BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029752
         (188 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OGH|A Chain A, Solution Structure Of Yeast Eif1
          Length = 108

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 110 ITTVKGL-ELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 164
           +TTV+G+ E + +K     K L K FA   ++VK P   E I +QGD    + EF+
Sbjct: 39  LTTVQGVPEEYDLK--RILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFM 92


>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
 pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
          Length = 455

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDV-QGDIS 157
           T KGLE  GVK  D SK   K FA   SV    T+ EQ+ + Q +I+
Sbjct: 268 TFKGLEASGVKTCDLSK--SKIFALLKSVFSHFTDLEQLTLAQNEIN 312


>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
           Tlr5
          Length = 407

 Score = 27.3 bits (59), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDV-QGDIS 157
           T KGLE  GVK  D SK   K FA   SV    T+ EQ+ + Q +I+
Sbjct: 268 TFKGLEASGVKTCDLSK--SKIFALLKSVFSHFTDLEQLTLAQNEIN 312


>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
 pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
          Length = 977

 Score = 27.3 bits (59), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 34  PWLIQNTPDLYPDLAEELNSREADKVGEQL 63
           PWL++  P ++ +++EEL +    K G+++
Sbjct: 871 PWLLEAEPQMFCEMSEELATLRGIKNGDKV 900


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,151,776
Number of Sequences: 62578
Number of extensions: 184915
Number of successful extensions: 292
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 8
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)