Query 029751
Match_columns 188
No_of_seqs 138 out of 1021
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 04:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_Q RPL17, 60S ribosomal pr 100.0 2.8E-62 9.6E-67 402.6 15.3 164 1-165 3-166 (183)
2 3iz5_V 60S ribosomal protein L 100.0 1.4E-62 4.9E-67 401.2 12.6 168 1-168 1-168 (171)
3 3u5e_P L20A, YL17, 60S ribosom 100.0 8.8E-62 3E-66 400.3 13.9 163 1-164 1-163 (184)
4 2zkr_r 60S ribosomal protein L 100.0 4.4E-61 1.5E-65 396.3 15.2 163 1-164 1-163 (184)
5 1vq8_R 50S ribosomal protein L 100.0 2.8E-58 9.5E-63 370.9 12.1 152 2-157 3-154 (155)
6 3j21_S 50S ribosomal protein L 100.0 2E-58 6.8E-63 371.7 10.9 150 2-155 5-154 (155)
7 3r8s_S 50S ribosomal protein L 100.0 4.1E-41 1.4E-45 257.0 10.1 109 13-154 1-110 (110)
8 2ftc_M Mitochondrial ribosomal 100.0 2.1E-39 7E-44 247.6 11.9 107 18-157 2-110 (110)
9 2zjr_P 50S ribosomal protein L 100.0 5.1E-40 1.7E-44 259.0 8.0 112 12-156 21-133 (134)
10 1i4j_A 50S ribosomal protein L 100.0 1.9E-39 6.6E-44 247.8 10.5 108 13-156 1-109 (110)
11 3bbo_U Ribosomal protein L22; 100.0 3.2E-40 1.1E-44 274.1 0.7 124 2-158 19-143 (199)
12 4fxe_A Antitoxin RELB; toxin/a 67.2 11 0.00037 26.3 5.1 34 28-62 15-48 (79)
13 3lvl_A NIFU-like protein; prot 52.5 18 0.00063 27.0 4.5 70 14-106 56-125 (129)
14 3k2t_A LMO2511 protein; lister 48.5 8.4 0.00029 25.4 1.8 16 36-51 10-25 (57)
15 3ka5_A Ribosome-associated pro 42.4 12 0.00041 25.4 1.8 16 36-51 10-25 (65)
16 2d9i_A NEDD4-binding protein 2 27.3 28 0.00096 24.2 1.8 19 36-54 13-31 (96)
17 4eb5_C NIFU protein (NIFU-1); 25.7 2.3E+02 0.0078 21.8 7.6 69 15-105 51-119 (153)
18 3fau_A NEDD4-binding protein 2 25.1 33 0.0011 23.1 1.8 19 36-54 5-23 (82)
19 2z7e_A ISCU protein, NIFU-like 25.0 93 0.0032 24.1 4.6 71 14-106 55-125 (157)
20 2qq4_A Iron-sulfur cluster bio 22.9 90 0.0031 23.4 4.0 37 15-51 57-93 (138)
21 1xjs_A NIFU-like protein; SR17 22.6 90 0.0031 23.7 4.0 37 14-50 58-94 (147)
22 1su0_B NIFU like protein ISCU; 20.7 1.2E+02 0.004 23.4 4.4 37 14-50 57-93 (159)
No 1
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=2.8e-62 Score=402.61 Aligned_cols=164 Identities=54% Similarity=0.817 Sum_probs=155.0
Q ss_pred CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (188)
Q Consensus 1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~ 80 (188)
|++||++++||+++|+|+++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+||||++|+++ |||.
T Consensus 3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~ 81 (183)
T 4a17_Q 3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT 81 (183)
T ss_dssp CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (188)
Q Consensus 81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~ 160 (188)
+||||+|+|++|++||+||++||+++|||.|+|||+||+||+||+++|++|||+||++++++++|||||+|+|.+++||+
T Consensus 82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k 161 (183)
T 4a17_Q 82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK 161 (183)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchh
Q 029751 161 EVGSL 165 (188)
Q Consensus 161 ~~~~~ 165 (188)
|||+.
T Consensus 162 ~~~~~ 166 (183)
T 4a17_Q 162 EAPKD 166 (183)
T ss_dssp -----
T ss_pred chhhh
Confidence 97754
No 2
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=1.4e-62 Score=401.21 Aligned_cols=168 Identities=83% Similarity=1.222 Sum_probs=163.7
Q ss_pred CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (188)
Q Consensus 1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~ 80 (188)
|++||++++||+++|+|+++++++||+|+++||++||||++++|+.+|++|+++|+||||++|++|+||++|++++|||.
T Consensus 1 m~~Ys~~~~~~~~~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~ 80 (171)
T 3iz5_V 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNG 80 (171)
T ss_dssp CCSCSSCCSCTTTEEEEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCS
T ss_pred CCcccCCCCCCCeeEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999559999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (188)
Q Consensus 81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~ 160 (188)
+||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.++++||
T Consensus 81 ~gr~PkKaa~~ilklL~sA~aNAe~kglD~d~L~I~~i~vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 160 (171)
T 3iz5_V 81 QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 160 (171)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEECCCBCCEEEETTTEEEECCBCEEEEEEEEETTHHHHTT
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEeccCCcccCCCCCCCCCCCcccCCCccEEEEEeecCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhh
Q 029751 161 EVGSLVKV 168 (188)
Q Consensus 161 ~~~~~~~~ 168 (188)
|+|.....
T Consensus 161 ~~~~~~~~ 168 (171)
T 3iz5_V 161 EPESQIAA 168 (171)
T ss_dssp TTCCSSCC
T ss_pred chhhhhhh
Confidence 98866544
No 3
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=8.8e-62 Score=400.34 Aligned_cols=163 Identities=60% Similarity=0.902 Sum_probs=160.0
Q ss_pred CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (188)
Q Consensus 1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~ 80 (188)
|++||++++||+++|+|+++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+||||++|+++ |||+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~-~g~~ 79 (184)
T 3u5e_P 1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKE-FGVT 79 (184)
T ss_dssp -CCCSCCCSCGGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGG-GTCS
T ss_pred CCccCCCCCCCCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhc-cCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (188)
Q Consensus 81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~ 160 (188)
+||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.++++||
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~~v~k 159 (184)
T 3u5e_P 80 KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK 159 (184)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCCCCCC
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccch
Q 029751 161 EVGS 164 (188)
Q Consensus 161 ~~~~ 164 (188)
|+|+
T Consensus 160 ~~~~ 163 (184)
T 3u5e_P 160 AAEK 163 (184)
T ss_dssp CCCC
T ss_pred cHHH
Confidence 9774
No 4
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.4e-61 Score=396.27 Aligned_cols=163 Identities=66% Similarity=1.039 Sum_probs=149.1
Q ss_pred CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (188)
Q Consensus 1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~ 80 (188)
|++||++++||+++++|+++++++||+|+++||++||||++++|+.||++||++|+||||++||+|+||++|+++ |||+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~-~~~~ 79 (184)
T 2zkr_r 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQ-WGWT 79 (184)
T ss_dssp -CCCSSCCSCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTS-CSCS
T ss_pred CCccCCCCCCCCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccc-cccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (188)
Q Consensus 81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~ 160 (188)
+||||+|+|++|++||+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.++.+++
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 159 (184)
T 2zkr_r 80 QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159 (184)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccch
Q 029751 161 EVGS 164 (188)
Q Consensus 161 ~~~~ 164 (188)
|+++
T Consensus 160 ~~~~ 163 (184)
T 2zkr_r 160 PEEE 163 (184)
T ss_dssp ----
T ss_pred chhh
Confidence 8765
No 5
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=2.8e-58 Score=370.87 Aligned_cols=152 Identities=32% Similarity=0.528 Sum_probs=146.8
Q ss_pred ccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCC
Q 029751 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ 81 (188)
Q Consensus 2 ~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~ 81 (188)
++||+ ++||+++++|.++++++||||+++||++||||++++|+.||++|+++|+||||++||+|+||++|+ |||++
T Consensus 3 ~~Ys~-~~~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~---~~~~~ 78 (155)
T 1vq8_R 3 ISYSV-EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA 78 (155)
T ss_dssp CCCSS-CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSSSB
T ss_pred cccCC-CCCCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccc---ccccc
Confidence 68999 889999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCccc
Q 029751 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP 157 (188)
Q Consensus 82 Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~ 157 (188)
||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|+++||++|||+||++++++++|||||+|+|.++.
T Consensus 79 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~~ 154 (155)
T 1vq8_R 79 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVE 154 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC---
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987643
No 6
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2e-58 Score=371.73 Aligned_cols=150 Identities=37% Similarity=0.533 Sum_probs=147.3
Q ss_pred ccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCC
Q 029751 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ 81 (188)
Q Consensus 2 ~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~ 81 (188)
|+||++++||+++++|+++++++||||+++||++||||++++|+.||++|+++|+||||++||+||||++| |||++
T Consensus 5 ~~Ys~~~~~~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~----~~~~~ 80 (155)
T 3j21_S 5 FGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPG----KGFGP 80 (155)
T ss_dssp -CCCSCCCHHHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCS----SSCSB
T ss_pred eecccCCCCCCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccc----cCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCc
Q 029751 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 155 (188)
Q Consensus 82 Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~ 155 (188)
||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.+
T Consensus 81 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~ 154 (155)
T 3j21_S 81 GRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR 154 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 7
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=4.1e-41 Score=257.02 Aligned_cols=109 Identities=26% Similarity=0.349 Sum_probs=106.0
Q ss_pred ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751 13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI 92 (188)
Q Consensus 13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i 92 (188)
|+++|.++++++||+|+++||++||||++++|+.||+ | ||+|+|++|
T Consensus 1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~---------------------------f------~pkkaa~~v 47 (110)
T 3r8s_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILT---------------------------Y------TNKKAAVLV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCHHHHHH
T ss_pred CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHh---------------------------h------CCHHHHHHH
Confidence 5799999999999999999999999999999999999 5 899999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeC
Q 029751 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 154 (188)
Q Consensus 93 ~klL~sA~aNA~~k-glD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~ 154 (188)
+++|+||++||+++ |+|+|+|||+|+|||+||++||++|||+||++++++++|||||+|+|+
T Consensus 48 ~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek 110 (110)
T 3r8s_S 48 KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence 99999999999986 999999999999999999999999999999999999999999999974
No 8
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=2.1e-39 Score=247.62 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=102.5
Q ss_pred eeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHHHHHH
Q 029751 18 RGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLK 97 (188)
Q Consensus 18 ~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~klL~ 97 (188)
..+++++||+|+++||++||||++++|+.||+ | ||+|+|+.|+++|+
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~---------------------------f------~pkkaa~~v~klL~ 48 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLE---------------------------F------NDKKGAKIIKEVLL 48 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHHHHHHH
Confidence 36899999999999999999999999999999 5 89999999999999
Q ss_pred HHHHHHHH-cCCC-CCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCccc
Q 029751 98 NAESNAEV-KGLD-VDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP 157 (188)
Q Consensus 98 sA~aNA~~-kglD-~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~ 157 (188)
||++||++ +|+| +|+|||+|++||+|+++||++|||+||++++++++|||||+|+|.+++
T Consensus 49 sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~GRa~~i~k~~~HI~vvl~e~~~p 110 (110)
T 2ftc_M 49 EAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP 110 (110)
T ss_pred HHHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence 99999998 7999 899999999999999999999999999999999999999999997653
No 9
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=5.1e-40 Score=258.97 Aligned_cols=112 Identities=22% Similarity=0.271 Sum_probs=107.7
Q ss_pred CceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHH
Q 029751 12 TKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKF 91 (188)
Q Consensus 12 ~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~ 91 (188)
+++++|.++++++||+|+++||++||||++++|+.||+ | ||+|+|++
T Consensus 21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~---------------------------f------~pkKaA~~ 67 (134)
T 2zjr_P 21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR---------------------------F------IPRSASEP 67 (134)
T ss_dssp CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH---------------------------H------CCCTTHHH
T ss_pred ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHhHHHH
Confidence 46799999999999999999999999999999999999 4 89999999
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcc
Q 029751 92 ILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156 (188)
Q Consensus 92 i~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~ 156 (188)
|+++|+||.+||++ +|+|+|+|||+|++||+||++||++|||+||++++++++|||+|+|+|.++
T Consensus 68 v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~~ 133 (134)
T 2zjr_P 68 VAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN 133 (134)
T ss_dssp HHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred HHHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEEecCC
Confidence 99999999999995 899999999999999999999999999999999999999999999998653
No 10
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=1.9e-39 Score=247.77 Aligned_cols=108 Identities=26% Similarity=0.304 Sum_probs=104.0
Q ss_pred ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751 13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI 92 (188)
Q Consensus 13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i 92 (188)
|+++|.++++++||+|+++||++||||++++|+.||+ | ||+|+|++|
T Consensus 1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~---------------------------~------~pkkaa~~v 47 (110)
T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR---------------------------Y------TNKRGAYFV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCTTHHHH
T ss_pred CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHH
Confidence 4689999999999999999999999999999999999 4 899999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcc
Q 029751 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156 (188)
Q Consensus 93 ~klL~sA~aNA~~k-glD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~ 156 (188)
+++|+||++||+++ |+|+|+|||+|++||+||+ ++|||+||++++++++|||||+|+|.++
T Consensus 48 ~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~GRa~~i~k~~~HItvvl~e~~~ 109 (110)
T 1i4j_A 48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILGEKHG 109 (110)
T ss_dssp HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCCCCcccccCCeeEEEEEEecCC
Confidence 99999999999986 9999999999999999999 9999999999999999999999998753
No 11
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.2e-40 Score=274.14 Aligned_cols=124 Identities=22% Similarity=0.294 Sum_probs=109.5
Q ss_pred ccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCC
Q 029751 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ 81 (188)
Q Consensus 2 ~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~ 81 (188)
++|+..++|++++++|.++++++||+|+++||++||||++++|+.||+ |
T Consensus 19 y~~~~~~~n~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~---------------------------f---- 67 (199)
T 3bbo_U 19 YGLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILE---------------------------L---- 67 (199)
T ss_dssp -----------CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGG---------------------------G----
T ss_pred ccCCCCCCCCCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHH---------------------------H----
Confidence 467888899999999999999999999999999999999999999999 5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccc
Q 029751 82 GRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV 158 (188)
Q Consensus 82 Gr~pkKaa~~i~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v 158 (188)
+|+|+|.+|+++|+||++||++ +|+|+|+|||+||+||+||++||++|||+||++++++++|||||+|+|.+++.
T Consensus 68 --~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~ 143 (199)
T 3bbo_U 68 --MPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFD 143 (199)
T ss_dssp --CCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCC
T ss_pred --CCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeCCchH
Confidence 7999999999999999999998 69999999999999999999999999999999999999999999999987643
No 12
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=67.19 E-value=11 Score=26.30 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcccccccee
Q 029751 28 NTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTR 62 (188)
Q Consensus 28 K~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~r 62 (188)
.+..|+..+ |++..+|+.++-.-+..++.+||.-
T Consensus 15 ~a~~v~~~l-Gl~~s~Ai~~fl~~v~~~~~iPF~~ 48 (79)
T 4fxe_A 15 RSYAALEKM-GVTPSEALRLMLEYIADNERLPFKQ 48 (79)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCCcc
Confidence 566778887 9999999998877777888889754
No 13
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=52.52 E-value=18 Score=27.04 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=48.7
Q ss_pred eEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHH
Q 029751 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFIL 93 (188)
Q Consensus 14 ~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~ 93 (188)
.++-....--+|--=+-.++++|+|++++||..+...-+...-. + ++ --.++|..-.
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~-------------------l--~p--~r~~Ca~La~ 112 (129)
T 3lvl_A 56 DARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE-------------------L--PP--VKIHCSILAE 112 (129)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHT-------------------C--CG--GGGHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-------------------C--Cc--cchhHHHHHH
Confidence 34555566677777788999999999999999876643322111 1 01 2357888888
Q ss_pred HHHHHHHHHHHHc
Q 029751 94 DLLKNAESNAEVK 106 (188)
Q Consensus 94 klL~sA~aNA~~k 106 (188)
+.|+.|+.+.+.+
T Consensus 113 ~Al~~Al~~y~~k 125 (129)
T 3lvl_A 113 DAIKAAIADYKSK 125 (129)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 14
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=48.51 E-value=8.4 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=13.2
Q ss_pred HhCCCHHHHHHHHHHH
Q 029751 36 LRKLSLTKAKRYLEDV 51 (188)
Q Consensus 36 IrG~~v~~A~~~L~~V 51 (188)
++=|+++||+.||+-+
T Consensus 10 ~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL 25 (57)
T ss_dssp -CCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5679999999999964
No 15
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=42.37 E-value=12 Score=25.39 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=13.3
Q ss_pred HhCCCHHHHHHHHHHH
Q 029751 36 LRKLSLTKAKRYLEDV 51 (188)
Q Consensus 36 IrG~~v~~A~~~L~~V 51 (188)
++=|+++||+.||+.+
T Consensus 10 ~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3568999999999964
No 16
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=27.29 E-value=28 Score=24.24 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.8
Q ss_pred HhCCCHHHHHHHHHHHhhc
Q 029751 36 LRKLSLTKAKRYLEDVMAH 54 (188)
Q Consensus 36 IrG~~v~~A~~~L~~V~~k 54 (188)
+.||+++||+..|+..++.
T Consensus 13 LHGl~v~eA~~~L~~~L~~ 31 (96)
T 2d9i_A 13 LHGLHVDEALEHLMRVLEK 31 (96)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3699999999999877654
No 17
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=25.67 E-value=2.3e+02 Score=21.77 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=46.7
Q ss_pred EEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHHH
Q 029751 15 CKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILD 94 (188)
Q Consensus 15 ~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~k 94 (188)
++-....--+|.-=+-.++++|+|+|+++|..+...-++. .-+|+ ++ .-.+.|..-.+
T Consensus 51 ~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~--------~L~gl------------pp--~Ri~CA~La~~ 108 (153)
T 4eb5_C 51 IKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAE--------ALGGL------------PK--QKMHCSNLAAD 108 (153)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHH--------HHTCC------------CT--TSHHHHHHHHH
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHH--------HhcCC------------Cc--chhHHHHHHHH
Confidence 4455566667777788999999999999999764432111 00111 11 23678888889
Q ss_pred HHHHHHHHHHH
Q 029751 95 LLKNAESNAEV 105 (188)
Q Consensus 95 lL~sA~aNA~~ 105 (188)
.|+.|..+...
T Consensus 109 AL~~Al~~y~~ 119 (153)
T 4eb5_C 109 ALRRAIVDYFR 119 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 18
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=25.08 E-value=33 Score=23.12 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.7
Q ss_pred HhCCCHHHHHHHHHHHhhc
Q 029751 36 LRKLSLTKAKRYLEDVMAH 54 (188)
Q Consensus 36 IrG~~v~~A~~~L~~V~~k 54 (188)
+.||+++||+..|+..+..
T Consensus 5 LHGl~v~eA~~~l~~~l~~ 23 (82)
T 3fau_A 5 LHGLHVDEALEHLMRVLEK 23 (82)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 3699999999999876654
No 19
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=25.01 E-value=93 Score=24.05 Aligned_cols=71 Identities=7% Similarity=-0.041 Sum_probs=47.5
Q ss_pred eEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHH
Q 029751 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFIL 93 (188)
Q Consensus 14 ~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~ 93 (188)
.++-....--+|.-=+-.++.+|+|++++||..+...-+...- + +-++ .-.++|-.-.
T Consensus 55 d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~L--------g------------~l~p--~R~~Ca~La~ 112 (157)
T 2z7e_A 55 DVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEEL--------G------------GLPP--QKIHCTNLGL 112 (157)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHH--------T------------CCCC--SSCCTTCCHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHh--------c------------ccCc--chhHhHHHHH
Confidence 4455667777888888899999999999999987664221110 0 0111 1245666677
Q ss_pred HHHHHHHHHHHHc
Q 029751 94 DLLKNAESNAEVK 106 (188)
Q Consensus 94 klL~sA~aNA~~k 106 (188)
+.|+.|+.++..+
T Consensus 113 ~Al~~Al~~y~~k 125 (157)
T 2z7e_A 113 ETLHVAIKDYLMK 125 (157)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887653
No 20
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=22.93 E-value=90 Score=23.37 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=29.4
Q ss_pred EEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 029751 15 CKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDV 51 (188)
Q Consensus 15 ~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V 51 (188)
++-....--+|--=+-.++++|+|+|++||..+.+..
T Consensus 57 ~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~ 93 (138)
T 2qq4_A 57 IRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKF 93 (138)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455566667777788899999999999999988753
No 21
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=22.64 E-value=90 Score=23.65 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=30.5
Q ss_pred eEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHH
Q 029751 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLED 50 (188)
Q Consensus 14 ~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~ 50 (188)
.++-....--+|--=+-.++++|+|+|++||..+.+.
T Consensus 58 d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~ 94 (147)
T 1xjs_A 58 DAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKI 94 (147)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4566666777777788899999999999999998764
No 22
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=20.66 E-value=1.2e+02 Score=23.40 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=29.9
Q ss_pred eEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHH
Q 029751 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLED 50 (188)
Q Consensus 14 ~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~ 50 (188)
.++-....--+|--=+-.++++|+|++++||..+...
T Consensus 57 d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~ 93 (159)
T 1su0_B 57 DIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADI 93 (159)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3455566667777778889999999999999998775
Done!