BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029755
         (188 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2KBC0|SYH_ELUMP Histidine--tRNA ligase OS=Elusimicrobium minutum (strain Pei191)
           GN=hisS PE=3 SV=1
          Length = 410

 Score = 32.3 bits (72), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 95  PLVGEEMDCQGSVGLYIDTEDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSSL 154
           P VG  M  + ++    +T+DNK N          F+ +LD+  N    E++++L  + +
Sbjct: 293 PAVGFAMGVERTIAARGETKDNKQNKI--------FVVSLDKNCNAKAFEIMSLLRSAGV 344

Query: 155 ILDNKEKPKNVKVQ 168
           I D     KN+K Q
Sbjct: 345 ICDGGLFDKNLKAQ 358


>sp|A8XDJ2|OTUBL_CAEBR Ubiquitin thioesterase otubain-like OS=Caenorhabditis briggsae
           GN=otub-1 PE=3 SV=1
          Length = 288

 Score = 32.0 bits (71), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 83  QVLQFSDNSQASPLVGEEMDCQGSVGLY 110
           Q+ +  D  +ASPLVGE+M C   V LY
Sbjct: 29  QMKRIEDEQKASPLVGEKMPCATLVSLY 56


>sp|O59732|CHR1_SCHPO Chitin synthase regulatory factor 1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=chr1 PE=1 SV=1
          Length = 456

 Score = 30.8 bits (68), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 46  DPSGLVRIVSPKKRVQ-------EEKDEDKDFDPNAPKP-GDNGSQVLQFSDNSQAS 94
           +P G+ R VS  KR+          K ED  FDP AP     N S+VL+ ++ + AS
Sbjct: 171 EPHGIHRHVSRAKRLLSKFYSKFHHKKEDSSFDPLAPLVFAPNTSRVLRVTNEANAS 227


>sp|B4P3A0|LPHN_DROYA Latrophilin Cirl OS=Drosophila yakuba GN=Cirl PE=3 SV=1
          Length = 1707

 Score = 30.4 bits (67), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 58  KRVQEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNK 117
           KR+ +   ++ D DP++  P  NG   L   ++S   P V         +  +  T    
Sbjct: 369 KRMPDSGYDEYDDDPSSTTPAPNGGDCLH--NSSSCEPPVSMAHKVNQRLRNFEPTWHPA 426

Query: 118 TNSWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNK 159
           T    +  S   +L NL+ ++N  +S L++I N  S +  +K
Sbjct: 427 TPDLTQCRSL--WLNNLEMRVNQRDSSLISIANDMSEVTSSK 466


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.131    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,228,726
Number of Sequences: 539616
Number of extensions: 2937592
Number of successful extensions: 8331
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 8312
Number of HSP's gapped (non-prelim): 76
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)