BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029754
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X1O|A Chain A, Crystal Structure Of Project Id Tt0268 From Thermus
Thermophilus Hb8
pdb|1X1O|B Chain B, Crystal Structure Of Project Id Tt0268 From Thermus
Thermophilus Hb8
pdb|1X1O|C Chain C, Crystal Structure Of Project Id Tt0268 From Thermus
Thermophilus Hb8
Length = 286
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 58 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 117
L ED G +GD+T + +P D+E EA LAKE G++AG+ +AE +F DP + +
Sbjct: 22 LREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAE 80
Query: 118 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD--LAHPATILETRK 175
G V +G + +V G I+ ER+ LN +QR+SGIATLTRA + A IL+TRK
Sbjct: 81 GARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVEALAGTKAQILDTRK 140
Query: 176 TAPTLRLLDKWAV 188
T P LR L+K+AV
Sbjct: 141 TTPGLRALEKYAV 153
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 53 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVE 112
++ AL ED GD+GD+T +I ++ +V +E+ ++ GI + E +F+ +K E
Sbjct: 29 IIHNALKEDLGDKGDIT-TNSILINEKVNFAINTRENLVVCGIPILEEVFNMNKEHVKYE 87
Query: 113 WSLKDGDHVHKGLQFGKVSGRAHSIVI--AERVVLNFMQRMSGIATLTRAMADLAH--PA 168
KDGD K VSG A +I + ERV+LNF+Q SGIA++TR D
Sbjct: 88 IHKKDGDITGKNSTL--VSGEALAIYLLPIERVILNFIQHASGIASITRQFVDEVSGTKV 145
Query: 169 TILETRKTAPTLRLLDKWAV 188
I TRKT P LR+LDK++V
Sbjct: 146 KIRSTRKTTPGLRMLDKYSV 165
>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Burkholderi Pseudomallei
pdb|3GNN|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Burkholderi Pseudomallei
Length = 298
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Query: 57 ALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 116
ALAED G GD T +P A + +ED ++ G+ + + VDPS++V+W +
Sbjct: 36 ALAEDVGS-GDQTGR-LVPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHR 93
Query: 117 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP--ATILETR 174
+GD + ++ G A +++ AER LNF+Q +SG+A+ TR D A IL+TR
Sbjct: 94 EGDRMSADSTVCELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTR 153
Query: 175 KTAPTLRLLDKWAV 188
KT P LRL K+AV
Sbjct: 154 KTLPGLRLAQKYAV 167
>pdb|3TQV|A Chain A, Structure Of The Nicotinate-Nucleotide Pyrophosphorylase
From Francisella Tularensis.
pdb|3TQV|B Chain B, Structure Of The Nicotinate-Nucleotide Pyrophosphorylase
From Francisella Tularensis
Length = 287
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 5/138 (3%)
Query: 53 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVE 112
+V+ +LAED GD+T A + D++ A + +E+ I+ G A + +++D ++++
Sbjct: 22 LVRESLAEDIA-TGDIT--AQLAEDIDTTAFCITREEXILCGQDFANEVINQLDKNIQIT 78
Query: 113 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL--AHPATI 170
W D V + ++ G SI+ AER +LNF+Q +SG AT+T + L + +
Sbjct: 79 WLYSDAQKVPANARIFELKGNVRSILTAERTILNFIQXLSGTATVTNKLVKLISQYKTKL 138
Query: 171 LETRKTAPTLRLLDKWAV 188
L+TRKT P RL K+AV
Sbjct: 139 LDTRKTIPGFRLAQKYAV 156
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 12/118 (10%)
Query: 81 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG------LQFGKVSGRA 134
EA+ K+DG++ G+ A+ +F++ + L+VEW K+G + + K++G A
Sbjct: 42 EANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDSGKIVVAKITGPA 99
Query: 135 HSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 188
+I++AER LN + R SGIAT + + LA + TI TRKT P LR L+K+++
Sbjct: 100 KNILLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSM 157
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 12/118 (10%)
Query: 81 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG------LQFGKVSGRA 134
EA+ K+DG++ G+ A+ +F++ + L+VEW K+G + + K++G A
Sbjct: 41 EANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDSGKIVVAKITGPA 98
Query: 135 HSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 188
+I++AER LN + R SGIAT + + LA + TI TRKT P LR L+K+++
Sbjct: 99 KNILLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSM 156
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
pdb|1QAP|B Chain B, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
Length = 296
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 49 DLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 105
D+ V AL ED G D G+ +P D + A + +EDG+ G E +F ++
Sbjct: 21 DIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQL 80
Query: 106 -DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL 164
+++ W + DGD +H ++ G A ++ ER LNF+Q +SG+A+ R L
Sbjct: 81 AGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVGL 140
Query: 165 --AHPATILETRKTAPTLRLLDKWAV 188
+L+TRKT P LR K+AV
Sbjct: 141 LAGTQTQLLDTRKTLPGLRTALKYAV 166
>pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|B Chain B, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|C Chain C, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|D Chain D, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|E Chain E, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|F Chain F, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPN|A Chain A, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|B Chain B, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|C Chain C, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|D Chain D, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|E Chain E, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|F Chain F, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|B Chain B, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|C Chain C, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|D Chain D, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|E Chain E, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|F Chain F, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPQ|A Chain A, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|B Chain B, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|C Chain C, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|D Chain D, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|E Chain E, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|F Chain F, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
Length = 284
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 67 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG 124
DVT +AT+P A + +E G++AG+ +A + +EV +V ++DG V G
Sbjct: 27 DVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG 86
Query: 125 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRL 182
+ + ++ AER +LN + +SGIAT T A D A I +TRKT P LR
Sbjct: 87 EALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRA 146
Query: 183 LDKWAV 188
L K+AV
Sbjct: 147 LQKYAV 152
>pdb|3PAJ|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3PAJ|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 320
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 41 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEM 100
+LP+ T + +K L D+T + IP D A + +E G+ G A+
Sbjct: 41 QLPADITRSVIDTLKEDLGGTLDPAADITA-SLIPADRISTATIITREAGVFCGQLWADE 99
Query: 101 IFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT-R 159
+F ++ + +EW ++DGD + ++G A ++ ER +NF+Q +SG AT T R
Sbjct: 100 VFKQLGGQVSIEWHVQDGDTLTPNQTLCTLTGPARILLTGERNAMNFIQTLSGCATATAR 159
Query: 160 AMADL-AHPATILETRKTAPTLRLLDKWAV 188
+ +L +L+TRKT P LR K+AV
Sbjct: 160 YVQELKGTQCRLLDTRKTIPGLRSALKYAV 189
>pdb|1O4U|A Chain A, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
pdb|1O4U|B Chain B, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
Length = 285
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 71 MATIPL-DMEVEAHFLAKEDGIIA-GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 128
+A+ PL + AH L K + ++A GI ++ M ++ L +++++DG+++ G
Sbjct: 33 LASFPLRNTTAGAHLLLKTENVVASGIEVSRMFLEKM--GLLSKFNVEDGEYLEGTGVIG 90
Query: 129 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 188
++ G + +++AER +LN + M +AT TR A+ A I TRK P L +L K AV
Sbjct: 91 EIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 150
>pdb|2B7N|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7N|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7N|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
Length = 273
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAG----IALAEMIFHE 104
+++ ++ AL ED G GD+ + D + A AK++G+ +G + L EM E
Sbjct: 2 EIRTFLERALKEDLG-HGDL-FERVLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGIE 59
Query: 105 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL 164
++K + K D + + + G ++ ER +LN +Q SGIATLT +
Sbjct: 60 CVQTIKDKERFKPKDALME------IRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEA 113
Query: 165 --AHPATILETRKTAPTLRLLDKWAV 188
+H +L+TRKT P LR+ +K++V
Sbjct: 114 LNSHKVRLLDTRKTRPLLRIFEKYSV 139
>pdb|2JBM|A Chain A, Qprtase Structure From Human
pdb|2JBM|B Chain B, Qprtase Structure From Human
pdb|2JBM|C Chain C, Qprtase Structure From Human
pdb|2JBM|D Chain D, Qprtase Structure From Human
pdb|2JBM|E Chain E, Qprtase Structure From Human
pdb|2JBM|F Chain F, Qprtase Structure From Human
pdb|2JBM|G Chain G, Qprtase Structure From Human
pdb|2JBM|H Chain H, Qprtase Structure From Human
pdb|2JBM|I Chain I, Qprtase Structure From Human
pdb|2JBM|J Chain J, Qprtase Structure From Human
pdb|2JBM|K Chain K, Qprtase Structure From Human
pdb|2JBM|L Chain L, Qprtase Structure From Human
Length = 299
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 81 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 140
+A AK G++AG + IF +++ +V W L +G + + +V G AH +++
Sbjct: 45 QAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAEVRGPAHCLLLG 102
Query: 141 ERVVLNFMQRMSGIATLTRAMADLAHPAT----ILETRKTAPTLRLLDKWAV 188
ERV LN + R SGIA+ A + A A + TRKT P RL++K+ +
Sbjct: 103 ERVALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFRLVEKYGL 154
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|B Chain B, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|C Chain C, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|D Chain D, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|E Chain E, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|F Chain F, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
Length = 305
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 81 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 140
+A AK G++AG + IF +++ +V W L +G + + +V G AH +++
Sbjct: 43 QAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAEVRGPAHCLLLG 100
Query: 141 ERVVLNFMQRMSGIATLTRAMADLAHPAT----ILETRKTAPTLRLLDKWAV 188
ERV LN + R SGIA+ A + A A + TRKT P RL++K+ +
Sbjct: 101 ERVALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFRLVEKYGL 152
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 48 YDLKGVVKLALAEDAGDR----GDVTCM--ATIPLDMEVEAHFLAKEDGIIAGIALAEMI 101
YD KG V+++ A +A D G V C+ +PL EV A DG A LA+ +
Sbjct: 183 YDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNV 242
Query: 102 FHE 104
H
Sbjct: 243 HHN 245
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia
Thailandensis
Length = 419
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 48 YDLKGVVKLALAEDA----GDRGDVTCM--ATIPLDMEVEAHFLAKEDGIIAGIALAEMI 101
YD KG V++A A++A G G V C+ +PL EV A +G A LA+
Sbjct: 183 YDGKGQVRVATAQEARDAYGSLGGVPCVLEKRLPLKYEVSALIARGANGASAVFPLAQNT 242
Query: 102 FH 103
H
Sbjct: 243 HH 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,467,368
Number of Sequences: 62578
Number of extensions: 208355
Number of successful extensions: 493
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 19
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)