Query 029752
Match_columns 188
No_of_seqs 206 out of 832
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_F EIF1; ribosome, transla 99.9 2.3E-26 7.7E-31 172.7 11.4 84 94-180 16-100 (101)
2 2ogh_A Eukaryotic translation 99.9 1E-25 3.5E-30 170.9 11.1 88 91-180 20-107 (108)
3 2if1_A EIF1, SUI1; translation 99.9 1.2E-24 4.2E-29 169.1 6.7 86 92-180 39-125 (126)
4 1d1r_A Hypothetical 11.4 KD pr 99.9 6.9E-23 2.4E-27 157.2 5.6 80 93-180 29-110 (116)
5 1gxu_A Hydrogenase maturation 92.4 0.72 2.5E-05 32.8 7.9 63 112-179 12-74 (91)
6 2fhm_A Probable acylphosphatas 92.1 0.52 1.8E-05 33.4 6.9 67 112-180 7-73 (91)
7 2d74_B Translation initiation 91.1 0.19 6.6E-06 39.4 3.9 65 94-168 32-100 (148)
8 3trg_A Acylphosphatase; fatty 90.7 1.2 3.9E-05 32.2 7.6 66 112-179 17-82 (98)
9 1nee_A EIF-2-beta, probable tr 90.6 0.11 3.6E-06 40.4 1.9 65 94-168 30-98 (138)
10 2lxf_A Uncharacterized protein 90.4 0.57 2E-05 35.4 5.9 66 113-180 40-105 (121)
11 1urr_A CG18505 protein; acylph 90.0 1.3 4.4E-05 32.0 7.3 65 112-179 16-82 (102)
12 2vh7_A Acylphosphatase-1; hydr 89.4 1.4 4.9E-05 31.6 7.2 65 112-179 13-79 (99)
13 1ulr_A Putative acylphosphatas 89.2 2.3 7.7E-05 29.9 7.9 64 112-179 7-72 (88)
14 2bjd_A Acylphosphatase; hypert 88.9 1.7 5.8E-05 31.5 7.3 66 112-179 19-84 (101)
15 1w2i_A Acylphosphatase; hydrol 88.5 1.9 6.5E-05 30.5 7.2 66 112-179 9-74 (91)
16 2e9h_A EIF-5, eukaryotic trans 87.7 0.32 1.1E-05 38.6 2.8 71 94-168 25-99 (157)
17 1k8b_A EIF-2-beta, probable tr 87.1 0.46 1.6E-05 30.9 2.9 46 103-155 3-52 (52)
18 2g2k_A EIF-5, eukaryotic trans 84.4 0.33 1.1E-05 38.9 1.4 71 93-168 17-92 (170)
19 2gv1_A Probable acylphosphatas 83.4 2 6.8E-05 30.4 5.1 66 112-179 9-75 (92)
20 1aps_A Acylphosphatase; hydrol 80.9 1.9 6.4E-05 30.9 4.2 54 112-167 12-65 (98)
21 2fa8_A Hypothetical protein AT 78.4 0.9 3.1E-05 33.6 1.8 20 1-20 3-22 (105)
22 3cw2_K Translation initiation 74.4 0.069 2.4E-06 41.5 -5.5 60 103-168 36-99 (139)
23 3dex_A SAV_2001; alpha-beta pr 71.8 1.6 5.4E-05 32.5 1.6 15 8-22 15-29 (107)
24 2oka_A Hypothetical protein; P 68.2 2.2 7.7E-05 31.4 1.8 17 6-22 6-22 (104)
25 2npb_A Selenoprotein W; struct 64.3 2 7E-05 31.0 0.9 13 6-18 3-15 (96)
26 2ojl_A Hypothetical protein; B 61.6 3.1 0.00011 30.9 1.5 16 7-22 10-25 (108)
27 2p0g_A Selenoprotein W-related 60.7 3.3 0.00011 30.5 1.5 16 7-22 5-20 (105)
28 2ljk_A Protein C17ORF37; MIEN1 57.8 4.1 0.00014 30.5 1.6 15 7-21 26-40 (117)
29 3vth_A Hydrogenase maturation 49.0 31 0.0011 33.2 6.5 64 112-179 15-80 (761)
30 3lqh_A Histone-lysine N-methyl 39.2 2.7 9.3E-05 33.7 -2.2 35 11-45 3-40 (183)
31 4hhu_A OR280; engineered prote 36.8 71 0.0024 24.4 5.6 70 94-166 31-103 (170)
32 1we9_A PHD finger family prote 36.5 2 6.9E-05 28.0 -2.8 30 9-38 5-34 (64)
33 1wee_A PHD finger family prote 36.3 2.5 8.6E-05 28.4 -2.4 30 7-37 13-42 (72)
34 3hyi_A Protein DUF199/WHIA; la 35.8 1.1E+02 0.0037 26.1 7.2 54 122-177 107-163 (295)
35 1in0_A YAJQ protein, HI1034; a 34.3 56 0.0019 25.8 4.8 64 107-178 93-161 (163)
36 1wew_A DNA-binding family prot 33.3 3.8 0.00013 28.0 -2.0 28 5-36 11-42 (78)
37 2y3m_A Emhofq, protein transpo 29.0 1.6E+02 0.0054 22.0 6.6 65 108-177 104-174 (175)
38 4g9i_A Hydrogenase maturation 29.0 69 0.0024 30.8 5.4 57 111-168 6-64 (772)
39 3o70_A PHD finger protein 13; 28.7 3.3 0.00011 27.8 -2.8 30 6-37 15-44 (68)
40 1s3a_A NADH-ubiquinone oxidore 28.1 12 0.0004 26.8 -0.2 26 18-43 22-47 (102)
41 1n91_A ORF, hypothetical prote 27.7 47 0.0016 24.3 3.1 27 153-180 48-74 (108)
42 3pgv_A Haloacid dehalogenase-l 27.5 1.5E+02 0.005 23.4 6.4 60 122-182 175-234 (285)
43 2dsm_A Hypothetical protein YQ 26.3 43 0.0015 23.0 2.5 36 135-174 24-61 (72)
44 2b30_A Pvivax hypothetical pro 25.7 2.1E+02 0.0073 23.0 7.3 61 121-182 189-249 (301)
45 3gxs_A Phenylacetate-coenzyme 23.3 33 0.0011 23.9 1.5 71 108-180 4-88 (109)
46 1wep_A PHF8; structural genomi 22.6 5.9 0.0002 27.0 -2.5 29 8-37 10-38 (79)
47 1in0_A YAJQ protein, HI1034; a 22.5 1.3E+02 0.0044 23.7 4.9 55 123-178 19-81 (163)
48 1kkl_H Phosphocarrier protein 21.5 97 0.0033 22.0 3.8 18 149-166 74-91 (100)
49 1pch_A Phosphocarrier protein; 21.0 1E+02 0.0036 21.2 3.8 38 121-166 41-78 (88)
No 1
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=99.94 E-value=2.3e-26 Score=172.75 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=79.6
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC-C
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV-P 172 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i-p 172 (188)
.+.|+|++++|+|||+||+|+||+ |++||++|||.|+++|||||||++++.++++|+|||||++.|.+||.++ |+ |
T Consensus 16 ~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~--G~~~ 92 (101)
T 2xzm_F 16 QTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE--GIAA 92 (101)
T ss_dssp SCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH--SSSC
T ss_pred CCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc--CCCC
Confidence 678999999999999999999999 9999999999999999999999998888889999999999999999998 66 9
Q ss_pred CCcEEEcc
Q 029752 173 ETAIFFIE 180 (188)
Q Consensus 173 ~~~I~~~~ 180 (188)
+++|++.+
T Consensus 93 ~~~I~vhg 100 (101)
T 2xzm_F 93 VDNITIHG 100 (101)
T ss_dssp TTTEEECC
T ss_pred HHHEEEcC
Confidence 99999864
No 2
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-25 Score=170.94 Aligned_cols=88 Identities=30% Similarity=0.376 Sum_probs=82.1
Q ss_pred CCCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCC
Q 029752 91 KKDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPD 170 (188)
Q Consensus 91 k~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ 170 (188)
++..+.|+|++++|+|||+||+|+||+. ++||++|||.|+++|||||||+++++++++|+|||||++.|.+||.++. .
T Consensus 20 ~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g-~ 97 (108)
T 2ogh_A 20 TATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQL-G 97 (108)
T ss_dssp CCCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHH-T
T ss_pred cCCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcC-C
Confidence 4678899999999999999999999997 9999999999999999999999988888899999999999999999995 5
Q ss_pred CCCCcEEEcc
Q 029752 171 VPETAIFFIE 180 (188)
Q Consensus 171 ip~~~I~~~~ 180 (188)
+|+++|++.+
T Consensus 98 ~~~~~I~vhg 107 (108)
T 2ogh_A 98 LQKKNIKIHG 107 (108)
T ss_dssp SCCSCEEECC
T ss_pred CCHHHEEEcC
Confidence 7999999865
No 3
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=99.90 E-value=1.2e-24 Score=169.05 Aligned_cols=86 Identities=27% Similarity=0.378 Sum_probs=80.3
Q ss_pred CCCCcEEEEEEeecCCeeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCC
Q 029752 92 KDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDV 171 (188)
Q Consensus 92 ~~~~~I~I~~~~R~grK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~i 171 (188)
+..+.|+|++++|+|||+||+|+||+. ++||++|||.|+++|||||||++++.++++|+||||+++.|.+||.++ |+
T Consensus 39 g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~--G~ 115 (126)
T 2if1_A 39 GTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI--GL 115 (126)
T ss_dssp SCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH--TS
T ss_pred CCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc--CC
Confidence 668899999999999999999999998 999999999999999999999988877889999999999999999998 66
Q ss_pred -CCCcEEEcc
Q 029752 172 -PETAIFFIE 180 (188)
Q Consensus 172 -p~~~I~~~~ 180 (188)
++++|++-+
T Consensus 116 ~~~~~I~vhg 125 (126)
T 2if1_A 116 AKDDQLKVHG 125 (126)
T ss_dssp SCTTTEECCC
T ss_pred CChhhEEeeC
Confidence 799998753
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.87 E-value=6.9e-23 Score=157.16 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCCcEEEEEEeecCC--eeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCC
Q 029752 93 DKKEVVIEKVVRNKR--KCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPD 170 (188)
Q Consensus 93 ~~~~I~I~~~~R~gr--K~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ 170 (188)
..+.|+|+++ |+|| |.||+|+||+.|++||++|||.|+++||||||| .+++|+||||+++.|.+||.++ |
T Consensus 29 ~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtV-----k~~~IeiQGD~r~~i~~~L~~~--G 100 (116)
T 1d1r_A 29 GDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK--G 100 (116)
T ss_dssp CCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC-----CSSCEEECSCCHHHHHHHHHHH--T
T ss_pred CCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEE-----cCCEEEEeCcHHHHHHHHHHHc--C
Confidence 3678999998 7777 999999999999999999999999999999999 4589999999999999999998 7
Q ss_pred CCCCcEEEcc
Q 029752 171 VPETAIFFIE 180 (188)
Q Consensus 171 ip~~~I~~~~ 180 (188)
++.++|..++
T Consensus 101 ~~vk~i~~~~ 110 (116)
T 1d1r_A 101 MKVKLAGGLE 110 (116)
T ss_dssp CEECCCCCCC
T ss_pred CCcceecccc
Confidence 8888877664
No 5
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=92.43 E-value=0.72 Score=32.83 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=50.2
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-...+...++.+++-.|.|...+.+ -+|++||+- +.+.++|... +=|...|+-+
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~--~P~~A~V~~v 74 (91)
T 1gxu_A 12 RIRGKVQ-GVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQH--CPPLARIDSV 74 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHT--CCTTCEEEEE
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhC--CCCCEEEEEE
Confidence 4788776 899999999999999999999777666 899999999 8888888765 2244555443
No 6
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=92.10 E-value=0.52 Score=33.40 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=49.7
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
+|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+-. .|.+||.....+-|...|+-++
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~~~p~a~V~~v~ 73 (91)
T 2fhm_A 7 IVDGRVQ-GVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVEAVKNGSPFSKVTDIS 73 (91)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHHHHHTTCSSSEEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhCCCccEEEEEE
Confidence 4788776 89999999999999999999987777778999999853 3444444333344556666553
No 7
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=91.14 E-value=0.19 Score=39.43 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=47.9
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
.+++.+.++ |+| |+|.+|... .=++.-+.|.|..-+|+.|++. ++..+|+|.+.....+-++..|
T Consensus 32 mP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~~~L~~y 100 (148)
T 2d74_B 32 VPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-----GRRVVLQGRFTPYLIANKLKKY 100 (148)
T ss_dssp CCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-----TTEEEESSCCCHHHHHHHHHHH
T ss_pred cCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHHHHHHHH
Confidence 445555544 444 999998753 3478899999999999999992 6799999998766655554443
No 8
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=90.69 E-value=1.2 Score=32.21 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=49.2
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+ .+.|..|+.....+=|...|+-+
T Consensus 17 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~-~~~l~~f~~~l~~gPp~A~V~~v 82 (98)
T 3trg_A 17 TVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGE-RDSIMILTEWLWEGPPQAAVSNV 82 (98)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHTTTCSTTCEEEEE
T ss_pred EEEEeEC-CCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEEC-HHHHHHHHHHHHhCCCCcEEEEE
Confidence 5778776 899999999999999999999777666689999998 45566666554433344455443
No 9
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=90.59 E-value=0.11 Score=40.44 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=47.3
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
.+++.+.++ |+| |+|.+|... .=++.-+.|.|..-+|+.|++ . ++..+|+|.+.....+-++..|
T Consensus 30 mp~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~i----d-~~rlii~G~~~~~~i~~~L~~y 98 (138)
T 1nee_A 30 VPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNL----E-GGRAILQGKFTHFLINERIEDY 98 (138)
T ss_dssp CSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCC----B-TTTEEEESSCSSSHHHHHHHHH
T ss_pred cCCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceee----c-CCEEEEEeeeCHHHHHHHHHHH
Confidence 344444443 556 999998863 347899999999999999999 2 6789999997665555444433
No 10
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=90.44 E-value=0.57 Score=35.41 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=47.7
Q ss_pred EeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 113 VKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 113 V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
|+|.-. |+-...+...++.+++-.|.|...+.|.-+|++||+- +.|.+||.....+=|...|+-++
T Consensus 40 V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~-~~v~~f~~~l~~gPp~A~V~~v~ 105 (121)
T 2lxf_A 40 VTGKVQ-GVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPK-EQVDAFVKYLHKGSPKSVVKKVS 105 (121)
T ss_dssp EEECTT-CCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEH-HHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EEEeeC-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEE
Confidence 778776 8888999999999999999998777777899999973 44444443322244555565543
No 11
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=89.96 E-value=1.3 Score=32.05 Aligned_cols=65 Identities=8% Similarity=0.172 Sum_probs=48.6
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCc--hHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~--~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+- .+...++|... +=|...|+-+
T Consensus 16 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~--gP~~a~V~~v 82 (102)
T 1urr_A 16 EIFGRVQ-GVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENN--RIPNAKVSKA 82 (102)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHC--CSTTCEEEEE
T ss_pred EEEEeEC-CcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhc--CCCccEEEEE
Confidence 4888776 8999999999999999999998777676899999985 34455555433 3344555544
No 12
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=89.44 E-value=1.4 Score=31.58 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=48.3
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCc--hHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~--~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+- .+.+.++|... +=|...|+-+
T Consensus 13 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~--~p~~a~V~~v 79 (99)
T 2vh7_A 13 EIFGKVQ-GVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETR--GSPKSHIDKA 79 (99)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHT--CSTTCEEEEE
T ss_pred EEEEeeC-CcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhc--CCCceEEEEE
Confidence 4788776 8999999999999999999998777666899999985 34455555433 3344555544
No 13
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=89.19 E-value=2.3 Score=29.86 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=48.6
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCc--hHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~--~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
.|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+- .+...++|. . +=|...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~--gP~~a~V~~v 72 (88)
T 1ulr_A 7 LVKGRVQ-GVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-Q--GPRLARVEAV 72 (88)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-H--CSTTCEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-h--CCCCcEEEEE
Confidence 5788766 8999999999999999999998777676899999985 455555555 3 3344555544
No 14
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=88.92 E-value=1.7 Score=31.47 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=48.8
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-...++..++.+++-.|.|...+.|.-+|++||+.. .|.+||.....+=|...|+-+
T Consensus 19 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~gP~~A~V~~v 84 (101)
T 2bjd_A 19 RVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEE-ALSKLLERIKQGPPAAEVEKV 84 (101)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHH-HHHHHHHHHTTCSTTCEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhCCCccEEEEE
Confidence 4888776 89999999999999999999987776768999999853 355555544435233555443
No 15
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=88.46 E-value=1.9 Score=30.49 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=48.4
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
.|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+-.. |.+|+.....+=|...|+-+
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~l~~gP~~a~V~~v 74 (91)
T 1w2i_A 9 KIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEER-VEALIGWAHQGPPLARVTRV 74 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHH-HHHHHHHTTTCSTTCEEEEE
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 4788776 899999999999999999999877777789999998532 55555443323344555544
No 16
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.72 E-value=0.32 Score=38.55 Aligned_cols=71 Identities=8% Similarity=0.080 Sum_probs=50.8
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
.+++.+.++.++.. .-|+|.+|... .=++.-+.|.|...+|+.|++.. +++..+|+|.+.....+-++..|
T Consensus 25 mP~~~v~~eG~gnG-~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~---~~~rlii~G~~~~~~i~~~L~~y 99 (157)
T 2e9h_A 25 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV---KNDRYIVNGSHEANKLQDMLDGF 99 (157)
T ss_dssp EECCCEEECSSSSS-CEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEET---TTTEEEEEBCCCHHHHHHHHHHH
T ss_pred cCCCeEEEeccCCc-cEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC---CCCEEEEEeeeCHHHHHHHHHHH
Confidence 45566677776332 45788888753 44788999999999999999931 46899999998766555444433
No 17
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=87.14 E-value=0.46 Score=30.89 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=37.0
Q ss_pred eecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCC
Q 029752 103 VRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGD 155 (188)
Q Consensus 103 ~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD 155 (188)
.|-|+| |+|.++... .=++.-+.|.|.+.+++.|++. ++..+|+|.
T Consensus 3 ~~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~ 52 (52)
T 1k8b_A 3 LIEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-----GGRLILQRR 52 (52)
T ss_dssp EEETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-----TTEEEEECC
T ss_pred EEEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-----CCEEEEeCC
Confidence 355777 999998763 3478999999999999999992 578888883
No 18
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=84.39 E-value=0.33 Score=38.92 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=50.2
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCC-CceEEEcCCchHHHHHHHHhh
Q 029752 93 DKKEVVIEKVVRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 93 ~~~~I~I~~~~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~-~~eI~iQGD~~~~v~~~L~~~ 167 (188)
..+++.+.++.++.+ .-|+|.+|... .=++.-+.+.|..-+|+.|++ .+ ++..+|+|.+....++-++..
T Consensus 17 kmP~~~v~~EG~gnG-~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~i----d~~~~rliinG~~~~~~i~~~L~~ 91 (170)
T 2g2k_A 17 KMPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQF----DVKNDRYIVNGSHEANKLQDMLDG 91 (170)
T ss_dssp CCCCCCCEEESCTTT-CEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEE----CTTTCCEEEEBCCCHHHHHHHHHH
T ss_pred cCCCCeEEEeccCCc-cEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceee----cCCCCEEEEEeeeCHHHHHHHHHH
Confidence 356777888888432 34677776643 235667788899999999999 33 678999999877666555544
Q ss_pred C
Q 029752 168 W 168 (188)
Q Consensus 168 ~ 168 (188)
|
T Consensus 92 y 92 (170)
T 2g2k_A 92 F 92 (170)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=83.45 E-value=2 Score=30.39 Aligned_cols=66 Identities=9% Similarity=0.011 Sum_probs=44.9
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhh-CCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT-WPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~-~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-...+...++.+++-.|.|...+.+.-+|++||+-. .|.+|+... ..+=|...|+-+
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~~gP~~a~V~~v 75 (92)
T 2gv1_A 9 WVYGRVQ-GVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEG-QVEKLMQWLKSGGPRSARVERV 75 (92)
T ss_dssp EEEEECT-TTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHH-HHHHHHHHHHHTSSTTSEEEEE
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHhhccCCCceEEEEE
Confidence 4777665 77778888888899999999977776668999999853 244444332 225234445443
No 20
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=80.86 E-value=1.9 Score=30.90 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=41.7
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhh
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 167 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~ 167 (188)
+|+|.-. |+-...++..++.+++-.|.|...+.+.-+|++||+-. .|.+||...
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~l~~f~~~l 65 (98)
T 1aps_A 12 EVFGRVQ-GVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEE-KVNSMKSWL 65 (98)
T ss_dssp EEECTTS-CCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHH-HHHHHHHSS
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHH
Confidence 4788766 88888899999999999999876665557999999853 366665443
No 21
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=78.38 E-value=0.9 Score=33.56 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=13.0
Q ss_pred CCCCCCceeEEEcCCCCCCc
Q 029752 1 MAEKPQPVRVLYCAVCSLPA 20 (188)
Q Consensus 1 m~~~~~p~~V~YC~vC~~P~ 20 (188)
|+.....+.|.||.-|+|=+
T Consensus 3 m~~~~~~V~I~YC~~C~~~~ 22 (105)
T 2fa8_A 3 MTETKPRIAIRYCTQCNWLL 22 (105)
T ss_dssp ---CCCEEEEEEETTTTCHH
T ss_pred cCCCCCEEEEEECCCCCCHH
Confidence 55533459999999999644
No 22
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=74.43 E-value=0.069 Score=41.53 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=45.9
Q ss_pred eecCCeeEEEEeccCCC----CCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhC
Q 029752 103 VRNKRKCITTVKGLELF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 168 (188)
Q Consensus 103 ~R~grK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~ 168 (188)
.|-|+| |+|.+|... .=++.-+.|.|..-+|+.|++ .+++..+|+|.+...-.+-++..|
T Consensus 36 ~~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~i----d~~~rlii~G~~~~~~i~~~L~~y 99 (139)
T 3cw2_K 36 LNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNV----DDKGELVIQGKFSSQVINTLMERF 99 (139)
T ss_dssp CCCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCC----SSSCCCTTTCSCCSCCSCSTTTTT
T ss_pred EEECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEE----CCCCeEEEEeeeCHHHHHHHHHHH
Confidence 344656 999999875 337889999999999999999 346789999998766555444444
No 23
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=71.76 E-value=1.6 Score=32.45 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=12.6
Q ss_pred eeEEEcCCCCCCccc
Q 029752 8 VRVLYCAVCSLPAEY 22 (188)
Q Consensus 8 ~~V~YC~vC~~P~Ey 22 (188)
+.|.||.-|+|=+-|
T Consensus 15 V~I~YC~~C~w~lRa 29 (107)
T 3dex_A 15 VQIEYCTQCRWLPRA 29 (107)
T ss_dssp EEEEEETTTTCHHHH
T ss_pred EEEEECCCCCChHHH
Confidence 889999999986655
No 24
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=68.21 E-value=2.2 Score=31.38 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=13.5
Q ss_pred CceeEEEcCCCCCCccc
Q 029752 6 QPVRVLYCAVCSLPAEY 22 (188)
Q Consensus 6 ~p~~V~YC~vC~~P~Ey 22 (188)
.-+.|.||..|+|=+-|
T Consensus 6 p~V~I~YC~~C~~~~Ra 22 (104)
T 2oka_A 6 PEIVITYCTQCQWLLRA 22 (104)
T ss_dssp CEEEEEEETTTTCHHHH
T ss_pred CEEEEEECCCCCChHHH
Confidence 44999999999985554
No 25
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=64.28 E-value=2 Score=31.02 Aligned_cols=13 Identities=38% Similarity=0.830 Sum_probs=10.8
Q ss_pred CceeEEEcCCCCC
Q 029752 6 QPVRVLYCAVCSL 18 (188)
Q Consensus 6 ~p~~V~YC~vC~~ 18 (188)
..+.|.||..|+|
T Consensus 3 ~~V~I~YC~~C~y 15 (96)
T 2npb_A 3 LAVRVVYSGACGY 15 (96)
T ss_dssp EEEEEECCCCSCH
T ss_pred CEEEEEEcCCCCC
Confidence 3489999999993
No 26
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=61.59 E-value=3.1 Score=30.89 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=12.8
Q ss_pred ceeEEEcCCCCCCccc
Q 029752 7 PVRVLYCAVCSLPAEY 22 (188)
Q Consensus 7 p~~V~YC~vC~~P~Ey 22 (188)
-+.|.||+-|+|=+-|
T Consensus 10 ~V~I~YC~~C~w~lRa 25 (108)
T 2ojl_A 10 RIAIQYCTQCQWLLRA 25 (108)
T ss_dssp EEEEEEETTTTCHHHH
T ss_pred EEEEEECCCCCChHHH
Confidence 3899999999985544
No 27
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=60.73 E-value=3.3 Score=30.53 Aligned_cols=16 Identities=19% Similarity=0.629 Sum_probs=13.0
Q ss_pred ceeEEEcCCCCCCccc
Q 029752 7 PVRVLYCAVCSLPAEY 22 (188)
Q Consensus 7 p~~V~YC~vC~~P~Ey 22 (188)
.+.|.||.-|+|=+-|
T Consensus 5 ~V~I~YC~~C~w~~Ra 20 (105)
T 2p0g_A 5 QIEIYYCRQCNWMLRS 20 (105)
T ss_dssp EEEEEEETTTTCHHHH
T ss_pred EEEEEECCCCCChHHH
Confidence 4899999999985554
No 28
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=57.76 E-value=4.1 Score=30.54 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=11.6
Q ss_pred ceeEEEcCCCCCCcc
Q 029752 7 PVRVLYCAVCSLPAE 21 (188)
Q Consensus 7 p~~V~YC~vC~~P~E 21 (188)
.+.|.||+-|+|=+-
T Consensus 26 rV~IeYC~~C~~~~r 40 (117)
T 2ljk_A 26 RIVVEYCEPCGFEAT 40 (117)
T ss_dssp CCEEEECTTTTCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 489999999985443
No 29
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=49.02 E-value=31 Score=33.20 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=47.0
Q ss_pred EEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCc--hHHHHHHHHhhCCCCCCCcEEEc
Q 029752 112 TVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPDVPETAIFFI 179 (188)
Q Consensus 112 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~--~~~v~~~L~~~~~~ip~~~I~~~ 179 (188)
+|+|.-. |+-..-+...++.+++-.|.|...+.| -+|++||+- .+...++|... +=|...|+-+
T Consensus 15 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~--~Pp~a~V~~v 80 (761)
T 3vth_A 15 NIFGIVQ-GVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKEN--PPSLSVIDEI 80 (761)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHS--CCTTCEEEEE
T ss_pred EEEEEeC-CcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcC--CCCCeEEEee
Confidence 5888776 999999999999999999999776655 899999984 34444455433 3344455443
No 30
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=39.16 E-value=2.7 Score=33.67 Aligned_cols=35 Identities=17% Similarity=0.469 Sum_probs=24.7
Q ss_pred EEcCCCCCCcccccc---CCChhhHHHHHHhhCCCCch
Q 029752 11 LYCAVCSLPAEYCEF---GPDLEKCKPWLIQNTPDLYP 45 (188)
Q Consensus 11 ~YC~vC~~P~EyCEf---~~~~~kCk~wl~~~~p~l~~ 45 (188)
.|||+|..|+.--+| .-.-+.|..|....+=.+-+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~ 40 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSD 40 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCH
Confidence 489999999877666 33346899997665554443
No 31
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=36.82 E-value=71 Score=24.37 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=48.4
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC-CCcHHHHHHHHhhhcccceeEeeCC--CCCceEEEcCCchHHHHHHHHh
Q 029752 94 KKEVVIEKVVRNKRKCITTVKGLELF-GVKLSDASKKLGKKFATGASVVKGP--TEKEQIDVQGDISYDIVEFITD 166 (188)
Q Consensus 94 ~~~I~I~~~~R~grK~VT~V~GLe~f-~idlk~laK~lkkkfacg~SV~k~~--~~~~eI~iQGD~~~~v~~~L~~ 166 (188)
...|+... .|+.-+.+|+|.+.- .-+|.+-|..|++.|.-..+.+--. ++-..|.+.||-.+.+...|.+
T Consensus 31 agtvtytl---~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalke 103 (170)
T 4hhu_A 31 AGTVTYTL---SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKE 103 (170)
T ss_dssp TCEEEEEE---ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHH
T ss_pred cceEEEEE---eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHH
Confidence 34555443 478999999999862 3356666677888998776665422 2337899999988877766654
No 32
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.49 E-value=2 Score=28.03 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=19.1
Q ss_pred eEEEcCCCCCCccccccCCChhhHHHHHHh
Q 029752 9 RVLYCAVCSLPAEYCEFGPDLEKCKPWLIQ 38 (188)
Q Consensus 9 ~V~YC~vC~~P~EyCEf~~~~~kCk~wl~~ 38 (188)
...||++|..|..-=++.-.-+.|..|...
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~ 34 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHG 34 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEET
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCc
Confidence 346999999997421333334478889643
No 33
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.26 E-value=2.5 Score=28.40 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred ceeEEEcCCCCCCccccccCCChhhHHHHHH
Q 029752 7 PVRVLYCAVCSLPAEYCEFGPDLEKCKPWLI 37 (188)
Q Consensus 7 p~~V~YC~vC~~P~EyCEf~~~~~kCk~wl~ 37 (188)
....+|| +|+.|.++=++.-.-+.|..|..
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H 42 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHH 42 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEE
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccC
Confidence 4568999 79999765444444457989953
No 34
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=35.83 E-value=1.1e+02 Score=26.10 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=38.1
Q ss_pred cHHHHHHHHhhhcccceeEeeCCCCC--ceEEEcCC-chHHHHHHHHhhCCCCCCCcEE
Q 029752 122 KLSDASKKLGKKFATGASVVKGPTEK--EQIDVQGD-ISYDIVEFITDTWPDVPETAIF 177 (188)
Q Consensus 122 dlk~laK~lkkkfacg~SV~k~~~~~--~eI~iQGD-~~~~v~~~L~~~~~~ip~~~I~ 177 (188)
+.......|+-.|=+||||+... +. -||...+. +.+.|.++|...| +++.+.++
T Consensus 107 ~~~~~~A~lRGaFLa~GSv~dP~-~~YHLEi~~~~~e~a~~l~~ll~~~~-~l~ak~~~ 163 (295)
T 3hyi_A 107 DVALFVSFLRGLFLSGGSMTNPR-YHYHLEINLFEEETLALTRKSLKDFF-NINAGIIE 163 (295)
T ss_dssp SHHHHHHHHHHHHHHHEEECCTT-TCCCEEEEESCHHHHHHHHHHHHHHH-CCCCEEEE
T ss_pred ChHHHHHHHHHHHhcCeecCCCC-CceeEEEeeCcHHHHHHHHHHHHHhc-CCCceEEE
Confidence 44566678999999999996533 33 57776665 6677777774556 88866554
No 35
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=34.29 E-value=56 Score=25.79 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=41.4
Q ss_pred CeeEEEEeccCCCCCcHHHHHHHHhh-hcccceeEeeCCCCCceEEEcCCchHHH---HHHHHh-hCCCCCCCcEEE
Q 029752 107 RKCITTVKGLELFGVKLSDASKKLGK-KFATGASVVKGPTEKEQIDVQGDISYDI---VEFITD-TWPDVPETAIFF 178 (188)
Q Consensus 107 rK~VT~V~GLe~f~idlk~laK~lkk-kfacg~SV~k~~~~~~eI~iQGD~~~~v---~~~L~~-~~~~ip~~~I~~ 178 (188)
|..||+..|++. -..+++.|.++- ++-.-++| -+++|-|.|-.+|++ +.+|.+ .| ++|-.+..+
T Consensus 93 rq~~~lk~GI~~--e~AKkIvK~IKdsklKVqa~I-----QGd~vRVtgKkrDDLQ~viallk~~d~-~~plQF~Nf 161 (163)
T 1in0_A 93 SKEIKLKQGIET--EMAKKITKLVKDSKIKVQTQI-----QGEQVRVTGKSRDDLQAVIQLVKSAEL-GQPFQFNNF 161 (163)
T ss_dssp EEEEEECCSCCH--HHHHHHHHHHHHHTCSEEEEE-----ETTEEEEEESCHHHHHHHHHHHHHSCC-SSCCEEEEE
T ss_pred EEEEEeecccCH--HHHHHHHHHHHhcCCcceeEe-----cCcEEEEecCCHHHHHHHHHHHHhcCC-CCCeeeccC
Confidence 366788888886 345666666653 34466677 467888888887776 556653 34 677655543
No 36
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.25 E-value=3.8 Score=28.02 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=19.5
Q ss_pred CCceeEEEcCCCCCCccccccCCC--hh--hHHHHH
Q 029752 5 PQPVRVLYCAVCSLPAEYCEFGPD--LE--KCKPWL 36 (188)
Q Consensus 5 ~~p~~V~YC~vC~~P~EyCEf~~~--~~--kCk~wl 36 (188)
..+-..+|| +|+.|.+ +|.+ -+ .|..|.
T Consensus 11 ~~~~~~~~C-iC~~~~~---~g~MI~CD~~~C~~W~ 42 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLE---TDSMIQCEDPRCHVWQ 42 (78)
T ss_dssp SSCCCCCCC-SSCCCCC---CSCEEECSSTTTCCEE
T ss_pred cCCCCCEEe-ECCCcCC---CCCEEEECCccCCccc
Confidence 356678999 8999954 3433 23 788885
No 37
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=29.01 E-value=1.6e+02 Score=22.05 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=42.3
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHh----hhcccceeEeeCCCCCceEEEcCC--chHHHHHHHHhhCCCCCCCcEE
Q 029752 108 KCITTVKGLELFGVKLSDASKKLG----KKFATGASVVKGPTEKEQIDVQGD--ISYDIVEFITDTWPDVPETAIF 177 (188)
Q Consensus 108 K~VT~V~GLe~f~idlk~laK~lk----kkfacg~SV~k~~~~~~eI~iQGD--~~~~v~~~L~~~~~~ip~~~I~ 177 (188)
..+|.+--|. ..+..+++..|+ ..++-+++|+-++ ....|+|.|. ....|.++|... .+|...|.
T Consensus 104 ~~~~~v~~L~--y~~a~~~~~~l~~~~~~l~~~~g~v~~d~-~tN~liv~~~~~~i~~i~~li~~l--D~p~~QV~ 174 (175)
T 2y3m_A 104 QLNTATIKLH--FAKASEVMKSLTGGSGSLLSPNGSITFDD-RSNLLLIQDEPRSVRNIKKLIKEL--DKPIEQLE 174 (175)
T ss_dssp CCEEEEEECS--SSCHHHHHHHHHCSSSCSSCTTCEEEEET-TTTEEEEEECHHHHHHHHHHHHHH--CC------
T ss_pred CcEEEEEEEe--CCCHHHHHHHHhhCcccccCCCceEEEEC-CCCEEEEEcCHHHHHHHHHHHHHh--CCChhhCc
Confidence 3455554344 478999999999 7777777886654 4468999987 447788887666 77877664
No 38
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=28.98 E-value=69 Score=30.80 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=42.7
Q ss_pred EEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCc--hHHHHHHHHhhC
Q 029752 111 TTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTW 168 (188)
Q Consensus 111 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~--~~~v~~~L~~~~ 168 (188)
-.|+|+-. |+-+.-+.-.|+++++=.|.|..+.+.+-+|+|||+. .+...+-|..+.
T Consensus 6 i~v~G~VQ-GVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~~~~~~F~~~l~~~~ 64 (772)
T 4g9i_A 6 IHVQGIVQ-AVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGREEDIEAFIEDLYKKK 64 (772)
T ss_dssp EEECSSTT-TSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCSTTHHHHHHHHHHSS
T ss_pred EEEEEEEe-CCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECHHHHHHHHHHHhhCC
Confidence 35788888 8999999999999999999995433346799999974 444444454443
No 39
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=28.67 E-value=3.3 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=20.6
Q ss_pred CceeEEEcCCCCCCccccccCCChhhHHHHHH
Q 029752 6 QPVRVLYCAVCSLPAEYCEFGPDLEKCKPWLI 37 (188)
Q Consensus 6 ~p~~V~YC~vC~~P~EyCEf~~~~~kCk~wl~ 37 (188)
.+-..+|| +|+.|.. =+|.-.-+.|..|..
T Consensus 15 ~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH 44 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA-GRPMIECNECHTWIH 44 (68)
T ss_dssp TTTTCCCS-TTCCCCT-TCCEEECTTTCCEEE
T ss_pred CCCCceEe-ECCCcCC-CCCEEECCCCCcccc
Confidence 45678899 9999875 334334457988853
No 40
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=28.05 E-value=12 Score=26.80 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCccccccCCChhhHHHHHHhhCCCC
Q 029752 18 LPAEYCEFGPDLEKCKPWLIQNTPDL 43 (188)
Q Consensus 18 ~P~EyCEf~~~~~kCk~wl~~~~p~l 43 (188)
+-.-||.++++...-+++|..+.|++
T Consensus 22 l~~~yc~~~~sS~G~R~Fl~~~l~~~ 47 (102)
T 1s3a_A 22 IRIHLCQRSPGSQGVRDFIEKRYVEL 47 (102)
T ss_dssp EEEECCSSSCCCHHHHHHHHHTHHHH
T ss_pred EEEEEcCCCCCchhHHHHHHHhhHHH
Confidence 44568889999999999998776543
No 41
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=27.66 E-value=47 Score=24.29 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=23.5
Q ss_pred cCCchHHHHHHHHhhCCCCCCCcEEEcc
Q 029752 153 QGDISYDIVEFITDTWPDVPETAIFFIE 180 (188)
Q Consensus 153 QGD~~~~v~~~L~~~~~~ip~~~I~~~~ 180 (188)
.|---..|.+||.+.| +||+..|.++-
T Consensus 48 dGkAN~ali~~LAk~l-~V~ks~V~Iv~ 74 (108)
T 1n91_A 48 DGQANSHLVKFLGKQF-RVAKSQVVIEK 74 (108)
T ss_dssp HHHHHHHHHHHHHHHT-CCCTTTEEESS
T ss_pred CChHHHHHHHHHHHHh-CCccceEEEEe
Confidence 4667789999999999 99999999973
No 42
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=27.51 E-value=1.5e+02 Score=23.41 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=40.3
Q ss_pred cHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcccc
Q 029752 122 KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDG 182 (188)
Q Consensus 122 dlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~~~ 182 (188)
.+..+...|...|+....++......-+|.-.|--.-.....|.+.+ ||+.+.+..++|.
T Consensus 175 ~~~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~al~~l~~~l-gi~~~~~ia~GD~ 234 (285)
T 3pgv_A 175 HLLPLEQAMNARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKML-GYTLSDCIAFGDG 234 (285)
T ss_dssp HHHHHHHHHHHHHGGGEEEEESSTTEEEEEETTCSHHHHHHHHHHHT-TCCGGGEEEEECS
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCceEEEecCCCChHHHHHHHHHHh-CCCHHHEEEECCc
Confidence 46677788888887655554432233456666655666677777888 9998888777664
No 43
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=26.32 E-value=43 Score=23.00 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=27.1
Q ss_pred ccceeEeeCCCCCceEEEcCC--chHHHHHHHHhhCCCCCCC
Q 029752 135 ATGASVVKGPTEKEQIDVQGD--ISYDIVEFITDTWPDVPET 174 (188)
Q Consensus 135 acg~SV~k~~~~~~eI~iQGD--~~~~v~~~L~~~~~~ip~~ 174 (188)
+||+=|.. +++.|+.-|| +.+.|.+||.+.+ |+..+
T Consensus 24 ~cG~EI~~---gd~yl~f~GeiIl~eNl~~Yl~e~~-g~~~k 61 (72)
T 2dsm_A 24 FYGDEVTP---VDDYVIDGGEIILRENLERYLREQL-GFEFK 61 (72)
T ss_dssp TTSSCBCT---TSCEEEETTEEEEHHHHHHHHHHTC-CCEEC
T ss_pred ccCCeeec---CCeEEEECCeeehHHHHHHHHHHHh-CcEee
Confidence 68888853 5567777777 6788999999998 76543
No 44
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=25.67 E-value=2.1e+02 Score=23.03 Aligned_cols=61 Identities=10% Similarity=0.284 Sum_probs=41.5
Q ss_pred CcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHhhCCCCCCCcEEEcccc
Q 029752 121 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDG 182 (188)
Q Consensus 121 idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~~~~~ip~~~I~~~~~~ 182 (188)
-.+..+...|...|.-+.+++.+...--+|.-.|--.-.....|.+.+ +++.+.+..++|.
T Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~s~~~~lei~~~~~~K~~~l~~l~~~~-~~~~~~~~~~GD~ 249 (301)
T 2b30_A 189 SESKTVIGNLKQKFKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHY-NISNDQVLVVGDA 249 (301)
T ss_dssp TTHHHHHHHHHHHSTTTEEEEECTTSCEEEEETTCCHHHHHHHHHHHT-TCCGGGEEEEECS
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCcceEecCCCCCcHHHHHHHHHHc-CCCHHHEEEECCC
Confidence 357788888887776555555432233567777766666777777887 9998888777664
No 45
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=23.25 E-value=33 Score=23.88 Aligned_cols=71 Identities=8% Similarity=0.189 Sum_probs=40.4
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHhhhcccceeEeeCCCCCce----EEEcCC----------chHHHHHHHHhhCCCCCC
Q 029752 108 KCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQ----IDVQGD----------ISYDIVEFITDTWPDVPE 173 (188)
Q Consensus 108 K~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~e----I~iQGD----------~~~~v~~~L~~~~~~ip~ 173 (188)
|-+.+|.|...|.-++..+...+-.--.+...+...+.+.+. |++.|. ..+.|.+.|.+.+ +++.
T Consensus 4 ~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~ 82 (109)
T 3gxs_A 4 DDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI-LVTP 82 (109)
T ss_dssp GSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH-SSCC
T ss_pred cCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHHHHHHhh-CCce
Confidence 567888898888888888777653221111111223333333 233342 2345666776666 8887
Q ss_pred CcEEEcc
Q 029752 174 TAIFFIE 180 (188)
Q Consensus 174 ~~I~~~~ 180 (188)
.|.+++
T Consensus 83 -~v~~v~ 88 (109)
T 3gxs_A 83 -RVKLVP 88 (109)
T ss_dssp -EEEEEC
T ss_pred -EEEEEC
Confidence 677765
No 46
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.60 E-value=5.9 Score=26.99 Aligned_cols=29 Identities=24% Similarity=0.689 Sum_probs=18.9
Q ss_pred eeEEEcCCCCCCccccccCCChhhHHHHHH
Q 029752 8 VRVLYCAVCSLPAEYCEFGPDLEKCKPWLI 37 (188)
Q Consensus 8 ~~V~YC~vC~~P~EyCEf~~~~~kCk~wl~ 37 (188)
...+|| +|..|.+.=.+.-.-+.|..|..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH 38 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFH 38 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEE
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEE
Confidence 456899 99999852223333447888953
No 47
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=22.50 E-value=1.3e+02 Score=23.71 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhcc---cceeEeeCCCCCceEEEcCCc---hHHHHHHHHhhC--CCCCCCcEEE
Q 029752 123 LSDASKKLGKKFA---TGASVVKGPTEKEQIDVQGDI---SYDIVEFITDTW--PDVPETAIFF 178 (188)
Q Consensus 123 lk~laK~lkkkfa---cg~SV~k~~~~~~eI~iQGD~---~~~v~~~L~~~~--~~ip~~~I~~ 178 (188)
+..+.|++..+|- +++++.-+ .+...|.|.+|- ...+.++|..++ .||+...+++
T Consensus 19 v~qa~kEi~~RfDFKgs~a~iel~-~k~~~i~l~a~~d~kl~qv~DiL~~kl~KRgid~k~ld~ 81 (163)
T 1in0_A 19 VENANRVLSTRYDFRGVEAVIELN-EKNETIKITTESDFQLEQLIEILIGSCIKRGIEHSSLDI 81 (163)
T ss_dssp HHHHHHHHTTBGGGTTCCEEEEEE-TTTTEEEEEESCHHHHHHHHHHHHHHHHHTTCCGGGEEC
T ss_pred HHHHHHHHhcccccCCCccEEEEc-CCCcEEEEEeCCHHHHHHHHHHHHHHHHHcCCCchhccc
Confidence 4556888889987 88888653 234678888874 566677777553 4888877775
No 48
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=21.51 E-value=97 Score=22.04 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=11.8
Q ss_pred eEEEcCCchHHHHHHHHh
Q 029752 149 QIDVQGDISYDIVEFITD 166 (188)
Q Consensus 149 eI~iQGD~~~~v~~~L~~ 166 (188)
+|.+.|+-.++..+.|.+
T Consensus 74 ~i~a~G~Dee~Al~~l~~ 91 (100)
T 1kkl_H 74 TISASGADENDALNALEE 91 (100)
T ss_dssp EEEEESTTHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHH
Confidence 566889876666555543
No 49
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=21.04 E-value=1e+02 Score=21.17 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=22.5
Q ss_pred CcHHHHHHHHhhhcccceeEeeCCCCCceEEEcCCchHHHHHHHHh
Q 029752 121 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 166 (188)
Q Consensus 121 idlk~laK~lkkkfacg~SV~k~~~~~~eI~iQGD~~~~v~~~L~~ 166 (188)
+|.+.+...|.=-..+|..| +|.+.|+-.++..+.|.+
T Consensus 41 vdaKSim~lmsLg~~~G~~i--------~i~a~G~De~~Al~~l~~ 78 (88)
T 1pch_A 41 GNLKSIMNVMAMAIKTGTEI--------TIQADGNDADQAIQAIKQ 78 (88)
T ss_dssp EETTCHHHHHHHCCCTTCEE--------EEEEESTTHHHHHHHHHH
T ss_pred EehHhHHHHHhcCCCCCCEE--------EEEEeCCCHHHHHHHHHH
Confidence 44455555555444444444 678889876666665543
Done!