|+|.|
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 888888888999876
No 28
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.36 E-value=0.0022 Score=44.69 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=60.4
Q ss_pred EEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC-------------CceEEEEEeccccccccCceEEecCc
Q 029750 9 WAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE-------------NHLYELKLELFDKVNVEESKINVGVR 73 (188)
Q Consensus 9 WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~-------------~~~Y~~~leLf~~I~peeSk~~v~~r 73 (188)
++++.+.+.|.|.++++ ++++|.+..+ .|.+++..... ...|.-.+.|-..|+++..+..+...
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 67889999999999998 4788888876 99999874211 35688899999999999999999888
Q ss_pred eEEEEEEe
Q 029750 74 SIFCIVEK 81 (188)
Q Consensus 74 kIei~LkK 81 (188)
.+.|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 88998875
No 29
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.20 E-value=0.011 Score=43.02 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=59.1
Q ss_pred EEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeC---CCC---------ceEEEEEeccccccccCceEEecCc
Q 029750 8 KWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAG---AEN---------HLYELKLELFDKVNVEESKINVGVR 73 (188)
Q Consensus 8 ~WaQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~---~~~---------~~Y~~~leLf~~I~peeSk~~v~~r 73 (188)
+|.++.+.+.|.+.|++. .+++|.+..+ .|.+++... .++ ..|.-.+.|-..|+++..+.++...
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 588999999999999997 4888999877 999998743 111 3566678899999999999999888
Q ss_pred eEEEEEEeCCC
Q 029750 74 SIFCIVEKAEK 84 (188)
Q Consensus 74 kIei~LkK~~~ 84 (188)
.+.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999653
No 30
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.44 E-value=0.034 Score=39.38 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=54.4
Q ss_pred CeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCCC-------ceEEEEEeccccccccCceEEecC-ceEEEEEEe
Q 029750 14 DKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAEN-------HLYELKLELFDKVNVEESKINVGV-RSIFCIVEK 81 (188)
Q Consensus 14 ~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~~~-------~~Y~~~leLf~~I~peeSk~~v~~-rkIei~LkK 81 (188)
+.+.|++.|++.+ +++|.+..+ .|++++...... ..|.-.+.|-..|+++..+.++.. ..+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 5789999999974 889999876 999998743211 367778899999999999999887 778998876
No 31
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.20 E-value=0.072 Score=38.36 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=55.8
Q ss_pred EecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC--CC-----ceEEEEEeccccccccCceEEe-cCceEEEEE
Q 029750 10 AQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA--EN-----HLYELKLELFDKVNVEESKINV-GVRSIFCIV 79 (188)
Q Consensus 10 aQr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~--~~-----~~Y~~~leLf~~I~peeSk~~v-~~rkIei~L 79 (188)
+.+.+.+.|++.+|+++ +++|++..+ .|++++.+.. .+ ..|.=.+.|-..|++++-+.++ ....+.|+|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 45788999999999984 888888876 9999987422 11 2244567799999999999998 578889998
Q ss_pred Ee
Q 029750 80 EK 81 (188)
Q Consensus 80 kK 81 (188)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 32
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.15 E-value=0.1 Score=37.56 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=56.6
Q ss_pred EEEecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCC---C----ceEEEEEeccccccccCceEEec-CceEEE
Q 029750 8 KWAQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAE---N----HLYELKLELFDKVNVEESKINVG-VRSIFC 77 (188)
Q Consensus 8 ~WaQr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~~---~----~~Y~~~leLf~~I~peeSk~~v~-~rkIei 77 (188)
.++.+.+.+.|++.+|+++ +++|++..+ .|++++.+... + ..|.=.+.|-..|++++.+.++. ...+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 5788999999999999984 788888877 99999985321 1 23666778889999999998886 777777
Q ss_pred EE
Q 029750 78 IV 79 (188)
Q Consensus 78 ~L 79 (188)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 33
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.13 E-value=0.16 Score=36.59 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=53.7
Q ss_pred CCeEEEecC-CeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCC-------------CceEEEEEeccccccccCceE
Q 029750 5 PEVKWAQRQ-DKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAE-------------NHLYELKLELFDKVNVEESKI 68 (188)
Q Consensus 5 P~v~WaQr~-~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~~-------------~~~Y~~~leLf~~I~peeSk~ 68 (188)
|++.=+++. +.+.|++.||+++ +++|.+..+ .|++++..... -..|.-.+.|-..|++. +.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 456666765 8999999999985 778888766 99999863221 13466678888888875 56
Q ss_pred EecCceEEEEEEe
Q 029750 69 NVGVRSIFCIVEK 81 (188)
Q Consensus 69 ~v~~rkIei~LkK 81 (188)
+.....+.|+|.+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 6677777887753
No 34
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=95.81 E-value=0.13 Score=36.88 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=55.4
Q ss_pred ecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC-CC---ceEEEEEeccccccccCceEEe-cCceEEEEEEe
Q 029750 11 QRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA-EN---HLYELKLELFDKVNVEESKINV-GVRSIFCIVEK 81 (188)
Q Consensus 11 Qr~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~-~~---~~Y~~~leLf~~I~peeSk~~v-~~rkIei~LkK 81 (188)
.+.+.+.|++.+|+.+ +++|++..+ .|++++.... .+ ..|.=.+.|-..|+++.-+.++ ....+.|++++
T Consensus 5 e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 5 TLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 4678899999999974 888999877 9999986311 12 3566678899999999999997 67788888864
No 35
>PRK10743 heat shock protein IbpA; Provisional
Probab=95.72 E-value=0.26 Score=38.70 Aligned_cols=75 Identities=11% Similarity=0.232 Sum_probs=58.3
Q ss_pred CCeEEEe-cCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC--CCc----------eEEEEEeccccccccCceEE
Q 029750 5 PEVKWAQ-RQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA--ENH----------LYELKLELFDKVNVEESKIN 69 (188)
Q Consensus 5 P~v~WaQ-r~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~--~~~----------~Y~~~leLf~~I~peeSk~~ 69 (188)
|++.-++ +.+.+.|++.||+++ ++.|.++.+ .|++++.... .+. .|.=.+.|-..|++++ .+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 7888884 899999999999984 888999866 9999986321 111 3445678889999984 56
Q ss_pred ecCceEEEEEEeC
Q 029750 70 VGVRSIFCIVEKA 82 (188)
Q Consensus 70 v~~rkIei~LkK~ 82 (188)
....-+.|+|.|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 6777889999995
No 36
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.68 E-value=0.077 Score=46.16 Aligned_cols=64 Identities=16% Similarity=0.361 Sum_probs=52.4
Q ss_pred cCCeEEEEEEcCCC---CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEe--cCceEEEEEE
Q 029750 12 RQDKVFITVQLPDA---KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINV--GVRSIFCIVE 80 (188)
Q Consensus 12 r~~~V~LtI~l~d~---kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v--~~rkIei~Lk 80 (188)
+...|.|+|.|+++ +++.+++.++ .|.+.+. +..|.|+|.|-.+|+++.++.+. ..+.+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~----~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSED-RLSLSSP----KPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCC-EEEEEeC----CCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 36789999999987 5888999988 9998874 23799999999999999877666 4467788874
No 37
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=95.68 E-value=0.16 Score=36.37 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=55.1
Q ss_pred cCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC--CC-----ceEEEEEeccccccccCceEEec-CceEEEEEEe
Q 029750 12 RQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA--EN-----HLYELKLELFDKVNVEESKINVG-VRSIFCIVEK 81 (188)
Q Consensus 12 r~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~--~~-----~~Y~~~leLf~~I~peeSk~~v~-~rkIei~LkK 81 (188)
+.+.+.|++.+|+.+ +++|++..+ .|++++.+.. .+ ..|.=.+.|-..|+++.-+.+.. ...+.|+|.|
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 467889999999984 888999877 9999997421 11 12555677889999999999996 7888999987
Q ss_pred C
Q 029750 82 A 82 (188)
Q Consensus 82 ~ 82 (188)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 38
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=95.46 E-value=0.15 Score=36.29 Aligned_cols=70 Identities=6% Similarity=0.082 Sum_probs=53.9
Q ss_pred ecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC--CC-----ceEEEEEeccccccccCceEEec-CceEEEEEE
Q 029750 11 QRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA--EN-----HLYELKLELFDKVNVEESKINVG-VRSIFCIVE 80 (188)
Q Consensus 11 Qr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~--~~-----~~Y~~~leLf~~I~peeSk~~v~-~rkIei~Lk 80 (188)
.+.+.+.|++.+|+. .+++|++..+ .|++++.... .+ ..|.=.+.|-..|+++..+.++. ...+.|++.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 457789999999998 4888888877 9999987421 11 23555677889999999998884 777899887
Q ss_pred e
Q 029750 81 K 81 (188)
Q Consensus 81 K 81 (188)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 6
No 39
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=94.82 E-value=0.71 Score=36.54 Aligned_cols=76 Identities=12% Similarity=0.203 Sum_probs=57.3
Q ss_pred CCCeEEEe-cCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC--CC----------ceEEEEEeccccccccCceE
Q 029750 4 VPEVKWAQ-RQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA--EN----------HLYELKLELFDKVNVEESKI 68 (188)
Q Consensus 4 ~P~v~WaQ-r~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~--~~----------~~Y~~~leLf~~I~peeSk~ 68 (188)
.|.+.=++ +.+.+.|++.||+++ ++.|.++.+ .|++++.... .+ ..|.-.+.|-..|+++ +.
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 47777777 467899999999984 788888866 9999986211 11 1355567788899997 46
Q ss_pred EecCceEEEEEEeC
Q 029750 69 NVGVRSIFCIVEKA 82 (188)
Q Consensus 69 ~v~~rkIei~LkK~ 82 (188)
+....-+.|+|.|.
T Consensus 109 ~~~nGVL~I~lPK~ 122 (142)
T PRK11597 109 TFVNGLLHIDLIRN 122 (142)
T ss_pred EEcCCEEEEEEecc
Confidence 66777889999986
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=94.46 E-value=0.39 Score=34.37 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=52.3
Q ss_pred CCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC--CC-----ceEEEEEeccccccccCceEEec-CceEEEEEEe
Q 029750 13 QDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA--EN-----HLYELKLELFDKVNVEESKINVG-VRSIFCIVEK 81 (188)
Q Consensus 13 ~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~--~~-----~~Y~~~leLf~~I~peeSk~~v~-~rkIei~LkK 81 (188)
.+...|++.|++.+ +++|++..+ .|++++.+.. .+ ..|.=.+.|-..|+++.-+.++. ...+.|+|.|
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 56788999999974 888999877 9999997421 11 23444577889999999999996 7788888865
No 41
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=94.29 E-value=0.41 Score=34.46 Aligned_cols=66 Identities=8% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC----C-C------ceEEEEEeccccccccCceEEe-cCceEEEE
Q 029750 13 QDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA----E-N------HLYELKLELFDKVNVEESKINV-GVRSIFCI 78 (188)
Q Consensus 13 ~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~----~-~------~~Y~~~leLf~~I~peeSk~~v-~~rkIei~ 78 (188)
++.+.|++.+|+. ++++|++..+ .|++++.+.. + + ..|.=.+.|-..|+++..+..+ ....+.|.
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 5678999999997 4888888866 9999987421 1 1 2344567788999999888888 55666776
Q ss_pred E
Q 029750 79 V 79 (188)
Q Consensus 79 L 79 (188)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 5
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=90.44 E-value=5 Score=28.73 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=47.6
Q ss_pred cCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC--CCc-----eEEEEEeccccccccCceEEec-CceEEEE
Q 029750 12 RQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA--ENH-----LYELKLELFDKVNVEESKINVG-VRSIFCI 78 (188)
Q Consensus 12 r~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~--~~~-----~Y~~~leLf~~I~peeSk~~v~-~rkIei~ 78 (188)
..+.+.|++.||+.+ +++|++..+ .|++++.... ... .|.=.+.|-..|+++..+.+.. ..-+.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 456789999999984 888999877 9999997432 112 3344567888999998887763 4545554
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=0.28 Score=40.29 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=9.4
Q ss_pred cccCCCCCCCCCCCCCCCCC
Q 029750 127 FSNFGGMGGDDGMGGFEDSD 146 (188)
Q Consensus 127 f~~~~g~gg~~~~~~~dd~d 146 (188)
|++++++|++++|+++++.+
T Consensus 148 f~~~~~~~~~~d~~d~e~nd 167 (180)
T KOG3158|consen 148 FGVLEGDGADDDMPDSEDND 167 (180)
T ss_pred cccccccccCCCCCCCCccc
Confidence 44444444455555554444
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=88.72 E-value=5.8 Score=28.69 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCC-----CCceE-----EEEEeccccccccCceEEecCc-eEEE
Q 029750 13 QDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGA-----ENHLY-----ELKLELFDKVNVEESKINVGVR-SIFC 77 (188)
Q Consensus 13 ~~~V~LtI~l~d~k--d~kV~~~~~~~l~f~~~~~~-----~~~~Y-----~~~leLf~~I~peeSk~~v~~r-kIei 77 (188)
.+.++|++.||+.+ +++|++..+ .|++++.... ....| .=.+.|-..|++++-+.+.... .+.|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 56899999999984 889999866 9999997421 11122 2356688889999888777654 4444
No 45
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=83.29 E-value=15 Score=26.77 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=49.2
Q ss_pred cCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC----C---ceEEEEEeccccccccCceEEec-CceEEEEE
Q 029750 12 RQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE----N---HLYELKLELFDKVNVEESKINVG-VRSIFCIV 79 (188)
Q Consensus 12 r~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~----~---~~Y~~~leLf~~I~peeSk~~v~-~rkIei~L 79 (188)
+.+.-.|.+.+.+. .+++|++..+ .|.+++++... + ..|.=.+.|-..|+++.-+..+. ...+.|.+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 44567788888886 4889999877 99999986432 1 34555677889999999888887 45556654
No 46
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=77.39 E-value=30 Score=28.56 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=48.1
Q ss_pred EEecCC-eEEEEEEcCCCC--c-ceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029750 9 WAQRQD-KVFITVQLPDAK--N-AKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (188)
Q Consensus 9 WaQr~~-~V~LtI~l~d~k--d-~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~ 83 (188)
=.++.+ .|.|...||++. + +.|.|..+ ...+.+.. +..|.=.+.|-.+ .++..++++...-++|+|++.+
T Consensus 96 tre~dDge~~VvAdLPGVs~dd~idV~l~~d-~~~L~i~~---~~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~ 169 (177)
T PF05455_consen 96 TRERDDGELVVVADLPGVSDDDAIDVTLDDD-EGALTIRV---GEKYLKRVALPWP-DPEITSATFNNGILEIRIRRTE 169 (177)
T ss_pred eEecCCCcEEEEEeCCCCCcccceeeEeecC-CceEEEec---CCceEeeEecCCC-ccceeeEEEeCceEEEEEeecC
Confidence 344556 688999999994 4 67888765 33444431 2335557777777 4676677788888899999965
No 47
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=50.74 E-value=35 Score=26.08 Aligned_cols=44 Identities=2% Similarity=0.142 Sum_probs=28.9
Q ss_pred CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeC
Q 029750 26 KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKA 82 (188)
Q Consensus 26 kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~ 82 (188)
..+.++|..+|.|+++.. .++.... + ..+|++.+++|.++|+=.
T Consensus 34 ~~~~leF~~dGKL~v~~g--nng~~~~----~-------~Gty~L~G~kLtL~~~p~ 77 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIG--EKGKEVK----A-------DGTYKLDGNKLTLTLKAG 77 (111)
T ss_pred CceEEEEcCCCeEEEecC--CCCcEec----c-------CceEEEECCEEEEEEcCC
Confidence 577899988888888874 2332111 1 467888888777766553
No 48
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=43.09 E-value=1.3e+02 Score=21.92 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=38.8
Q ss_pred CCeEEEecC-CeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEE-EEeccccccccCceEEe
Q 029750 5 PEVKWAQRQ-DKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYEL-KLELFDKVNVEESKINV 70 (188)
Q Consensus 5 P~v~WaQr~-~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~-~leLf~~I~peeSk~~v 70 (188)
|..-|+-=. ..|-|-|+=+++...+|.++.. .|.+.-.+..++.+|.| .|++- ...|..-..++
T Consensus 4 P~~WW~GMk~~~LQLmvyG~nI~~~~v~i~~~-gV~i~~v~~~~npNYLFv~L~i~-~akpg~~~i~~ 69 (88)
T PF09087_consen 4 PPNWWVGMKNPELQLMVYGKNIASAEVSISYP-GVTIKKVVKTDNPNYLFVYLDIS-DAKPGTFTINF 69 (88)
T ss_dssp SSEEETT-SS-EEEEEEESTTGGGSEEEE-BT-TEEEEEEEE-SSTTEEEEEEEE--T--SEEEEEEE
T ss_pred CCchhcCCCCCcEEEEEecCCcccCEEEEeCC-CeEEEEEEecCCCCEEEEEEecC-CCCCcEEEEEE
Confidence 666676433 3678888888898999999865 67776555566777866 45555 66665444443
No 49
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=42.98 E-value=73 Score=21.23 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=24.7
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE 56 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le 56 (188)
+|.+.|+...................+.+.++++|.|......+.-.|.+...
T Consensus 12 ~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 64 (79)
T cd05734 12 PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVS 64 (79)
T ss_pred CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEE
Confidence 58899987544322111101012233444444467665432233456766543
No 50
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=38.43 E-value=8.8 Score=25.07 Aligned_cols=10 Identities=80% Similarity=1.584 Sum_probs=8.3
Q ss_pred eecCCCCccc
Q 029750 102 KVDWDKWVDE 111 (188)
Q Consensus 102 kvDwdkw~DE 111 (188)
++||++|+.-
T Consensus 17 kvdWd~wvSf 26 (49)
T PF06543_consen 17 KVDWDKWVSF 26 (49)
T ss_pred ccchHHheee
Confidence 6999999943
No 51
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=38.38 E-value=71 Score=22.09 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=30.3
Q ss_pred ceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029750 49 HLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (188)
Q Consensus 49 ~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~ 83 (188)
..|.+.++|-+ +.|++-++.+.++.+.|.-++..
T Consensus 7 ~~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 7 EKFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eeEEEEEECCC-CCHHHcEEEEECCEEEEEEEEee
Confidence 58999999998 99999999999999999988754
No 52
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=35.75 E-value=1.2e+02 Score=25.04 Aligned_cols=79 Identities=28% Similarity=0.410 Sum_probs=56.9
Q ss_pred CeEE--EecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC----------------CceEEEEEeccccccccC
Q 029750 6 EVKW--AQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE----------------NHLYELKLELFDKVNVEE 65 (188)
Q Consensus 6 ~v~W--aQr~~~V~LtI~l~d~--kd~kV~~~~~~~l~f~~~~~~~----------------~~~Y~~~leLf~~I~pee 65 (188)
++.| ....+...+.+.+|+. .+++|.++..+.+.+++..... -..|.-.+.|-..|+.++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 4567 7888889999999997 4888888876348777652110 013445677888888887
Q ss_pred ceEEecCceEEEEEEeCCC
Q 029750 66 SKINVGVRSIFCIVEKAEK 84 (188)
Q Consensus 66 Sk~~v~~rkIei~LkK~~~ 84 (188)
-+..+...-+.|++.|..+
T Consensus 164 ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHhhCCeEEEEEecccc
Confidence 7777777778899988654
No 53
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=35.06 E-value=1.5e+02 Score=20.28 Aligned_cols=58 Identities=9% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe-ccccc
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDKV 61 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le-Lf~~I 61 (188)
.|.+.|+.....+.+...-.......+.+...+.|.|.-....+.-.|.+... -++.+
T Consensus 15 ~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 15 QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce
Confidence 47899987655433221101112334555544467766442233446777653 44443
No 54
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=34.78 E-value=1.2e+02 Score=22.16 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=28.1
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCC-ceEEEEEe
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAEN-HLYELKLE 56 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~-~~Y~~~le 56 (188)
.|.|.|. ......|+ .+..|.+..+|.|.|+-....+. ..|.|...
T Consensus 33 ~P~i~W~-~~~~~~i~------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 33 PLRIYWM-NSDLLHIT------QDERVSMGQNGNLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred CCEEEEE-CCCCcccc------ccccEEECCCceEEEEEEehhhCCCCeEEEEE
Confidence 4789999 44333222 24567777677899987633333 36877654
No 55
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=33.91 E-value=87 Score=20.95 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=30.3
Q ss_pred CceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029750 48 NHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (188)
Q Consensus 48 ~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~~ 83 (188)
+..|.+.++|-+ +.|++-..++.++.|.|.-++..
T Consensus 6 ~~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~ 40 (88)
T cd06464 6 DDAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREE 40 (88)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEec
Confidence 357999999998 89999999999999999988864
No 56
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=32.53 E-value=1.8e+02 Score=20.46 Aligned_cols=50 Identities=6% Similarity=0.252 Sum_probs=28.9
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE 56 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le 56 (188)
+|.|.||+....|.-... .....-.+..+ +.|.|......++..|.+...
T Consensus 14 ~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~--s~L~~~~~~~Ddg~~~~C~A~ 63 (80)
T cd05885 14 AATLRWYRDRKELKGVIS-QQENGKTVSVS--NTIRFPVDRKDDGAILSCEAS 63 (80)
T ss_pred CCeEEEEECCEECCCCcc-cccCCceEEEE--EEEEEEeeeccCCcEEEEEEE
Confidence 478999999887642211 11111112222 258887765567788888764
No 57
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=31.17 E-value=3e+02 Score=23.14 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=36.1
Q ss_pred CCeEEEecCC---eEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEE
Q 029750 5 PEVKWAQRQD---KVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKIN 69 (188)
Q Consensus 5 P~v~WaQr~~---~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~ 69 (188)
|-+.|..|.. ..|++|...+. -++.+++. ||.|....+ ....+.+..-|.+.|.+.++-+.
T Consensus 51 ~V~~flhr~~~~~~~F~~i~te~g--~~l~LTp~-HLI~v~~~~-~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 51 PVIMFLHRDPEQRAEFVVIETEDG--RSLTLTPN-HLIFVADCN-GSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp EEEEEEEEEEEEEEEEEEEEETTS---EEEE-TT--EEEEEETT-TTEE---EEEEGGG--TT-EEEE
T ss_pred eEEEEeccCccccEEEEEEEcCCC--CeEEecCC-cEEEEecCC-CCcccccceeehhhCCCCCEEEE
Confidence 4455665543 56777766654 67999999 999998732 22333446778899999999888
No 58
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=30.17 E-value=1.6e+02 Score=19.41 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=10.2
Q ss_pred EEEEEEEeCCCCceEEEEEe
Q 029750 37 VFSFSASAGAENHLYELKLE 56 (188)
Q Consensus 37 ~l~f~~~~~~~~~~Y~~~le 56 (188)
+|.|......+.-.|.+...
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~ 71 (86)
T cd05724 52 NLLIAEARKSDEGTYKCVAT 71 (86)
T ss_pred EEEEeECCcccCEEEEEEEE
Confidence 56665432233346766554
No 59
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=29.46 E-value=1.7e+02 Score=19.14 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=24.9
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe-cccc
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDK 60 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le-Lf~~ 60 (188)
.|.+.|+.....-...+..++.....+.+...++|.|.-....+.-.|.+... .++.
T Consensus 15 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 15 PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce
Confidence 47899997532100111112211122233322356655432234456777654 5554
No 60
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=3.4e+02 Score=21.98 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=48.1
Q ss_pred eEEEEEEcCC--CCcceEEEecCcEEEEEEEeCCC----C---ceEEEEEeccccccccCceEEecC-ceEEEEEEeCC
Q 029750 15 KVFITVQLPD--AKNAKVNLEPEGVFSFSASAGAE----N---HLYELKLELFDKVNVEESKINVGV-RSIFCIVEKAE 83 (188)
Q Consensus 15 ~V~LtI~l~d--~kd~kV~~~~~~~l~f~~~~~~~----~---~~Y~~~leLf~~I~peeSk~~v~~-rkIei~LkK~~ 83 (188)
..-|.+.|.. ...++|++..+ .|.+.++|... | ..|.=.+.|-..|+|+.-+-.+.. ..+.|...|..
T Consensus 73 ~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 73 KFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred cEEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 3445555555 36888888877 99999987532 2 334445679999999998888865 55677777754
No 61
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=23.97 E-value=2.2e+02 Score=18.68 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE 56 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le 56 (188)
.|.+.|+.....+ ....+..+.+..+++|.|.-....+.-.|.+...
T Consensus 12 ~p~v~W~k~~~~~------~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~ 58 (74)
T cd05738 12 DPEITWFKDFLPV------DTTSNGRIKQLRSGALQIENSEESDQGKYECVAT 58 (74)
T ss_pred CCEEEEEECCEEC------ccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEE
Confidence 4789999754322 2112334444444466554322223346766554
No 62
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.56 E-value=66 Score=30.17 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCCCeEEEecCCeEEEEEEcCCCCcceEEE--ecCcEEEEEEEeCCCCceEEEEEeccccccccCc---eEEecCceEEE
Q 029750 3 RVPEVKWAQRQDKVFITVQLPDAKNAKVNL--EPEGVFSFSASAGAENHLYELKLELFDKVNVEES---KINVGVRSIFC 77 (188)
Q Consensus 3 ~~P~v~WaQr~~~V~LtI~l~d~kd~kV~~--~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeS---k~~v~~rkIei 77 (188)
++|++.-.|..+.++|.|..|-..-.++++ ..+ -++|++ .+|-+.+.+-+.+..+.. +|-..++.+.|
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~n-m~~f~~------~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~v 74 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAAN-MASFSA------GPYFLRLAGPGMVEDDARPNASYDAKDGYAHV 74 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHhh-hhhhcc------chhHHhhcCcchhhhhccccCccccccceeEE
Confidence 478999999999999999999654444444 334 677776 257778888887776643 35556788999
Q ss_pred EEEeCCCC-cccce
Q 029750 78 IVEKAEKG-WWKKL 90 (188)
Q Consensus 78 ~LkK~~~~-~WprL 90 (188)
.+.|..++ +.+-|
T Consensus 75 K~~K~~~~e~F~~L 88 (466)
T KOG3247|consen 75 KVPKFHPGEHFSDL 88 (466)
T ss_pred eecCCCccccccch
Confidence 99997643 56655
No 63
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=20.99 E-value=1.9e+02 Score=18.74 Aligned_cols=45 Identities=13% Similarity=0.387 Sum_probs=23.6
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe
Q 029750 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE 56 (188)
Q Consensus 4 ~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~le 56 (188)
.|.+.|+-....|. ....+.+.++++|.|.-....+.-.|.+...
T Consensus 15 ~p~v~W~k~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 59 (73)
T cd04969 15 KPTISWSKGTELLT--------NSSRICIWPDGSLEILNVTKSDEGKYTCFAE 59 (73)
T ss_pred CCEEEEEECCEEcc--------cCCCEEECCCCeEEEccCChhHCEEEEEEEE
Confidence 57899987665432 1223344444466665432223346766654
Done!