RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029752
         (188 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 69.2 bits (169), Expect = 3e-16
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 68  ISSPASSAPKAEEVKHLPGGKIKKKDKKEVVIEKVVRNKRKCITTVKGLELFGVKLSDAS 127
           I +  S  P A+  K         +D   + I++  RN RK +TTV+G+           
Sbjct: 17  IQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQ--RNGRKTLTTVQGIA-DDYDKKKLV 73

Query: 128 KKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 166
           K   KKFA   +V++ P   E I +QGD   +I +F+ +
Sbjct: 74  KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVE 112


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 52.7 bits (127), Expect = 2e-10
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 106 KRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFIT 165
           K K +  + G++L   +L+  + +L KK   G +V  G      I++QGD    +   + 
Sbjct: 16  KGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSLLE 70

Query: 166 D 166
            
Sbjct: 71  A 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 707,991
Number of extensions: 31875
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 8
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)