Query 029753
Match_columns 188
No_of_seqs 248 out of 1565
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 1.9E-28 4E-33 189.7 12.2 108 8-121 98-205 (205)
2 KOG0544 FKBP-type peptidyl-pro 100.0 7.5E-28 1.6E-32 163.6 11.6 106 12-120 2-107 (108)
3 KOG0549 FKBP-type peptidyl-pro 99.9 2.5E-26 5.5E-31 174.4 13.8 116 8-125 65-180 (188)
4 PRK11570 peptidyl-prolyl cis-t 99.9 8.7E-25 1.9E-29 172.8 14.1 108 8-121 99-206 (206)
5 TIGR03516 ppisom_GldI peptidyl 99.9 1.5E-24 3.2E-29 167.8 14.6 113 7-122 65-177 (177)
6 PRK10902 FKBP-type peptidyl-pr 99.9 7.6E-23 1.6E-27 167.4 14.8 113 8-127 143-255 (269)
7 KOG0552 FKBP-type peptidyl-pro 99.9 3.4E-23 7.4E-28 163.7 12.3 110 7-121 116-226 (226)
8 PF00254 FKBP_C: FKBP-type pep 99.9 1.3E-21 2.8E-26 136.3 11.9 89 29-118 5-94 (94)
9 KOG0543 FKBP-type peptidyl-pro 99.8 2.5E-18 5.5E-23 145.1 19.4 130 10-145 83-214 (397)
10 COG0544 Tig FKBP-type peptidyl 99.7 5E-17 1.1E-21 141.4 15.5 137 29-176 158-295 (441)
11 PRK15095 FKBP-type peptidyl-pr 99.7 7.1E-17 1.5E-21 122.6 10.9 70 29-99 5-74 (156)
12 TIGR00115 tig trigger factor. 99.7 4.3E-15 9.4E-20 128.7 16.7 139 28-177 146-286 (408)
13 PRK01490 tig trigger factor; P 99.7 5.1E-15 1.1E-19 129.3 16.8 139 27-176 156-295 (435)
14 COG1047 SlpA FKBP-type peptidy 99.6 4E-15 8.6E-20 113.5 10.3 95 29-124 3-144 (174)
15 PRK10737 FKBP-type peptidyl-pr 99.6 3.6E-15 7.8E-20 116.7 8.8 68 30-99 4-71 (196)
16 KOG0543 FKBP-type peptidyl-pro 99.1 2.8E-10 6.1E-15 96.7 6.4 82 19-118 1-82 (397)
17 KOG0545 Aryl-hydrocarbon recep 98.7 3.5E-08 7.6E-13 79.5 5.2 140 6-146 5-186 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.4 0.00011 2.3E-09 56.7 3.1 56 62-121 1-56 (188)
19 PRK12450 foldase protein PrsA; 68.8 23 0.00049 29.8 7.0 38 60-97 193-233 (309)
20 PRK01326 prsA foldase protein 57.1 82 0.0018 26.4 8.2 22 67-88 197-218 (310)
21 PRK03095 prsA peptidylprolyl i 56.6 52 0.0011 27.2 6.9 22 66-87 184-205 (287)
22 PLN02316 synthase/transferase 50.0 2.5E+02 0.0055 28.0 11.1 11 31-41 327-337 (1036)
23 TIGR01462 greA transcription e 49.4 72 0.0016 23.7 6.1 24 69-92 117-140 (151)
24 PRK05892 nucleoside diphosphat 49.4 45 0.00098 25.2 5.0 22 71-92 123-144 (158)
25 PRK05753 nucleoside diphosphat 48.8 1.1E+02 0.0023 22.5 7.5 22 70-91 92-113 (137)
26 PRK03002 prsA peptidylprolyl i 46.6 1E+02 0.0022 25.4 7.2 22 66-87 188-209 (285)
27 PHA02122 hypothetical protein 45.2 43 0.00093 20.9 3.4 20 31-52 40-59 (65)
28 COG0024 Map Methionine aminope 42.4 1.5E+02 0.0033 24.4 7.3 58 20-85 78-145 (255)
29 PF01272 GreA_GreB: Transcript 40.0 34 0.00075 22.2 2.7 22 71-92 44-65 (77)
30 PRK02998 prsA peptidylprolyl i 37.5 1.2E+02 0.0025 25.1 6.1 22 66-87 186-207 (283)
31 TIGR01461 greB transcription e 37.3 47 0.001 25.0 3.4 24 69-92 119-142 (156)
32 TIGR00495 crvDNA_42K 42K curve 35.7 1.4E+02 0.003 26.0 6.5 51 27-85 99-163 (389)
33 cd01090 Creatinase Creatine am 35.0 1.6E+02 0.0035 23.3 6.4 52 27-86 75-135 (228)
34 PTZ00491 major vault protein; 34.5 82 0.0018 30.4 5.1 22 104-125 622-643 (850)
35 TIGR02925 cis_trans_EpsD pepti 33.3 79 0.0017 24.9 4.3 29 66-96 189-217 (232)
36 PRK04405 prsA peptidylprolyl i 32.5 2.6E+02 0.0056 23.3 7.4 25 62-86 194-218 (298)
37 PF09122 DUF1930: Domain of un 32.3 80 0.0017 20.2 3.3 22 71-92 35-56 (68)
38 PRK10770 peptidyl-prolyl cis-t 31.6 3.2E+02 0.0069 23.5 8.2 22 66-87 328-349 (413)
39 cd01089 PA2G4-like Related to 31.5 2.4E+02 0.0052 22.1 6.9 52 27-86 81-146 (228)
40 TIGR02933 nifM_nitrog nitrogen 30.9 1.8E+02 0.0039 23.5 6.1 22 66-87 183-204 (256)
41 KOG3228 Uncharacterized conser 28.7 2E+02 0.0044 22.8 5.6 27 129-155 126-152 (226)
42 PRK01885 greB transcription el 28.6 80 0.0017 23.8 3.4 23 70-92 122-144 (157)
43 PRK02539 hypothetical protein; 27.9 1E+02 0.0022 20.9 3.5 38 141-178 15-52 (85)
44 PRK08671 methionine aminopepti 27.8 2E+02 0.0044 23.7 6.0 51 27-85 70-126 (291)
45 cd01088 MetAP2 Methionine Amin 27.6 1.8E+02 0.0039 24.0 5.7 51 27-85 69-125 (291)
46 TIGR00501 met_pdase_II methion 27.4 2.1E+02 0.0044 23.8 6.0 50 28-85 74-129 (295)
47 PRK00059 prsA peptidylprolyl i 26.5 3.8E+02 0.0082 22.3 8.9 21 67-87 251-271 (336)
48 PTZ00053 methionine aminopepti 25.3 1.3E+02 0.0028 27.1 4.5 50 28-85 233-288 (470)
49 PF05979 DUF896: Bacterial pro 24.9 74 0.0016 20.5 2.2 40 139-178 11-50 (65)
50 COG0782 Uncharacterized conser 24.5 1.7E+02 0.0036 21.9 4.5 21 71-91 117-137 (151)
51 PLN03158 methionine aminopepti 24.4 3.3E+02 0.0072 23.8 6.9 52 26-85 215-275 (396)
52 COG4345 Uncharacterized protei 24.2 3.4E+02 0.0073 20.9 6.9 30 69-98 75-104 (181)
53 KOG2738 Putative methionine am 23.0 1.5E+02 0.0032 25.3 4.2 62 16-86 185-255 (369)
54 PRK01631 hypothetical protein; 22.5 1.5E+02 0.0033 19.7 3.4 39 140-178 13-51 (76)
55 PF04889 Cwf_Cwc_15: Cwf15/Cwc 22.4 2E+02 0.0043 23.4 4.9 24 132-155 149-172 (244)
56 PRK12897 methionine aminopepti 22.0 4.1E+02 0.0089 21.1 6.7 52 27-86 83-143 (248)
57 COG4224 Uncharacterized protei 21.8 1.6E+02 0.0034 19.5 3.3 38 141-178 15-52 (77)
58 PRK04980 hypothetical protein; 21.6 2.8E+02 0.006 19.5 4.8 30 109-138 46-75 (102)
59 PF00639 Rotamase: PPIC-type P 20.9 1.2E+02 0.0025 20.3 2.8 26 64-89 57-82 (95)
60 PRK01546 hypothetical protein; 20.8 1.6E+02 0.0035 19.7 3.3 38 141-178 16-53 (79)
61 PRK00226 greA transcription el 20.4 1E+02 0.0022 23.1 2.6 23 70-92 123-145 (157)
62 cd01086 MetAP1 Methionine Amin 20.4 4.2E+02 0.0091 20.6 6.6 52 26-85 73-133 (238)
63 PRK12896 methionine aminopepti 20.1 3.9E+02 0.0084 21.1 6.2 51 27-85 89-148 (255)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=189.66 Aligned_cols=108 Identities=43% Similarity=0.718 Sum_probs=101.0
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEE
Q 029753 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 8 ~~~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
+..+||+|++++.|+|.. |.. ||.|++||++++. ||++|||++.++.|+.|.|| .+|+||.++|.+|++|++++
T Consensus 98 ~~~sgl~y~~~~~G~G~~--~~~-~~~V~vhY~G~l~-~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~ 171 (205)
T COG0545 98 TLPSGLQYKVLKAGDGAA--PKK-GDTVTVHYTGTLI-DGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRK 171 (205)
T ss_pred ECCCCcEEEEEeccCCCC--CCC-CCEEEEEEEEecC-CCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEE
Confidence 578999999999999853 443 6999999999998 99999999999999999999 99999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeec
Q 029753 88 LTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (188)
Q Consensus 88 v~vp~~~ayg~~g~~~~ip~~~~l~f~Vel~~v~ 121 (188)
++|||++|||..+.++.|||+++|+|+|+|++|.
T Consensus 172 l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 172 LTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred EEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 9999999999999888899999999999999873
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.5e-28 Score=163.63 Aligned_cols=106 Identities=43% Similarity=0.826 Sum_probs=99.8
Q ss_pred CEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEc
Q 029753 12 GVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCK 91 (188)
Q Consensus 12 Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp 91 (188)
|+.+++|.+|+|. ..|. .||.|++||++.+. ||+.|+|+.+++.||.|.+|.+.+|.||++++..|.+|+++.+.|+
T Consensus 2 Gv~~~~i~~Gdg~-tfpK-~Gqtvt~hYtg~L~-dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPGDGR-TFPK-KGQTVTVHYTGTLQ-DGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCCCCc-ccCC-CCCEEEEEEEeEec-CCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 6889999999984 4454 47999999999997 9999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCcEEEEEEEeee
Q 029753 92 PEYAYGSAGSPPDVPPDATLIFEVELVAC 120 (188)
Q Consensus 92 ~~~ayg~~g~~~~ip~~~~l~f~Vel~~v 120 (188)
|++|||..+.|..||||++|+|+|+|+++
T Consensus 79 pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 79 PDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred cccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999999987
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-26 Score=174.40 Aligned_cols=116 Identities=36% Similarity=0.656 Sum_probs=106.8
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEE
Q 029753 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 8 ~~~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
.+.+.|...++.+-. .|...+..||.|.+||++.+. ||+.|+|||..+.|+.|.||.+++|+||+.+|.+|++||++.
T Consensus 65 ~~~~~l~I~v~~~p~-~C~~kak~GD~l~~HY~g~le-DGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRk 142 (188)
T KOG0549|consen 65 NPDEELQIGVLKKPE-ECPEKAKKGDTLHVHYTGSLE-DGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRK 142 (188)
T ss_pred CCCCceeEEEEECCc-cccccccCCCEEEEEEEEEec-CCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceE
Confidence 356779999999843 377788889999999999886 999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeecCCCC
Q 029753 88 LTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKG 125 (188)
Q Consensus 88 v~vp~~~ayg~~g~~~~ip~~~~l~f~Vel~~v~~~~~ 125 (188)
+.|||+++||+.|.++.||++++|+|+|+|+++.+.+.
T Consensus 143 l~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 143 LIIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred EecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCCC
Confidence 99999999999999889999999999999999987643
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.93 E-value=8.7e-25 Score=172.82 Aligned_cols=108 Identities=35% Similarity=0.558 Sum_probs=99.9
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEE
Q 029753 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 8 ~~~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
++++||+|+|+++|+|. .|.. ||.|+|||++++. ||++|++++..+.|+.|.++ .++|||+++|.+|++|+++.
T Consensus 99 ~t~sGl~y~vi~~G~G~--~p~~-~d~V~v~Y~g~l~-dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~ 172 (206)
T PRK11570 99 STESGLQFRVLTQGEGA--IPAR-TDRVRVHYTGKLI-DGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWE 172 (206)
T ss_pred ECCCCcEEEEEeCCCCC--CCCC-CCEEEEEEEEEEC-CCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEE
Confidence 47899999999999995 3544 6999999999997 99999999988899999997 79999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeec
Q 029753 88 LTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (188)
Q Consensus 88 v~vp~~~ayg~~g~~~~ip~~~~l~f~Vel~~v~ 121 (188)
|.|||.++||..+.++.|||+++|+|+|+|++|.
T Consensus 173 ~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 173 LTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred EEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 9999999999999888999999999999999973
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.92 E-value=1.5e-24 Score=167.78 Aligned_cols=113 Identities=21% Similarity=0.302 Sum_probs=102.0
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEE
Q 029753 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVA 86 (188)
Q Consensus 7 v~~~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~ 86 (188)
..+.+|++|.++..+.|+...|. .||.|++||++++. +|++|++++.. .|+.|.+|.+++++||+++|.+|++||++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~p~-~gd~V~v~Y~~~~~-dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTTPE-FGDLVTFEYDIRAL-DGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred eECCCccEEEEEEecCCCCCcCC-CCCEEEEEEEEEeC-CCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 45789999999988666555565 46999999999998 99999998764 59999999999999999999999999999
Q ss_pred EEEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeecC
Q 029753 87 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRP 122 (188)
Q Consensus 87 ~v~vp~~~ayg~~g~~~~ip~~~~l~f~Vel~~v~~ 122 (188)
+|.+||++|||..+.+..|||+++|+|+|+|++|.+
T Consensus 142 ~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 142 TFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred EEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 999999999999998889999999999999999863
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.90 E-value=7.6e-23 Score=167.39 Aligned_cols=113 Identities=35% Similarity=0.669 Sum_probs=101.3
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEE
Q 029753 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 8 ~~~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
++++||+|+|+++|+|. .|. .||.|+|||++++. ||++|++++..+.|+.|.++ .++|||+++|.+|++|+++.
T Consensus 143 ~t~sGl~y~Vi~~G~G~--~p~-~gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~ 216 (269)
T PRK10902 143 TTSTGLLYKVEKEGTGE--APK-DSDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 216 (269)
T ss_pred ECCCccEEEEEeCCCCC--CCC-CCCEEEEEEEEEeC-CCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEE
Confidence 47899999999999995 454 46999999999986 99999999888889998886 79999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeecCCCCCC
Q 029753 88 LTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSS 127 (188)
Q Consensus 88 v~vp~~~ayg~~g~~~~ip~~~~l~f~Vel~~v~~~~~~~ 127 (188)
|+||++++||..+.+ .|||+++|+|+|+|++|.+++...
T Consensus 217 l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~~~~ 255 (269)
T PRK10902 217 LVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAPKAD 255 (269)
T ss_pred EEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCcccc
Confidence 999999999999875 699999999999999998754443
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-23 Score=163.73 Aligned_cols=110 Identities=36% Similarity=0.679 Sum_probs=100.2
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEE-EEeCCCCchHHHHHHHccCcCCCE
Q 029753 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS-FELGKGSVIRAWDIALRSMKVGEV 85 (188)
Q Consensus 7 v~~~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~-~~lG~~~~i~g~e~aL~gmk~Ge~ 85 (188)
.+..+||+|..++-|+|. .|. .|+.|.+||.+++..+|.+|++++. +.|+. |.+|.+.+|+||+.++.+|++|.+
T Consensus 116 ~tl~~Gl~y~D~~vG~G~--~a~-~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGk 191 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGP--SAK-KGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGK 191 (226)
T ss_pred eecCCCcEEEEEEecCCC--CCC-CCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCe
Confidence 467899999999999985 243 3799999999999778999999976 47888 999999999999999999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeec
Q 029753 86 AKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (188)
Q Consensus 86 ~~v~vp~~~ayg~~g~~~~ip~~~~l~f~Vel~~v~ 121 (188)
++|+|||+++||..+++ .|||+++|+|+|+|+.|.
T Consensus 192 RrviIPp~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 192 RRVIIPPELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred eEEEeCccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 99999999999999986 799999999999999873
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.87 E-value=1.3e-21 Score=136.32 Aligned_cols=89 Identities=44% Similarity=0.821 Sum_probs=83.3
Q ss_pred CCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCCCC-CCCCCC
Q 029753 29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS-PPDVPP 107 (188)
Q Consensus 29 ~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~g~-~~~ip~ 107 (188)
+..||.|+|||++++. +|+.|++++....|+.|.+|.+.+++||+++|.+|++|+++.|.|||+++||..+. +..||+
T Consensus 5 ~~~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~ 83 (94)
T PF00254_consen 5 PKEGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPP 83 (94)
T ss_dssp BSTTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTT
T ss_pred CCCCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCC
Confidence 3457999999999998 99999999888899999999999999999999999999999999999999999988 447999
Q ss_pred CCcEEEEEEEe
Q 029753 108 DATLIFEVELV 118 (188)
Q Consensus 108 ~~~l~f~Vel~ 118 (188)
+++|+|+|+|+
T Consensus 84 ~~~l~f~Iell 94 (94)
T PF00254_consen 84 NSTLVFEIELL 94 (94)
T ss_dssp TSEEEEEEEEE
T ss_pred CCeEEEEEEEC
Confidence 99999999985
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-18 Score=145.11 Aligned_cols=130 Identities=44% Similarity=0.720 Sum_probs=107.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCC-CCchHHHHHHHccCcCCCEEEE
Q 029753 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGK-GSVIRAWDIALRSMKVGEVAKL 88 (188)
Q Consensus 10 ~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~-~~~i~g~e~aL~gmk~Ge~~~v 88 (188)
|++|.++|+++|.|+..+|.+ |.+|++||.+++. +.+|+++ ..+|.|.+|+ ..+|.||+.+|..|++||.+.|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~-g~~V~v~~~G~~~--~~~f~~~---~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v 156 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNK-GAVVKVHLEGELE--DGVFDQR---ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALV 156 (397)
T ss_pred CCceEEeeeecCCCCCCCCCC-CcEEEEEEEEEEC--Ccceecc---ccceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence 999999999999997667776 5999999999994 4478774 3458888887 4799999999999999999999
Q ss_pred EEcCCCccC-CCCCCCCCCCCCcEEEEEEEeeecCCCCCCCCChHHHHHHHHHHHHHH
Q 029753 89 TCKPEYAYG-SAGSPPDVPPDATLIFEVELVACRPRKGSSLGSVSEERARLEELKRQR 145 (188)
Q Consensus 89 ~vp~~~ayg-~~g~~~~ip~~~~l~f~Vel~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (188)
+|+|.++|| ..+.++.|||+++|.|+|+|+++.......+.+..+++...+..++++
T Consensus 157 ~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~ 214 (397)
T KOG0543|consen 157 TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKER 214 (397)
T ss_pred EeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHh
Confidence 999999999 556677999999999999999999544444444445566666666555
No 10
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5e-17 Score=141.40 Aligned_cols=137 Identities=23% Similarity=0.320 Sum_probs=107.6
Q ss_pred CCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCCCCCCCCCCC
Q 029753 29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPD 108 (188)
Q Consensus 29 ~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~g~~~~ip~~ 108 (188)
++.||.|+|+|.++. ||..|++. ....+.|.||+++|||||+++|.||+.|++..|.|.+|..|+...+ +|
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg--~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aG 228 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGG--KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AG 228 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCc--cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CC
Confidence 566899999999999 99999995 5577999999999999999999999999999999999999999998 99
Q ss_pred CcEEEEEEEeeecCCCCCCCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029753 109 ATLIFEVELVACRPRKGSSLGSVSEERARLE-ELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEA 176 (188)
Q Consensus 109 ~~l~f~Vel~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (188)
+++.|.|+|+.|+.+..+++++.++.....+ .+.+.++.. +.++++++.+...+..+..+..+|..
T Consensus 229 K~a~F~V~vkeVk~~elpEldDEfAk~~~~~~tL~~Lk~~~--r~~le~~~~~~~~~~~~~~~~~~L~e 295 (441)
T COG0544 229 KEATFKVKVKEVKKRELPELDDEFAKKLGEEDTLEELKEKL--RKNLERELKEATLEKRKEQLLDALVE 295 (441)
T ss_pred CceEEEEEEEEEeecCCCCCCHHHHHhcCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988776544 244433222 23333333333334444444444433
No 11
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.72 E-value=7.1e-17 Score=122.61 Aligned_cols=70 Identities=27% Similarity=0.446 Sum_probs=65.1
Q ss_pred CCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCC
Q 029753 29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSA 99 (188)
Q Consensus 29 ~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~ 99 (188)
...||.|++||++++. ||++|++|+..+.|+.|.+|.+++++||+++|.+|++|+++.|.|||..|||..
T Consensus 5 i~~~~~V~v~Y~~~~~-dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 5 VQSNSAVLVHFTLKLD-DGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred cCCCCEEEEEEEEEeC-CCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 3457999999999996 899999998777999999999999999999999999999999999999999974
No 12
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.66 E-value=4.3e-15 Score=128.74 Aligned_cols=139 Identities=23% Similarity=0.327 Sum_probs=105.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCCCCCCCCCC
Q 029753 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107 (188)
Q Consensus 28 p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~g~~~~ip~ 107 (188)
|+..||.|++||+++. +|..|+++. ..++.|.+|.+.++|||+++|.||++|++++|.++++.+|+...+ +
T Consensus 146 ~~~~gD~V~v~~~~~~--dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI--DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred ccCCCCEEEEEEEEEE--CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 5666899999999988 899999863 478999999999999999999999999999999999999998877 8
Q ss_pred CCcEEEEEEEeeecCCCCCCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029753 108 DATLIFEVELVACRPRKGSSLGSVSEERARL--EELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAK 177 (188)
Q Consensus 108 ~~~l~f~Vel~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (188)
|+++.|+|+|.+|+....+++++.++..... ..+.+.|+.. ++.++++....+....+..+-.+|.++
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~~~~~~t~~elr~~i--k~~l~~~~~~~~~~~~~~~i~~~l~~~ 286 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKELGEEFETLEELKADI--RKNLEREKKERAKNKLKEQLLDKLVEN 286 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhcCCccCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888888776665532 2333333222 233334444444444444444444443
No 13
>PRK01490 tig trigger factor; Provisional
Probab=99.66 E-value=5.1e-15 Score=129.28 Aligned_cols=139 Identities=22% Similarity=0.339 Sum_probs=104.5
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCCCCCCCCC
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~g~~~~ip 106 (188)
+|+..||.|++||+++. +|..|+++ ...++.|.+|.+.++|||+++|.||++|+++.|.++++..|+...+
T Consensus 156 ~~~~~gD~V~vd~~~~~--~g~~~~~~--~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----- 226 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI--DGEEFEGG--KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----- 226 (435)
T ss_pred ccCCCCCEEEEEEEEEE--CCEECcCC--CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence 35677899999999998 89999885 3467999999999999999999999999999999999999998877
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029753 107 PDATLIFEVELVACRPRKGSSLGSVSEERARL-EELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEA 176 (188)
Q Consensus 107 ~~~~l~f~Vel~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (188)
+|.++.|.|+|.+|+....+++++.++..... ..+.+.++ ..++.++++....+....+..+-++|.+
T Consensus 227 agk~~~f~v~v~~V~~~~~pel~Defak~~~~~~tleelk~--~ik~~l~~~~~~~~~~~~~~~i~~~L~~ 295 (435)
T PRK01490 227 AGKEATFKVTVKEVKEKELPELDDEFAKKLGEFETLEELKA--DIRKNLEREKKEAQRAKVKEAVLDALVE 295 (435)
T ss_pred CCCeEEEEEEEEEeccCCCCCCCHHHHHhcCCcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998888888776665432 22333322 2223333333344444444444444443
No 14
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4e-15 Score=113.53 Aligned_cols=95 Identities=34% Similarity=0.455 Sum_probs=81.8
Q ss_pred CCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCCCCC------
Q 029753 29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP------ 102 (188)
Q Consensus 29 ~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~g~~------ 102 (188)
...||.|++||++++. ||++|++|.....|+.|.+|.++++|||++||.+|.+|++.+|.|||+.|||.....
T Consensus 3 i~k~~~V~i~Y~~~~~-dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lvq~vp 81 (174)
T COG1047 3 IEKGDVVSLHYTLKVE-DGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLVQRVP 81 (174)
T ss_pred ccCCCEEEEEEEEEec-CCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHeEEec
Confidence 3457999999999997 699999997656899999999999999999999999999999999999999984320
Q ss_pred -----C------------------------------------CCCCCCcEEEEEEEeeecCCC
Q 029753 103 -----P------------------------------------DVPPDATLIFEVELVACRPRK 124 (188)
Q Consensus 103 -----~------------------------------------~ip~~~~l~f~Vel~~v~~~~ 124 (188)
. ..-||++|.|+|+|+++++..
T Consensus 82 ~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~a~ 144 (174)
T COG1047 82 RDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVREAT 144 (174)
T ss_pred HHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEecCh
Confidence 0 123589999999999998753
No 15
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.60 E-value=3.6e-15 Score=116.66 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=63.1
Q ss_pred CCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCC
Q 029753 30 EDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSA 99 (188)
Q Consensus 30 ~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~ 99 (188)
..+++|+|+|++++. +|++|++|+. ..|+.|.+|.++++|+||++|.+|.+|++++|.|||+.|||..
T Consensus 4 ~~~~vV~l~Y~l~~~-dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 4 AKDLVVSLAYQVRTE-DGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred CCCCEEEEEEEEEeC-CCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 346899999999996 8999999865 5899999999999999999999999999999999999999984
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.8e-10 Score=96.66 Aligned_cols=82 Identities=46% Similarity=0.894 Sum_probs=72.9
Q ss_pred EcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCC
Q 029753 19 RQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGS 98 (188)
Q Consensus 19 ~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~ 98 (188)
++|+|. ..|.. ||.|.+||++++. ||+.|+||.+ +.|+.|.+|.+.+|.+|..++..|+. |.
T Consensus 1 ~eg~g~-~~p~~-g~~v~~hytg~l~-dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~ 62 (397)
T KOG0543|consen 1 KEGTGT-ETPMT-GDKVEVHYTGTLL-DGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GE 62 (397)
T ss_pred CCCCCc-cCCCC-CceeEEEEeEEec-CCeecccccC-CCceeeecCCCccccccccccccccc--------------cc
Confidence 367776 44655 6999999999998 9999999988 78999999999999999999999987 77
Q ss_pred CCCCCCCCCCCcEEEEEEEe
Q 029753 99 AGSPPDVPPDATLIFEVELV 118 (188)
Q Consensus 99 ~g~~~~ip~~~~l~f~Vel~ 118 (188)
.+.|+.||++.+|.|+|+|.
T Consensus 63 ~~~pp~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 63 AGSPPKIPSNATLLFEVELL 82 (397)
T ss_pred cCCCCCCCCCcceeeeeccc
Confidence 77888999999999999974
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.5e-08 Score=79.46 Aligned_cols=140 Identities=24% Similarity=0.303 Sum_probs=99.9
Q ss_pred cccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcC-CCcEEeccCCCCeeEEEEeCCCCchHHHHHHHccCcCCC
Q 029753 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAE-TGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGE 84 (188)
Q Consensus 6 dv~~~~Gl~~~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~-dg~~~~st~~~~~~~~~~lG~~~~i~g~e~aL~gmk~Ge 84 (188)
..+.-.||.++||..|+|. ...-.+|..|++||.....+ .++++|+|..-+.|+.+++|...-+|-||..|..|.++|
T Consensus 5 a~l~~~gv~Kril~~G~g~-l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~E 83 (329)
T KOG0545|consen 5 ALLNVEGVKKRILHGGTGE-LPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHE 83 (329)
T ss_pred hhccchhhhHhhccCCCcc-CccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence 4456789999999999985 33445589999999987753 456899998889999999999999999999999999999
Q ss_pred EEEEEEcCCC--------------ccCCC--------------------CCCC---CCCCCCcEEEEEEEeeecCCC---
Q 029753 85 VAKLTCKPEY--------------AYGSA--------------------GSPP---DVPPDATLIFEVELVACRPRK--- 124 (188)
Q Consensus 85 ~~~v~vp~~~--------------ayg~~--------------------g~~~---~ip~~~~l~f~Vel~~v~~~~--- 124 (188)
.+.|++.... +-|.. |+.. ...--++|+|.|+|..|..|.
T Consensus 84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 9888765322 11211 1100 112347999999999999773
Q ss_pred -CCCCCChHHHHHHHHHHHHHHH
Q 029753 125 -GSSLGSVSEERARLEELKRQRE 146 (188)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~ 146 (188)
++|..+..++.....-+..+..
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN 186 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGN 186 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhh
Confidence 4455555444444444444433
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00011 Score=56.66 Aligned_cols=56 Identities=34% Similarity=0.472 Sum_probs=43.8
Q ss_pred EEeCCCCchHHHHHHHccCcCCCEEEEEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeec
Q 029753 62 FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (188)
Q Consensus 62 ~~lG~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~~g~~~~ip~~~~l~f~Vel~~v~ 121 (188)
|.+|.+.+||+++.+|.+|+.|+++.+.+||+++||..+.. .-..++|.+.++.+-
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~ 56 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLF 56 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehh
Confidence 35788899999999999999999999999999999954431 222456666666543
No 19
>PRK12450 foldase protein PrsA; Reviewed
Probab=68.83 E-value=23 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=26.5
Q ss_pred EEEEeCCCCchHHHHHHHccCcCCCEEEEE-E--cCCCccC
Q 029753 60 FSFELGKGSVIRAWDIALRSMKVGEVAKLT-C--KPEYAYG 97 (188)
Q Consensus 60 ~~~~lG~~~~i~g~e~aL~gmk~Ge~~~v~-v--p~~~ayg 97 (188)
..|.-|.+.++|.|++++-.|++|+...+. + |....||
T Consensus 193 ~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~G 233 (309)
T PRK12450 193 YTFDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRT 233 (309)
T ss_pred ccccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCc
Confidence 334445567999999999999999986543 2 4444444
No 20
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=57.13 E-value=82 Score=26.38 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=18.7
Q ss_pred CCchHHHHHHHccCcCCCEEEE
Q 029753 67 GSVIRAWDIALRSMKVGEVAKL 88 (188)
Q Consensus 67 ~~~i~g~e~aL~gmk~Ge~~~v 88 (188)
..+++.|.+++..|++|+....
T Consensus 197 ~~l~~~~~~a~~~Lk~GevS~p 218 (310)
T PRK01326 197 TNVPEQVKKAAFALDEDGVSDV 218 (310)
T ss_pred CcccHHHHHHHHcCCCCCcCCc
Confidence 4678899999999999997654
No 21
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=56.65 E-value=52 Score=27.24 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHccCcCCCEEE
Q 029753 66 KGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 66 ~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
.+.++|.|..++..|++|+...
T Consensus 184 ~~~L~~~~~~al~~L~~GevS~ 205 (287)
T PRK03095 184 AGKMVKEFEDAAYKLKKDEVSE 205 (287)
T ss_pred cccccHHHHHHHHhCCCCCcCC
Confidence 4578999999999999999654
No 22
>PLN02316 synthase/transferase
Probab=50.03 E-value=2.5e+02 Score=27.95 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=8.5
Q ss_pred CCCEEEEEEEE
Q 029753 31 DLPLVDVHYEG 41 (188)
Q Consensus 31 ~Gd~V~v~y~~ 41 (188)
.|+.|+|.|.-
T Consensus 327 aG~~v~lyYN~ 337 (1036)
T PLN02316 327 AGDTVKLYYNR 337 (1036)
T ss_pred CCCEEEEEECC
Confidence 37899998873
No 23
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=49.40 E-value=72 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.0
Q ss_pred chHHHHHHHccCcCCCEEEEEEcC
Q 029753 69 VIRAWDIALRSMKVGEVAKLTCKP 92 (188)
Q Consensus 69 ~i~g~e~aL~gmk~Ge~~~v~vp~ 92 (188)
+..-+-.||.|.++||.+.+.+|.
T Consensus 117 ~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 117 IDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred CCCHHHHHHcCCCCCCEEEEEeCC
Confidence 345688999999999999988763
No 24
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=49.39 E-value=45 Score=25.20 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.7
Q ss_pred HHHHHHHccCcCCCEEEEEEcC
Q 029753 71 RAWDIALRSMKVGEVAKLTCKP 92 (188)
Q Consensus 71 ~g~e~aL~gmk~Ge~~~v~vp~ 92 (188)
.-+-.||.|.++||.+.+.+|.
T Consensus 123 SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 123 SPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred CHHHHHHhCCCCCCEEEEEcCC
Confidence 4578999999999999988763
No 25
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=48.75 E-value=1.1e+02 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.8
Q ss_pred hHHHHHHHccCcCCCEEEEEEc
Q 029753 70 IRAWDIALRSMKVGEVAKLTCK 91 (188)
Q Consensus 70 i~g~e~aL~gmk~Ge~~~v~vp 91 (188)
..-+-.||.|.++||.+.+..|
T Consensus 92 ~SPlG~ALlG~~~Gd~v~v~~p 113 (137)
T PRK05753 92 LAPVGAALLGLSVGQSIDWPLP 113 (137)
T ss_pred cCHHHHHHcCCCCCCEEEEECC
Confidence 4568899999999999998865
No 26
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=46.64 E-value=1e+02 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHccCcCCCEEE
Q 029753 66 KGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 66 ~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
.+.+.|.|..++..|++|+...
T Consensus 188 ~~~l~p~~~~a~~~L~~GevS~ 209 (285)
T PRK03002 188 SGRMAPEFETAAYKLKVGQISN 209 (285)
T ss_pred cccCCHHHHHHHHcCCCCCcCC
Confidence 4578999999999999999765
No 27
>PHA02122 hypothetical protein
Probab=45.16 E-value=43 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=16.8
Q ss_pred CCCEEEEEEEEEEcCCCcEEec
Q 029753 31 DLPLVDVHYEGSLAETGEVFDT 52 (188)
Q Consensus 31 ~Gd~V~v~y~~~~~~dg~~~~s 52 (188)
.||-|.++|.... +|..|-+
T Consensus 40 ~gd~v~vn~e~~~--ng~l~i~ 59 (65)
T PHA02122 40 DGDEVIVNFELVV--NGKLIIN 59 (65)
T ss_pred CCCEEEEEEEEEE--CCEEEEe
Confidence 3799999999999 8887754
No 28
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=42.38 E-value=1.5e+02 Score=24.35 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=39.1
Q ss_pred cCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC------ch----HHHHHHHccCcCCCE
Q 029753 20 QAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS------VI----RAWDIALRSMKVGEV 85 (188)
Q Consensus 20 ~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~------~i----~g~e~aL~gmk~Ge~ 85 (188)
.|.++.....+.||.|.|++...+ ||-.-|+ ..+|.+|... ++ .+|+.++..+++|-+
T Consensus 78 HgiP~d~~vlk~GDiv~IDvg~~~--dG~~~Ds------a~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~ 145 (255)
T COG0024 78 HGIPGDKKVLKEGDIVKIDVGAHI--DGYIGDT------AITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGAR 145 (255)
T ss_pred ecCCCCCcccCCCCEEEEEEEEEE--CCeeeeE------EEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 344333456677999999999999 8866665 3778888421 33 357777777777764
No 29
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=40.00 E-value=34 Score=22.24 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=17.2
Q ss_pred HHHHHHHccCcCCCEEEEEEcC
Q 029753 71 RAWDIALRSMKVGEVAKLTCKP 92 (188)
Q Consensus 71 ~g~e~aL~gmk~Ge~~~v~vp~ 92 (188)
.-+-.||.|.++||.+.+.+|.
T Consensus 44 SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 44 SPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp SHHHHHHTT-BTT-EEEEEETT
T ss_pred CHHHHHhcCCCCCCEEEEEeCC
Confidence 4578999999999999999863
No 30
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=37.54 E-value=1.2e+02 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHccCcCCCEEE
Q 029753 66 KGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 66 ~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
.+.++|.|..++-.|++|+...
T Consensus 186 ~~~l~~~~~~a~~~Lk~GevS~ 207 (283)
T PRK02998 186 PGQTVKEFEEAAYKLDAGQVSE 207 (283)
T ss_pred CCcchHHHHHHHHcCCCCCcCC
Confidence 4578899999999999999654
No 31
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=37.26 E-value=47 Score=25.03 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=19.7
Q ss_pred chHHHHHHHccCcCCCEEEEEEcC
Q 029753 69 VIRAWDIALRSMKVGEVAKLTCKP 92 (188)
Q Consensus 69 ~i~g~e~aL~gmk~Ge~~~v~vp~ 92 (188)
+..-+-.||.|.++||.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 334588999999999999988763
No 32
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=35.70 E-value=1.4e+02 Score=26.05 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCC---C-------c----hHHHHHHHccCcCCCE
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG---S-------V----IRAWDIALRSMKVGEV 85 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~---~-------~----i~g~e~aL~gmk~Ge~ 85 (188)
+....||.|.|++-+.+ ||-..+. ..+|.+|.. . + ..+++.++..|++|-+
T Consensus 99 ~~Lk~GDvVkIDlG~~i--dGY~aD~------arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~ 163 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI--DGFIALV------AHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNT 163 (389)
T ss_pred cCcCCCCEEEEEEEEEE--CCEEEEE------EEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 44567899999999999 8865554 366777731 1 1 2356678888888764
No 33
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=35.00 E-value=1.6e+02 Score=23.28 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC---------chHHHHHHHccCcCCCEE
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVA 86 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~---------~i~g~e~aL~gmk~Ge~~ 86 (188)
++.+.||.|.+++...+ +|-..+ ...+|.+|.-. ...+++.++..+++|-++
T Consensus 75 r~l~~GD~v~~d~g~~~--~GY~ad------~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~ 135 (228)
T cd01090 75 RKVQRGDILSLNCFPMI--AGYYTA------LERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARC 135 (228)
T ss_pred cccCCCCEEEEEEeEEE--CCEeee------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 45567899999998877 674333 23566676322 344566777778887653
No 34
>PTZ00491 major vault protein; Provisional
Probab=34.53 E-value=82 Score=30.37 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.4
Q ss_pred CCCCCCcEEEEEEEeeecCCCC
Q 029753 104 DVPPDATLIFEVELVACRPRKG 125 (188)
Q Consensus 104 ~ip~~~~l~f~Vel~~v~~~~~ 125 (188)
.+|++.-++..|++.++++...
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~ 643 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDE 643 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCH
Confidence 4689999999999999987543
No 35
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=33.30 E-value=79 Score=24.88 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=22.0
Q ss_pred CCCchHHHHHHHccCcCCCEEEEEEcCCCcc
Q 029753 66 KGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96 (188)
Q Consensus 66 ~~~~i~g~e~aL~gmk~Ge~~~v~vp~~~ay 96 (188)
.++++|.|.+++..|++|+.. . |....+|
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 457999999999999999975 3 4443333
No 36
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=32.50 E-value=2.6e+02 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEeCCCCchHHHHHHHccCcCCCEE
Q 029753 62 FELGKGSVIRAWDIALRSMKVGEVA 86 (188)
Q Consensus 62 ~~lG~~~~i~g~e~aL~gmk~Ge~~ 86 (188)
|..+.+.++|.|++++..|++|+..
T Consensus 194 ~~~~~~~l~~~f~~a~~~L~~Geis 218 (298)
T PRK04405 194 FDSTDTTLDSTFKTAAFKLKNGEYT 218 (298)
T ss_pred cccCCCCCCHHHHHHHHcCCCCCcc
Confidence 3334567999999999999999974
No 37
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=32.34 E-value=80 Score=20.20 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.0
Q ss_pred HHHHHHHccCcCCCEEEEEEcC
Q 029753 71 RAWDIALRSMKVGEVAKLTCKP 92 (188)
Q Consensus 71 ~g~e~aL~gmk~Ge~~~v~vp~ 92 (188)
+-+..|+..|+.||++.++..+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 4688999999999999988753
No 38
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=31.59 E-value=3.2e+02 Score=23.54 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHccCcCCCEEE
Q 029753 66 KGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 66 ~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
.+.+.|.|+.+|..|++|+...
T Consensus 328 ~~~~~~~~~~~~~~l~~GeiS~ 349 (413)
T PRK10770 328 PDIFDPAFRDALMRLNKGQISA 349 (413)
T ss_pred ccccCHHHHHHHHcCCCCCcCC
Confidence 4568899999999999999765
No 39
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=31.49 E-value=2.4e+02 Score=22.12 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC-------c-------hHHHHHHHccCcCCCEE
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS-------V-------IRAWDIALRSMKVGEVA 86 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~-------~-------i~g~e~aL~gmk~Ge~~ 86 (188)
++.+.||.|.+++-+.+ +|-.-+ ...+|.+|... . ..+.+.++..|++|-++
T Consensus 81 ~~l~~Gd~v~iD~g~~~--~GY~sD------~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~ 146 (228)
T cd01089 81 YTLKDGDVVKIDLGCHI--DGYIAV------VAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQN 146 (228)
T ss_pred cccCCCCEEEEEEEEEE--CCEEEE------EEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 44567899999998888 775443 33566677431 1 24466777888888653
No 40
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=30.87 E-value=1.8e+02 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHccCcCCCEEE
Q 029753 66 KGSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 66 ~~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
.+.++|.|..+|..|++|+...
T Consensus 183 ~~~l~~~~~~~l~~L~~G~vS~ 204 (256)
T TIGR02933 183 RGLLYPQLDAALFQLAEGELSP 204 (256)
T ss_pred CCccChHHHHHHHcCCCCCcCC
Confidence 3468899999999999999765
No 41
>KOG3228 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=2e+02 Score=22.78 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029753 129 GSVSEERARLEELKRQRELAAAVKEEE 155 (188)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (188)
++..+....++.++++|.+.+++++.+
T Consensus 126 Ddt~aLlaele~ikkERaee~~~~e~e 152 (226)
T KOG3228|consen 126 DDTQALLAELENIKKERAEEQARKEEE 152 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777778888887777777733
No 42
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=28.57 E-value=80 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=19.3
Q ss_pred hHHHHHHHccCcCCCEEEEEEcC
Q 029753 70 IRAWDIALRSMKVGEVAKLTCKP 92 (188)
Q Consensus 70 i~g~e~aL~gmk~Ge~~~v~vp~ 92 (188)
..-+-.+|.|.++||.+.+.+|.
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCC
Confidence 34577999999999999988764
No 43
>PRK02539 hypothetical protein; Provisional
Probab=27.95 E-value=1e+02 Score=20.90 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029753 141 LKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK 178 (188)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (188)
..+.+.+...+++.++.+++++.+..|..++.+|...+
T Consensus 15 K~K~~gLT~eEk~Eq~~LR~eYl~~fR~~~~~~L~~i~ 52 (85)
T PRK02539 15 KKKTEGLTGEEKVEQAKLREEYIEGYRRSVRHHIEGIK 52 (85)
T ss_pred HhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 44445555666777888889999999999999987643
No 44
>PRK08671 methionine aminopeptidase; Provisional
Probab=27.84 E-value=2e+02 Score=23.72 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC------chHHHHHHHccCcCCCE
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS------VIRAWDIALRSMKVGEV 85 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~------~i~g~e~aL~gmk~Ge~ 85 (188)
+....||.|.+++-+.+ +|-..+. ..++.+|... ...+++.++..+++|-+
T Consensus 70 ~~l~~GDvV~iD~G~~~--dGY~aD~------arT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 70 RVFPEGDVVKLDLGAHV--DGYIADT------AVTVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred cccCCCCEEEEEEeEEE--CCEEEEE------EEEEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34566899999998887 7865554 3566677422 23457777778888754
No 45
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=27.64 E-value=1.8e+02 Score=24.01 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC------chHHHHHHHccCcCCCE
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS------VIRAWDIALRSMKVGEV 85 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~------~i~g~e~aL~gmk~Ge~ 85 (188)
+....||.|.+++-+.+ +|-..|. ..+|.+|... ...+++.++..|++|-+
T Consensus 69 ~~l~~GDvV~iD~G~~~--dGY~sD~------arT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~ 125 (291)
T cd01088 69 TVLKEGDVVKLDFGAHV--DGYIADS------AFTVDFDPKYDDLLEAAKEALNAAIKEAGPDVR 125 (291)
T ss_pred cccCCCCEEEEEEEEEE--CCEEEEE------EEEEecChhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34566899999998888 7854443 3556666432 33567778888888874
No 46
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=27.39 E-value=2.1e+02 Score=23.78 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCC--C----chHHHHHHHccCcCCCE
Q 029753 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG--S----VIRAWDIALRSMKVGEV 85 (188)
Q Consensus 28 p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~--~----~i~g~e~aL~gmk~Ge~ 85 (188)
....||.|.+++-+.. ||-..+. ..+|.+|.. . ...+++.++..|++|-+
T Consensus 74 ~l~~GDvV~iD~G~~~--dGY~aD~------arT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~ 129 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHV--DGYIADT------AITVDLGDQYDNLVKAAKDALYTAIKEIRAGVR 129 (295)
T ss_pred cCCCCCEEEEEEeEEE--CCEEEEE------EEEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4566899999998888 7865543 356677753 1 23456667777788764
No 47
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=26.46 E-value=3.8e+02 Score=22.31 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.2
Q ss_pred CCchHHHHHHHccCcCCCEEE
Q 029753 67 GSVIRAWDIALRSMKVGEVAK 87 (188)
Q Consensus 67 ~~~i~g~e~aL~gmk~Ge~~~ 87 (188)
+.+.|.|..++..|++|+...
T Consensus 251 ~~l~~~~~~a~~~l~~Gevs~ 271 (336)
T PRK00059 251 SGYDKEFMDGAKALKEGEISA 271 (336)
T ss_pred CccCHHHHHHHHcCCCCCcCc
Confidence 578899999999999999653
No 48
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=25.28 E-value=1.3e+02 Score=27.12 Aligned_cols=50 Identities=8% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCC--C----chHHHHHHHccCcCCCE
Q 029753 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG--S----VIRAWDIALRSMKVGEV 85 (188)
Q Consensus 28 p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~--~----~i~g~e~aL~gmk~Ge~ 85 (188)
....||.|.|++-+.+ +|-..+.+ ++|.+|.. . ...+++.||.-+++|-+
T Consensus 233 vLk~GDvVkID~G~~v--dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 233 VLTYDDVCKLDFGTHV--NGRIIDCA------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred EecCCCeEEEEEeEEE--CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4566899999999999 89877763 55556632 1 23456667777777654
No 49
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=24.86 E-value=74 Score=20.45 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029753 139 EELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK 178 (188)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (188)
+...+.+.....+.+.++.+++++....+..++.+|...+
T Consensus 11 a~K~K~~gLT~eE~~Eq~~LR~eYl~~fR~~~~~~L~~i~ 50 (65)
T PF05979_consen 11 AKKSKEEGLTEEEKAEQAELRQEYLQNFRGNFRSQLENIK 50 (65)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHTTHHHHHHCSSTT-
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccee
Confidence 3344555666667777888889999999999988876543
No 50
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=24.53 E-value=1.7e+02 Score=21.93 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.1
Q ss_pred HHHHHHHccCcCCCEEEEEEc
Q 029753 71 RAWDIALRSMKVGEVAKLTCK 91 (188)
Q Consensus 71 ~g~e~aL~gmk~Ge~~~v~vp 91 (188)
.-+-.+|.|.++||.+.+..|
T Consensus 117 SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 117 SPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred CHHHHHHhCCCCCCEEEEecC
Confidence 457789999999999998876
No 51
>PLN03158 methionine aminopeptidase; Provisional
Probab=24.45 E-value=3.3e+02 Score=23.82 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=35.7
Q ss_pred CCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC---------chHHHHHHHccCcCCCE
Q 029753 26 LSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (188)
Q Consensus 26 ~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~---------~i~g~e~aL~gmk~Ge~ 85 (188)
.++.+.||.|.|+..++. +|---+ ...+|.+|.-. ...+++.++..+++|-.
T Consensus 215 ~r~L~~GDiV~iDvg~~~--~GY~aD------~tRT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 215 ARKLEDGDIVNVDVTVYY--KGCHGD------LNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred CccCCCCCEEEEEEeEEE--CCEEEe------EEeEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456778999999999988 774333 23556667421 34567778888888853
No 52
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.25 E-value=3.4e+02 Score=20.94 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=21.1
Q ss_pred chHHHHHHHccCcCCCEEEEEEcCCCccCC
Q 029753 69 VIRAWDIALRSMKVGEVAKLTCKPEYAYGS 98 (188)
Q Consensus 69 ~i~g~e~aL~gmk~Ge~~~v~vp~~~ayg~ 98 (188)
+-+-+.+-++.|++|..-.+.|.....|-.
T Consensus 75 lnk~i~EkliemgVgk~DVvrIsv~~~~~d 104 (181)
T COG4345 75 LNKRIYEKLIEMGVGKLDVVRISVDADIED 104 (181)
T ss_pred HhHHHHHHHHHhccCccceEEEEEEEEecC
Confidence 334556666779999987777777777744
No 53
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.01 E-value=1.5e+02 Score=25.28 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC---------chHHHHHHHccCcCCCEE
Q 029753 16 KIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVA 86 (188)
Q Consensus 16 ~il~~G~g~~~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~---------~i~g~e~aL~gmk~Ge~~ 86 (188)
.++-.|-.+ .+|.++||+|-|+.+.|. +|- .. .-.-+|-+|.-. -...|+.|+.-.++|.+.
T Consensus 185 EviCHGIPD-~RpLedGDIvNiDVtvY~--~Gy--HG----DlneTffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~f 255 (369)
T KOG2738|consen 185 EVICHGIPD-SRPLEDGDIVNIDVTVYL--NGY--HG----DLNETFFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSF 255 (369)
T ss_pred heeecCCCC-cCcCCCCCEEeEEEEEEe--ccc--cC----ccccceEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 456778776 679999999999999998 662 21 123455555311 124678888888888753
No 54
>PRK01631 hypothetical protein; Provisional
Probab=22.51 E-value=1.5e+02 Score=19.67 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029753 140 ELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK 178 (188)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (188)
...+.+.....+.+.++.+++++.+..|..+..+|...+
T Consensus 13 kK~K~~gLT~eE~~Eq~~LR~eYl~~fR~~~~~~L~~i~ 51 (76)
T PRK01631 13 KKEKATGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTK 51 (76)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 344445555566667788889999999999999887654
No 55
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=22.39 E-value=2e+02 Score=23.42 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029753 132 SEERARLEELKRQRELAAAVKEEE 155 (188)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~ 155 (188)
.+....|+.++++|++..++++.+
T Consensus 149 ~~Ll~ELekIKkER~ee~~~~e~~ 172 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKARKEEE 172 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667666666555533
No 56
>PRK12897 methionine aminopeptidase; Reviewed
Probab=22.00 E-value=4.1e+02 Score=21.10 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=34.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC---------chHHHHHHHccCcCCCEE
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVA 86 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~---------~i~g~e~aL~gmk~Ge~~ 86 (188)
++.+.||.|.+++-+.+ +|-..+. ..+|.+|... ...+.+.++..+++|-++
T Consensus 83 ~~l~~Gd~V~iD~g~~~--~GY~sD~------tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~ 143 (248)
T PRK12897 83 VPLTEGDIVTIDMVVNL--NGGLSDS------AWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRV 143 (248)
T ss_pred cccCCCCEEEEEeeEEE--CCEEEEE------EEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 45677899999998877 6654443 3566667432 234566677888888543
No 57
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=1.6e+02 Score=19.53 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029753 141 LKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK 178 (188)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (188)
.++.......+++.+..+++++....+..++.+|...+
T Consensus 15 k~K~~gLTeeEk~eQ~~LR~eYl~~fr~~vk~~l~~ik 52 (77)
T COG4224 15 KKKEEGLTEEEKKEQAKLRREYLESFRGQVKNQLENIK 52 (77)
T ss_pred HhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Confidence 33444444555666777888999999999999887654
No 58
>PRK04980 hypothetical protein; Provisional
Probab=21.59 E-value=2.8e+02 Score=19.47 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=21.5
Q ss_pred CcEEEEEEEeeecCCCCCCCCChHHHHHHH
Q 029753 109 ATLIFEVELVACRPRKGSSLGSVSEERARL 138 (188)
Q Consensus 109 ~~l~f~Vel~~v~~~~~~~~~~~~~~~~~~ 138 (188)
...+..|++.+|.+..-.++.+..+..+++
T Consensus 46 g~~~c~ieI~sV~~i~f~eLte~hA~qEg~ 75 (102)
T PRK04980 46 DRYFCTIEVLSVSPVTFDELNEKHAEQENM 75 (102)
T ss_pred CcEEEEEEEEEEEEEehhhCCHHHHHHhCC
Confidence 345678999999988766666666655554
No 59
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=20.86 E-value=1.2e+02 Score=20.29 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.1
Q ss_pred eCCCCchHHHHHHHccCcCCCEEEEE
Q 029753 64 LGKGSVIRAWDIALRSMKVGEVAKLT 89 (188)
Q Consensus 64 lG~~~~i~g~e~aL~gmk~Ge~~~v~ 89 (188)
+..+.+.+.|..+|..|++|+.....
T Consensus 57 ~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 57 ISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp EETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred ccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 45558999999999999999988654
No 60
>PRK01546 hypothetical protein; Provisional
Probab=20.77 E-value=1.6e+02 Score=19.69 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029753 141 LKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK 178 (188)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (188)
..+.+.+...+.+.++.+++++....|..++.+|...+
T Consensus 16 K~K~~gLT~eEk~Eq~~LR~eYl~~fR~~~~~~L~~i~ 53 (79)
T PRK01546 16 KAKAEGLTEEEQRERQSLREQYLKGFRQNMLNELKGIK 53 (79)
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 33444555666677788889999999999999887643
No 61
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=20.45 E-value=1e+02 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.2
Q ss_pred hHHHHHHHccCcCCCEEEEEEcC
Q 029753 70 IRAWDIALRSMKVGEVAKLTCKP 92 (188)
Q Consensus 70 i~g~e~aL~gmk~Ge~~~v~vp~ 92 (188)
..-+-.+|.|.++||.+.+.+|.
T Consensus 123 ~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 123 ESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred CChHHHHHhCCCCCCEEEEEcCC
Confidence 34577999999999999998763
No 62
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=20.42 E-value=4.2e+02 Score=20.64 Aligned_cols=52 Identities=21% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC---------chHHHHHHHccCcCCCE
Q 029753 26 LSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (188)
Q Consensus 26 ~~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~---------~i~g~e~aL~gmk~Ge~ 85 (188)
.++.+.||.|.+++-+.. +|-.-+ -..+|.+|... ...+++.++..|++|-.
T Consensus 73 ~~~l~~Gd~v~id~g~~~--~GY~ad------~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~ 133 (238)
T cd01086 73 DRVLKDGDIVNIDVGVEL--DGYHGD------SARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNR 133 (238)
T ss_pred CcccCCCCEEEEEEEEEE--CCEEEE------EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345667899999999877 664333 33566677431 23456667777777753
No 63
>PRK12896 methionine aminopeptidase; Reviewed
Probab=20.09 E-value=3.9e+02 Score=21.11 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEeCCCC---------chHHHHHHHccCcCCCE
Q 029753 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (188)
Q Consensus 27 ~p~~~Gd~V~v~y~~~~~~dg~~~~st~~~~~~~~~~lG~~~---------~i~g~e~aL~gmk~Ge~ 85 (188)
++.+.||.|.+++-..+ +|-.-+ ...+|.+|... ...+++.++..|++|-.
T Consensus 89 ~~l~~Gd~v~iD~g~~~--~gY~aD------~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 148 (255)
T PRK12896 89 RVIKDGDLVNIDVSAYL--DGYHGD------TGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRP 148 (255)
T ss_pred ccCCCCCEEEEEEeEEE--CcEEEe------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566899999998877 664333 23566677421 23566777778888743
Done!