Query 029752
Match_columns 188
No_of_seqs 206 out of 832
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01159 DRP1 density-regulat 100.0 1.1E-59 2.3E-64 384.6 12.1 167 7-179 1-173 (173)
2 KOG3239 Density-regulated prot 100.0 6.6E-58 1.4E-62 371.1 10.4 172 1-175 1-181 (193)
3 PF01253 SUI1: Translation ini 99.9 4.2E-26 9E-31 166.0 10.1 82 91-173 1-82 (83)
4 COG0023 SUI1 Translation initi 99.9 4.2E-26 9.1E-31 172.7 9.4 80 92-178 24-103 (104)
5 cd00474 SUI1_eIF1 The SUI1/eIF 99.9 3.7E-24 8.1E-29 154.5 8.2 76 96-178 1-76 (77)
6 TIGR01160 SUI1_MOF2 translatio 99.9 2.5E-23 5.5E-28 159.3 9.1 85 93-179 24-108 (110)
7 PRK00939 translation initiatio 99.9 2.4E-23 5.2E-28 156.8 8.3 77 94-177 23-99 (99)
8 TIGR01158 SUI1_rel translation 99.8 3.2E-21 6.8E-26 145.8 8.9 77 93-176 22-99 (101)
9 KOG1770 Translation initiation 99.8 7E-20 1.5E-24 138.3 9.0 86 92-179 25-110 (112)
10 KOG2522 Filamentous baseplate 99.8 9.6E-20 2.1E-24 166.2 6.2 98 89-187 461-559 (560)
11 PRK06824 translation initiatio 99.8 1.1E-18 2.3E-23 135.3 8.1 73 94-173 40-113 (118)
12 PRK07451 translation initiatio 99.8 1.5E-18 3.2E-23 133.9 8.0 74 93-173 36-110 (115)
13 PRK09019 translation initiatio 99.7 3.6E-18 7.9E-23 130.4 7.6 73 93-172 29-102 (108)
14 PF05046 Img2: Mitochondrial l 97.7 0.00016 3.4E-09 53.3 7.5 65 96-167 15-85 (87)
15 smart00653 eIF2B_5 domain pres 93.7 0.19 4.1E-06 38.6 5.6 66 95-168 7-76 (110)
16 KOG4034 Uncharacterized conser 93.7 0.17 3.7E-06 41.4 5.5 71 93-167 94-167 (169)
17 PRK03988 translation initiatio 93.4 0.16 3.4E-06 40.5 4.9 65 94-168 30-98 (138)
18 TIGR00311 aIF-2beta translatio 93.2 0.16 3.5E-06 40.3 4.6 65 94-168 25-93 (133)
19 PRK14434 acylphosphatase; Prov 93.0 0.47 1E-05 35.1 6.6 68 111-179 6-75 (92)
20 PRK14444 acylphosphatase; Prov 92.9 0.58 1.3E-05 34.5 7.0 67 111-179 8-74 (92)
21 PRK14451 acylphosphatase; Prov 92.6 0.59 1.3E-05 34.3 6.6 66 113-180 9-74 (89)
22 PRK14449 acylphosphatase; Prov 92.5 0.65 1.4E-05 34.0 6.7 68 111-180 7-74 (90)
23 PRK14425 acylphosphatase; Prov 92.0 0.59 1.3E-05 34.6 6.1 68 111-180 10-77 (94)
24 PRK14437 acylphosphatase; Prov 91.9 0.72 1.6E-05 35.3 6.5 66 112-179 28-93 (109)
25 PRK14436 acylphosphatase; Prov 91.7 0.9 1.9E-05 33.5 6.7 67 112-180 9-75 (91)
26 PRK14445 acylphosphatase; Prov 91.1 0.86 1.9E-05 33.4 6.1 68 111-180 8-75 (91)
27 PRK14422 acylphosphatase; Prov 91.1 1.2 2.6E-05 32.9 6.9 68 111-180 10-77 (93)
28 PRK14440 acylphosphatase; Prov 91.1 1.2 2.5E-05 32.8 6.7 67 111-179 7-73 (90)
29 PRK14438 acylphosphatase; Prov 90.9 0.95 2.1E-05 33.3 6.1 68 111-180 7-74 (91)
30 PRK14446 acylphosphatase; Prov 90.9 0.85 1.8E-05 33.5 5.8 67 111-179 6-72 (88)
31 PRK14433 acylphosphatase; Prov 90.8 1.1 2.5E-05 32.7 6.4 67 111-179 5-71 (87)
32 PRK14428 acylphosphatase; Prov 90.8 1.2 2.6E-05 33.4 6.7 67 111-179 12-78 (97)
33 PRK14429 acylphosphatase; Prov 90.8 1 2.2E-05 33.0 6.1 67 112-180 7-73 (90)
34 PRK14443 acylphosphatase; Prov 90.7 1 2.2E-05 33.5 6.2 67 111-179 8-75 (93)
35 PRK14420 acylphosphatase; Prov 90.7 1.2 2.6E-05 32.6 6.5 68 111-180 6-73 (91)
36 PF01873 eIF-5_eIF-2B: Domain 90.7 0.25 5.5E-06 38.7 3.0 68 93-168 18-89 (125)
37 PRK14442 acylphosphatase; Prov 90.6 1.3 2.7E-05 32.6 6.6 67 111-179 8-74 (91)
38 PRK14452 acylphosphatase; Prov 90.6 1.5 3.3E-05 33.4 7.2 67 111-179 24-90 (107)
39 PRK14435 acylphosphatase; Prov 90.5 1.2 2.7E-05 32.6 6.4 67 111-179 6-72 (90)
40 PRK14427 acylphosphatase; Prov 90.0 1.3 2.8E-05 32.8 6.2 68 111-180 10-77 (94)
41 PRK14423 acylphosphatase; Prov 89.8 1.3 2.8E-05 32.6 6.1 67 112-180 10-76 (92)
42 PRK14447 acylphosphatase; Prov 89.7 1.5 3.3E-05 32.4 6.4 68 111-180 8-76 (95)
43 PRK14426 acylphosphatase; Prov 89.4 1.8 4E-05 31.8 6.6 66 112-179 9-75 (92)
44 PRK12336 translation initiatio 89.3 0.83 1.8E-05 38.4 5.2 65 94-168 26-94 (201)
45 PRK14421 acylphosphatase; Prov 89.2 1.7 3.7E-05 32.7 6.4 66 112-179 9-74 (99)
46 PRK14441 acylphosphatase; Prov 89.2 1.9 4.2E-05 31.8 6.6 68 111-180 9-76 (93)
47 PF00708 Acylphosphatase: Acyl 89.0 1.4 3E-05 31.9 5.6 67 111-179 8-74 (91)
48 PRK14432 acylphosphatase; Prov 88.3 2.4 5.1E-05 31.4 6.6 68 111-180 6-74 (93)
49 PRK14450 acylphosphatase; Prov 88.3 2.8 6.1E-05 30.6 6.9 66 111-180 6-74 (91)
50 PRK14439 acylphosphatase; Prov 88.0 2.2 4.8E-05 35.1 6.7 69 110-180 78-147 (163)
51 PRK14448 acylphosphatase; Prov 88.0 2.8 6.2E-05 30.7 6.8 67 111-179 6-72 (90)
52 TIGR02174 CXXU_selWTH selT/sel 85.4 0.75 1.6E-05 32.3 2.4 29 8-43 1-29 (72)
53 PRK14424 acylphosphatase; Prov 85.3 4.8 0.0001 29.9 6.8 57 110-168 10-66 (94)
54 PRK14430 acylphosphatase; Prov 84.2 4.9 0.00011 29.6 6.4 67 111-179 8-74 (92)
55 PRK14431 acylphosphatase; Prov 82.0 6.4 0.00014 28.8 6.2 65 112-179 7-72 (89)
56 PF10262 Rdx: Rdx family; Int 77.9 2.2 4.7E-05 30.0 2.5 30 8-44 3-32 (76)
57 COG1254 AcyP Acylphosphatases 76.5 15 0.00033 27.2 6.8 68 111-180 8-75 (92)
58 cd00367 PTS-HPr_like Histidine 51.8 59 0.0013 22.5 5.6 47 110-166 29-75 (77)
59 PRK05412 putative nucleotide-b 49.5 37 0.00081 27.9 4.8 63 107-176 91-157 (161)
60 COG1601 GCD7 Translation initi 48.1 28 0.0006 28.3 3.8 53 104-162 39-95 (151)
61 PF14803 Nudix_N_2: Nudix N-te 44.9 8.7 0.00019 23.5 0.4 11 12-22 2-12 (34)
62 PF00381 PTS-HPr: PTS HPr comp 44.8 50 0.0011 23.2 4.4 40 120-167 41-80 (84)
63 PRK10897 phosphohistidinoprote 42.5 1E+02 0.0022 22.4 5.9 40 121-168 44-83 (90)
64 PF10691 DUF2497: Protein of u 41.1 10 0.00022 27.2 0.3 18 32-49 47-64 (73)
65 COG1872 Uncharacterized conser 39.5 30 0.00066 26.4 2.7 28 152-180 47-74 (102)
66 PF02594 DUF167: Uncharacteris 37.4 44 0.00095 23.9 3.1 27 154-181 39-65 (77)
67 PTZ00450 macrophage migration 35.6 37 0.0008 25.9 2.7 23 156-179 77-99 (113)
68 cd01057 AAMH_A Aromatic and Al 35.3 20 0.00044 33.9 1.4 33 12-45 382-430 (465)
69 PRK13780 phosphocarrier protei 35.0 1.2E+02 0.0026 21.9 5.2 40 120-167 41-80 (88)
70 PF06220 zf-U1: U1 zinc finger 30.7 9.4 0.0002 23.8 -1.1 17 18-40 1-17 (38)
71 COG2126 RPL37A Ribosomal prote 28.5 27 0.00058 24.2 0.7 14 6-19 27-40 (61)
72 TIGR01003 PTS_HPr_family Phosp 28.3 2E+02 0.0042 20.3 5.3 39 121-167 42-80 (82)
73 KOG0023 Alcohol dehydrogenase, 28.1 28 0.00062 32.0 1.0 32 108-144 183-214 (360)
74 PF12674 Zn_ribbon_2: Putative 27.7 27 0.00058 25.3 0.6 13 12-24 2-14 (81)
75 PRK05090 hypothetical protein; 27.6 51 0.0011 24.6 2.2 27 153-180 44-70 (95)
76 TIGR01286 nifK nitrogenase mol 27.5 1E+02 0.0023 29.4 4.8 66 106-173 219-312 (515)
77 PRK01310 hypothetical protein; 27.5 50 0.0011 25.0 2.2 28 152-180 49-76 (104)
78 PF04461 DUF520: Protein of un 27.0 94 0.002 25.5 3.8 63 107-176 91-157 (160)
79 PF09297 zf-NADH-PPase: NADH p 26.5 27 0.00058 20.5 0.4 14 11-24 4-17 (32)
80 TIGR03412 iscX_yfhJ FeS assemb 26.2 53 0.0012 23.0 1.9 24 157-180 5-28 (63)
81 PTZ00397 macrophage migration 26.1 63 0.0014 24.1 2.5 23 156-179 77-99 (116)
82 COG4282 SMI1 Protein involved 26.0 49 0.0011 27.7 1.9 25 28-52 10-34 (191)
83 COG3058 FdhE Uncharacterized p 25.7 30 0.00065 31.1 0.7 13 9-21 184-196 (308)
84 PF11376 DUF3179: Protein of u 25.5 36 0.00078 29.9 1.2 17 6-22 58-74 (266)
85 PF06677 Auto_anti-p27: Sjogre 25.1 31 0.00066 22.0 0.5 10 11-20 18-27 (41)
86 PRK13782 phosphocarrier protei 24.4 2.5E+02 0.0055 19.7 5.3 39 121-167 42-80 (82)
87 PRK10850 PTS system phosphohis 24.3 2.7E+02 0.0059 20.0 5.5 40 121-168 42-81 (85)
88 PRK10721 hypothetical protein; 24.2 68 0.0015 22.7 2.1 24 157-180 8-31 (66)
89 PF10891 DUF2719: Protein of u 24.1 38 0.00082 24.8 0.9 14 6-19 18-31 (81)
90 smart00668 CTLH C-terminal to 23.6 39 0.00084 21.5 0.8 18 26-43 14-31 (58)
91 KOG1493 Anaphase-promoting com 23.6 27 0.00059 25.6 0.1 11 12-22 22-32 (84)
92 PF04216 FdhE: Protein involve 22.8 29 0.00064 30.2 0.1 18 11-28 173-190 (290)
93 PF08421 Methyltransf_13: Puta 22.7 42 0.00092 22.7 0.9 14 5-18 35-48 (62)
94 PF01187 MIF: Macrophage migra 22.7 51 0.0011 24.6 1.4 23 156-179 75-97 (114)
95 PRK00647 hypothetical protein; 22.5 71 0.0015 24.0 2.1 27 153-180 39-65 (96)
96 PF15451 DUF4632: Domain of un 22.2 41 0.00089 23.6 0.7 11 5-15 52-62 (71)
97 cd02394 vigilin_like_KH K homo 21.8 2E+02 0.0044 18.5 4.1 35 128-163 23-57 (62)
98 cd00729 rubredoxin_SM Rubredox 21.7 37 0.0008 20.5 0.4 11 12-22 20-30 (34)
99 PF04739 AMPKBI: 5'-AMP-activa 21.7 1.3E+02 0.0029 22.6 3.5 21 93-113 75-95 (100)
100 PRK15126 thiamin pyrimidine py 21.3 2.3E+02 0.0049 23.7 5.3 60 122-182 154-213 (272)
101 PF11388 DotA: Phagosome traff 20.6 62 0.0013 24.6 1.4 27 112-140 3-29 (105)
102 cd01967 Nitrogenase_MoFe_alpha 20.4 2.2E+02 0.0047 25.6 5.2 65 107-173 160-234 (406)
103 PRK01530 hypothetical protein; 20.2 78 0.0017 24.1 2.0 27 153-180 51-77 (105)
104 PF08282 Hydrolase_3: haloacid 20.2 2.1E+02 0.0046 22.5 4.7 72 109-182 140-211 (254)
No 1
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=100.00 E-value=1.1e-59 Score=384.64 Aligned_cols=167 Identities=44% Similarity=0.742 Sum_probs=141.9
Q ss_pred ceeEEEcCCCCCCccccccCCChhhHHHHHHhhCCCCchHHHhhhhhhhhhhhhhhhhccCCCCC-----CCCC-chhhh
Q 029752 7 PVRVLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLYPDLAEELNSREADKVGEQLQSTGISSP-----ASSA-PKAEE 80 (188)
Q Consensus 7 p~~V~YC~vC~~P~EyCEf~~~~~kCk~wl~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-k~~~k 80 (188)
|++|+||||||||||||||||++++|++||++||||||++||++. .+.+.+...+++.. +.++ +++.+
T Consensus 1 p~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 74 (173)
T TIGR01159 1 PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTD------SPTAEAEAVTIGEAQEEKGEKDLLGIQKA 74 (173)
T ss_pred CceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHHHHHHhhcc------cchhccccchhhHHHHhhhhhhhhHHHhh
Confidence 789999999999999999999999999999999999999999842 22222211112211 1222 23333
Q ss_pred hhcCCCCCCCCCCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHH
Q 029752 81 VKHLPGGKIKKKDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDI 160 (188)
Q Consensus 81 ~~~~~~~~~kk~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v 160 (188)
..+.++++.+|+.+++|+|++++|+|||+||+|+||+.|++||++|||.|+++||||+||++++.++++|+|||||+++|
T Consensus 75 ~~~~~~~~~kK~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v 154 (173)
T TIGR01159 75 QEAREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDI 154 (173)
T ss_pred hhhhhhhhhccCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHH
Confidence 33556678889999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHhhCCCCCCCcEEEc
Q 029752 161 VEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 161 ~~~L~~~~~~ip~~~I~~~ 179 (188)
.+||.++||+||+++|+++
T Consensus 155 ~e~L~~~~~~v~e~~I~~~ 173 (173)
T TIGR01159 155 EDYIHEKWPEVGDKDIKDL 173 (173)
T ss_pred HHHHHHHcCCCCHHHeeeC
Confidence 9999999999999999875
No 2
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=100.00 E-value=6.6e-58 Score=371.13 Aligned_cols=172 Identities=44% Similarity=0.776 Sum_probs=139.7
Q ss_pred CCCCCCcee--EEEcCCCCCCccccccCCChhhHHHHHHhhCCCCchHHHhhhhhhhhhhhhhhhhccCCCCCCCC----
Q 029752 1 MAEKPQPVR--VLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLYPDLAEELNSREADKVGEQLQSTGISSPASS---- 74 (188)
Q Consensus 1 m~~~~~p~~--V~YC~vC~~P~EyCEf~~~~~kCk~wl~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 74 (188)
||+.+.|+. |+|||+||||+|||||+|++++|++||+.||||||++||.+.+..-+...... .+.+.++.+
T Consensus 1 ~a~k~~P~~~~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~~qe~~~s~~---~~a~G~~~e~k~e 77 (193)
T KOG3239|consen 1 MADKLGPRKGSVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDPKQEVEASTA---EGADGEADEKKKE 77 (193)
T ss_pred CCccCCCcccceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccChhhhhccccc---ccccCCchhhHHH
Confidence 888888888 99999999999999999999999999999999999999985432111111000 011111111
Q ss_pred ---CchhhhhhcCCCCCCCCCCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEE
Q 029752 75 ---APKAEEVKHLPGGKIKKKDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQID 151 (188)
Q Consensus 75 ---~k~~~k~~~~~~~~~kk~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~ 151 (188)
++-+.+.+....++.+|+.+++|.|.++.|++||+||+|+||+.|+|||+.+||.|+++||||+||++++.+.+||+
T Consensus 78 k~~gk~~k~~~~~~~~e~~k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIv 157 (193)
T KOG3239|consen 78 KRGGKGQKKQENRSQREKKKRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIV 157 (193)
T ss_pred hccccchhhhhhHHHHHHhccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEE
Confidence 11111122233445667889999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCchHHHHHHHHhhCCCCCCCc
Q 029752 152 VQGDISYDIVEFITDTWPDVPETA 175 (188)
Q Consensus 152 iQGD~~~~v~~~L~~~~~~ip~~~ 175 (188)
||||+.++|.+||.++|+.||+++
T Consensus 158 IQGDv~dDi~d~I~ekw~ev~ed~ 181 (193)
T KOG3239|consen 158 IQGDVKDDIFDFIPEKWPEVPEDD 181 (193)
T ss_pred EeccchHHHHHHHHHhcccCCccc
Confidence 999999999999999999999996
No 3
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.93 E-value=4.2e-26 Score=165.96 Aligned_cols=82 Identities=40% Similarity=0.657 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCC
Q 029752 91 KKDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPD 170 (188)
Q Consensus 91 k~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ 170 (188)
|+..+.|+|++++|+|||+||+|+||+.|++|+++||+.|+++|||||||.++++++++|+||||++++|.+||.++| +
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~-~ 79 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG-G 79 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC-S
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC-C
Confidence 467899999999999999999999999999999999999999999999999988667899999999999999999998 6
Q ss_pred CCC
Q 029752 171 VPE 173 (188)
Q Consensus 171 ip~ 173 (188)
+|+
T Consensus 80 ~~k 82 (83)
T PF01253_consen 80 IPK 82 (83)
T ss_dssp SE-
T ss_pred CCC
Confidence 664
No 4
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.2e-26 Score=172.75 Aligned_cols=80 Identities=29% Similarity=0.435 Sum_probs=75.5
Q ss_pred CCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC
Q 029752 92 KDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV 171 (188)
Q Consensus 92 ~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i 171 (188)
...+.|+|++++|+++|.||+|+||+.|++||++||+.|+++||||||| ++++|+|||||++.|.+||.++ |+
T Consensus 24 ~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv-----k~~~IeiQGdhr~~v~~~L~~~--G~ 96 (104)
T COG0023 24 EGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-----KDGEIEIQGDHRDKVKELLIKK--GF 96 (104)
T ss_pred ccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee-----cCCEEEEeChHHHHHHHHHHHc--CC
Confidence 4578999999999999999999999999999999999999999999999 5569999999999999999996 99
Q ss_pred CCCcEEE
Q 029752 172 PETAIFF 178 (188)
Q Consensus 172 p~~~I~~ 178 (188)
+.++|.+
T Consensus 97 k~k~i~~ 103 (104)
T COG0023 97 KVKNIGI 103 (104)
T ss_pred chhhccc
Confidence 9999975
No 5
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.91 E-value=3.7e-24 Score=154.52 Aligned_cols=76 Identities=37% Similarity=0.440 Sum_probs=71.8
Q ss_pred cEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCc
Q 029752 96 EVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETA 175 (188)
Q Consensus 96 ~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~ 175 (188)
.|+|++++|++||+||+|+||+.|.+|+++||+.|+++|||||||. +++|+||||+++.|.+||.++ |+++++
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~-----~~~I~lQGD~r~~v~~~L~~~--g~~~~~ 73 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVK-----DEVIELQGDQRKKIKEFLIKM--GFAKDN 73 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEe-----cCEEEEeCcHHHHHHHHHHHc--CCCHHH
Confidence 3899999999999999999999999999999999999999999994 489999999999999999998 999998
Q ss_pred EEE
Q 029752 176 IFF 178 (188)
Q Consensus 176 I~~ 178 (188)
|.+
T Consensus 74 i~i 76 (77)
T cd00474 74 IKI 76 (77)
T ss_pred eEe
Confidence 875
No 6
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.89 E-value=2.5e-23 Score=159.30 Aligned_cols=85 Identities=31% Similarity=0.393 Sum_probs=78.1
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCC
Q 029752 93 DKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVP 172 (188)
Q Consensus 93 ~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip 172 (188)
....|+|++++|+|||+||+|+||+. .+||++|||.|+++|||||||..++.++++|+|||||+++|.+||.++. -++
T Consensus 24 ~~~~I~Iri~qR~grK~VTiI~Gl~~-~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g-~~~ 101 (110)
T TIGR01160 24 TSNYIHIRIQQRNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQG-LLK 101 (110)
T ss_pred ccceEEEEEEEccCCccEEEEeccCC-hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcC-CCC
Confidence 35689999999999999999999995 9999999999999999999999888888999999999999999999983 478
Q ss_pred CCcEEEc
Q 029752 173 ETAIFFI 179 (188)
Q Consensus 173 ~~~I~~~ 179 (188)
+++|.+-
T Consensus 102 ~~~i~vh 108 (110)
T TIGR01160 102 KDQIKIH 108 (110)
T ss_pred HHHeeec
Confidence 9999774
No 7
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.89 E-value=2.4e-23 Score=156.84 Aligned_cols=77 Identities=26% Similarity=0.404 Sum_probs=72.3
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCC
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPE 173 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~ 173 (188)
.+.|+|++++|+|+|+||+|+||+.|++|+++||+.|+++||||||| .+++|+|||||+++|.+||.+. |+|.
T Consensus 23 ~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv-----k~~~I~iQGD~r~~v~~~L~~~--G~~~ 95 (99)
T PRK00939 23 QQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-----KDGRIELQGDHRERVKELLIKM--GFSE 95 (99)
T ss_pred CceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE-----ECCEEEEeCcHHHHHHHHHHHc--CCCh
Confidence 37999999999999999999999999999999999999999999999 4568999999999999999985 9999
Q ss_pred CcEE
Q 029752 174 TAIF 177 (188)
Q Consensus 174 ~~I~ 177 (188)
++|+
T Consensus 96 ~~i~ 99 (99)
T PRK00939 96 ENIE 99 (99)
T ss_pred hhcC
Confidence 9985
No 8
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.85 E-value=3.2e-21 Score=145.76 Aligned_cols=77 Identities=26% Similarity=0.446 Sum_probs=71.9
Q ss_pred CCCcEEEEEEee-cCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC
Q 029752 93 DKKEVVIEKVVR-NKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV 171 (188)
Q Consensus 93 ~~~~I~I~~~~R-~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i 171 (188)
..+.|+|++++| +|+|.||+|+||+.|++||++||+.|+++||||||| .+++|+|||||++.|.+||.+. |+
T Consensus 22 ~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv-----k~~~IeiQGD~~~~v~~~L~~~--G~ 94 (101)
T TIGR01158 22 EDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV-----KDGVIEIQGDHRDRVKDLLEKK--GF 94 (101)
T ss_pred CCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE-----eCCEEEEeCcHHHHHHHHHHHc--CC
Confidence 467999999999 799999999999999999999999999999999999 5679999999999999999986 99
Q ss_pred CCCcE
Q 029752 172 PETAI 176 (188)
Q Consensus 172 p~~~I 176 (188)
|.++|
T Consensus 95 ~~k~~ 99 (101)
T TIGR01158 95 KVKLI 99 (101)
T ss_pred Ceeec
Confidence 88765
No 9
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7e-20 Score=138.31 Aligned_cols=86 Identities=31% Similarity=0.411 Sum_probs=79.9
Q ss_pred CCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC
Q 029752 92 KDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV 171 (188)
Q Consensus 92 ~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i 171 (188)
+....|||++++|+|||++|+|.||.. ..|++.+.+.|++.|||+|+|+++|.-++.|++|||++..|.+||...- .+
T Consensus 25 g~~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g-~~ 102 (112)
T KOG1770|consen 25 GTEKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG-LV 102 (112)
T ss_pred CccceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc-cc
Confidence 344599999999999999999999998 8999999999999999999999999999999999999999999999985 78
Q ss_pred CCCcEEEc
Q 029752 172 PETAIFFI 179 (188)
Q Consensus 172 p~~~I~~~ 179 (188)
.+++|.+-
T Consensus 103 k~~~ikih 110 (112)
T KOG1770|consen 103 KKDNIKIH 110 (112)
T ss_pred cccceeec
Confidence 89998874
No 10
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=9.6e-20 Score=166.23 Aligned_cols=98 Identities=24% Similarity=0.382 Sum_probs=93.1
Q ss_pred CCCCCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCC-CCceEEEcCCchHHHHHHHHhh
Q 029752 89 IKKKDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPT-EKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 89 ~kk~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~-~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
.+|+..++|.|.+++|.|||.||+|+||+.|+||+..+|..|+++|+||.||...|+ ++-+|+|||+|.+.|+++|.+.
T Consensus 461 vkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~ 540 (560)
T KOG2522|consen 461 VKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKS 540 (560)
T ss_pred eecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHh
Confidence 679999999999999999999999999999999999999999999999999988886 4579999999999999999999
Q ss_pred CCCCCCCcEEEcccccCCCC
Q 029752 168 WPDVPETAIFFIEDGKKVPA 187 (188)
Q Consensus 168 ~~~ip~~~I~~~~~~Kkkk~ 187 (188)
| |||.++|+++++.+|||+
T Consensus 541 y-gipkK~I~gleka~Kkkk 559 (560)
T KOG2522|consen 541 Y-GIPKKWIDGLEKAKKKKK 559 (560)
T ss_pred h-CCCHHHHhHHHHhhcccC
Confidence 9 999999999999988875
No 11
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.77 E-value=1.1e-18 Score=135.25 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=66.0
Q ss_pred CCcEEEEEEee-cCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCC
Q 029752 94 KKEVVIEKVVR-NKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVP 172 (188)
Q Consensus 94 ~~~I~I~~~~R-~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip 172 (188)
...|+|++++| +++|.||+|+||+....||++|||.|+++||||||| ++++|+|||||++.|.+||.+. |+.
T Consensus 40 ~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv-----kd~~IeiQGD~r~~v~~~L~~~--G~~ 112 (118)
T PRK06824 40 DGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL-----KDGVIEIQGDHVELLLAELLKR--GFK 112 (118)
T ss_pred CceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE-----ecCEEEEcCcHHHHHHHHHHHC--CCe
Confidence 45899988865 688999999999999999999999999999999999 5689999999999999999987 665
Q ss_pred C
Q 029752 173 E 173 (188)
Q Consensus 173 ~ 173 (188)
.
T Consensus 113 ~ 113 (118)
T PRK06824 113 A 113 (118)
T ss_pred E
Confidence 3
No 12
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.76 E-value=1.5e-18 Score=133.91 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=63.9
Q ss_pred CCCcEEEEEEe-ecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC
Q 029752 93 DKKEVVIEKVV-RNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV 171 (188)
Q Consensus 93 ~~~~I~I~~~~-R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i 171 (188)
..+.|.|++++ ++++|.||+|.||+.+..||++|||.|+++||||||| ++++|+|||||+++|.+||.+. |+
T Consensus 36 ~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv-----kd~~IelQGD~r~~v~~~L~~~--Gf 108 (115)
T PRK07451 36 QQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV-----KDNTIEIQGDHRQKILEILIKL--GY 108 (115)
T ss_pred cceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE-----cCCEEEEcCcHHHHHHHHHHHC--CC
Confidence 45667777543 3356999999999999999999999999999999999 6779999999999999999987 66
Q ss_pred CC
Q 029752 172 PE 173 (188)
Q Consensus 172 p~ 173 (188)
..
T Consensus 109 ~~ 110 (115)
T PRK07451 109 KA 110 (115)
T ss_pred eE
Confidence 53
No 13
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.75 E-value=3.6e-18 Score=130.43 Aligned_cols=73 Identities=23% Similarity=0.338 Sum_probs=63.9
Q ss_pred CCCcEEEEEEee-cCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC
Q 029752 93 DKKEVVIEKVVR-NKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV 171 (188)
Q Consensus 93 ~~~~I~I~~~~R-~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i 171 (188)
....|.|++++. +++|.||+|+||+....||++|||.|+++||||||| .+++|+|||||++.|.+||.+. |+
T Consensus 29 ~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtv-----k~~~IelQGD~r~~v~~~L~~~--Gf 101 (108)
T PRK09019 29 GDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK--GM 101 (108)
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeE-----EcCEEEEcCcHHHHHHHHHHHC--CC
Confidence 456788887653 355899999999988999999999999999999999 5689999999999999999987 66
Q ss_pred C
Q 029752 172 P 172 (188)
Q Consensus 172 p 172 (188)
.
T Consensus 102 ~ 102 (108)
T PRK09019 102 K 102 (108)
T ss_pred e
Confidence 4
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=97.75 E-value=0.00016 Score=53.27 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=50.9
Q ss_pred cEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccce------eEeeCCCCCceEEEcCCchHHHHHHHHhh
Q 029752 96 EVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGA------SVVKGPTEKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 96 ~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~------SV~k~~~~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
+|.... +++|++.+|+|+.++. |+..|.+.|++.+.-.. .|. .-.+.|+|+||+..+|.+||.++
T Consensus 15 PVY~~~-k~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~---~~~g~i~IkG~~~~~Vk~wL~~~ 85 (87)
T PF05046_consen 15 PVYLDI-KNGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVN---ELTGHIEIKGDHVEEVKKWLLEK 85 (87)
T ss_pred cEEEEE-eCCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEe---ecCCEEEEcCccHHHHHHHHHHC
Confidence 444443 3457899999999998 89999999999886433 331 24579999999999999999876
No 15
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=93.67 E-value=0.19 Score=38.58 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=49.3
Q ss_pred CcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 95 KEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 95 ~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
++..+.++.++ -|+|.+|... .-++.-+.+.|..-+|+.|++ .+.+..+|+|.+.....+-++..|
T Consensus 7 p~~~v~~eG~~----kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~i----d~~~rlii~G~~~~~~i~~~l~~y 76 (110)
T smart00653 7 PPPQVLREGKG----KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSI----DGKGRLIVNGRFTPKKLQDLLRRY 76 (110)
T ss_pred CCCeEEEEcCC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeE----CCCCeEEEEEeeCHHHHHHHHHHH
Confidence 44555554443 6888898753 458999999999999999999 344899999998776666555554
No 16
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Probab=93.67 E-value=0.17 Score=41.43 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=46.3
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhc--ccceeEeeC-CCCCceEEEcCCchHHHHHHHHhh
Q 029752 93 DKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKF--ATGASVVKG-PTEKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 93 ~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkf--acg~SV~k~-~~~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
..-+|...+..| |+|.+|+|+.++. |.-.|-+.|...+ .=+.|+... ..-.+.|.+-||+.+.|.+||.++
T Consensus 94 hnlPVYl~~k~~-G~k~lT~IRkVeG---Di~aLe~DL~s~L~~~~~~s~~t~VnelsgqI~~~g~~v~~vr~~L~eK 167 (169)
T KOG4034|consen 94 HNLPVYLDYKQR-GNKILTVIRKVEG---DIWALENDLRSTLEMSPKKSYATHVNELSGQIVLKGNHVDTVREWLQEK 167 (169)
T ss_pred CCcceEEeeecC-CcEEEEEEEeecc---cHHHHHHHHHHHHhhccCCChhhhhhhhcceEEEeCChHHHHHHHHHHc
Confidence 344566665444 8899999999997 4444444444322 223333211 123479999999999999999987
No 17
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=93.40 E-value=0.16 Score=40.54 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=49.7
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
.++..+.++. +| |+|.+|... .-+..-+.+.|..-+|+.|++ .++..+|+|.+.....+-++..|
T Consensus 30 ~p~~~v~~eG---~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-----~~~~lii~G~~~~~~i~~~L~~y 98 (138)
T PRK03988 30 VPKPDVRIEG---NR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-----EGGRLILQGKFSPRVINEKIDRY 98 (138)
T ss_pred CCCCeEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-----cCCEEEEEEeeCHHHHHHHHHHH
Confidence 4555555544 44 899998763 458999999999999999999 34899999998777666655554
No 18
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=93.23 E-value=0.16 Score=40.26 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
.++..+.++ |+| |+|.+|... .-+..-+.|.|..-||+.|++ .++..+|+|.+.....+-++..|
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i-----~~~rlii~G~~~~~~i~~~L~~y 93 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNL-----EGGRLILQGKFTHFLLNERIEDY 93 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCcee-----cCCEEEEEeecCHHHHHHHHHHH
Confidence 455555555 444 999998753 457899999999999999999 34789999998877666555554
No 19
>PRK14434 acylphosphatase; Provisional
Probab=93.04 E-value=0.47 Score=35.08 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=51.2
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcc-cceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCC-CCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFA-TGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVP-ETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfa-cg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip-~~~I~~~ 179 (188)
-.|+|.-. |+-..-+...++++++ -.|.|...+.|.-+|.+||+-.+.|..|+.....+-| ...|+-+
T Consensus 6 i~v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v 75 (92)
T PRK14434 6 MIVSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYV 75 (92)
T ss_pred EEEEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 34677776 7888999999999999 9999977776668999999866666666665554554 5556544
No 20
>PRK14444 acylphosphatase; Provisional
Probab=92.95 E-value=0.58 Score=34.49 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=48.9
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.-. |+-...++..++.+++=+|.|...+.|.-+|++||+- +.|.+|+.....+-|...|+-+
T Consensus 8 i~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~i 74 (92)
T PRK14444 8 VFISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWCYSGPSHARVERV 74 (92)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 45678777 8888999999999999999997776666799999994 3466666554323334455544
No 21
>PRK14451 acylphosphatase; Provisional
Probab=92.64 E-value=0.59 Score=34.30 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=49.6
Q ss_pred EeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 113 VKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 113 V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
|+|.-. |+-...+...++.+++-.|.|...+.|.-+|.+||+- +.|.+|+.....+-|...|+-++
T Consensus 9 V~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 74 (89)
T PRK14451 9 ISGRVQ-GVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTWLQKGPLNARVDVCT 74 (89)
T ss_pred EEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 778776 8889999999999999999998777777899999986 33666665544343445555443
No 22
>PRK14449 acylphosphatase; Provisional
Probab=92.45 E-value=0.65 Score=34.03 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=51.2
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-+|+|.-. |+-...+...++.+++-.|.|...+.+.-+|.+||+- +.|.+|+.....+-|...|+-++
T Consensus 7 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~~~~~a~V~~i~ 74 (90)
T PRK14449 7 LRITGHVQ-GVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINFIKTGLRWARVDNVE 74 (90)
T ss_pred EEEEEeec-CcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 45677665 8888999999999999999998777777899999986 34677766554344555565543
No 23
>PRK14425 acylphosphatase; Provisional
Probab=92.02 E-value=0.59 Score=34.62 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=48.0
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|.-. |+-.......++.+++-.|.|...+.|.-+|++||+-.. |.+|+.....+=|...|+-++
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~-le~f~~~l~~gp~~a~V~~i~ 77 (94)
T PRK14425 10 VRITGRVQ-GVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSA-ISAMIERFRRGPPGASVSGVE 77 (94)
T ss_pred EEEEEeEe-cccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEE
Confidence 34567666 788899999999999999999877777789999997553 444444433233445554443
No 24
>PRK14437 acylphosphatase; Provisional
Probab=91.87 E-value=0.72 Score=35.28 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=49.0
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
.|+|.-. |+-+..+...++.+++-.|.|...+.|.-+|.+||+.. .|.+|+.....+-|...|+-+
T Consensus 28 ~V~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~L~~gP~~a~V~~i 93 (109)
T PRK14437 28 TVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEWLWEGPPQAAVSNV 93 (109)
T ss_pred EEEEecC-CcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHHHHhCCCceEEEEE
Confidence 4677777 88889999999999999999988777778999999865 455555444323344555444
No 25
>PRK14436 acylphosphatase; Provisional
Probab=91.69 E-value=0.9 Score=33.46 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=49.6
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
.|+|.-. |+-...+...++.+++=.|.|...+.+.-+|++||+- +.|.+|+.....+-|...|+-++
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 75 (91)
T PRK14436 9 RIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGWAHQGPPLARVTRVE 75 (91)
T ss_pred EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 4567666 7888999999999999999998777777899999986 34666666544344455555543
No 26
>PRK14445 acylphosphatase; Provisional
Probab=91.09 E-value=0.86 Score=33.42 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=49.5
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-+|+|.-. |+-...+...++.+++-.|.|...+.|.-+|.+||+-.. |.+|+.....+=|...|+-++
T Consensus 8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~gP~~a~V~~i~ 75 (91)
T PRK14445 8 LIVSGLVQ-GVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQAERGPSRSSVTSIM 75 (91)
T ss_pred EEEEEEEc-CcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence 35677766 788899999999999999999877777789999998633 666665544232345565543
No 27
>PRK14422 acylphosphatase; Provisional
Probab=91.09 E-value=1.2 Score=32.89 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=49.9
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|.-. |+-...+...++.+++-.|.|...+.+.-+|.+||+-.. |.+|+.....+-|...|+-++
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gp~~a~V~~i~ 77 (93)
T PRK14422 10 AWVHGHVQ-GVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQLLRGDDTPGRVDKVV 77 (93)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence 35677766 888899999999999999999877777789999998654 666665544353444455443
No 28
>PRK14440 acylphosphatase; Provisional
Probab=91.06 E-value=1.2 Score=32.80 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=48.3
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.-. |+-...+...++.+++-.|.|...+.+.-+|.+||+- +.|.+|+.....+=|...|+-+
T Consensus 7 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~gp~~a~V~~i 73 (90)
T PRK14440 7 ARVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLERIKQGPPAAEVEKV 73 (90)
T ss_pred EEEEEeEe-ccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHHHhhCCCCcEEEEE
Confidence 35666665 7778889999999999999997777677899999986 5666666555434334445443
No 29
>PRK14438 acylphosphatase; Provisional
Probab=90.94 E-value=0.95 Score=33.25 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=49.7
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|.-. |+-...+...++.+++-.|.|...+.+.-+|.+||+- +.|.+|+.....+-|...|+-++
T Consensus 7 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 74 (91)
T PRK14438 7 VTVKGLVQ-GVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDWCHHGPSRARVSGVI 74 (91)
T ss_pred EEEEEecC-CcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEEE
Confidence 45677776 7888999999999999999997777666799999985 44666665544343445555543
No 30
>PRK14446 acylphosphatase; Provisional
Probab=90.89 E-value=0.85 Score=33.53 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=50.0
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-.|+|.=. |+-+.-+...++++++-.|.|...+.+.-+|++||+-. .|.+|+.....+-|...|+-+
T Consensus 6 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~l~~gP~~a~V~~v 72 (88)
T PRK14446 6 FVVSGVVQ-GVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAWLWQGPPAATVAAV 72 (88)
T ss_pred EEEEEecC-CeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEE
Confidence 34677776 88889999999999999999988887778999999853 555555544334455555544
No 31
>PRK14433 acylphosphatase; Provisional
Probab=90.83 E-value=1.1 Score=32.65 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=49.5
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.-. |+-.......++.+++-+|.|...+.+.-+|.+|||-. .|.+|+.....+=|...|.-+
T Consensus 5 i~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gP~~a~V~~i 71 (87)
T PRK14433 5 ALVSGRVQ-GVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWLRRGPRHARVEAV 71 (87)
T ss_pred EEEEEeee-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEE
Confidence 35677655 78889999999999999999977777778999999964 677777665533333445443
No 32
>PRK14428 acylphosphatase; Provisional
Probab=90.78 E-value=1.2 Score=33.36 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=49.8
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-.|+|.-. |+-..-+...++.+++-.|.|...+.|.-+|++||+- +.|.+||.....+=|...|+-+
T Consensus 12 i~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l~~gP~~a~V~~v 78 (97)
T PRK14428 12 IVVTGLVQ-GVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQLAIGPRWSEVSHV 78 (97)
T ss_pred EEEEEecC-CccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHHhhCCCccEEEEE
Confidence 35677776 8888999999999999999997777777899999985 5566666655423344455443
No 33
>PRK14429 acylphosphatase; Provisional
Probab=90.78 E-value=1 Score=33.01 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=48.1
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
.|+|.-. |+-.......++.+++-.|.|...+.|.-+|++||+-.. |.+|+.....+-|...|.-++
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~i~ 73 (90)
T PRK14429 7 KLTGKVQ-GVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIAWCEVGVPCTEVLRVT 73 (90)
T ss_pred EEEEeec-CeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEE
Confidence 4566665 788889999999999999999877767789999998643 555555443353444555443
No 34
>PRK14443 acylphosphatase; Provisional
Probab=90.73 E-value=1 Score=33.52 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=48.4
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCC-CCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVP-ETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip-~~~I~~~ 179 (188)
-.|+|.-. |+-....+..++.+++-.|.|...+.+.-+|.+||+-.. |.+|+.....+-| ...|+-+
T Consensus 8 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~g~p~~a~V~~v 75 (93)
T PRK14443 8 LRVTGFVQ-GVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDAIKKGPSPGCRIEHV 75 (93)
T ss_pred EEEEEeeC-CccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 34667766 788899999999999999999777777789999998433 5555554443543 4444443
No 35
>PRK14420 acylphosphatase; Provisional
Probab=90.73 E-value=1.2 Score=32.55 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=49.7
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|.-. |+-.......++.+++=.|.|...+.+.-+|.+||+- +.|.+|+.....+-|...|.-++
T Consensus 6 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~p~~a~V~~i~ 73 (91)
T PRK14420 6 IIVDGRVQ-GVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKGSPFSKVTDVH 73 (91)
T ss_pred EEEEEeeC-CcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEE
Confidence 34566665 7778889999999999999998777677899999984 66777766554453444555543
No 36
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=90.66 E-value=0.25 Score=38.71 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=48.1
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 93 DKKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 93 ~~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
..+++.|.++.+ .=|+|.+|... .-|+.-+++.|..-+|+.|++ .+.+..+|+|.+...-.+-++..|
T Consensus 18 kmP~~~v~~eG~----~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~i----d~~~~lii~G~~~~~~i~~~L~~f 89 (125)
T PF01873_consen 18 KMPPPQVKIEGK----KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSI----DGKGRLIINGRFSSKQIQDLLDKF 89 (125)
T ss_dssp CCCT--EEEETS----TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEE----ETTTEEEEESSSSCCHHHHHHHHH
T ss_pred ecCCCeEEEEcc----ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEE----CCCCEEEEEEecCHHHHHHHHHHH
Confidence 356666766555 45888888763 348999999999999999999 234899999997655444443333
No 37
>PRK14442 acylphosphatase; Provisional
Probab=90.64 E-value=1.3 Score=32.65 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=48.8
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.-. |+-.......++.+++=.|.|...+.|.-+|++||+.. .|.+|+.....+=|...|+-+
T Consensus 8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v 74 (91)
T PRK14442 8 AYVGGRVQ-GVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERWLGRGPRHAEVSAV 74 (91)
T ss_pred EEEEEecC-CccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhhCCCCeEEEEE
Confidence 35677777 88889999999999999999987777778999999865 366665544323233444443
No 38
>PRK14452 acylphosphatase; Provisional
Probab=90.63 E-value=1.5 Score=33.41 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=49.5
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-.|+|.-. |+-+..+...++.+++-.|.|...+.|.-+|.+||+.. .|.+|+.-...+-|...|+-+
T Consensus 24 i~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~~~l~~gP~~A~V~~v 90 (107)
T PRK14452 24 FLIEGRVQ-GVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELRAWCERGPPGARVKRV 90 (107)
T ss_pred EEEEEeec-CcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhcCCCCcEEEEE
Confidence 46678777 88899999999999999999987777778999999954 566664333323344455443
No 39
>PRK14435 acylphosphatase; Provisional
Probab=90.45 E-value=1.2 Score=32.59 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=48.9
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.-. |+-.......++.+++-.|.|...+.+.-+|++||+- +.|.+|+.....+=|...|+-+
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~l~~gp~~a~V~~v 72 (90)
T PRK14435 6 IRVEGIVQ-GVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNEVAKGPPAAVVTNV 72 (90)
T ss_pred EEEEEEeC-CcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEE
Confidence 35677766 7888999999999999999998877777899999986 3466666554423344444443
No 40
>PRK14427 acylphosphatase; Provisional
Probab=90.01 E-value=1.3 Score=32.79 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=49.2
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+... |.+|+.....+=|...|+-++
T Consensus 10 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~-i~~f~~~l~~~p~~a~V~~i~ 77 (94)
T PRK14427 10 ARVFGVVQ-GVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQ-VEKLLDWLNSDRAPGRVERVD 77 (94)
T ss_pred EEEEEEeC-CcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHhhCCCCcEEEEEE
Confidence 34567666 788899999999999999999777767689999998743 666665554342344455443
No 41
>PRK14423 acylphosphatase; Provisional
Probab=89.83 E-value=1.3 Score=32.57 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=48.6
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
.|+|.-. |+-...+...++.+++-.|.|...+.|.-+|.+||+-. .|.+|+.....+-|...|+-++
T Consensus 10 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v~ 76 (92)
T PRK14423 10 FVSGRVQ-GVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEWCHEGSPAAVVEDVE 76 (92)
T ss_pred EEEEecC-CeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEE
Confidence 4567666 78889999999999999999977766667999999854 4666665544344544555443
No 42
>PRK14447 acylphosphatase; Provisional
Probab=89.75 E-value=1.5 Score=32.44 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=48.1
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCC-CceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~-~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|.-. |+-+.-+.+.++.+++-.|.|...+.| .-+|++||+ .+.|.+|+.....+=|...|+-++
T Consensus 8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~l~~gp~~a~V~~v~ 76 (95)
T PRK14447 8 LFIRGKVQ-GVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEWARVGPPGARVEDVE 76 (95)
T ss_pred EEEEEecC-CccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHHHhhCCCCeEEEEEE
Confidence 35678777 888899999999999999999777666 378999998 455555554332233444455443
No 43
>PRK14426 acylphosphatase; Provisional
Probab=89.44 E-value=1.8 Score=31.79 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=47.7
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCC-CcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPE-TAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~-~~I~~~ 179 (188)
+|+|.-. |+-.......++.+++-.|.|...+.+.-+|.+||+-. .|.+|+.....+.|+ ..|+-+
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~g~P~~a~V~~i 75 (92)
T PRK14426 9 WVYGRVQ-GVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEWLKEGGPRSARVDRV 75 (92)
T ss_pred EEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHHHhcCCCCCeEEEEE
Confidence 4567666 78889999999999999999977777778999999953 355555544435343 345544
No 44
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=89.26 E-value=0.83 Score=38.35 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
.++..+.++. +| |+|.+|... .-+..-+.+.|..-||+.+++ .++..+|+|.+.....+-++..|
T Consensus 26 ~p~~~v~~eG---~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~-----~~~~~ii~G~~~~~~i~~~l~~y 94 (201)
T PRK12336 26 IPEPKIFIEG---KT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKI-----EGGRAVFNGKFTEEDIQAAIDAY 94 (201)
T ss_pred cCCceEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCccee-----cCCEEEEEeeeCHHHHHHHHHHH
Confidence 4455555544 33 999998753 457999999999999999999 34689999998777666655554
No 45
>PRK14421 acylphosphatase; Provisional
Probab=89.20 E-value=1.7 Score=32.69 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=47.6
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-...+...++.+++-.|.|...+.|.-+|++||+-.. |.+|+.....+=|...|+-+
T Consensus 9 ~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gP~~a~V~~v 74 (99)
T PRK14421 9 TIRGRVQ-GVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIARCRRGPSAARVDAV 74 (99)
T ss_pred EEEEeEc-CccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 4677766 788899999999999999999777767689999998643 55555544323334455444
No 46
>PRK14441 acylphosphatase; Provisional
Probab=89.15 E-value=1.9 Score=31.75 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=47.8
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|.=. |+-...+...++.+++=.|.|...+.+.-+|++||+-. .|..|+.....+=|...|.-++
T Consensus 9 i~v~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~ 76 (93)
T PRK14441 9 IVVSGRVQ-GVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVRWCHAGPPAARVDRVE 76 (93)
T ss_pred EEEEEecC-CccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEE
Confidence 34577776 88889999999999999999977776668999999833 4555544332233445555543
No 47
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=88.97 E-value=1.4 Score=31.91 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=47.7
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.-. |+-...+++.++.+++-.|.|...+.+.-+|++||+- +.|.+||.....+-|...|.-+
T Consensus 8 i~v~G~VQ-GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~l~~g~p~a~V~~i 74 (91)
T PF00708_consen 8 IIVSGRVQ-GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKWLKKGPPPARVDEI 74 (91)
T ss_dssp EEEEEETS-SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHHHHHSSTTSEEEEE
T ss_pred EEEEEEEC-cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 35778666 8999999999999999999998777676899999964 3455555444334455666544
No 48
>PRK14432 acylphosphatase; Provisional
Probab=88.33 E-value=2.4 Score=31.36 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=49.2
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEc-CCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQ-GDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQ-GD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-+|+|.-. |+-.......++.+++-.|.|...+.|.-+|++| ||- +.|.+|+.....+=|...|+-++
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~gp~~a~V~~v~ 74 (93)
T PRK14432 6 YFISGKVQ-GVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNGNKYSNIENIE 74 (93)
T ss_pred EEEEEeec-CeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhCCCccEEEEEE
Confidence 35667666 7888899999999999999998777777899998 985 55666665544452344454443
No 49
>PRK14450 acylphosphatase; Provisional
Probab=88.30 E-value=2.8 Score=30.62 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=47.5
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCC-ceEEEcCC--chHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEK-EQIDVQGD--ISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~-~eI~iQGD--~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-+|+|.-. |+-...++..++.+++-.|.|...+.|. -+|.+||+ ..+...++|. . +=|...|+-++
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~--gp~~a~V~~v~ 74 (91)
T PRK14450 6 AIVKGKVQ-GVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-S--GPPRAEVKEVE 74 (91)
T ss_pred EEEEEEec-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-h--CCCCcEEEEEE
Confidence 35667666 7888999999999999999997766664 68999998 5555555553 3 43445555443
No 50
>PRK14439 acylphosphatase; Provisional
Probab=88.00 E-value=2.2 Score=35.08 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=49.6
Q ss_pred EEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCC-CCcEEEcc
Q 029752 110 ITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVP-ETAIFFIE 180 (188)
Q Consensus 110 VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip-~~~I~~~~ 180 (188)
--.|+|.-. |+-...+...++.+++-.|.|...+.|.-+|++||+-.. |.+|+.....+-| ...|+-++
T Consensus 78 ~i~VsGrVQ-GVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~-Ie~Fi~~L~~~gPp~A~Ve~I~ 147 (163)
T PRK14439 78 IAWVYGRVQ-GVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQ-VEKLMQWLKSGGPRSARVERVL 147 (163)
T ss_pred EEEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHhhCCCCCeEEEEEE
Confidence 445678777 888899999999999999999777777789999998643 5555544432223 44455443
No 51
>PRK14448 acylphosphatase; Provisional
Probab=87.97 E-value=2.8 Score=30.67 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=48.2
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.-. |+-.......++.+++-.|.|...+.+.-+|.+||+- +.|.+|+.....+=|...|.-+
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~gp~~a~V~~v 72 (90)
T PRK14448 6 FIVYGHVQ-GVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSD-AQIAAFRDWLQHGPPTAVVCNV 72 (90)
T ss_pred EEEEEeec-CcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCH-HHHHHHHHHHHhCCCceEEEEE
Confidence 45777776 8888999999999999999998777777899999986 3355555444323233444433
No 52
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=85.42 E-value=0.75 Score=32.29 Aligned_cols=29 Identities=34% Similarity=0.714 Sum_probs=21.9
Q ss_pred eeEEEcCCCCCCccccccCCChhhHHHHHHhhCCCC
Q 029752 8 VRVLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDL 43 (188)
Q Consensus 8 ~~V~YC~vC~~P~EyCEf~~~~~kCk~wl~~~~p~l 43 (188)
++|.||..|+ |.+-+..-.+-|...+|+.
T Consensus 1 V~IeyC~~C~-------y~~Ra~~l~q~L~~~Fp~~ 29 (72)
T TIGR02174 1 VEIEYCGSCG-------YKPRAAWLKQELLEEFPDL 29 (72)
T ss_pred CEEEECCCCC-------ChHHHHHHHHHHHHHCCCC
Confidence 5799999999 6666666667777777764
No 53
>PRK14424 acylphosphatase; Provisional
Probab=85.30 E-value=4.8 Score=29.87 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=44.3
Q ss_pred EEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 110 ITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 110 VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
--+|+|.-. |+-.......++.+++-.|.|...+.|.-+|.+||+-.. |.+|+....
T Consensus 10 ~~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~~l~ 66 (94)
T PRK14424 10 YVRVRGVVQ-GVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLAWLR 66 (94)
T ss_pred EEEEEEeec-CCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHHHHH
Confidence 445677766 788899999999999999999877767789999998643 555555443
No 54
>PRK14430 acylphosphatase; Provisional
Probab=84.25 E-value=4.9 Score=29.61 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=45.5
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
-+|+|.=. |+-+.-+...++.+++-.|.|...+.+.-+|.+||+- +.|.+|+.....+=|...|+-+
T Consensus 8 i~v~G~VQ-GVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v 74 (92)
T PRK14430 8 LVAHGRVQ-GVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTV-RQLEALRAWMEAGPPAAQVTKV 74 (92)
T ss_pred EEEEEeec-ceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCceEEEEE
Confidence 34566665 7777889999999999999997777777899999974 4444444333213344455444
No 55
>PRK14431 acylphosphatase; Provisional
Probab=82.00 E-value=6.4 Score=28.82 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=46.3
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC-CCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV-PETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i-p~~~I~~~ 179 (188)
.|+|.=. |+-..-+...++++++-.|.|...+. +-+|.+||+- +.|.+|+.....|- |...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~-~~l~~f~~~l~~g~p~~a~V~~v 72 (89)
T PRK14431 7 QVFGRVQ-GVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDD-ADLERFIQGVIEGASPASNVTSY 72 (89)
T ss_pred EEEEecC-CeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCH-HHHHHHHHHHhcCCCCcEEEEEE
Confidence 4577766 78889999999999999999977655 4899999975 23555554443345 35555544
No 56
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=77.89 E-value=2.2 Score=30.03 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=22.5
Q ss_pred eeEEEcCCCCCCccccccCCChhhHHHHHHhhCCCCc
Q 029752 8 VRVLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLY 44 (188)
Q Consensus 8 ~~V~YC~vC~~P~EyCEf~~~~~kCk~wl~~~~p~l~ 44 (188)
+.|.||..|++-+- +...++-|...+|+.+
T Consensus 3 V~IeYC~~C~~~~~-------a~~l~~~l~~~fp~~~ 32 (76)
T PF10262_consen 3 VTIEYCTSCGYRPR-------ALELAQELLQTFPDRI 32 (76)
T ss_dssp EEEEEETTTTCHHH-------HHHHHHHHHHHSTTTC
T ss_pred EEEEECCCCCCHHH-------HHHHHHHHHHHCCCcc
Confidence 78999999985444 5677777888887633
No 57
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=76.49 E-value=15 Score=27.24 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=51.4
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-.|+|--. |+......+..+..++-.|-|...+.|.-+|++||+--. +..|+.....|-|...|+.++
T Consensus 8 ~~V~GrVQ-GVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~l~~g~~~a~V~~v~ 75 (92)
T COG1254 8 ARVYGRVQ-GVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEWLRKGPPAAKVERVE 75 (92)
T ss_pred EEEEEEec-cccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHHHHhCCCceEEEEEE
Confidence 35666666 888899999999999999999877778889999999777 777765544464554554443
No 58
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=51.84 E-value=59 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=34.9
Q ss_pred EEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHh
Q 029752 110 ITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 166 (188)
Q Consensus 110 VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~ 166 (188)
|++..+ ...+|.+.+...|.=....|..| +|.+.|+-.+++.+-|.+
T Consensus 29 v~i~~~--~~~vdakSil~i~~L~~~~G~~i--------~i~~~G~de~~al~~l~~ 75 (77)
T cd00367 29 ITLRKG--GRKANAKSILGLMSLGAKQGDEI--------TLSAEGEDAEEALEALAE 75 (77)
T ss_pred EEEEEC--CEEEcHHhHHHHHHcCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 444444 34578888888888877777777 888889888888777754
No 59
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=49.53 E-value=37 Score=27.90 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=42.5
Q ss_pred CeeEEEEeccCCCCCcHHHHHHHHhh-hcccceeEeeCCCCCceEEEcCCchH---HHHHHHHhhCCCCCCCcE
Q 029752 107 RKCITTVKGLELFGVKLSDASKKLGK-KFATGASVVKGPTEKEQIDVQGDISY---DIVEFITDTWPDVPETAI 176 (188)
Q Consensus 107 rK~VT~V~GLe~f~idlk~laK~lkk-kfacg~SV~k~~~~~~eI~iQGD~~~---~v~~~L~~~~~~ip~~~I 176 (188)
|..|++..||+. -..+++.|.++- ++-.-++| -+++|-|.|-.+| .++.+|.+.--++|-.+.
T Consensus 91 rq~i~lk~GI~~--e~AKkIvK~IKd~klKVqa~I-----QGd~vRVtgKkrDDLQ~viallk~~d~~~pLQF~ 157 (161)
T PRK05412 91 KQEVKLKQGIDQ--ELAKKIVKLIKDSKLKVQAQI-----QGDQVRVTGKKRDDLQAVIALLRKADLGQPLQFN 157 (161)
T ss_pred EEEEehhhccCH--HHHHHHHHHHHhcCCceeEEe-----cCcEEEEecCCHhHHHHHHHHHHhccCCCCceec
Confidence 467888888886 345677777663 44566777 6789999997777 556666653226775544
No 60
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=48.09 E-value=28 Score=28.28 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=37.9
Q ss_pred ecCCeeEEEEeccCC----CCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHH
Q 029752 104 RNKRKCITTVKGLEL----FGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVE 162 (188)
Q Consensus 104 R~grK~VT~V~GLe~----f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~ 162 (188)
|-|++ |++.++.. -+-|++-+++.|.+-+++.|++ .+...+++||-+.+....
T Consensus 39 ~~g~~--Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~----d~~~rlvl~g~f~~~~i~ 95 (151)
T COG1601 39 REGNR--TIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSI----DGKGRLVLQGKFSDSEIV 95 (151)
T ss_pred cccch--hHHHhHHHHHHHhcCCHHHHHHHHHHHhcccccc----CCcceEEEEecccHHHHH
Confidence 33544 55555432 2458999999999999999999 455889999986655443
No 61
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=44.88 E-value=8.7 Score=23.51 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=5.8
Q ss_pred EcCCCCCCccc
Q 029752 12 YCAVCSLPAEY 22 (188)
Q Consensus 12 YC~vC~~P~Ey 22 (188)
||+.|+-|.++
T Consensus 2 fC~~CG~~l~~ 12 (34)
T PF14803_consen 2 FCPQCGGPLER 12 (34)
T ss_dssp B-TTT--B-EE
T ss_pred ccccccChhhh
Confidence 89999988765
No 62
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=44.81 E-value=50 Score=23.24 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhh
Q 029752 120 GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 120 ~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
.+|.+.+...++=...+|..+ +|.++|+-.+++.+-|.+-
T Consensus 41 ~vdakSil~l~~L~~~~G~~i--------~i~~~G~de~~a~~~i~~~ 80 (84)
T PF00381_consen 41 TVDAKSILGLMSLGAKKGDEI--------EIEAEGEDEEEALEAIAEF 80 (84)
T ss_dssp EEETTSHHHHHHHTBSTTEEE--------EEEEESTTHHHHHHHHHHH
T ss_pred eEecCCHHHHhhhhcCCCCEE--------EEEEECcCHHHHHHHHHHH
Confidence 345555555555555555555 7888999888888777653
No 63
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=42.49 E-value=1e+02 Score=22.44 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=30.8
Q ss_pred CcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 121 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 121 idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
+|.+.+...|.--..+|..| +|.+.|+--++..+-|.+.+
T Consensus 44 ~~akSil~lm~Lg~~~G~~i--------~v~~~G~De~~A~~~l~~~~ 83 (90)
T PRK10897 44 AEANSVIALLMLDSAKGRQI--------EVEATGPQEEEALAAVIALF 83 (90)
T ss_pred EchHhHHHHHHhCCCCCCEE--------EEEEECcCHHHHHHHHHHHH
Confidence 57778888887777777777 88999998877777776543
No 64
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=41.12 E-value=10 Score=27.15 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=15.5
Q ss_pred HHHHHHhhCCCCchHHHh
Q 029752 32 CKPWLIQNTPDLYPDLAE 49 (188)
Q Consensus 32 Ck~wl~~~~p~l~~~~~~ 49 (188)
=++||.+|.|.+.+++.-
T Consensus 47 LkeWLD~nLP~lVErlVr 64 (73)
T PF10691_consen 47 LKEWLDENLPGLVERLVR 64 (73)
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 378999999999988864
No 65
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=39.52 E-value=30 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.643 Sum_probs=24.9
Q ss_pred EcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 152 VQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 152 iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
++|---+.|..||.+.| ++|...|+++-
T Consensus 47 ~~GKAN~~li~~Lak~~-~v~kS~V~ivs 74 (102)
T COG1872 47 VDGKANEELIKFLAKTF-GVPKSSVEIVS 74 (102)
T ss_pred CCcchhHHHHHHHHHHh-CCCcccEEEEe
Confidence 57888899999999999 99999999863
No 66
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=37.42 E-value=44 Score=23.85 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHhhCCCCCCCcEEEccc
Q 029752 154 GDISYDIVEFITDTWPDVPETAIFFIED 181 (188)
Q Consensus 154 GD~~~~v~~~L~~~~~~ip~~~I~~~~~ 181 (188)
|---+.|.+||.+.| +||...|+++--
T Consensus 39 GkAN~ali~~La~~l-~v~ks~i~i~~G 65 (77)
T PF02594_consen 39 GKANKALIRFLAKAL-GVPKSDIEIVSG 65 (77)
T ss_dssp CCHHHHHHHHHHHHC-T--TTCEEECC-
T ss_pred ChhHHHHHHHHHHHh-CCCcccEEEEec
Confidence 677889999999999 999999999743
No 67
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=35.64 E-value=37 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.5
Q ss_pred chHHHHHHHHhhCCCCCCCcEEEc
Q 029752 156 ISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 156 ~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+...|.++|.+++ |||.+.|.+.
T Consensus 77 ~s~~i~~~l~~~L-gIp~dRiYI~ 99 (113)
T PTZ00450 77 MTPRITAAITKEC-GIPAERIYVF 99 (113)
T ss_pred HHHHHHHHHHHHc-CCCcccEEEE
Confidence 5578899999998 9999998873
No 68
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=35.30 E-value=20 Score=33.93 Aligned_cols=33 Identities=30% Similarity=0.920 Sum_probs=24.1
Q ss_pred EcCCCCCCccccc-----------cCC-----ChhhHHHHHHhhCCCCch
Q 029752 12 YCAVCSLPAEYCE-----------FGP-----DLEKCKPWLIQNTPDLYP 45 (188)
Q Consensus 12 YC~vC~~P~EyCE-----------f~~-----~~~kCk~wl~~~~p~l~~ 45 (188)
-|.||+||..+|| |.+ +.+-| .|.-++.|+-|.
T Consensus 382 ~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~~C-~~~F~~ePerY~ 430 (465)
T cd01057 382 LCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGC-EWIFEQEPERYA 430 (465)
T ss_pred CCCCCCCeeccccCcccccceEEEECCEEEEecCHHH-HHHHHHCHHHHh
Confidence 7999999999873 222 23467 677778888884
No 69
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=34.99 E-value=1.2e+02 Score=21.90 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhh
Q 029752 120 GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 120 ~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
.+|.+.+...|.=...+|..| +|.+.|+-.++..+.|.+.
T Consensus 41 ~vdakSil~lm~Lg~~~G~~v--------~i~a~G~De~~Al~~l~~~ 80 (88)
T PRK13780 41 SVNLKSIMGVMSLGVGQGADI--------TISAEGADAADAIAAIEET 80 (88)
T ss_pred EEechhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHH
Confidence 356777777777777777777 8899998888766666554
No 70
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=30.69 E-value=9.4 Score=23.77 Aligned_cols=17 Identities=35% Similarity=1.189 Sum_probs=6.0
Q ss_pred CCccccccCCChhhHHHHHHhhC
Q 029752 18 LPAEYCEFGPDLEKCKPWLIQNT 40 (188)
Q Consensus 18 ~P~EyCEf~~~~~kCk~wl~~~~ 40 (188)
||--||+| |+-||..+.
T Consensus 1 m~ryyCdy------C~~~~~~d~ 17 (38)
T PF06220_consen 1 MPRYYCDY------CKKYLTHDS 17 (38)
T ss_dssp --S-B-TT------T--B-S--S
T ss_pred CcCeeccc------ccceecCCC
Confidence 67789998 777885443
No 71
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=28.49 E-value=27 Score=24.23 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=11.1
Q ss_pred CceeEEEcCCCCCC
Q 029752 6 QPVRVLYCAVCSLP 19 (188)
Q Consensus 6 ~p~~V~YC~vC~~P 19 (188)
+-++--||..|+||
T Consensus 27 yhv~k~~CaaCGfg 40 (61)
T COG2126 27 YHVRKKYCAACGFG 40 (61)
T ss_pred eeeccceecccCCC
Confidence 34566799999998
No 72
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=28.26 E-value=2e+02 Score=20.27 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=27.8
Q ss_pred CcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhh
Q 029752 121 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 121 idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
+|.+.+...|.=...+|..| +|.+.|+-.+++.+.|.+.
T Consensus 42 ~dakSil~ll~Lg~~~G~~i--------~i~~~G~de~~a~~~l~~~ 80 (82)
T TIGR01003 42 VNAKSIMGIMMLGAGQGTEV--------TVSADGEDEAEALEALAKL 80 (82)
T ss_pred EehHhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHH
Confidence 45666666666666666666 7888898888888777653
No 73
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.09 E-value=28 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=21.1
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCC
Q 029752 108 KCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGP 144 (188)
Q Consensus 108 K~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~ 144 (188)
+.|.++ ||-. |--+|=+++|.|+.-.+++...
T Consensus 183 ~~vgI~-GlGG----LGh~aVq~AKAMG~rV~vis~~ 214 (360)
T KOG0023|consen 183 KWVGIV-GLGG----LGHMAVQYAKAMGMRVTVISTS 214 (360)
T ss_pred cEEEEe-cCcc----cchHHHHHHHHhCcEEEEEeCC
Confidence 555443 5553 5667777888888877777654
No 74
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=27.66 E-value=27 Score=25.28 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=10.4
Q ss_pred EcCCCCCCccccc
Q 029752 12 YCAVCSLPAEYCE 24 (188)
Q Consensus 12 YC~vC~~P~EyCE 24 (188)
||..|+||..-=+
T Consensus 2 ~CQSCGMPl~~~~ 14 (81)
T PF12674_consen 2 FCQSCGMPLSKDE 14 (81)
T ss_pred cCCcCcCccCCcc
Confidence 7999999976444
No 75
>PRK05090 hypothetical protein; Validated
Probab=27.64 E-value=51 Score=24.62 Aligned_cols=27 Identities=11% Similarity=0.441 Sum_probs=23.4
Q ss_pred cCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 153 QGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 153 QGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
.|---+.|.+||.+.| +||..+|+++-
T Consensus 44 eGkAN~ali~~LAk~l-~v~ks~I~i~~ 70 (95)
T PRK05090 44 DGQANAHLLKFLAKQF-RVAKSQVVIEK 70 (95)
T ss_pred CChHHHHHHHHHHHHh-CCChhhEEEEe
Confidence 4777889999999999 99999999864
No 76
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.48 E-value=1e+02 Score=29.41 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=47.0
Q ss_pred CCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeC-------C---------C------------CCceEEEcCCch
Q 029752 106 KRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKG-------P---------T------------EKEQIDVQGDIS 157 (188)
Q Consensus 106 grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~-------~---------~------------~~~eI~iQGD~~ 157 (188)
.+..|-+|-|++.|.-|+.+|...|. .|+.-..+..+ + + -.-.|.+|....
T Consensus 219 ~~~~VNii~g~~~~~gd~~eikrlL~-~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~~ 297 (515)
T TIGR01286 219 SNGKINIIPGFETYIGNFREIKRILS-LMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYTL 297 (515)
T ss_pred CCCeEEEECCCCCCchhHHHHHHHHH-HcCCCeEEccCccccccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhhh
Confidence 45779999999888778888877776 55654443211 0 1 123688988788
Q ss_pred HHHHHHHHhhCCCCCC
Q 029752 158 YDIVEFITDTWPDVPE 173 (188)
Q Consensus 158 ~~v~~~L~~~~~~ip~ 173 (188)
....++|.++| |+|.
T Consensus 298 ~~~a~~l~~~~-g~p~ 312 (515)
T TIGR01286 298 RKTKEYIEKTW-KQET 312 (515)
T ss_pred HHHHHHHHHHh-CCCc
Confidence 88999999999 8874
No 77
>PRK01310 hypothetical protein; Validated
Probab=27.45 E-value=50 Score=25.04 Aligned_cols=28 Identities=14% Similarity=0.471 Sum_probs=23.8
Q ss_pred EcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 152 VQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 152 iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
+.|---+.|..||...| +||+.+|+++-
T Consensus 49 v~GkAN~ali~~LA~~l-~v~ks~I~iv~ 76 (104)
T PRK01310 49 EGGEANRALIELLAKAL-GVPKSSVRLLS 76 (104)
T ss_pred CCChHHHHHHHHHHHHh-CCChhhEEEEe
Confidence 34777889999999998 99999999964
No 78
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=26.97 E-value=94 Score=25.55 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=34.6
Q ss_pred CeeEEEEeccCCCCCcHHHHHHHHhh-hcccceeEeeCCCCCceEEEcCCchHHHHH---HHHhhCCCCCCCcE
Q 029752 107 RKCITTVKGLELFGVKLSDASKKLGK-KFATGASVVKGPTEKEQIDVQGDISYDIVE---FITDTWPDVPETAI 176 (188)
Q Consensus 107 rK~VT~V~GLe~f~idlk~laK~lkk-kfacg~SV~k~~~~~~eI~iQGD~~~~v~~---~L~~~~~~ip~~~I 176 (188)
|..||+..|++. -..+++.|.++. ++=.-+++ -+++|-|.|-.+|++-+ +|.+.-.++|-.+.
T Consensus 91 rq~i~lk~GI~~--d~AKkIvK~IKd~klKVqa~I-----Qgd~vRVtgKkrDDLQ~viallk~~d~~~pLQF~ 157 (160)
T PF04461_consen 91 RQVIKLKQGIDQ--DTAKKIVKLIKDSKLKVQAQI-----QGDQVRVTGKKRDDLQEVIALLKEQDLGIPLQFN 157 (160)
T ss_dssp EEEEEE--S--H--HHHHHHHHHHHHH--SEEEEE-----ETTEEEEEES-HHHHHHHHHHHHHS--SS--EEE
T ss_pred EEEEEeecccCH--HHHHHHHHHHHhcCCceeEEe-----cCcEEEEecCCHHHHHHHHHHHHcccCCCCceec
Confidence 467888898886 345666666652 44566777 57899999988887655 45443226665544
No 79
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=26.48 E-value=27 Score=20.48 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=7.7
Q ss_pred EEcCCCCCCccccc
Q 029752 11 LYCAVCSLPAEYCE 24 (188)
Q Consensus 11 ~YC~vC~~P~EyCE 24 (188)
.||+.|+=|...=+
T Consensus 4 rfC~~CG~~t~~~~ 17 (32)
T PF09297_consen 4 RFCGRCGAPTKPAP 17 (32)
T ss_dssp SB-TTT--BEEE-S
T ss_pred cccCcCCccccCCC
Confidence 48999998887643
No 80
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=26.21 E-value=53 Score=22.98 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.8
Q ss_pred hHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 157 SYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 157 ~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
..+|+..|.+.||++++..|.+.+
T Consensus 5 ~~eIA~~L~e~~pd~dp~~vrFtd 28 (63)
T TIGR03412 5 SQEIAIALAEAHPDVDPKTVRFTD 28 (63)
T ss_pred HHHHHHHHHHHCCCCCcceeeHHH
Confidence 568899999999999999998765
No 81
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=26.11 E-value=63 Score=24.05 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=18.2
Q ss_pred chHHHHHHHHhhCCCCCCCcEEEc
Q 029752 156 ISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 156 ~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
....|.++|.+.+ |||+++|.+.
T Consensus 77 l~~~i~~~l~~~l-gi~~~rv~I~ 99 (116)
T PTZ00397 77 IAAAITKILASHL-KVKSERVYIE 99 (116)
T ss_pred HHHHHHHHHHHHh-CcCcccEEEE
Confidence 3456888888887 9999998874
No 82
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=26.00 E-value=49 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=20.5
Q ss_pred ChhhHHHHHHhhCCCCchHHHhhhh
Q 029752 28 DLEKCKPWLIQNTPDLYPDLAEELN 52 (188)
Q Consensus 28 ~~~kCk~wl~~~~p~l~~~~~~~~~ 52 (188)
.+++=..|-.+||||+++.|-..+.
T Consensus 10 awrrId~W~aeh~pdl~~~l~pgat 34 (191)
T COG4282 10 AWRRIDTWVAEHHPDLLPFLRPGAT 34 (191)
T ss_pred HHHHHHHHHHhcCcccccccCCCcc
Confidence 4667789999999999999876543
No 83
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=25.69 E-value=30 Score=31.05 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.0
Q ss_pred eEEEcCCCCCCcc
Q 029752 9 RVLYCAVCSLPAE 21 (188)
Q Consensus 9 ~V~YC~vC~~P~E 21 (188)
++.|||||+=+|=
T Consensus 184 ~~~~CPvCGS~Pv 196 (308)
T COG3058 184 SRQYCPVCGSMPV 196 (308)
T ss_pred ccccCCCcCCCCc
Confidence 6679999986653
No 84
>PF11376 DUF3179: Protein of unknown function (DUF3179); InterPro: IPR021516 This family of proteins has no known function.
Probab=25.50 E-value=36 Score=29.91 Aligned_cols=17 Identities=35% Similarity=0.944 Sum_probs=13.8
Q ss_pred CceeEEEcCCCCCCccc
Q 029752 6 QPVRVLYCAVCSLPAEY 22 (188)
Q Consensus 6 ~p~~V~YC~vC~~P~Ey 22 (188)
.|+-|.||+.|+--.-|
T Consensus 58 ~pv~vTyCplc~s~~~f 74 (266)
T PF11376_consen 58 EPVAVTYCPLCGSGMAF 74 (266)
T ss_pred EEEEEEECccCCCceEE
Confidence 58999999999865544
No 85
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=25.12 E-value=31 Score=21.96 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=8.5
Q ss_pred EEcCCCCCCc
Q 029752 11 LYCAVCSLPA 20 (188)
Q Consensus 11 ~YC~vC~~P~ 20 (188)
.+|+.|+.|.
T Consensus 18 ~~Cp~C~~PL 27 (41)
T PF06677_consen 18 EHCPDCGTPL 27 (41)
T ss_pred CccCCCCCee
Confidence 4899999885
No 86
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=24.40 E-value=2.5e+02 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhh
Q 029752 121 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 121 idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
+|.+.+...|+=...+|..| +|.+.|+-.+++.+-|.+-
T Consensus 42 vdaKSil~llsLg~~~g~~v--------~v~~~G~de~~a~~~l~~~ 80 (82)
T PRK13782 42 VNAKSIMGLMSLAIGTGSMI--------TIITEGSDEEEALEALAAY 80 (82)
T ss_pred EecHhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHH
Confidence 56677777777777777777 7888899888877777553
No 87
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=24.30 E-value=2.7e+02 Score=19.95 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=31.0
Q ss_pred CcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 121 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 121 idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
+|.+.+...+.=...+|..| +|.+.|+--++..+-|.+.+
T Consensus 42 ~~akSil~lm~Lg~~~G~~v--------~i~~~G~De~~A~~~l~~ll 81 (85)
T PRK10850 42 ASAKSLFKLQTLGLTQGTVV--------TISAEGEDEQKAVEHLVKLM 81 (85)
T ss_pred EchHhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHHH
Confidence 57778888888777777777 88899998888777776543
No 88
>PRK10721 hypothetical protein; Provisional
Probab=24.23 E-value=68 Score=22.67 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=20.8
Q ss_pred hHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 157 SYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 157 ~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
..+|+..|.++||++++..|.+.+
T Consensus 8 ~~dIA~~L~e~~Pd~DP~~vrFtD 31 (66)
T PRK10721 8 SREIGEALYDAYPDLDPKTVRFTD 31 (66)
T ss_pred HHHHHHHHHHHCCCCCCCEeehHH
Confidence 567888999999999999998865
No 89
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=24.07 E-value=38 Score=24.80 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=10.8
Q ss_pred CceeEEEcCCCCCC
Q 029752 6 QPVRVLYCAVCSLP 19 (188)
Q Consensus 6 ~p~~V~YC~vC~~P 19 (188)
+.-+|+||+-|.|-
T Consensus 18 ~~~qVV~C~~C~FV 31 (81)
T PF10891_consen 18 EENQVVYCPKCYFV 31 (81)
T ss_pred ccCCEEEcccccee
Confidence 34579999999863
No 90
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=23.63 E-value=39 Score=21.47 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.3
Q ss_pred CCChhhHHHHHHhhCCCC
Q 029752 26 GPDLEKCKPWLIQNTPDL 43 (188)
Q Consensus 26 ~~~~~kCk~wl~~~~p~l 43 (188)
.+++..|-+|+..+.|.+
T Consensus 14 ~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 14 KGDWDEALEWLSSLKPPL 31 (58)
T ss_pred cCCHHHHHHHHHHcCHHH
Confidence 578999999999998854
No 91
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.59 E-value=27 Score=25.56 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=7.6
Q ss_pred EcCCCCCCccc
Q 029752 12 YCAVCSLPAEY 22 (188)
Q Consensus 12 YC~vC~~P~Ey 22 (188)
-||+|.||.+-
T Consensus 22 ~CGiCRm~Fdg 32 (84)
T KOG1493|consen 22 TCGICRMPFDG 32 (84)
T ss_pred ccceEecccCC
Confidence 57777777654
No 92
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=22.79 E-value=29 Score=30.22 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=9.4
Q ss_pred EEcCCCCCCccccccCCC
Q 029752 11 LYCAVCSLPAEYCEFGPD 28 (188)
Q Consensus 11 ~YC~vC~~P~EyCEf~~~ 28 (188)
-|||||+-+|-.-...+.
T Consensus 173 g~CPvCGs~P~~s~l~~~ 190 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGG 190 (290)
T ss_dssp SS-TTT---EEEEEEE--
T ss_pred CcCCCCCCcCceEEEecC
Confidence 599999999877666443
No 93
>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=22.74 E-value=42 Score=22.72 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=10.9
Q ss_pred CCceeEEEcCCCCC
Q 029752 5 PQPVRVLYCAVCSL 18 (188)
Q Consensus 5 ~~p~~V~YC~vC~~ 18 (188)
.+|+.|.+|..|++
T Consensus 35 ~~pL~l~~C~~Cgl 48 (62)
T PF08421_consen 35 RYPLDLYVCEDCGL 48 (62)
T ss_dssp EEEEEEEEETTT--
T ss_pred EECCEEEECCCCCc
Confidence 47999999999997
No 94
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=22.72 E-value=51 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.5
Q ss_pred chHHHHHHHHhhCCCCCCCcEEEc
Q 029752 156 ISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 156 ~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+...|.++|.+++ |||.+.|.+.
T Consensus 75 ~s~~i~~~l~~~L-gIp~~Riyi~ 97 (114)
T PF01187_consen 75 YSAAITEFLEEEL-GIPPDRIYIN 97 (114)
T ss_dssp HHHHHHHHHHHHH-T--GGGEEEE
T ss_pred HHHHHHHHHHHHh-CCCcCceEEE
Confidence 5667899999998 9999998874
No 95
>PRK00647 hypothetical protein; Validated
Probab=22.45 E-value=71 Score=24.02 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=23.4
Q ss_pred cCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 153 QGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 153 QGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-|---..|.+||.+.| +||+..|+++-
T Consensus 39 dGKAN~ali~~LAk~l-~vpks~I~Iv~ 65 (96)
T PRK00647 39 KGKANDAVIALLAKFL-SLPKRDVTLIA 65 (96)
T ss_pred CChHHHHHHHHHHHHh-CCChhhEEEEe
Confidence 3677789999999999 99999999874
No 96
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=22.23 E-value=41 Score=23.59 Aligned_cols=11 Identities=55% Similarity=1.150 Sum_probs=8.9
Q ss_pred CCceeEEEcCC
Q 029752 5 PQPVRVLYCAV 15 (188)
Q Consensus 5 ~~p~~V~YC~v 15 (188)
|-|-.|+||+.
T Consensus 52 plpsnvlycpe 62 (71)
T PF15451_consen 52 PLPSNVLYCPE 62 (71)
T ss_pred CCCccceechh
Confidence 56889999974
No 97
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.77 E-value=2e+02 Score=18.51 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHH
Q 029752 128 KKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 163 (188)
Q Consensus 128 K~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~ 163 (188)
+.|...++|.-.+.........|.|.|. .+.|...
T Consensus 23 ~~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A 57 (62)
T cd02394 23 RKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKA 57 (62)
T ss_pred HHHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHH
Confidence 3444555555554333334688999999 4555543
No 98
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.74 E-value=37 Score=20.47 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=7.2
Q ss_pred EcCCCCCCccc
Q 029752 12 YCAVCSLPAEY 22 (188)
Q Consensus 12 YC~vC~~P~Ey 22 (188)
-|++|+-|.++
T Consensus 20 ~CP~Cg~~~~~ 30 (34)
T cd00729 20 KCPICGAPKEK 30 (34)
T ss_pred cCcCCCCchHH
Confidence 57777766654
No 99
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=21.68 E-value=1.3e+02 Score=22.56 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=18.0
Q ss_pred CCCcEEEEEEeecCCeeEEEE
Q 029752 93 DKKEVVIEKVVRNKRKCITTV 113 (188)
Q Consensus 93 ~~~~I~I~~~~R~grK~VT~V 113 (188)
....+.+....|=++|+||+|
T Consensus 75 k~~v~al~~T~Ryk~KyVT~v 95 (100)
T PF04739_consen 75 KDGVLALGTTHRYKSKYVTTV 95 (100)
T ss_dssp BTTEEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEEEecceEEEEE
Confidence 355788899999999999998
No 100
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.31 E-value=2.3e+02 Score=23.71 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=40.5
Q ss_pred cHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcccc
Q 029752 122 KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDG 182 (188)
Q Consensus 122 dlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~~~ 182 (188)
++..+...|...|+-...++.+...--+|.=.|=..-.-..+|.+.| ||+.+.+..++|.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~-gi~~~~v~afGD~ 213 (272)
T PRK15126 154 DLTRLQIQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHL-GLSLADCMAFGDA 213 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHh-CCCHHHeEEecCC
Confidence 56778888888776555554432222466666766666777778888 9998888776653
No 101
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=20.61 E-value=62 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeE
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASV 140 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV 140 (188)
.++||+.-.+|...|.|-|++ -|++..
T Consensus 3 s~tgle~s~fd~~ql~k~f~~--tc~~~~ 29 (105)
T PF11388_consen 3 SNTGLEKSNFDPAQLTKPFGK--TCQGDY 29 (105)
T ss_pred cccccccccCCHHHhhhhhhc--cccCch
Confidence 367999999999999999998 455444
No 102
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.40 E-value=2.2e+02 Score=25.57 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=42.7
Q ss_pred CeeEEEEeccCCCCCcHHHHHHHHhhh-------cccceeEeeCCC---CCceEEEcCCchHHHHHHHHhhCCCCCC
Q 029752 107 RKCITTVKGLELFGVKLSDASKKLGKK-------FATGASVVKGPT---EKEQIDVQGDISYDIVEFITDTWPDVPE 173 (188)
Q Consensus 107 rK~VT~V~GLe~f~idlk~laK~lkkk-------facg~SV~k~~~---~~~eI~iQGD~~~~v~~~L~~~~~~ip~ 173 (188)
++.|-+|-++.. .-|+.+|...|... |..++|+..... -.-.|.+.++....+.++|.++| |+|-
T Consensus 160 ~~~VNiig~~~~-~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~-GiP~ 234 (406)
T cd01967 160 PYDVNIIGEYNI-GGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLVHCSRSMNYLAREMEERY-GIPY 234 (406)
T ss_pred CCeEEEEecccc-chhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEEEChHHHHHHHHHHHHhh-CCCE
Confidence 467888876543 44888887777652 222333322111 12367788888999999999998 9985
No 103
>PRK01530 hypothetical protein; Reviewed
Probab=20.24 E-value=78 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.637 Sum_probs=22.9
Q ss_pred cCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 153 QGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 153 QGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
-|---+.|.+||...| +||+..|.++-
T Consensus 51 dGkAN~ali~~LAk~l-~v~ks~I~Ivs 77 (105)
T PRK01530 51 QGKANEEIINYLAKEW-KLSRSNIEIIK 77 (105)
T ss_pred CChHHHHHHHHHHHHh-CCChhhEEEEe
Confidence 4677788999999998 99999999864
No 104
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=20.24 E-value=2.1e+02 Score=22.47 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=46.1
Q ss_pred eEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcccc
Q 029752 109 CITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDG 182 (188)
Q Consensus 109 ~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~~~ 182 (188)
.+..|. +..-.-++..+...|.+.|.--..+......--+|+-+|--.-....+|.+.+ +++.+.+..+++.
T Consensus 140 ~i~ki~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lei~~~~vsK~~ai~~l~~~~-~i~~~~~~~~GD~ 211 (254)
T PF08282_consen 140 EIFKIL-FFPDPEDLEQLREELKKKFPNLIDVVRSSPYFLEITPKGVSKGSAIKYLLEYL-GISPEDIIAFGDS 211 (254)
T ss_dssp SESEEE-EESCHHHHHHHHHHHHHHHTTTEEEEEEETTEEEEEETTSSHHHHHHHHHHHH-TTSGGGEEEEESS
T ss_pred cceeee-ccccchhhhhhhhhhccccCcceeEEEecccceEEeeCCCCHHHHHHHHhhhc-ccccceeEEeecc
Confidence 344444 33334578888899999987543443332233566666666666666666777 9998888877664
Done!