RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029751
         (188 letters)



>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score =  158 bits (400), Expect = 1e-50
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60

Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGW---DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
           +  +Q+ R  RA GR + + S    +EL L E
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELILEE 149


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score = 63.3 bits (154), Expect = 3e-14
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 34/139 (24%)

Query: 17  ARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNR 76
           A+    R   +  R  A  +R   +++A   L                            
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILT--------------------------- 33

Query: 77  NPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
                     K+A  +  +L++A +NAE   G D+D L ++ I V++    +R   RA G
Sbjct: 34  ------YTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG 87

Query: 136 RINPYMSSPCHIELTLSEK 154
           R +  +    HI + +S++
Sbjct: 88  RADRILKRTSHITVVVSDR 106


>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score = 62.5 bits (152), Expect = 1e-13
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 34/155 (21%)

Query: 3   KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTR 62
           K  K+     K   A    +R+  +  R     +R  S+  A+  L              
Sbjct: 5   KQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR------------- 51

Query: 63  FCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVN 121
                                 P  +++ +  +L +A++NA     +  D L++    V+
Sbjct: 52  --------------------FIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVD 91

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
                +R   RA G  N       HI + ++EK  
Sbjct: 92  AGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN 126


>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
           subsp. Thermus thermophilus [TaxId: 271]}
          Length = 110

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 37/142 (26%)

Query: 16  KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKN 75
           KA    +R+  +  R     +R  SL +A+  L                           
Sbjct: 4   KAIARYVRISPRKVRLVVDLIRGKSLEEARNILR-------------------------- 37

Query: 76  RNPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAH 134
                      + A F+  +L++A +NA        D LY+    V++      R   A 
Sbjct: 38  -------YTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPR---AR 87

Query: 135 GRINPYMSSPCHIELTLSEKEE 156
           GR +       HI + L EK  
Sbjct: 88  GRADIIKKRTSHITVILGEKHG 109


>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 7   EPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDV 51
               PT +     S   + F +   + +AL  L L K + Y E V
Sbjct: 140 TTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGV 184


>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia
           coli [TaxId: 562]}
          Length = 200

 Score = 25.5 bits (55), Expect = 3.3
 Identities = 5/42 (11%), Positives = 15/42 (35%)

Query: 77  NPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHI 118
           +         + + + ++  +   S  E+   D+ A  I  +
Sbjct: 9   SILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVL 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 664,450
Number of extensions: 27827
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 13
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)