BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029759
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 73/90 (81%)
Query: 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R SGM+KN F+E+V
Sbjct: 16 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
S+ F + D IIVGCQSG RS+ A TDLL+A
Sbjct: 76 SSHFGQSDNIIVGCQSGGRSIKATTDLLHA 105
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 39/150 (26%)
Query: 26 HGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ 85
HG + G +++ D+ + IG+ L++ + +L G+ V T + ++ +
Sbjct: 309 HGGHIEGTINIPYDKNFINQIGWY----LNYDQEINLIGDYHLVSKATHTLQLIGYDDI- 363
Query: 86 AGHRY----------------------LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
AG++ LDVR E++ GH + A++VP+ +
Sbjct: 364 AGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLL------- 416
Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMA 153
E F K+D I V CQSG RS +A
Sbjct: 417 -----ETDLPFNKNDVIYVHCQSGIRSSIA 441
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
D+R+ E + GH G IN+PY + + L + +E++
Sbjct: 300 FDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEIN 340
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 90 YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRF-RKHDEIIVGCQSG 147
++DVR PE++ H GAIN+P LK V+E ++T K+D + V C +G
Sbjct: 4 WIDVRVPEQYQQEHVQGAINIP------------LKEVKERIATAVPDKNDTVKVYCNAG 51
Query: 148 KRSMMAATDLLNAVSTH 164
++S A L TH
Sbjct: 52 RQSGQAKEILSEMGYTH 68
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGKR 149
+DVR P E+S H +INVPY + L+F +++ + E+I C SGKR
Sbjct: 44 VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKR 103
Query: 150 SMMA 153
A
Sbjct: 104 GGEA 107
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 37.0 bits (84), Expect = 0.007, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGCQSG 147
LDVR P E G GA+N+P V+E+ R K EII+ CQ G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFCQVG 534
Query: 148 KRSMMAATDLLN 159
R +A L+N
Sbjct: 535 LRGNVAYRQLVN 546
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 33.5 bits (75), Expect = 0.063, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK---HDE 139
+++ G +DVR P E G G+IN+P ++E+ R + +
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIP---------------LDELRDRLEEVPVDKD 543
Query: 140 IIVGCQSGKRSMMAATDL 157
I + CQ G R +AA L
Sbjct: 544 IYITCQLGXRGYVAARXL 561
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
LDVR P E G GA+N+P V+E+ R K EII+ Q G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHELPKDKEIIIFSQVG 534
Query: 148 KRSMMAATDLLN 159
R +A L+N
Sbjct: 535 LRGNVAYRQLVN 546
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 43/119 (36%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 182 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 239
Query: 135 -----RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS 188
E I C+ G+R S+H TWF+ +LL + +K+
Sbjct: 240 ADAGLDNSKETIAYCRIGER------------SSH--------TWFVLRELLGHQNVKN 278
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 43/119 (36%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 218
Query: 135 -----RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS 188
E I C+ G+R S+H TWF+ +LL + +K+
Sbjct: 219 ADAGLDNSKETIAYCRIGER------------SSH--------TWFVLRELLGHQNVKN 257
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGCQSG 147
LDVR P E G GA+N+P V+E+ R K EII+ Q G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFSQVG 534
Query: 148 KRSMMAATDLLN 159
R +A L+N
Sbjct: 535 LRGNVAYRQLVN 546
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
P V L Q G LDVR +E++ GH A ++P ++K + +V
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---- 425
Query: 136 KHDEIIVGCQSGKRSMMAATDLLNA 160
+ + V C++G RS +AA+ LL A
Sbjct: 426 RDGSVCVYCRTGGRSAIAAS-LLRA 449
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 66 LEAVGVPTSV---PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
L +G P V P RV + G LDVR + F+ H G++N+P+
Sbjct: 264 LAELGAPERVDLPPERV--RAWREGGVVLDVRPADAFAKRHLAGSLNIPW 311
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVRTPEE+ AGH G+ + P
Sbjct: 286 LDVRTPEEYEAGHLPGSRSTP 306
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 33/114 (28%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 218
Query: 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS 188
G + K ++ A + S+H TWF+ +LL + +K+
Sbjct: 219 AD-----AGLDNSKETI--AYXRIGERSSH--------TWFVLRELLGHQNVKN 257
>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 156 DLLNAVSTHANYPSKPLTWFLSNQL 180
+LLNA+ ANYP +T F +N+L
Sbjct: 151 NLLNALYVAANYPINEVTLFFNNRL 175
>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 156 DLLNAVSTHANYPSKPLTWFLSNQL 180
+LLNA+ ANYP +T F +N+L
Sbjct: 151 NLLNALYVAANYPINEVTLFFNNRL 175
>pdb|3NTX|A Chain A, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
pdb|3NTX|B Chain B, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
Length = 341
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 155 TDLLNAVSTHANYPSKPLTWFLSNQLL 181
T+LLNA+ AN+P ++ F +NQL
Sbjct: 133 TNLLNALYLAANHPVNEVSLFFNNQLF 159
>pdb|2OCD|A Chain A, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|B Chain B, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|C Chain C, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|D Chain D, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
Length = 337
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 156 DLLNAVSTHANYPSKPLTWFLSNQL 180
+LLNA+ ANYP +T F +N+L
Sbjct: 131 NLLNALHVAANYPINEVTLFFNNRL 155
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINV 110
+ V AH+ LQ L D+R P+ F+ GHA A ++
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHL 43
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINV 110
+ V AH+ LQ L D+R P+ F+ GHA A ++
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHL 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,781,852
Number of Sequences: 62578
Number of extensions: 171238
Number of successful extensions: 436
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 24
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)