Query 029759
Match_columns 188
No_of_seqs 231 out of 1779
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2897 SseA Rhodanese-related 100.0 1E-27 2.2E-32 194.6 13.5 166 20-185 68-284 (285)
2 PLN02723 3-mercaptopyruvate su 99.9 2E-25 4.3E-30 185.7 14.1 166 20-185 81-319 (320)
3 PLN02160 thiosulfate sulfurtra 99.9 7.6E-25 1.6E-29 161.2 12.9 113 74-186 16-131 (136)
4 KOG1530 Rhodanese-related sulf 99.9 1E-24 2.3E-29 155.1 10.5 113 70-182 20-135 (136)
5 PRK11493 sseA 3-mercaptopyruva 99.9 3.2E-24 6.9E-29 175.6 13.2 164 21-184 66-280 (281)
6 PRK09629 bifunctional thiosulf 99.9 1.4E-23 3E-28 187.0 14.5 164 22-185 61-273 (610)
7 cd01533 4RHOD_Repeat_2 Member 99.9 3.9E-23 8.4E-28 146.3 11.6 95 72-178 9-109 (109)
8 cd01527 RHOD_YgaP Member of th 99.9 3.5E-23 7.6E-28 143.9 10.3 96 74-181 3-99 (99)
9 PRK00162 glpE thiosulfate sulf 99.9 7.9E-23 1.7E-27 144.5 11.7 101 72-184 4-106 (108)
10 cd01518 RHOD_YceA Member of th 99.9 7.5E-23 1.6E-27 142.9 8.1 97 74-176 3-101 (101)
11 cd01523 RHOD_Lact_B Member of 99.9 3.5E-22 7.6E-27 139.2 10.0 96 75-175 1-99 (100)
12 cd01524 RHOD_Pyr_redox Member 99.9 8.8E-22 1.9E-26 134.7 10.8 88 75-175 1-89 (90)
13 cd01534 4RHOD_Repeat_3 Member 99.9 1.2E-21 2.5E-26 135.4 10.2 88 75-175 1-94 (95)
14 cd01519 RHOD_HSP67B2 Member of 99.9 7.9E-22 1.7E-26 138.5 9.3 99 76-175 2-105 (106)
15 cd01521 RHOD_PspE2 Member of t 99.9 1.8E-21 3.8E-26 138.1 11.0 98 71-181 6-110 (110)
16 cd01528 RHOD_2 Member of the R 99.9 1.9E-21 4E-26 135.8 10.5 91 75-177 2-99 (101)
17 cd01520 RHOD_YbbB Member of th 99.9 2.2E-21 4.7E-26 141.3 10.3 101 75-176 1-126 (128)
18 cd01444 GlpE_ST GlpE sulfurtra 99.9 3.3E-21 7.2E-26 132.9 10.6 89 75-175 2-95 (96)
19 cd01449 TST_Repeat_2 Thiosulfa 99.9 2.3E-21 5.1E-26 138.7 9.9 101 75-175 1-117 (118)
20 cd01448 TST_Repeat_1 Thiosulfa 99.9 3.8E-21 8.3E-26 138.5 11.0 104 75-178 2-122 (122)
21 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 9E-21 1.9E-25 143.4 13.2 106 73-181 36-162 (162)
22 cd01526 RHOD_ThiF Member of th 99.9 3.4E-21 7.3E-26 139.1 10.1 103 73-180 8-117 (122)
23 cd01447 Polysulfide_ST Polysul 99.9 3.4E-21 7.3E-26 134.4 9.5 100 75-178 1-103 (103)
24 cd01535 4RHOD_Repeat_4 Member 99.8 1.3E-20 2.9E-25 140.0 10.9 93 80-184 2-97 (145)
25 cd01522 RHOD_1 Member of the R 99.8 1.2E-20 2.5E-25 135.5 9.9 101 75-177 1-105 (117)
26 cd01525 RHOD_Kc Member of the 99.8 1.1E-20 2.4E-25 132.5 8.8 99 75-175 1-104 (105)
27 cd01530 Cdc25 Cdc25 phosphatas 99.8 2.6E-20 5.6E-25 134.5 9.9 91 74-175 3-120 (121)
28 smart00450 RHOD Rhodanese Homo 99.8 3.8E-20 8.3E-25 127.1 10.1 94 87-180 4-100 (100)
29 PF00581 Rhodanese: Rhodanese- 99.8 4.2E-20 9.2E-25 130.2 9.8 101 76-176 1-112 (113)
30 cd01445 TST_Repeats Thiosulfat 99.8 6.4E-20 1.4E-24 135.3 10.9 101 75-175 1-137 (138)
31 cd01529 4RHOD_Repeats Member o 99.8 4.2E-20 9E-25 127.8 9.0 84 86-175 11-95 (96)
32 PRK08762 molybdopterin biosynt 99.8 7.3E-20 1.6E-24 155.4 12.1 101 74-186 4-107 (376)
33 PRK11493 sseA 3-mercaptopyruva 99.8 8.7E-20 1.9E-24 149.4 11.7 113 73-185 5-137 (281)
34 PRK09629 bifunctional thiosulf 99.8 2.9E-19 6.2E-24 159.5 12.4 113 73-185 9-131 (610)
35 cd01532 4RHOD_Repeat_1 Member 99.8 1.7E-19 3.8E-24 123.9 8.5 78 86-175 9-91 (92)
36 TIGR02981 phageshock_pspE phag 99.8 4.2E-19 9.2E-24 124.1 9.7 80 86-177 17-98 (101)
37 PRK10287 thiosulfate:cyanide s 99.8 3.9E-19 8.5E-24 124.9 9.5 78 87-176 20-99 (104)
38 PLN02723 3-mercaptopyruvate su 99.8 5.8E-19 1.2E-23 147.0 11.5 112 74-185 23-153 (320)
39 cd00158 RHOD Rhodanese Homolog 99.8 5.2E-19 1.1E-23 119.5 8.5 84 81-175 3-89 (89)
40 PRK01415 hypothetical protein; 99.8 1E-18 2.2E-23 139.6 9.8 99 73-177 112-212 (247)
41 COG0607 PspE Rhodanese-related 99.8 1.2E-18 2.7E-23 122.6 8.9 87 86-184 19-109 (110)
42 PRK05320 rhodanese superfamily 99.8 2.3E-18 5E-23 139.0 10.4 100 72-177 109-216 (257)
43 PRK07411 hypothetical protein; 99.8 5.8E-18 1.3E-22 144.3 11.2 103 72-181 281-386 (390)
44 PRK07878 molybdopterin biosynt 99.8 6E-18 1.3E-22 144.4 10.6 97 73-180 287-387 (392)
45 cd01531 Acr2p Eukaryotic arsen 99.7 5.5E-18 1.2E-22 120.6 8.4 95 74-177 3-112 (113)
46 PRK00142 putative rhodanese-re 99.7 9.4E-18 2E-22 139.1 10.3 99 73-177 112-212 (314)
47 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 1.5E-17 3.3E-22 118.4 7.6 93 74-175 3-112 (113)
48 PRK11784 tRNA 2-selenouridine 99.7 3.1E-17 6.7E-22 137.4 9.5 108 76-183 4-135 (345)
49 KOG1529 Mercaptopyruvate sulfu 99.7 5.8E-17 1.3E-21 129.8 10.2 164 12-176 56-275 (286)
50 COG2897 SseA Rhodanese-related 99.7 1.8E-16 3.8E-21 129.0 11.5 115 72-186 10-141 (285)
51 PRK05597 molybdopterin biosynt 99.7 1.2E-16 2.6E-21 134.7 10.3 90 74-176 262-354 (355)
52 TIGR03167 tRNA_sel_U_synt tRNA 99.7 1E-16 2.2E-21 132.6 9.1 96 88-183 3-121 (311)
53 cd01446 DSP_MapKP N-terminal r 99.6 1.4E-15 3E-20 111.1 9.5 101 75-177 2-127 (132)
54 PRK05600 thiamine biosynthesis 99.6 2.9E-15 6.4E-20 126.8 9.0 86 74-172 272-369 (370)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.5 1.5E-13 3.2E-18 120.3 9.7 79 78-168 398-481 (482)
56 COG1054 Predicted sulfurtransf 99.3 1E-12 2.3E-17 106.1 5.3 97 73-177 113-213 (308)
57 KOG2017 Molybdopterin synthase 99.2 2.4E-11 5.3E-16 99.9 5.9 98 74-178 318-420 (427)
58 KOG1529 Mercaptopyruvate sulfu 99.1 5.3E-10 1.1E-14 90.1 10.1 113 74-186 6-139 (286)
59 KOG3772 M-phase inducer phosph 99.1 2.2E-10 4.9E-15 93.9 7.0 93 74-177 157-276 (325)
60 COG5105 MIH1 Mitotic inducer, 98.2 5E-06 1.1E-10 68.2 6.7 92 74-176 243-357 (427)
61 PF04273 DUF442: Putative phos 97.2 0.0031 6.6E-08 44.6 8.4 76 74-156 14-105 (110)
62 COG2603 Predicted ATPase [Gene 97.2 0.00054 1.2E-08 55.9 4.8 98 77-174 5-126 (334)
63 TIGR01244 conserved hypothetic 97.0 0.0064 1.4E-07 44.4 8.5 85 74-163 14-113 (135)
64 PRK00142 putative rhodanese-re 96.5 0.00038 8.2E-09 58.1 -1.7 79 75-165 16-104 (314)
65 PF13350 Y_phosphatase3: Tyros 95.5 0.19 4.1E-06 37.7 9.5 100 64-163 19-152 (164)
66 KOG1093 Predicted protein kina 95.0 0.012 2.6E-07 52.3 1.6 89 73-173 622-717 (725)
67 PLN02727 NAD kinase 91.3 1.1 2.4E-05 42.5 8.2 71 74-149 268-353 (986)
68 COG3453 Uncharacterized protei 91.3 1.7 3.6E-05 31.2 7.3 79 74-158 15-108 (130)
69 KOG3636 Uncharacterized conser 90.9 0.59 1.3E-05 40.8 5.6 25 88-112 327-351 (669)
70 cd00127 DSPc Dual specificity 90.1 1.4 3E-05 31.4 6.4 76 85-163 25-110 (139)
71 TIGR03167 tRNA_sel_U_synt tRNA 89.8 0.79 1.7E-05 38.3 5.4 65 74-147 137-206 (311)
72 smart00195 DSPc Dual specifici 88.8 1.8 3.9E-05 31.0 6.2 77 83-163 22-107 (138)
73 KOG1717 Dual specificity phosp 87.2 1.3 2.9E-05 36.1 4.9 100 74-177 5-124 (343)
74 PF00782 DSPc: Dual specificit 70.8 10 0.00022 26.7 4.6 78 86-163 17-102 (133)
75 PTZ00393 protein tyrosine phos 67.2 20 0.00043 28.9 5.9 79 80-163 109-198 (241)
76 TIGR00853 pts-lac PTS system, 66.4 9.3 0.0002 26.0 3.4 27 137-163 3-33 (95)
77 PF03853 YjeF_N: YjeF-related 64.9 22 0.00048 26.7 5.6 31 135-165 23-56 (169)
78 COG0062 Uncharacterized conser 64.1 29 0.00062 27.2 6.2 33 137-169 49-85 (203)
79 PF05706 CDKN3: Cyclin-depende 62.3 67 0.0015 24.4 8.0 28 134-161 130-159 (168)
80 PTZ00242 protein tyrosine phos 61.5 66 0.0014 24.1 8.5 77 80-161 33-124 (166)
81 PF09992 DUF2233: Predicted pe 61.4 8.8 0.00019 28.6 2.8 40 135-174 98-143 (170)
82 PRK09590 celB cellobiose phosp 60.1 13 0.00028 25.9 3.2 26 138-163 2-31 (104)
83 COG1891 Uncharacterized protei 58.1 14 0.00031 28.4 3.4 34 74-112 7-40 (235)
84 PF02302 PTS_IIB: PTS system, 57.7 14 0.0003 24.2 3.0 27 139-165 1-32 (90)
85 PF03162 Y_phosphatase2: Tyros 57.0 24 0.00052 26.5 4.5 76 88-163 34-119 (164)
86 cd05564 PTS_IIB_chitobiose_lic 56.5 15 0.00032 24.9 3.1 25 139-163 1-29 (96)
87 PLN03049 pyridoxine (pyridoxam 56.2 34 0.00075 30.2 6.0 32 138-169 60-95 (462)
88 PRK10310 PTS system galactitol 56.1 17 0.00037 24.5 3.3 25 139-163 4-33 (94)
89 PRK12898 secA preprotein trans 55.8 54 0.0012 30.5 7.3 36 136-171 472-507 (656)
90 COG2518 Pcm Protein-L-isoaspar 54.2 37 0.00081 26.7 5.3 52 126-177 60-136 (209)
91 cd05565 PTS_IIB_lactose PTS_II 54.2 15 0.00033 25.3 2.8 25 139-163 2-30 (99)
92 KOG0330 ATP-dependent RNA heli 53.4 19 0.00042 31.2 3.8 37 137-173 300-336 (476)
93 COG0162 TyrS Tyrosyl-tRNA synt 52.3 21 0.00045 31.0 3.9 51 124-178 21-81 (401)
94 cd01445 TST_Repeats Thiosulfat 50.5 13 0.00027 27.0 2.0 27 23-49 76-103 (138)
95 COG2519 GCD14 tRNA(1-methylade 50.4 44 0.00094 27.2 5.2 44 122-165 173-216 (256)
96 PRK08762 molybdopterin biosynt 50.4 49 0.0011 28.2 5.9 38 136-174 134-172 (376)
97 PRK12361 hypothetical protein; 50.3 52 0.0011 29.6 6.3 79 76-158 109-198 (547)
98 PRK10565 putative carbohydrate 50.0 36 0.00079 30.4 5.2 36 134-169 57-96 (508)
99 PF02590 SPOUT_MTase: Predicte 50.0 36 0.00078 25.4 4.4 46 129-174 59-110 (155)
100 cd05567 PTS_IIB_mannitol PTS_I 48.8 26 0.00056 23.1 3.2 25 139-163 2-31 (87)
101 PF01451 LMWPc: Low molecular 48.5 14 0.00031 26.3 2.1 35 140-174 1-41 (138)
102 PLN02918 pyridoxine (pyridoxam 48.4 53 0.0011 29.8 5.9 31 138-168 136-170 (544)
103 TIGR02804 ExbD_2 TonB system t 48.2 94 0.002 21.8 6.5 43 125-167 72-117 (121)
104 PLN03050 pyridoxine (pyridoxam 47.4 35 0.00075 27.5 4.3 31 138-168 61-95 (246)
105 PRK13802 bifunctional indole-3 46.8 69 0.0015 30.0 6.6 90 75-167 144-239 (695)
106 COG3414 SgaB Phosphotransferas 45.9 33 0.00073 23.3 3.4 26 138-163 2-32 (93)
107 PTZ00110 helicase; Provisional 45.2 50 0.0011 29.7 5.4 47 126-172 365-412 (545)
108 PF00218 IGPS: Indole-3-glycer 45.0 15 0.00032 29.8 1.8 90 75-167 142-237 (254)
109 PRK07688 thiamine/molybdopteri 44.6 16 0.00035 30.8 2.1 38 73-111 277-322 (339)
110 TIGR00614 recQ_fam ATP-depende 44.4 50 0.0011 29.0 5.2 37 136-172 225-261 (470)
111 PRK10499 PTS system N,N'-diace 44.2 28 0.00062 24.1 3.0 26 138-163 4-33 (106)
112 smart00226 LMWPc Low molecular 44.1 37 0.0008 24.2 3.7 35 140-174 1-37 (140)
113 cd00133 PTS_IIB PTS_IIB: subun 43.5 34 0.00075 21.3 3.2 21 139-159 1-22 (84)
114 TIGR00197 yjeF_nterm yjeF N-te 43.3 74 0.0016 24.7 5.5 30 134-163 42-74 (205)
115 cd01300 YtcJ_like YtcJ_like me 43.3 44 0.00094 29.2 4.7 32 132-163 107-138 (479)
116 TIGR03372 putres_am_tran putre 42.7 58 0.0013 28.5 5.3 41 135-175 131-177 (442)
117 COG2453 CDC14 Predicted protei 42.7 63 0.0014 24.4 4.9 45 119-163 83-134 (180)
118 COG0514 RecQ Superfamily II DN 41.4 34 0.00074 31.3 3.7 37 136-172 229-265 (590)
119 PF00289 CPSase_L_chain: Carba 40.9 37 0.00081 23.7 3.2 25 141-165 5-29 (110)
120 cd00079 HELICc Helicase superf 39.7 98 0.0021 20.9 5.3 36 136-171 27-62 (131)
121 PF07879 PHB_acc_N: PHB/PHA ac 39.6 31 0.00068 21.8 2.3 26 74-99 19-46 (64)
122 PLN02460 indole-3-glycerol-pho 39.4 1.8E+02 0.004 24.7 7.5 90 75-166 214-315 (338)
123 PLN03137 ATP-dependent DNA hel 38.1 64 0.0014 32.0 5.1 36 137-172 680-715 (1195)
124 KOG0572 Glutamine phosphoribos 38.0 48 0.001 28.7 3.8 32 136-167 355-389 (474)
125 COG4822 CbiK Cobalamin biosynt 37.8 89 0.0019 25.0 5.0 40 126-165 123-170 (265)
126 KOG0333 U5 snRNP-like RNA heli 37.7 72 0.0016 29.0 5.0 49 123-171 501-551 (673)
127 PF13344 Hydrolase_6: Haloacid 36.3 96 0.0021 21.0 4.6 28 136-163 29-57 (101)
128 cd05563 PTS_IIB_ascorbate PTS_ 36.3 51 0.0011 21.3 3.1 25 139-163 1-30 (86)
129 TIGR01587 cas3_core CRISPR-ass 36.0 77 0.0017 26.4 4.9 48 125-172 210-259 (358)
130 PRK11784 tRNA 2-selenouridine 35.8 1E+02 0.0022 26.2 5.5 32 75-106 152-187 (345)
131 COG0034 PurF Glutamine phospho 34.9 59 0.0013 28.7 4.0 32 136-167 347-381 (470)
132 PRK11057 ATP-dependent DNA hel 34.5 58 0.0013 29.7 4.1 37 136-172 235-271 (607)
133 PRK13104 secA preprotein trans 34.2 76 0.0016 30.6 4.9 40 135-174 442-481 (896)
134 PRK08117 4-aminobutyrate amino 33.7 98 0.0021 26.7 5.3 51 126-176 90-144 (433)
135 cd05566 PTS_IIB_galactitol PTS 33.5 57 0.0012 21.3 3.0 25 139-163 2-31 (89)
136 PRK06917 hypothetical protein; 33.1 1.2E+02 0.0026 26.5 5.8 43 134-176 87-138 (447)
137 TIGR00642 mmCoA_mut_beta methy 32.9 1.7E+02 0.0036 27.1 6.8 35 136-170 545-583 (619)
138 TIGR02689 ars_reduc_gluta arse 32.9 99 0.0022 21.8 4.4 23 139-161 2-25 (126)
139 cd05568 PTS_IIB_bgl_like PTS_I 32.7 66 0.0014 20.4 3.2 21 139-159 2-23 (85)
140 PF02879 PGM_PMM_II: Phosphogl 32.6 1.5E+02 0.0033 19.8 5.2 32 137-168 21-52 (104)
141 TIGR01389 recQ ATP-dependent D 32.1 1E+02 0.0022 27.9 5.3 36 137-172 224-259 (591)
142 PRK00103 rRNA large subunit me 32.1 1.1E+02 0.0023 22.9 4.6 48 128-175 58-111 (157)
143 PRK13957 indole-3-glycerol-pho 31.8 1.8E+02 0.004 23.5 6.1 87 75-165 135-227 (247)
144 PRK07678 aminotransferase; Val 31.6 97 0.0021 27.1 4.9 37 140-176 107-152 (451)
145 COG2185 Sbm Methylmalonyl-CoA 31.4 2.1E+02 0.0045 21.2 5.9 38 134-171 60-102 (143)
146 PRK11391 etp phosphotyrosine-p 31.1 1E+02 0.0023 22.4 4.3 36 138-174 3-40 (144)
147 PF12404 DUF3663: Peptidase ; 31.1 1.5E+02 0.0032 19.5 4.5 23 149-171 39-62 (77)
148 PRK06148 hypothetical protein; 31.0 1.1E+02 0.0023 30.0 5.5 43 134-176 676-721 (1013)
149 TIGR00640 acid_CoA_mut_C methy 30.8 2E+02 0.0044 20.6 5.9 25 76-100 18-46 (132)
150 COG4992 ArgD Ornithine/acetylo 30.6 86 0.0019 27.3 4.3 48 125-172 87-140 (404)
151 PRK11192 ATP-dependent RNA hel 30.4 89 0.0019 26.9 4.5 37 136-172 244-280 (434)
152 PRK05298 excinuclease ABC subu 30.3 81 0.0018 29.2 4.4 47 126-172 435-481 (652)
153 PRK10126 tyrosine phosphatase; 29.8 1E+02 0.0022 22.4 4.2 36 138-174 3-40 (147)
154 KOG0352 ATP-dependent DNA heli 29.8 45 0.00099 29.5 2.5 44 140-183 258-310 (641)
155 PLN02482 glutamate-1-semialdeh 29.3 1.3E+02 0.0028 26.6 5.4 37 139-175 156-195 (474)
156 KOG1390 Acetyl-CoA acetyltrans 28.9 50 0.0011 28.0 2.5 60 124-183 69-132 (396)
157 PRK11776 ATP-dependent RNA hel 28.4 84 0.0018 27.3 4.0 36 137-172 242-277 (460)
158 COG0134 TrpC Indole-3-glycerol 27.8 2.8E+02 0.0061 22.6 6.6 88 75-165 140-233 (254)
159 PRK06916 adenosylmethionine--8 27.8 1.4E+02 0.0031 26.2 5.3 43 134-176 112-163 (460)
160 cd00115 LMWPc Substituted upda 27.7 71 0.0015 22.8 2.9 35 139-173 2-39 (141)
161 PRK00615 glutamate-1-semialdeh 27.7 1.4E+02 0.003 26.1 5.2 37 139-175 111-150 (433)
162 PRK00278 trpC indole-3-glycero 27.6 2.5E+02 0.0054 22.6 6.4 89 76-167 145-239 (260)
163 TIGR00631 uvrb excinuclease AB 27.5 1.1E+02 0.0023 28.4 4.7 47 126-172 431-477 (655)
164 TIGR00963 secA preprotein tran 27.4 1.4E+02 0.003 28.3 5.3 36 135-170 403-438 (745)
165 COG0513 SrmB Superfamily II DN 27.2 1.4E+02 0.0031 26.7 5.3 35 138-172 274-308 (513)
166 PRK07481 hypothetical protein; 27.1 1.5E+02 0.0031 26.0 5.2 40 137-176 103-151 (449)
167 PRK04837 ATP-dependent RNA hel 26.6 1E+02 0.0022 26.4 4.2 35 137-171 255-289 (423)
168 PRK05639 4-aminobutyrate amino 26.6 1.5E+02 0.0033 26.0 5.3 38 139-176 114-154 (457)
169 PRK10590 ATP-dependent RNA hel 26.5 1E+02 0.0022 26.9 4.2 36 137-172 245-280 (456)
170 PRK13354 tyrosyl-tRNA syntheta 26.3 58 0.0013 28.3 2.6 42 136-177 30-81 (410)
171 PRK08593 4-aminobutyrate amino 26.2 1.5E+02 0.0032 25.9 5.2 37 139-175 104-143 (445)
172 PRK07482 hypothetical protein; 26.2 1.8E+02 0.0039 25.6 5.6 50 126-175 98-157 (461)
173 PRK05964 adenosylmethionine--8 26.1 2E+02 0.0043 24.7 5.9 37 139-175 103-148 (423)
174 PRK11070 ssDNA exonuclease Rec 26.1 1.9E+02 0.0041 26.5 5.9 49 117-168 110-158 (575)
175 PRK04914 ATP-dependent helicas 25.9 1.1E+02 0.0023 29.9 4.4 37 136-172 492-529 (956)
176 PRK13360 omega amino acid--pyr 25.9 1.6E+02 0.0034 25.7 5.3 41 135-175 103-152 (442)
177 PRK06062 hypothetical protein; 25.7 1.6E+02 0.0035 25.7 5.3 50 126-175 99-152 (451)
178 TIGR00234 tyrS tyrosyl-tRNA sy 25.6 98 0.0021 26.6 3.8 39 139-177 30-78 (377)
179 KOG0685 Flavin-containing amin 25.6 1.2E+02 0.0026 27.0 4.4 33 136-169 20-53 (498)
180 PRK06918 4-aminobutyrate amino 25.6 1.5E+02 0.0032 25.9 5.0 37 140-176 117-156 (451)
181 PRK07986 adenosylmethionine--8 25.6 1.6E+02 0.0036 25.6 5.3 37 139-175 104-148 (428)
182 PRK04537 ATP-dependent RNA hel 25.5 1E+02 0.0022 28.0 4.0 37 136-172 256-292 (572)
183 TIGR01848 PHA_reg_PhaR polyhyd 25.1 76 0.0016 22.2 2.5 27 74-100 19-47 (107)
184 PRK05965 hypothetical protein; 25.0 1.9E+02 0.0042 25.3 5.7 49 127-175 95-153 (459)
185 PF01206 TusA: Sulfurtransfera 24.6 1.8E+02 0.0039 17.9 4.3 40 126-165 16-55 (70)
186 PRK10696 tRNA 2-thiocytidine b 24.4 94 0.002 24.9 3.3 41 134-174 26-74 (258)
187 PF02254 TrkA_N: TrkA-N domain 24.1 1.3E+02 0.0028 20.3 3.6 18 142-159 2-19 (116)
188 KOG0351 ATP-dependent DNA heli 24.0 1E+02 0.0022 30.0 3.9 40 132-171 480-519 (941)
189 KOG0029 Amine oxidase [Seconda 24.0 1.1E+02 0.0025 27.3 4.0 42 138-180 16-63 (501)
190 PRK12906 secA preprotein trans 24.0 1.8E+02 0.004 27.7 5.5 38 135-172 438-475 (796)
191 smart00012 PTPc_DSPc Protein t 23.9 1.7E+02 0.0037 18.8 4.2 15 137-151 39-54 (105)
192 smart00404 PTPc_motif Protein 23.9 1.7E+02 0.0037 18.8 4.2 15 137-151 39-54 (105)
193 cd02071 MM_CoA_mut_B12_BD meth 23.7 2.6E+02 0.0056 19.4 5.9 32 81-112 20-58 (122)
194 PRK09050 beta-ketoadipyl CoA t 23.5 1.9E+02 0.004 25.0 5.2 46 131-176 74-122 (401)
195 PRK13530 arsenate reductase; P 23.3 1.8E+02 0.004 20.7 4.4 34 138-171 4-39 (133)
196 PRK13107 preprotein translocas 23.3 1.5E+02 0.0032 28.8 4.7 39 135-173 447-485 (908)
197 PRK00919 GMP synthase subunit 23.3 2.3E+02 0.0049 23.7 5.5 35 137-171 21-58 (307)
198 PRK08360 4-aminobutyrate amino 23.3 1.9E+02 0.0042 25.2 5.3 37 139-175 102-141 (443)
199 PRK08297 L-lysine aminotransfe 23.0 2.2E+02 0.0047 24.9 5.6 40 136-175 108-162 (443)
200 PF02863 Arg_repressor_C: Argi 22.9 1.2E+02 0.0027 19.1 3.0 26 134-159 44-69 (70)
201 cd03422 YedF YedF is a bacteri 22.8 2E+02 0.0044 17.9 4.9 40 126-165 15-54 (69)
202 PF09664 DUF2399: Protein of u 22.8 2.5E+02 0.0053 20.8 5.1 48 121-170 24-74 (152)
203 PRK13359 beta-ketoadipyl CoA t 22.6 1.7E+02 0.0036 25.4 4.7 46 130-175 73-121 (400)
204 KOG2585 Uncharacterized conser 22.6 1.1E+02 0.0024 26.9 3.5 29 140-168 269-301 (453)
205 cd03423 SirA SirA (also known 22.5 2E+02 0.0044 17.8 4.4 40 126-165 15-54 (69)
206 PRK07483 hypothetical protein; 22.2 2.6E+02 0.0056 24.4 5.9 50 126-175 77-136 (443)
207 PRK06504 acetyl-CoA acetyltran 22.2 1.5E+02 0.0033 25.5 4.4 44 132-175 74-120 (390)
208 PRK11522 putrescine--2-oxoglut 22.1 1.9E+02 0.0042 25.4 5.1 42 135-176 138-185 (459)
209 COG1440 CelA Phosphotransferas 22.0 1.1E+02 0.0024 21.2 2.8 26 138-163 2-31 (102)
210 TIGR03714 secA2 accessory Sec 21.9 2.4E+02 0.0051 26.9 5.8 39 135-173 422-460 (762)
211 PF13399 LytR_C: LytR cell env 21.8 1.8E+02 0.0039 18.9 3.8 29 137-165 3-33 (90)
212 KOG0331 ATP-dependent RNA heli 21.7 2E+02 0.0044 26.0 5.1 37 136-172 340-376 (519)
213 PF04343 DUF488: Protein of un 21.4 82 0.0018 22.1 2.2 22 77-98 2-25 (122)
214 PRK07036 hypothetical protein; 21.3 2.5E+02 0.0054 24.7 5.6 42 134-175 108-158 (466)
215 PRK07030 adenosylmethionine--8 21.2 2.3E+02 0.005 24.9 5.4 39 137-175 106-153 (466)
216 PRK11018 hypothetical protein; 21.1 2.4E+02 0.0052 18.1 4.9 40 126-165 24-63 (78)
217 PRK06541 hypothetical protein; 21.1 2.3E+02 0.0049 25.0 5.3 38 139-176 113-159 (460)
218 PRK09200 preprotein translocas 20.9 2.1E+02 0.0047 27.3 5.3 38 135-172 426-463 (790)
219 PRK09427 bifunctional indole-3 20.8 3.1E+02 0.0068 24.3 6.1 87 75-165 143-235 (454)
220 COG1611 Predicted Rossmann fol 20.6 1.8E+02 0.0038 22.8 4.1 10 138-147 15-24 (205)
221 PRK06082 4-aminobutyrate amino 20.6 2.3E+02 0.005 24.9 5.2 50 126-175 117-170 (459)
222 TIGR02430 pcaF beta-ketoadipyl 20.6 2.3E+02 0.0049 24.5 5.1 44 133-176 75-121 (400)
223 PRK12904 preprotein translocas 20.6 2.1E+02 0.0046 27.4 5.2 37 135-171 428-464 (830)
224 PRK06781 amidophosphoribosyltr 20.6 1.6E+02 0.0035 26.2 4.2 31 136-166 347-380 (471)
225 PRK07046 aminotransferase; Val 20.6 1.1E+02 0.0023 26.9 3.1 36 140-175 132-170 (453)
226 TIGR00246 tRNA_RlmH_YbeA rRNA 20.4 2.3E+02 0.0049 21.1 4.4 45 128-174 57-107 (153)
227 COG1204 Superfamily II helicas 20.4 3.6E+02 0.0078 25.7 6.7 84 76-159 192-275 (766)
228 PRK09548 PTS system ascorbate- 20.2 2.1E+02 0.0046 26.4 4.9 29 135-163 504-537 (602)
229 PF04122 CW_binding_2: Putativ 20.0 1.4E+02 0.003 19.6 3.0 35 136-172 49-83 (92)
230 PRK05769 4-aminobutyrate amino 20.0 2.6E+02 0.0055 24.4 5.4 37 139-175 116-155 (441)
No 1
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-27 Score=194.56 Aligned_cols=166 Identities=22% Similarity=0.315 Sum_probs=139.8
Q ss_pred CCccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc---cccCCCcc----------
Q 029759 20 PPVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL---EAVGVPTS---------- 74 (188)
Q Consensus 20 ~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~---------- 74 (188)
+|.+-|+.+.| +.+..+|++.+.+||+|+..+..+ |+.++..++|++ .+.+++.+
T Consensus 68 ~~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~ 147 (285)
T COG2897 68 LPHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTT 147 (285)
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCcc
Confidence 68899999999 999999999999999999877665 889999999888 23333321
Q ss_pred ----------cCHHHHHHHHhCC-CEEEecCChhhHhc----------CCCCCeEEcCcccccC-CCCCCCHHHHHHHHh
Q 029759 75 ----------VPVRVAHELLQAG-HRYLDVRTPEEFSA----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVST 132 (188)
Q Consensus 75 ----------i~~~~~~~~l~~~-~~iIDvR~~~ef~~----------ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~ 132 (188)
++..++...++.. .+|||+|+++||.. ||||||+|+|+...++ .+.+++++.++....
T Consensus 148 f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 148 FSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYA 227 (285)
T ss_pred ccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHH
Confidence 4556666666654 78999999999997 9999999999987776 466677777777764
Q ss_pred c--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCcccccc
Q 029759 133 R--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEEK 185 (188)
Q Consensus 133 ~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~~ 185 (188)
. +++++++|+||++|.+|+..+..|+.+|+.+. +|+|+|.+|... +.|++++.
T Consensus 228 ~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 228 DAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred hcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 4 88999999999999999999999999999877 999999999998 77998865
No 2
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.93 E-value=2e-25 Score=185.68 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=134.8
Q ss_pred CCccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc---cccCCC------------
Q 029759 20 PPVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL---EAVGVP------------ 72 (188)
Q Consensus 20 ~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~------------ 72 (188)
.+.+.|+.+.| +++..+|+++++.+|+|+..+... ||.++..++|++ ...+.+
T Consensus 81 ~~~~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~ 160 (320)
T PLN02723 81 LPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILK 160 (320)
T ss_pred cCCCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccc
Confidence 45667888999 999999999999999998654332 778888888776 111111
Q ss_pred -----------------------------cccCHHHHHHHHhC-CCEEEecCChhhH-----------hcCCCCCeEEcC
Q 029759 73 -----------------------------TSVPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVP 111 (188)
Q Consensus 73 -----------------------------~~i~~~~~~~~l~~-~~~iIDvR~~~ef-----------~~ghIpgAinip 111 (188)
..++.+++.+.+++ +.+|||+|+++|| ..||||||+|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip 240 (320)
T PLN02723 161 ASAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVP 240 (320)
T ss_pred ccccccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccC
Confidence 01567788887765 4889999999998 469999999999
Q ss_pred cccccC-CCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCcccccc
Q 029759 112 YMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEEK 185 (188)
Q Consensus 112 ~~~~~~-~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~~ 185 (188)
+...+. ++.+++.+.+++.+.. ++++++||+||++|.+|+.+++.|+.+||+++ +|+|||.+|... ++|+++..
T Consensus 241 ~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~ 319 (320)
T PLN02723 241 FPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST 319 (320)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence 976544 5788999999998875 67889999999999999999999999999998 899999999987 78988753
No 3
>PLN02160 thiosulfate sulfurtransferase
Probab=99.93 E-value=7.6e-25 Score=161.17 Aligned_cols=113 Identities=43% Similarity=0.683 Sum_probs=97.1
Q ss_pred ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCe--EEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151 (188)
Q Consensus 74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgA--inip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~ 151 (188)
.++++++.++++++.+|||||++.||..|||||| +|+|+......+.+.+.+++......++++++||+||++|.||.
T Consensus 16 ~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~RS~ 95 (136)
T PLN02160 16 SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGARSL 95 (136)
T ss_pred EeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHHHH
Confidence 5889999999987788999999999999999999 89998544444555666666655444578899999999999999
Q ss_pred HHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759 152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL 186 (188)
Q Consensus 152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~ 186 (188)
.++..|...||+++ +|.|||.+|...|+|+++..+
T Consensus 96 ~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 131 (136)
T PLN02160 96 KATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEE 131 (136)
T ss_pred HHHHHHHHcCCCCeeecCCcHHHHhhCCCCcccccc
Confidence 99999999999988 799999999999999998654
No 4
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-24 Score=155.10 Aligned_cols=113 Identities=41% Similarity=0.626 Sum_probs=101.9
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccC-CCCcEEEEcCCC
Q 029759 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEIIVGCQSG 147 (188)
Q Consensus 70 ~~~~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~~~ivv~C~sG 147 (188)
..+.+++.++++++++.+ .++||||.++||..||+|.+||||+......+...+++|+.......+ .++.|||+|.+|
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG 99 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG 99 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence 445579999999999887 999999999999999999999999987777899999999998876654 567999999999
Q ss_pred hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccc
Q 029759 148 KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLT 182 (188)
Q Consensus 148 ~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~ 182 (188)
.||..|...|..+||+|+ +|.|||.+|.+.+.|..
T Consensus 100 ~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 100 VRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred cchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 999999999999999999 89999999999987753
No 5
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.92 E-value=3.2e-24 Score=175.57 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=128.4
Q ss_pred CccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc---cccCCCc------------
Q 029759 21 PVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL---EAVGVPT------------ 73 (188)
Q Consensus 21 ~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~------------ 73 (188)
+.+-|+.+.| +.+..+|++.++.+|+|+...... ++.++..++|++ ...+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~ 145 (281)
T PRK11493 66 PHMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEF 145 (281)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcc
Confidence 3556677888 888899999999999998754322 666666666655 1111110
Q ss_pred --------ccCHHHHHHHHhC-CCEEEecCChhhHh-----------cCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc
Q 029759 74 --------SVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133 (188)
Q Consensus 74 --------~i~~~~~~~~l~~-~~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~ 133 (188)
..+.+++...++. +.+|||+|+++||. .||||||+|+|+.+...++.+.+++.++..+..
T Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~ 225 (281)
T PRK11493 146 NAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFG 225 (281)
T ss_pred cccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHh
Confidence 1344455555544 48999999999995 699999999998776667778888899888765
Q ss_pred --cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh-CCCccccc
Q 029759 134 --FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEE 184 (188)
Q Consensus 134 --l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~ 184 (188)
++++++||+||++|.+|+.+++.|+.+||+++ +|+|||.+|.. .++|+++.
T Consensus 226 ~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 226 RGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred cCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 57889999999999999999999999999988 89999999998 58999865
No 6
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.91 E-value=1.4e-23 Score=187.05 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=133.2
Q ss_pred ccCCCchhh-hhcccccccCCceeEEeecCCCc-----------ccccccccccccc---cccCCC--------------
Q 029759 22 VLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKI-----------LSFCPKASLRGNL---EAVGVP-------------- 72 (188)
Q Consensus 22 ~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~-------------- 72 (188)
..-|+.+.| +.+..+|++.++.+|+|+..... +|+.++..++|++ ...+.+
T Consensus 61 ~~lp~~~~l~~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~ 140 (610)
T PRK09629 61 GLLPDTADLEQLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVT 140 (610)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCccee
Confidence 344777889 88899999999999999876532 2778888888876 111111
Q ss_pred ------cccCHHHHHHHHhC-CCEEEecCChhhHh--------cCCCCCeEEcCcccccC-CCCCCCHHHHHHHHhc--c
Q 029759 73 ------TSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--F 134 (188)
Q Consensus 73 ------~~i~~~~~~~~l~~-~~~iIDvR~~~ef~--------~ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~~--l 134 (188)
..++.+++.+.+++ +.+|||+|+++||. .||||||+|+|+...+. ++.+++++.+++.+.. +
T Consensus 141 ~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi 220 (610)
T PRK09629 141 LTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220 (610)
T ss_pred eccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence 12577888888865 47899999999995 69999999999865443 5678888899988876 5
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCcccccc
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEEK 185 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~~ 185 (188)
+++++||+||++|.+|+.+++.|+.+||+++ +|+|||.+|... ++|+++..
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 7889999999999999999999999999998 899999999987 78988754
No 7
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.90 E-value=3.9e-23 Score=146.31 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=81.6
Q ss_pred CcccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCC
Q 029759 72 PTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSG 147 (188)
Q Consensus 72 ~~~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG 147 (188)
...++++++.++++++ .+|||+|++.||..||||||+|+|+. .+...+..+ +++++||+||++|
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C~~G 76 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNCAGR 76 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEECCCC
Confidence 3468999999998754 68999999999999999999999984 444444444 4578999999999
Q ss_pred hHHHHHHHHHHHCCCCc-e-EecCcHHhhhhCC
Q 029759 148 KRSMMAATDLLNAVSTH-A-NYPSKPLTWFLSN 178 (188)
Q Consensus 148 ~~a~~a~~~L~~~G~~~-v-~l~GG~~~W~~~g 178 (188)
.+|..+++.|+..||++ + ++.||+.+|..+|
T Consensus 77 ~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 77 TRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred chHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 99999999999999987 6 7999999998764
No 8
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.90 E-value=3.5e-23 Score=143.91 Aligned_cols=96 Identities=25% Similarity=0.333 Sum_probs=83.9
Q ss_pred ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHH
Q 029759 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA 153 (188)
Q Consensus 74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a 153 (188)
.++++++.++++++.+|||+|++++|..||||||+|+|+. .+......++++++||+||++|.+|..+
T Consensus 3 ~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~~ 70 (99)
T cd01527 3 TISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQN 70 (99)
T ss_pred ccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHHH
Confidence 5789999999888899999999999999999999999984 2322222367889999999999999999
Q ss_pred HHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759 154 ATDLLNAVSTHA-NYPSKPLTWFLSNQLL 181 (188)
Q Consensus 154 ~~~L~~~G~~~v-~l~GG~~~W~~~g~p~ 181 (188)
+..|.++||+++ ++.||+.+|...++|+
T Consensus 71 ~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 71 AERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 999999999988 6999999999988874
No 9
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.89 E-value=7.9e-23 Score=144.49 Aligned_cols=101 Identities=24% Similarity=0.282 Sum_probs=89.3
Q ss_pred CcccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (188)
Q Consensus 72 ~~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a 150 (188)
...++++++.+++++ +.+|||+|++++|..||||||+|+|+. .+......+++++++++||.+|.+|
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~------------~l~~~~~~~~~~~~ivv~c~~g~~s 71 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTND------------SLGAFMRQADFDTPVMVMCYHGNSS 71 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHH------------HHHHHHHhcCCCCCEEEEeCCCCCH
Confidence 346899999999865 489999999999999999999999983 5555556678899999999999999
Q ss_pred HHHHHHHHHCCCCce-EecCcHHhhhhCCCccccc
Q 029759 151 MMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE 184 (188)
Q Consensus 151 ~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~ 184 (188)
..++..|+..||+++ ++.||+.+|...++|++..
T Consensus 72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred HHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 999999999999988 7999999999999998764
No 10
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.88 E-value=7.5e-23 Score=142.89 Aligned_cols=97 Identities=22% Similarity=0.212 Sum_probs=77.8
Q ss_pred ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~ 152 (188)
.++++++.++++++ .+|||||+++||..||||||+|+|+.+... ..+.+.... .++++++||+||.+|.+|..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~-----~~~~~~~~~-~~~~~~~ivvyC~~G~rs~~ 76 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE-----FPFWLDENL-DLLKGKKVLMYCTGGIRCEK 76 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH-----hHHHHHhhh-hhcCCCEEEEECCCchhHHH
Confidence 47899999988754 899999999999999999999999852100 011122111 23688999999999999999
Q ss_pred HHHHHHHCCCCce-EecCcHHhhhh
Q 029759 153 AATDLLNAVSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 153 a~~~L~~~G~~~v-~l~GG~~~W~~ 176 (188)
++..|..+||+++ ++.||+.+|.+
T Consensus 77 a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 77 ASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHhCCcceeeechhHHHHhC
Confidence 9999999999988 79999999963
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.88 E-value=3.5e-22 Score=139.18 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=77.9
Q ss_pred cCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759 75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (188)
Q Consensus 75 i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~ 152 (188)
++++++.++++++ .+|||||+++||..||||||+|+|+...... ..+........++++++||+||.+|.+|..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~----~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD----FLEIEEDILDQLPDDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH----HHHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence 5788999988764 7999999999999999999999998521100 000113345557889999999999999999
Q ss_pred HHHHHHHCCCCce-EecCcHHhhh
Q 029759 153 AATDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 153 a~~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
++..|+..||+ + ++.||+.+|.
T Consensus 77 aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 77 VAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHcCce-eEEeCCcHHhhc
Confidence 99999999999 6 7999999995
No 12
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.87 E-value=8.8e-22 Score=134.72 Aligned_cols=88 Identities=33% Similarity=0.422 Sum_probs=78.2
Q ss_pred cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHH
Q 029759 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 154 (188)
Q Consensus 75 i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~ 154 (188)
++++++.+++.++.++||+|++++|..||||||+|+|+. .+......++++++||+||.+|.++..++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~------------~~~~~~~~~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLD------------ELRDRLNELPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHH------------HHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence 468899999877789999999999999999999999983 45555555788899999999999999999
Q ss_pred HHHHHCCCCce-EecCcHHhhh
Q 029759 155 TDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 155 ~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
..|+..|| ++ +|.||+.+|.
T Consensus 69 ~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 69 RILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHCCC-CEEEecCCHHHhc
Confidence 99999999 77 7999999995
No 13
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.87 E-value=1.2e-21 Score=135.40 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=73.5
Q ss_pred cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-c-CCCCcEEEEcCCChH
Q 029759 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-F-RKHDEIIVGCQSGKR 149 (188)
Q Consensus 75 i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-l-~~~~~ivv~C~sG~~ 149 (188)
|+++++.+++.++ +++||+|+++||..||||||+|+|+. .+...... . .++++||+||.+|.+
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~------------~l~~~~~~~~~~~~~~iv~~c~~G~r 68 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG------------QLVQETDHFAPVRGARIVLADDDGVR 68 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH------------HHHHHHHHhcccCCCeEEEECCCCCh
Confidence 5788999988653 67999999999999999999999984 23222222 2 246899999999999
Q ss_pred HHHHHHHHHHCCCCce-EecCcHHhhh
Q 029759 150 SMMAATDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 150 a~~a~~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
|..++..|+.+||+ + ++.||+.+|.
T Consensus 69 s~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 69 ADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 99999999999999 7 7999999996
No 14
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.87 E-value=7.9e-22 Score=138.48 Aligned_cols=99 Identities=28% Similarity=0.371 Sum_probs=80.3
Q ss_pred CHHHHHHHHh-C-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHH
Q 029759 76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM 151 (188)
Q Consensus 76 ~~~~~~~~l~-~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~ 151 (188)
+++++.++++ . +.+|||+|++.+|..||||||+|+|+.+. .+....+++.+...+.. ++++++||+||++|.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSL-PDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHh-hhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence 5778888886 4 49999999999999999999999998642 22223344455555543 356899999999999999
Q ss_pred HHHHHHHHCCCCce-EecCcHHhhh
Q 029759 152 MAATDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 152 ~a~~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
.+++.|..+||+++ .|.||+.+|.
T Consensus 81 ~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 81 AAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHcCCccceecCCcHHHHc
Confidence 99999999999988 7999999995
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.87 E-value=1.8e-21 Score=138.11 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=83.9
Q ss_pred CCcccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHH-HHHhccCCCCcEEEEcCC
Q 029759 71 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQS 146 (188)
Q Consensus 71 ~~~~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~-~~~~~l~~~~~ivv~C~s 146 (188)
....++++++.+++..+ .+|||+|++.+|..||||||+|+|+. .+. +....++++++||+||++
T Consensus 6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~ 73 (110)
T cd01521 6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDG 73 (110)
T ss_pred eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECC
Confidence 34468999999998753 79999999999999999999999984 333 344557889999999998
Q ss_pred C--hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759 147 G--KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLL 181 (188)
Q Consensus 147 G--~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~ 181 (188)
| .+|..+++.|+.+||+ + +|.||+.+|..+|+|+
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 7 4899999999999997 6 7999999999998874
No 16
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.87 E-value=1.9e-21 Score=135.80 Aligned_cols=91 Identities=29% Similarity=0.395 Sum_probs=77.4
Q ss_pred cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc---CCCCcEEEEcCCCh
Q 029759 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK 148 (188)
Q Consensus 75 i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l---~~~~~ivv~C~sG~ 148 (188)
++++++.++++.+ .+|||+|+++||..+|||||+|+|+. .+......+ ++++++|+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 6788999988754 79999999999999999999999984 333333333 35899999999999
Q ss_pred HHHHHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759 149 RSMMAATDLLNAVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~ 177 (188)
+|..++..|...||+++ +|+||+.+|...
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 99999999999999988 799999999753
No 17
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.86 E-value=2.2e-21 Score=141.31 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=78.3
Q ss_pred cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCC----CC------------------CCHHHHHHHH-
Q 029759 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MT------------------KNLKFVEEVS- 131 (188)
Q Consensus 75 i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~----~~------------------~~~~~l~~~~- 131 (188)
|+++++.++++++.+|||||+++||..||||||+|+|+....... .+ ..++++....
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 578999999987789999999999999999999999985322100 00 0011222221
Q ss_pred hccCCCCcEEEEcC-CChHHHHHHHHHHHCCCCce-EecCcHHhhhh
Q 029759 132 TRFRKHDEIIVGCQ-SGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 132 ~~l~~~~~ivv~C~-sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~ 176 (188)
..++++++||+||+ +|.+|..+++.|+.+||+ + .++||+.+|..
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~-v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGID-VPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCCc-eeEeCCcHHHHHh
Confidence 25788999999997 689999999999999995 6 79999999964
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.86 E-value=3.3e-21 Score=132.87 Aligned_cols=89 Identities=27% Similarity=0.360 Sum_probs=79.5
Q ss_pred cCHHHHHHHHhC--CCEEEecCChhhHhc--CCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759 75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (188)
Q Consensus 75 i~~~~~~~~l~~--~~~iIDvR~~~ef~~--ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a 150 (188)
++++++.+++++ +.+|||+|++.+|.. ||||||+|+|+. .+......++++++||+||.+|.+|
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~ivv~c~~g~~s 69 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDED------------SLDDWLGDLDRDRPVVVYCYHGNSS 69 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHH------------HHHHHHhhcCCCCCEEEEeCCCChH
Confidence 678899998876 389999999999999 999999999983 4555556678899999999999999
Q ss_pred HHHHHHHHHCCCCce-EecCcHHhhh
Q 029759 151 MMAATDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 151 ~~a~~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
..+++.|+..||+++ ++.||+.+|.
T Consensus 70 ~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 70 AQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 999999999999998 7999999995
No 19
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=2.3e-21 Score=138.67 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=86.0
Q ss_pred cCHHHHHHHHhCC-CEEEecCChhhHhc-----------CCCCCeEEcCcccccC-CCCCCCHHHHHHHHhc--cCCCCc
Q 029759 75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE 139 (188)
Q Consensus 75 i~~~~~~~~l~~~-~~iIDvR~~~ef~~-----------ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~~--l~~~~~ 139 (188)
++++++.++++++ .+|||+|+..+|.. ||||||+|+|+..... .+.+.+++.+...+.. ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 4688888888654 89999999999987 9999999999865443 3456677778777765 467899
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhh
Q 029759 140 IIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 140 ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
||+||++|.+|..+++.|+.+||+++ .|+||+.+|.
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 99999999999999999999999988 7999999996
No 20
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.86 E-value=3.8e-21 Score=138.49 Aligned_cols=104 Identities=19% Similarity=0.128 Sum_probs=88.6
Q ss_pred cCHHHHHHHHhC-CCEEEecCCh-------hhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCCCCc
Q 029759 75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 139 (188)
Q Consensus 75 i~~~~~~~~l~~-~~~iIDvR~~-------~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~~~~ 139 (188)
++++++.+++.+ +.+|||+|++ ++|..||||||+|+|+.+... .+.+.+.+.+.+.+.. ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 678999999876 5899999999 999999999999999865432 3567777777777654 578899
Q ss_pred EEEEcCC-ChHHHHHHHHHHHCCCCce-EecCcHHhhhhCC
Q 029759 140 IIVGCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSN 178 (188)
Q Consensus 140 ivv~C~s-G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g 178 (188)
||+||++ |.+|..+++.|+.+||+++ +|.|||.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 9999999 5999999999999999998 7999999998754
No 21
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.86 E-value=9e-21 Score=143.38 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=82.3
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChh----hHhcC---------CCCCeEEcCcccccCCCCCCC--HHHHHHHHhc---
Q 029759 73 TSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTKN--LKFVEEVSTR--- 133 (188)
Q Consensus 73 ~~i~~~~~~~~l~~~-~~iIDvR~~~----ef~~g---------hIpgAinip~~~~~~~~~~~~--~~~l~~~~~~--- 133 (188)
..++++++.++++++ .+|||+|+++ +|..| |||||+|+|+.. .+.+.. .+.+...+..
T Consensus 36 ~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~---~~~l~~~~~~~~~~~l~~~~~ 112 (162)
T TIGR03865 36 RVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTG---YGNLAPAWQAYFRRGLERATG 112 (162)
T ss_pred cccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccC---CCCCCCchhHHHHHHHHHhcC
Confidence 469999999999765 8999999876 46544 999999999631 111121 1223343432
Q ss_pred cCCCCcEEEEcCCCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759 134 FRKHDEIIVGCQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLL 181 (188)
Q Consensus 134 l~~~~~ivv~C~sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~ 181 (188)
.+++++||+||++|. +|..+++.|+.+||++| +|+||+.+|..+|+|+
T Consensus 113 ~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 113 GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 268899999999986 89999999999999999 7999999999999985
No 22
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.86 E-value=3.4e-21 Score=139.12 Aligned_cols=103 Identities=23% Similarity=0.246 Sum_probs=81.0
Q ss_pred cccCHHHHHHHHhC--CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHH---HHhccCCCCcEEEEcCCC
Q 029759 73 TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVGCQSG 147 (188)
Q Consensus 73 ~~i~~~~~~~~l~~--~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~---~~~~l~~~~~ivv~C~sG 147 (188)
..++++++.+++++ +.+|||+|+++||..||||||+|+|+...... ...+.. ....++++++||+||++|
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~C~~G 82 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVVCRRG 82 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEECCCC
Confidence 36899999999875 37899999999999999999999998521110 000100 012246789999999999
Q ss_pred hHHHHHHHHHHHCCC-Cce-EecCcHHhhhhCCCc
Q 029759 148 KRSMMAATDLLNAVS-THA-NYPSKPLTWFLSNQL 180 (188)
Q Consensus 148 ~~a~~a~~~L~~~G~-~~v-~l~GG~~~W~~~g~p 180 (188)
.+|..++..|+..|| +++ ++.||+.+|..+..+
T Consensus 83 ~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 83 NDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred CcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 999999999999999 677 899999999887443
No 23
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.85 E-value=3.4e-21 Score=134.40 Aligned_cols=100 Identities=23% Similarity=0.257 Sum_probs=76.1
Q ss_pred cCHHHHHHHHhC-CCEEEecCChhhH-hcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759 75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (188)
Q Consensus 75 i~~~~~~~~l~~-~~~iIDvR~~~ef-~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~ 152 (188)
++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..... .......+ ....++++++||+||++|.+|..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~--~~~~~~~~--~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF--WADPDSPY--HKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh--hcCccccc--cccCCCCCCeEEEEcCCCCcHHH
Confidence 578889888874 5899999999998 579999999999741100 00000000 01125788999999999999999
Q ss_pred HHHHHHHCCCCce-EecCcHHhhhhCC
Q 029759 153 AATDLLNAVSTHA-NYPSKPLTWFLSN 178 (188)
Q Consensus 153 a~~~L~~~G~~~v-~l~GG~~~W~~~g 178 (188)
+++.|+.+||+++ +|+||+.+|...|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 9999999999987 8999999997653
No 24
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.84 E-value=1.3e-20 Score=140.00 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=82.1
Q ss_pred HHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHH
Q 029759 80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDL 157 (188)
Q Consensus 80 ~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L 157 (188)
+.+++.++ .+|||+|++.+|..||||||+|+|. ..+......++++++||+||.+|.+|..+++.|
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L 69 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADL 69 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHH
Confidence 34555544 7999999999999999999999997 467777777777899999999999999999999
Q ss_pred HHCCCCce-EecCcHHhhhhCCCccccc
Q 029759 158 LNAVSTHA-NYPSKPLTWFLSNQLLTEE 184 (188)
Q Consensus 158 ~~~G~~~v-~l~GG~~~W~~~g~p~~~~ 184 (188)
+..||+++ +|.||+.+|...|+|+++.
T Consensus 70 ~~~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 70 AALTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred HHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence 99999988 7999999999999999875
No 25
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.84 E-value=1.2e-20 Score=135.45 Aligned_cols=101 Identities=27% Similarity=0.291 Sum_probs=81.9
Q ss_pred cCHHHHHHHHhC--CCEEEecCChhhHh-cCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759 75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151 (188)
Q Consensus 75 i~~~~~~~~l~~--~~~iIDvR~~~ef~-~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~ 151 (188)
++++++.+++++ +.+|||+|++.||+ .||||||+|+|+.+.... ..+..+..+....++++++||+||.+|.+|.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 578999999876 48999999999999 999999999998533321 1123344444443468899999999999999
Q ss_pred HHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759 152 MAATDLLNAVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~ 177 (188)
.++..|...||+++ .+.||+.+|...
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 99999999999998 699999999765
No 26
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.84 E-value=1.1e-20 Score=132.52 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=75.4
Q ss_pred cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccCC-CCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (188)
Q Consensus 75 i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~-~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a 150 (188)
|+++++.+++++ +.+|||+|++.||..||||||+|+|+...... +....-.... .+.. ..+++||+||.+|.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~-~~~~-~~~~~vv~~c~~g~~s 78 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVP-RLEN-YKGKIIVIVSHSHKHA 78 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchH-HHHh-hcCCeEEEEeCCCccH
Confidence 578999999875 37999999999999999999999998532211 1110000011 1111 2478999999999999
Q ss_pred HHHHHHHHHCCCCce-EecCcHHhhh
Q 029759 151 MMAATDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 151 ~~a~~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
..+++.|+.+||+++ +|.||+.+|.
T Consensus 79 ~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 79 ALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999998 7999999995
No 27
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.83 E-value=2.6e-20 Score=134.46 Aligned_cols=91 Identities=26% Similarity=0.330 Sum_probs=76.4
Q ss_pred ccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHh------ccCCCCcE
Q 029759 74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI 140 (188)
Q Consensus 74 ~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~------~l~~~~~i 140 (188)
.|+++++.+++.+ +++|||+|+++||..||||||+|+|.. +.+...+. .++++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence 4889999999864 379999999999999999999999983 22333322 15788999
Q ss_pred EEEcC-CChHHHHHHHHHHHC------------CCCce-EecCcHHhhh
Q 029759 141 IVGCQ-SGKRSMMAATDLLNA------------VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 141 vv~C~-sG~~a~~a~~~L~~~------------G~~~v-~l~GG~~~W~ 175 (188)
|+||+ +|.||..+++.|+.. ||.++ +|.||+.+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99997 999999999999985 99998 7999999984
No 28
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.83 E-value=3.8e-20 Score=127.06 Aligned_cols=94 Identities=28% Similarity=0.344 Sum_probs=73.6
Q ss_pred CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHH--hccCCCCcEEEEcCCChHHHHHHHHHHHCCCCc
Q 029759 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTH 164 (188)
Q Consensus 87 ~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~--~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~ 164 (188)
+.+|||+|+.++|..+|||||+|+|+..............+.... ..++++++||+||.+|.++..+++.|+..||++
T Consensus 4 ~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~ 83 (100)
T smart00450 4 KVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFKN 83 (100)
T ss_pred CEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCCc
Confidence 479999999999999999999999986433322111111222222 225678999999999999999999999999998
Q ss_pred e-EecCcHHhhhhCCCc
Q 029759 165 A-NYPSKPLTWFLSNQL 180 (188)
Q Consensus 165 v-~l~GG~~~W~~~g~p 180 (188)
+ +|.||+.+|...+.|
T Consensus 84 v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 84 VYLLDGGYKEWSAAGPP 100 (100)
T ss_pred eEEecCCHHHHHhcCCC
Confidence 8 799999999988754
No 29
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.83 E-value=4.2e-20 Score=130.24 Aligned_cols=101 Identities=26% Similarity=0.365 Sum_probs=78.0
Q ss_pred CHHHHHHHHh-CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHH----HHhccCCCCcEEEEcCCChHH
Q 029759 76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE----VSTRFRKHDEIIVGCQSGKRS 150 (188)
Q Consensus 76 ~~~~~~~~l~-~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~----~~~~l~~~~~ivv~C~sG~~a 150 (188)
|++++++++. .+.+|||+|++.+|..||||||+|+|+............+.+.. ....++++++||+||.+|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 5889999993 45999999999999999999999999854322233333333333 333357789999999888887
Q ss_pred HHHHHH-----HHHCCCCce-EecCcHHhhhh
Q 029759 151 MMAATD-----LLNAVSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 151 ~~a~~~-----L~~~G~~~v-~l~GG~~~W~~ 176 (188)
..++.. |..+||+++ +|+|||.+|.+
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 776666 889999998 89999999976
No 30
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.83 E-value=6.4e-20 Score=135.29 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=84.2
Q ss_pred cCHHHHHHHHh-----CCCEEEecCCh--------hhHhc------------CCCCCeEEcCcccccC-C----CCCCCH
Q 029759 75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL 124 (188)
Q Consensus 75 i~~~~~~~~l~-----~~~~iIDvR~~--------~ef~~------------ghIpgAinip~~~~~~-~----~~~~~~ 124 (188)
++++++.+.++ .+.+|||+|.. ++|.. ||||||+|+|+..... + ..+.+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 57888999887 34999999987 89988 9999999999864332 1 335556
Q ss_pred HHHHHHHhc--cCCCCcEEEEcCC---ChHHHHHHHHHHHCCCCce-EecCcHHhhh
Q 029759 125 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLLNAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 125 ~~l~~~~~~--l~~~~~ivv~C~s---G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~ 175 (188)
+.+++.+.. ++++++||+||++ |..|+++++.|+.+|++++ +|+|||.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 678888766 6788999999986 7899999999999999999 8999999995
No 31
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.82 E-value=4.2e-20 Score=127.80 Aligned_cols=84 Identities=20% Similarity=0.316 Sum_probs=68.9
Q ss_pred CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v 165 (188)
.+.+|||+|++++|..||||||+|+|+... ....+.++. +..++++++||+||.+|.+|..+++.|+..||+++
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence 348999999999999999999999997421 112333333 33357789999999999999999999999999998
Q ss_pred -EecCcHHhhh
Q 029759 166 -NYPSKPLTWF 175 (188)
Q Consensus 166 -~l~GG~~~W~ 175 (188)
+|.||+.+|.
T Consensus 85 ~~l~GG~~~W~ 95 (96)
T cd01529 85 ALLDGGTSAWV 95 (96)
T ss_pred EEeCCCHHHhc
Confidence 7999999995
No 32
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.82 E-value=7.3e-20 Score=155.45 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=89.2
Q ss_pred ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHH
Q 029759 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM 151 (188)
Q Consensus 74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~ 151 (188)
.++++++.++++++.+|||+|+++||..||||||+|+|+. .+...... .+++++||+||++|.+|.
T Consensus 4 ~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs~ 71 (376)
T PRK08762 4 EISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRSA 71 (376)
T ss_pred eeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHHH
Confidence 5889999999988899999999999999999999999983 45444443 267899999999999999
Q ss_pred HHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759 152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL 186 (188)
Q Consensus 152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~ 186 (188)
.+++.|+..||+++ +|.||+.+|...++|+++...
T Consensus 72 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 72 HAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred HHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence 99999999999988 799999999999999887643
No 33
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.82 E-value=8.7e-20 Score=149.38 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=93.9
Q ss_pred cccCHHHHHHHHhCC-CEEEecCC----------hhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--c
Q 029759 73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F 134 (188)
Q Consensus 73 ~~i~~~~~~~~l~~~-~~iIDvR~----------~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l 134 (188)
..++++++.++++++ ++|||+|+ +.+|..||||||+|+|+..... ...+.+++.+++.+.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 358999999999764 89999996 7889999999999999754322 1334567788887777 5
Q ss_pred CCCCcEEEEcCCCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759 135 RKHDEIIVGCQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK 185 (188)
Q Consensus 135 ~~~~~ivv~C~sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~ 185 (188)
+++++||+||.++. .++++++.|..+||+++ +|+||+.+|..+++|+++..
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 137 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGA 137 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCC
Confidence 78899999999875 47789999999999998 89999999999999998764
No 34
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.80 E-value=2.9e-19 Score=159.47 Aligned_cols=113 Identities=16% Similarity=0.070 Sum_probs=97.0
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCccccc-----CCCCCCCHHHHHHHHhc--cCCCCcEEEEc
Q 029759 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRKHDEIIVGC 144 (188)
Q Consensus 73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~-----~~~~~~~~~~l~~~~~~--l~~~~~ivv~C 144 (188)
..|+++++.++++++ .+|||+|++++|..||||||+|+|+.... ..+.+.+.+.+++.+.. ++++++||+||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 468999999999764 89999999999999999999999975322 13566667788888777 47889999999
Q ss_pred CCC-hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759 145 QSG-KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK 185 (188)
Q Consensus 145 ~sG-~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~ 185 (188)
++| ..|.+++|.|+.+||+++ +|+||+.+|..+|+|++++.
T Consensus 89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~ 131 (610)
T PRK09629 89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV 131 (610)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence 976 578899999999999999 89999999999999988764
No 35
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.80 E-value=1.7e-19 Score=123.91 Aligned_cols=78 Identities=23% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHH-HHHhccC-CCCcEEEEcCCChH--HHHHHHHHHHCC
Q 029759 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLLNAV 161 (188)
Q Consensus 86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~-~~~~~l~-~~~~ivv~C~sG~~--a~~a~~~L~~~G 161 (188)
++++|||+|++++|..+|||||+|+|.. .+. .....++ ++++||+||.+|.+ |..+++.|+..|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 3489999999999999999999999984 222 2222243 58899999999876 689999999999
Q ss_pred CCce-EecCcHHhhh
Q 029759 162 STHA-NYPSKPLTWF 175 (188)
Q Consensus 162 ~~~v-~l~GG~~~W~ 175 (188)
|+++ ++.||+.+|.
T Consensus 77 ~~~v~~l~GG~~~W~ 91 (92)
T cd01532 77 YTDVALLEGGLQGWR 91 (92)
T ss_pred ccCEEEccCCHHHHc
Confidence 9998 7999999996
No 36
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.80 E-value=4.2e-19 Score=124.12 Aligned_cols=80 Identities=31% Similarity=0.465 Sum_probs=67.6
Q ss_pred CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCChHHHHHHHHHHHCCCC
Q 029759 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAVST 163 (188)
Q Consensus 86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG~~a~~a~~~L~~~G~~ 163 (188)
....+||+|+++||..||||||+|+|+. .+......+ +++++||+||.+|.+|..++..|..+||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 3478999999999999999999999984 444444332 46789999999999999999999999999
Q ss_pred ceEecCcHHhhhhC
Q 029759 164 HANYPSKPLTWFLS 177 (188)
Q Consensus 164 ~v~l~GG~~~W~~~ 177 (188)
++...||+.+|...
T Consensus 85 ~v~~~GG~~~~~~~ 98 (101)
T TIGR02981 85 HAENAGGIKDIAMP 98 (101)
T ss_pred eEEecCCHHHhhhh
Confidence 99656999999753
No 37
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.80 E-value=3.9e-19 Score=124.87 Aligned_cols=78 Identities=29% Similarity=0.419 Sum_probs=67.2
Q ss_pred CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCChHHHHHHHHHHHCCCCc
Q 029759 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAVSTH 164 (188)
Q Consensus 87 ~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~ 164 (188)
+-++||+|+++||..||||||+|+|+. .+...+..+ +++++||+||++|.+|..++..|..+||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 368999999999999999999999984 444444443 456889999999999999999999999999
Q ss_pred eEecCcHHhhhh
Q 029759 165 ANYPSKPLTWFL 176 (188)
Q Consensus 165 v~l~GG~~~W~~ 176 (188)
++..||+.+|..
T Consensus 88 v~~~GG~~~~~~ 99 (104)
T PRK10287 88 AENAGGLKDIAM 99 (104)
T ss_pred EEecCCHHHHhh
Confidence 966899999964
No 38
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.79 E-value=5.8e-19 Score=146.96 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=92.5
Q ss_pred ccCHHHHHHHHhC-CCEEEecC--------C-hhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCC
Q 029759 74 SVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRK 136 (188)
Q Consensus 74 ~i~~~~~~~~l~~-~~~iIDvR--------~-~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~ 136 (188)
.|+++++.+++++ +.+|||+| . ..+|..||||||+|+|+..... ...+.+++.+++.+.. +++
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~~ 102 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIEN 102 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCCC
Confidence 6899999999975 48999996 3 3789999999999999754322 2345567788888877 467
Q ss_pred CCcEEEEcCCCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759 137 HDEIIVGCQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK 185 (188)
Q Consensus 137 ~~~ivv~C~sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~ 185 (188)
+++||+||++|. .+.++++.|+.+||++| +|+||+.+|..+|+|+++..
T Consensus 103 ~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 103 KDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred CCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 899999998875 46788999999999998 89999999999999998753
No 39
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.79 E-value=5.2e-19 Score=119.49 Aligned_cols=84 Identities=42% Similarity=0.605 Sum_probs=69.7
Q ss_pred HHHHh-CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHH-HHhccCCCCcEEEEcCCChHHHHHHHHHH
Q 029759 81 HELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEIIVGCQSGKRSMMAATDLL 158 (188)
Q Consensus 81 ~~~l~-~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~-~~~~l~~~~~ivv~C~sG~~a~~a~~~L~ 158 (188)
.++++ .+..|||+|++.+|..+|||||+|+|+. +.... ....++++++||+||++|.+|..+++.|+
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~ 71 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLR 71 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHH
Confidence 34443 4589999999999999999999999984 22221 13346788999999999999999999999
Q ss_pred HCCCCce-EecCcHHhhh
Q 029759 159 NAVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 159 ~~G~~~v-~l~GG~~~W~ 175 (188)
..||+++ +|.||+.+|.
T Consensus 72 ~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 72 KAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred HhCcccEEEecCChhhcC
Confidence 9999998 7999999994
No 40
>PRK01415 hypothetical protein; Validated
Probab=99.78 E-value=1e-18 Score=139.64 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred cccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759 73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151 (188)
Q Consensus 73 ~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~ 151 (188)
..++++++.+++++ +++|||+|++.||..||||||+|+|.....+ .+..+. ....++++++|++||.+|.||.
T Consensus 112 ~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e-----~~~~~~-~~~~~~k~k~Iv~yCtgGiRs~ 185 (247)
T PRK01415 112 EYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ-----FPAWVQ-QNQELLKGKKIAMVCTGGIRCE 185 (247)
T ss_pred cccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh-----hHHHHh-hhhhhcCCCeEEEECCCChHHH
Confidence 46999999999975 4999999999999999999999999731000 001111 1233578899999999999999
Q ss_pred HHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759 152 MAATDLLNAVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~ 177 (188)
.++..|...||++| .|.||+.+|.++
T Consensus 186 kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 186 KSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred HHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 99999999999999 699999999875
No 41
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.2e-18 Score=122.56 Aligned_cols=87 Identities=34% Similarity=0.438 Sum_probs=76.0
Q ss_pred CCCEEEecCChhhHhcCCCCC-eEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCC
Q 029759 86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVS 162 (188)
Q Consensus 86 ~~~~iIDvR~~~ef~~ghIpg-Ainip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~ 162 (188)
.+.++||+|++.||..+|||| ++|+|.. .+...... ++++++||+||.+|.||..++..|+.+||
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~------------~~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~ 86 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLS------------ELKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF 86 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeecc------------cchhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence 359999999999999999999 9999985 33333222 46889999999999999999999999999
Q ss_pred Cce-EecCcHHhhhhCCCccccc
Q 029759 163 THA-NYPSKPLTWFLSNQLLTEE 184 (188)
Q Consensus 163 ~~v-~l~GG~~~W~~~g~p~~~~ 184 (188)
+++ .+.||+.+|..+++|++..
T Consensus 87 ~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 87 TNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred ccccccCCcHHHHHhcCCCcccC
Confidence 998 8999999999999988754
No 42
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.77 E-value=2.3e-18 Score=139.05 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=79.6
Q ss_pred CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEc
Q 029759 72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 144 (188)
Q Consensus 72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C 144 (188)
...++++++.+++++ +.+|||||++.||+.||||||+|+|+.+..+ .++.+......+ ++++|++||
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-----~~~~l~~~~~~~-kdk~IvvyC 182 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-----FPEALAAHRADL-AGKTVVSFC 182 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-----hHHHHHhhhhhc-CCCeEEEEC
Confidence 456999999998865 2789999999999999999999999841100 011122222223 689999999
Q ss_pred CCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759 145 QSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 145 ~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~ 177 (188)
.+|.||..++..|+..||+++ ++.||+.+|.++
T Consensus 183 ~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 183 TGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred CCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 999999999999999999988 799999999875
No 43
>PRK07411 hypothetical protein; Validated
Probab=99.75 E-value=5.8e-18 Score=144.31 Aligned_cols=103 Identities=23% Similarity=0.265 Sum_probs=83.2
Q ss_pred CcccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759 72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (188)
Q Consensus 72 ~~~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~ 148 (188)
...++++++.++++++ .+|||+|+++||..||||||+|+|+.+.... ... ..+..++++++||+||.+|.
T Consensus 281 ~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~ 353 (390)
T PRK07411 281 IPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGG 353 (390)
T ss_pred cCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCH
Confidence 3469999999998753 6899999999999999999999998522110 001 12334567899999999999
Q ss_pred HHHHHHHHHHHCCCCceEecCcHHhhhhCCCcc
Q 029759 149 RSMMAATDLLNAVSTHANYPSKPLTWFLSNQLL 181 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~ 181 (188)
||..+++.|+.+||+++.+.||+.+|..+..|.
T Consensus 354 RS~~aa~~L~~~G~~~~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 354 RSAKALGILKEAGIEGTNVKGGITAWSREVDPS 386 (390)
T ss_pred HHHHHHHHHHHcCCCeEEecchHHHHHHhcCCC
Confidence 999999999999999778999999998875554
No 44
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.75 E-value=6e-18 Score=144.38 Aligned_cols=97 Identities=25% Similarity=0.376 Sum_probs=82.7
Q ss_pred cccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHH-HHHhccCCCCcEEEEcCCChH
Q 029759 73 TSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQSGKR 149 (188)
Q Consensus 73 ~~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~-~~~~~l~~~~~ivv~C~sG~~ 149 (188)
..++++++.++++++ .+|||+|+++||..||||||+|+|+.+ ... ...+.++++++||+||++|.+
T Consensus 287 ~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~-----------l~~~~~~~~l~~d~~iVvyC~~G~r 355 (392)
T PRK07878 287 STITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSE-----------ILSGEALAKLPQDRTIVLYCKTGVR 355 (392)
T ss_pred CccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHH-----------hcchhHHhhCCCCCcEEEEcCCChH
Confidence 468999999998764 689999999999999999999999841 111 234457889999999999999
Q ss_pred HHHHHHHHHHCCCCce-EecCcHHhhhhCCCc
Q 029759 150 SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQL 180 (188)
Q Consensus 150 a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p 180 (188)
|..+++.|+..||+++ +|.||+.+|..+..+
T Consensus 356 S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 356 SAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred HHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 9999999999999988 799999999887443
No 45
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.75 E-value=5.5e-18 Score=120.60 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=72.3
Q ss_pred ccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcC-CC
Q 029759 74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ-SG 147 (188)
Q Consensus 74 ~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~-sG 147 (188)
.++++++.+++..+ .+|||+|+. ||..||||||+|+|+.... ..+.+.... .+++++||+||. +|
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~~ 73 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALSQ 73 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecCC
Confidence 57899999998753 689999999 9999999999999984110 112222222 256789999998 66
Q ss_pred hHHHHHHHHHHH--------CCCCce-EecCcHHhhhhC
Q 029759 148 KRSMMAATDLLN--------AVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 148 ~~a~~a~~~L~~--------~G~~~v-~l~GG~~~W~~~ 177 (188)
.++..++..|.. .|+.++ ++.||+.+|...
T Consensus 74 ~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 74 VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 888888777643 499988 799999999753
No 46
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.74 E-value=9.4e-18 Score=139.07 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=79.8
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151 (188)
Q Consensus 73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~ 151 (188)
..++++++.++++++ .+|||+|++.||..||||||+|+|+....+ .++.+.... ...++++||+||.+|.|+.
T Consensus 112 ~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~-----~~~~l~~~~-~~~kdk~IvvyC~~G~Rs~ 185 (314)
T PRK00142 112 TYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE-----FPPWVEENL-DPLKDKKVVMYCTGGIRCE 185 (314)
T ss_pred cccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh-----hHHHHHHhc-CCCCcCeEEEECCCCcHHH
Confidence 468999999988764 899999999999999999999999842110 011111111 2357899999999999999
Q ss_pred HHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759 152 MAATDLLNAVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~ 177 (188)
.++..|...||++| .|.||+.+|...
T Consensus 186 ~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 186 KASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 99999999999988 799999999774
No 47
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.72 E-value=1.5e-17 Score=118.39 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=68.3
Q ss_pred ccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEc
Q 029759 74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC 144 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-------~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C 144 (188)
.++++++++++.++ .+|||+|++ ||..||||||+|+|+.. + .+.+......+ .+.++||+||
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~-~-------~~~~~~~~~~~~~~~~~~iv~~C 73 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQS-C-------YQTLPQVYALFSLAGVKLAIFYC 73 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhH-H-------HHHHHHHHHHhhhcCCCEEEEEC
Confidence 47899999998763 789999999 99999999999999841 1 01122222222 3457899999
Q ss_pred CC-ChHHHHHHHHHH----HCCC--Cce-EecCcHHhhh
Q 029759 145 QS-GKRSMMAATDLL----NAVS--THA-NYPSKPLTWF 175 (188)
Q Consensus 145 ~s-G~~a~~a~~~L~----~~G~--~~v-~l~GG~~~W~ 175 (188)
.+ |.||..++..|. ..|| .++ +|.||+.+|.
T Consensus 74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 97 578777665543 4576 567 6899999995
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.71 E-value=3.1e-17 Score=137.43 Aligned_cols=108 Identities=23% Similarity=0.211 Sum_probs=79.5
Q ss_pred CHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccC----------CC---------CCCC---HHHHHHHHhc
Q 029759 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----------SG---------MTKN---LKFVEEVSTR 133 (188)
Q Consensus 76 ~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~----------~~---------~~~~---~~~l~~~~~~ 133 (188)
...++.+++.++.+|||||++.||..||||||+|+|+.++.+ .| .+.+ .+.+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~ 83 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD 83 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence 356777777778999999999999999999999999853321 01 1111 1122222223
Q ss_pred cC-CCCcEEEEcC-CChHHHHHHHHHHHCCCCceEecCcHHhhhhCCCcccc
Q 029759 134 FR-KHDEIIVGCQ-SGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTE 183 (188)
Q Consensus 134 l~-~~~~ivv~C~-sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~~~ 183 (188)
++ ++++||+||. +|.||..+++.|...||+...+.||+.+|...+.+...
T Consensus 84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred cccCCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHh
Confidence 33 7899999995 78999999999999999644899999999987654433
No 49
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.71 E-value=5.8e-17 Score=129.84 Aligned_cols=164 Identities=24% Similarity=0.318 Sum_probs=127.2
Q ss_pred cccccCCCCCccCCCchhh-hhcccccccCCceeEEeec--CCC-----------cccccccccccccc---cccCCCc-
Q 029759 12 FAAGASSLPPVLCPHGNNR-RGLLSLTVDQQRCDNIGFI--SSK-----------ILSFCPKASLRGNL---EAVGVPT- 73 (188)
Q Consensus 12 ~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~--~~~-----------~~~~~~~~~~~~~~---~~~~~~~- 73 (188)
.+.+.++..++.-|..+.| +....+|+++...+|+|+. .+. .|++.++..+++++ .+.+.+.
T Consensus 56 ~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~ 135 (286)
T KOG1529|consen 56 IISYPSSPYRHMLPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVD 135 (286)
T ss_pred ccccCCCcccccCccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccc
Confidence 5677888999999999999 9999999999999999987 322 23788888888866 1111111
Q ss_pred ---------------ccCHHHHHHH-------H-hCCCEEEecCChhhHh-----------cCCCCCeEEcCcccccC-C
Q 029759 74 ---------------SVPVRVAHEL-------L-QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVG-S 118 (188)
Q Consensus 74 ---------------~i~~~~~~~~-------l-~~~~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~~-~ 118 (188)
.++...+..+ + .+++.+||+|...+|. .||||||+|+|+.+.+. +
T Consensus 136 s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~ 215 (286)
T KOG1529|consen 136 SSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD 215 (286)
T ss_pred cccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc
Confidence 1222222211 1 1249999999999996 68999999999988776 4
Q ss_pred CCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh
Q 029759 119 GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 119 ~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~ 176 (188)
+..++++.+...+.. +..++|+|+.|+.|+.++..+..|.+.| .++ .|+|+|.+|..
T Consensus 216 g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 216 GFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred cccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 555557788877765 5668999999999999999999999999 555 99999999985
No 50
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.8e-16 Score=129.04 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=97.1
Q ss_pred CcccCHHHHHHHHhC------CCEEEecCCh--hhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCC
Q 029759 72 PTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRK 136 (188)
Q Consensus 72 ~~~i~~~~~~~~l~~------~~~iIDvR~~--~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~ 136 (188)
...++++.+.+.+++ +..+++++.. ++|..+|||||+++++...+. .+++.+++.+.+.+.. |++
T Consensus 10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~ 89 (285)
T COG2897 10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRN 89 (285)
T ss_pred ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 346899999998864 3666666665 899999999999999876553 3678889999999887 688
Q ss_pred CCcEEEEcCC-ChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759 137 HDEIIVGCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL 186 (188)
Q Consensus 137 ~~~ivv~C~s-G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~ 186 (188)
+.+||+|.+. +..|.+++|.|+.+|+++| +|+||+.+|.++|+|++++..
T Consensus 90 d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~ 141 (285)
T COG2897 90 DDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP 141 (285)
T ss_pred CCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC
Confidence 8999999976 4679999999999999998 899999999999999998554
No 51
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.69 E-value=1.2e-16 Score=134.73 Aligned_cols=90 Identities=31% Similarity=0.378 Sum_probs=75.3
Q ss_pred ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHH--hccCCCCcEEEEcCCChHHH
Q 029759 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQSGKRSM 151 (188)
Q Consensus 74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~--~~l~~~~~ivv~C~sG~~a~ 151 (188)
.++++++.++ ..+.+|||+|+++||..+|||||+|+|+. .+.... ..++++++||+||++|.+|.
T Consensus 262 ~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rS~ 328 (355)
T PRK05597 262 VLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLS------------AIREGANPPSVSAGDEVVVYCAAGVRSA 328 (355)
T ss_pred ccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHH------------HhhhccccccCCCCCeEEEEcCCCHHHH
Confidence 5778888744 45589999999999999999999999984 222211 12567899999999999999
Q ss_pred HHHHHHHHCCCCce-EecCcHHhhhh
Q 029759 152 MAATDLLNAVSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 152 ~a~~~L~~~G~~~v-~l~GG~~~W~~ 176 (188)
.+++.|+..||+++ ++.||+.+|..
T Consensus 329 ~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 329 QAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 99999999999998 79999999964
No 52
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.69 E-value=1e-16 Score=132.56 Aligned_cols=96 Identities=24% Similarity=0.203 Sum_probs=70.6
Q ss_pred CEEEecCChhhHhcCCCCCeEEcCcccccCC---CCC-------------------CCHHHHHHHHhccCCCCcEEEEcC
Q 029759 88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEIIVGCQ 145 (188)
Q Consensus 88 ~~iIDvR~~~ef~~ghIpgAinip~~~~~~~---~~~-------------------~~~~~l~~~~~~l~~~~~ivv~C~ 145 (188)
.+|||||++.||..||||||+|+|+..+.+. |.. .-++.+.+.....+++..||+||.
T Consensus 3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC~ 82 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYCW 82 (311)
T ss_pred CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEEC
Confidence 6899999999999999999999998532210 100 011223333333445556999995
Q ss_pred -CChHHHHHHHHHHHCCCCceEecCcHHhhhhCCCcccc
Q 029759 146 -SGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTE 183 (188)
Q Consensus 146 -sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~~~ 183 (188)
+|.+|..+++.|..+||+..++.||+.+|...+.+...
T Consensus 83 ~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw~~~~~~~~~ 121 (311)
T TIGR03167 83 RGGMRSGSLAWLLAQIGFRVPRLEGGYKAYRRFVIDQLE 121 (311)
T ss_pred CCChHHHHHHHHHHHcCCCEEEecChHHHHHHhhhhhhh
Confidence 78999999999999999644899999999988765544
No 53
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.64 E-value=1.4e-15 Score=111.08 Aligned_cols=101 Identities=18% Similarity=0.097 Sum_probs=72.9
Q ss_pred cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccC----CC------CCCCHHHHHHHHhccCCCCcEE
Q 029759 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVG----SG------MTKNLKFVEEVSTRFRKHDEII 141 (188)
Q Consensus 75 i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~----~~------~~~~~~~l~~~~~~l~~~~~iv 141 (188)
|+++++.++++. +.+|||+|+..+|..||||||+|+|+..... .+ .+..++.... +... ++++||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence 789999999974 4899999999999999999999999863221 01 1222222222 2222 578999
Q ss_pred EEcCCChH---------HHHHHHHHHH--CCCCce-EecCcHHhhhhC
Q 029759 142 VGCQSGKR---------SMMAATDLLN--AVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 142 v~C~sG~~---------a~~a~~~L~~--~G~~~v-~l~GG~~~W~~~ 177 (188)
+||+++.+ +..++..|.. .|+.++ .|+||+.+|.+.
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 99998764 5566666766 466778 799999999763
No 54
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.60 E-value=2.9e-15 Score=126.83 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=71.6
Q ss_pred ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC---CeEEcCcccccCCCCCCCHHHHH------HHHhccCCCCcEEEE
Q 029759 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVE------EVSTRFRKHDEIIVG 143 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIp---gAinip~~~~~~~~~~~~~~~l~------~~~~~l~~~~~ivv~ 143 (188)
.++++++.++++++ .++||||+++||+.|||| ||+|+|+. .+. .....++++ +||+|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~------------~l~~~~~~~~~l~~~~~~-~Ivv~ 338 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLS------------AITDDADILHALSPIDGD-NVVVY 338 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHH------------HhhcchhhhhhccccCCC-cEEEE
Confidence 58899999998765 799999999999999998 59999984 232 122233444 89999
Q ss_pred cCCChHHHHHHHHHHHCCCCc-e-EecCcHH
Q 029759 144 CQSGKRSMMAATDLLNAVSTH-A-NYPSKPL 172 (188)
Q Consensus 144 C~sG~~a~~a~~~L~~~G~~~-v-~l~GG~~ 172 (188)
|.+|.||..++..|+..||++ + .+.||+.
T Consensus 339 C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 339 CASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 999999999999999999996 6 7999975
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.48 E-value=1.5e-13 Score=120.26 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCEEEecCChhhHhcCCCCC----eEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHH
Q 029759 78 RVAHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA 153 (188)
Q Consensus 78 ~~~~~~l~~~~~iIDvR~~~ef~~ghIpg----Ainip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a 153 (188)
.+..+.+..+.++||+|+++||..+|||| |+|+|+. .+......+++++++|+||++|.+|..+
T Consensus 398 ~~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~------------~l~~~~~~l~~~~~iivyC~~G~rS~~a 465 (482)
T PRK01269 398 VETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFY------------KLSTQFGDLDQSKTYLLYCDRGVMSRLQ 465 (482)
T ss_pred hHHHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHH------------HHHHHHhhcCCCCeEEEECCCCHHHHHH
Confidence 33444555679999999999999999999 9999984 4555556678889999999999999999
Q ss_pred HHHHHHCCCCce-Eec
Q 029759 154 ATDLLNAVSTHA-NYP 168 (188)
Q Consensus 154 ~~~L~~~G~~~v-~l~ 168 (188)
+..|+.+||+++ .|.
T Consensus 466 a~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 466 ALYLREQGFSNVKVYR 481 (482)
T ss_pred HHHHHHcCCccEEecC
Confidence 999999999998 454
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.35 E-value=1e-12 Score=106.07 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=79.3
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChH
Q 029759 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKR 149 (188)
Q Consensus 73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~ 149 (188)
..++|+++.+++.+. .++||+|...||+.||..||++.+..+. .+|..+.... .-++++|+.||.+|.|
T Consensus 113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tF--------refP~~v~~~~~~~~~KkVvmyCTGGIR 184 (308)
T COG1054 113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETF--------REFPAWVEENLDLLKDKKVVMYCTGGIR 184 (308)
T ss_pred CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhh--------hhhHHHHHHHHHhccCCcEEEEcCCcee
Confidence 358999999999764 9999999999999999999999996411 1233333222 2356899999999999
Q ss_pred HHHHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759 150 SMMAATDLLNAVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 150 a~~a~~~L~~~G~~~v-~l~GG~~~W~~~ 177 (188)
..++..+|...||++| .|+||+..+.++
T Consensus 185 CEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 185 CEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred ehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 9999999999999999 699999888665
No 57
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.20 E-value=2.4e-11 Score=99.92 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=78.1
Q ss_pred ccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccC-CCCcEEEEcCCChHH
Q 029759 74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEIIVGCQSGKRS 150 (188)
Q Consensus 74 ~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~~~ivv~C~sG~~a 150 (188)
.++..+++++++++ .++||+|++.+|+..|+|+|+|||+.+...... ++....++ ..++|+++|..|+.|
T Consensus 318 Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-------~~~~~~~~~~~~~I~ViCrrGNdS 390 (427)
T KOG2017|consen 318 RVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-------KKLQGDLNTESKDIFVICRRGNDS 390 (427)
T ss_pred cccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-------hhhcccccccCCCEEEEeCCCCch
Confidence 68999999999874 999999999999999999999999852221100 12222232 457899999999999
Q ss_pred HHHHHHHHHCCCC-ce-EecCcHHhhhhCC
Q 029759 151 MMAATDLLNAVST-HA-NYPSKPLTWFLSN 178 (188)
Q Consensus 151 ~~a~~~L~~~G~~-~v-~l~GG~~~W~~~g 178 (188)
.++++.|++...+ ++ ...||+.+|...-
T Consensus 391 Q~Av~~Lre~~~~~~vrDvigGl~~w~~~v 420 (427)
T KOG2017|consen 391 QRAVRILREKFPDSSVRDVIGGLKAWAAKV 420 (427)
T ss_pred HHHHHHHHhhCCchhhhhhhhHHHHHHHhc
Confidence 9999999987776 56 7999999998763
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.12 E-value=5.3e-10 Score=90.05 Aligned_cols=113 Identities=19% Similarity=0.138 Sum_probs=89.9
Q ss_pred ccCHHHHHHHHhC-CCEEEecC---------ChhhHhcCCCCCeEEcCccccc-----CCCCCCCHHHHHHHHhc--cCC
Q 029759 74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK 136 (188)
Q Consensus 74 ~i~~~~~~~~l~~-~~~iIDvR---------~~~ef~~ghIpgAinip~~~~~-----~~~~~~~~~~l~~~~~~--l~~ 136 (188)
.++++.+.+++++ +.+|||+- ...||..-|||||.++.++... ...++..++.+++.... +++
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n 85 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN 85 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence 4778888888865 48999986 2457778899999999875332 24556666666666555 578
Q ss_pred CCcEEEEcC--CCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759 137 HDEIIVGCQ--SGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL 186 (188)
Q Consensus 137 ~~~ivv~C~--sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~ 186 (188)
++.+|||.+ .|+ .|.+++|+++.+|+++| .|.||+..|...+.|+.+..+
T Consensus 86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 889999998 665 47899999999999999 799999999999999998765
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=2.2e-10 Score=93.91 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=70.2
Q ss_pred ccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc---C---CCCcE
Q 029759 74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---R---KHDEI 140 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-------~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l---~---~~~~i 140 (188)
.|++++++.+++.. ++|||+|-+.||..|||+||+||+.. +++...+-.. . +...+
T Consensus 157 ~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~~~i~ 225 (325)
T KOG3772|consen 157 YISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSKRVIL 225 (325)
T ss_pred ccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccCceeE
Confidence 59999999998652 67999999999999999999999974 4444443221 1 23568
Q ss_pred EEEcC-CChHHHHHHHHHHH------------CCCCce-EecCcHHhhhhC
Q 029759 141 IVGCQ-SGKRSMMAATDLLN------------AVSTHA-NYPSKPLTWFLS 177 (188)
Q Consensus 141 vv~C~-sG~~a~~a~~~L~~------------~G~~~v-~l~GG~~~W~~~ 177 (188)
||||. |..|.-.+|..|+. +-|..+ +|+||+.+|...
T Consensus 226 IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 226 IFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred EEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 99997 56788888888873 234455 699999999765
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.18 E-value=5e-06 Score=68.20 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=71.4
Q ss_pred ccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEc
Q 029759 74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGC 144 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-------~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C 144 (188)
.|+++.++..++.. -+|||.|=+.||..|||-+|+||.-. +.+...+-. +..-.-+|+.|
T Consensus 243 RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLifHC 311 (427)
T COG5105 243 RISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALIFHC 311 (427)
T ss_pred hcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEEEEe
Confidence 59999999988753 57999999999999999999999864 566665542 23346789999
Q ss_pred C-CChHHHHHHHHHHHCC------------CCce-EecCcHHhhhh
Q 029759 145 Q-SGKRSMMAATDLLNAV------------STHA-NYPSKPLTWFL 176 (188)
Q Consensus 145 ~-sG~~a~~a~~~L~~~G------------~~~v-~l~GG~~~W~~ 176 (188)
. +..|+...|..|+..- |..| +++||+...-+
T Consensus 312 EfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 312 EFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred ecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 8 4688999999987542 3556 68999987654
No 61
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.24 E-value=0.0031 Score=44.60 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=41.8
Q ss_pred ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC--------------CeEEcCcccccCCCCCCCHHHHHHHHhccC-CC
Q 029759 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--------------GAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KH 137 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIp--------------gAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~ 137 (188)
.++++++..+.+.| -.||+.|+..|=. +-| .-+++|.. +.-.+.+.++.....+. ..
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~-----~~~~~~~~v~~f~~~l~~~~ 86 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVD-----GGAITEEDVEAFADALESLP 86 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE---------TTT--HHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecC-----CCCCCHHHHHHHHHHHHhCC
Confidence 47899999999988 8999999875421 111 24677764 22234445544444342 35
Q ss_pred CcEEEEcCCChHHHHHHHH
Q 029759 138 DEIIVGCQSGKRSMMAATD 156 (188)
Q Consensus 138 ~~ivv~C~sG~~a~~a~~~ 156 (188)
+||.+||.+|.||...+..
T Consensus 87 ~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 87 KPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp TSEEEE-SCSHHHHHHHHH
T ss_pred CCEEEECCCChhHHHHHHH
Confidence 7999999999999765544
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.22 E-value=0.00054 Score=55.88 Aligned_cols=98 Identities=24% Similarity=0.228 Sum_probs=63.4
Q ss_pred HHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccC-------CCC-CC-C-------------HHHHHHHHhcc
Q 029759 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG-------SGM-TK-N-------------LKFVEEVSTRF 134 (188)
Q Consensus 77 ~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~-------~~~-~~-~-------------~~~l~~~~~~l 134 (188)
.+....++.++..+||||.+-||..|+.|+++|+|.....+ .+. .. . ..++-..+...
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455566667899999999999999999999999753221 000 00 0 01111111111
Q ss_pred CCCCcEEEEcCC-ChHHHHHHHHH-HHCCCCceEecCcHHhh
Q 029759 135 RKHDEIIVGCQS-GKRSMMAATDL-LNAVSTHANYPSKPLTW 174 (188)
Q Consensus 135 ~~~~~ivv~C~s-G~~a~~a~~~L-~~~G~~~v~l~GG~~~W 174 (188)
-.+.++-++|.. |.++...+.+| ...|++-.-..||..+.
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r~iGGeKal 126 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDYPRVIGGEKAL 126 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhhhhhhhchHHHH
Confidence 234566666865 68999999999 77787766778887653
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.02 E-value=0.0064 Score=44.43 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=51.1
Q ss_pred ccCHHHHHHHHhCC-CEEEecCChhhHhcCC----------CCC--eEEcCcccccCCCCCCCHHHHHHHHhcc-CCCCc
Q 029759 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATG--AINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDE 139 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~gh----------Ipg--Ainip~~~~~~~~~~~~~~~l~~~~~~l-~~~~~ 139 (188)
.++++++..+.+.+ -.|||.|+..|-.... -+| -+++|+. .+.+ +++.+......+ ..++|
T Consensus 14 qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~----~~~~-~~~~v~~f~~~~~~~~~p 88 (135)
T TIGR01244 14 QLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVT----AGDI-TPDDVETFRAAIGAAEGP 88 (135)
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecC----CCCC-CHHHHHHHHHHHHhCCCC
Confidence 47888888877677 8999999976633211 123 3567753 1222 333333332223 23589
Q ss_pred EEEEcCCChHHHHHHHH-HHHCCCC
Q 029759 140 IIVGCQSGKRSMMAATD-LLNAVST 163 (188)
Q Consensus 140 ivv~C~sG~~a~~a~~~-L~~~G~~ 163 (188)
|+++|.+|.|+..++.. +...|.+
T Consensus 89 vL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 89 VLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred EEEEcCCChHHHHHHHHHHHHcCCC
Confidence 99999999997766543 3334653
No 64
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.45 E-value=0.00038 Score=58.06 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=54.1
Q ss_pred cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-cC--CCCcEEEEcCC--ChH
Q 029759 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR--KHDEIIVGCQS--GKR 149 (188)
Q Consensus 75 i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-l~--~~~~ivv~C~s--G~~ 149 (188)
-+++++.+.+.....++|+|....|+.+||||++|+|.. .+...... ++ ..+++++.-.. ...
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~------------~~~~~~~~l~~~~~~~~i~l~~~~~~~~~ 83 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE------------QTEAYMAWLKADPRFADIRFKISEDDGHA 83 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH------------HHHHHHHHHhhCcCCCCceEEeccccCCC
Confidence 457888888877788999999999999999999999973 33333222 22 24666665443 222
Q ss_pred H----HHHHHHHHHCCCC-ce
Q 029759 150 S----MMAATDLLNAVST-HA 165 (188)
Q Consensus 150 a----~~a~~~L~~~G~~-~v 165 (188)
. .++...|..+|++ ++
T Consensus 84 f~~l~~~~~~eLv~~G~d~~v 104 (314)
T PRK00142 84 FPRLSVKVRKEIVALGLDDDI 104 (314)
T ss_pred cccceeeeeeeeeecCCCCCC
Confidence 2 4566667778885 55
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.55 E-value=0.19 Score=37.66 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=50.2
Q ss_pred ccccccCCCcccCHHHHHHHHhCC-CEEEecCChhhHhcC---CCCCe--EEcCcccccCC------C------------
Q 029759 64 GNLEAVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------G------------ 119 (188)
Q Consensus 64 ~~~~~~~~~~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~g---hIpgA--inip~~~~~~~------~------------ 119 (188)
+.+-..+.+..+++++...+.+-+ ..|||.|++.|.... .++|. +|+|....... .
T Consensus 19 g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
T PF13350_consen 19 GRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGM 98 (164)
T ss_dssp TSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHH
T ss_pred CcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHH
Confidence 333334445568888888777656 899999999998753 34453 45664321111 0
Q ss_pred -------CCCCHHHHHHHHhcc-CCCCcEEEEcCCC--hHHHHHHHHHHHCCCC
Q 029759 120 -------MTKNLKFVEEVSTRF-RKHDEIIVGCQSG--KRSMMAATDLLNAVST 163 (188)
Q Consensus 120 -------~~~~~~~l~~~~~~l-~~~~~ivv~C~sG--~~a~~a~~~L~~~G~~ 163 (188)
.....+.+.+.+..+ +...+++++|..| -+...++..|..+|.+
T Consensus 99 ~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 99 LEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 011245555555553 3447999999988 3456677788888876
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.98 E-value=0.012 Score=52.28 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=57.7
Q ss_pred cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHH-HHHHHHhcc-----CCCCcEEEEcCC
Q 029759 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLK-FVEEVSTRF-----RKHDEIIVGCQS 146 (188)
Q Consensus 73 ~~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~-~l~~~~~~l-----~~~~~ivv~C~s 146 (188)
+.++++++..+ ....++|.|...||..+|+++++|+|+. +.+ .+++ +..+ ..++.++++...
T Consensus 622 prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~---------~~ea~l~~-~~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 622 PRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN---------NHEADLDW-LRFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred ccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc---------chHHHHHH-hhcchHhHHhhCCeEEEeccc
Confidence 35777777655 3378999999999999999999999985 111 2222 1111 234555555444
Q ss_pred ChHHHHHHHHHHHCCCCce-EecCcHHh
Q 029759 147 GKRSMMAATDLLNAVSTHA-NYPSKPLT 173 (188)
Q Consensus 147 G~~a~~a~~~L~~~G~~~v-~l~GG~~~ 173 (188)
...+.+....+..+-+..+ .+.+|++.
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 4455555555655556655 77888773
No 67
>PLN02727 NAD kinase
Probab=91.34 E-value=1.1 Score=42.49 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHhCC-CEEEecCChhhHhcCCC------------CCeEEcCcccccCCCCCCCHHHHHHHHhcc-C-CCC
Q 029759 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHA------------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KHD 138 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghI------------pgAinip~~~~~~~~~~~~~~~l~~~~~~l-~-~~~ 138 (188)
.++++++..+.+.| -.||+.|+..|- .+.. =.-+++|.. .......+.+.+....+ + -.+
T Consensus 268 Qpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~slpk 342 (986)
T PLN02727 268 QVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSSKK 342 (986)
T ss_pred CCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhcCC
Confidence 58999999888888 799999997761 1111 024677763 22334556777766666 3 369
Q ss_pred cEEEEcCCChH
Q 029759 139 EIIVGCQSGKR 149 (188)
Q Consensus 139 ~ivv~C~sG~~ 149 (188)
||+++|.+|.+
T Consensus 343 PVLvHCKSGar 353 (986)
T PLN02727 343 PIYLHSKEGVW 353 (986)
T ss_pred CEEEECCCCCc
Confidence 99999999974
No 68
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.28 E-value=1.7 Score=31.21 Aligned_cols=79 Identities=18% Similarity=0.126 Sum_probs=50.5
Q ss_pred ccCHHHHHHHHhCC-CEEEecCChhhHh-----------cC--CCCCeEEcCcccccCCCCCCCHHHHHHHHhccC-CCC
Q 029759 74 SVPVRVAHELLQAG-HRYLDVRTPEEFS-----------AG--HATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD 138 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~-----------~g--hIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~~ 138 (188)
.++++++.+.-..+ ..||-.|+..|=. .+ -+. -.++|.. +.-..++.++.....++ .+.
T Consensus 15 Qi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~eaeg 88 (130)
T COG3453 15 QISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDEAEG 88 (130)
T ss_pred CCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHHhCC
Confidence 57888998888888 7889999865421 11 121 3456652 33334445555444443 468
Q ss_pred cEEEEcCCChHHHHHHHHHH
Q 029759 139 EIIVGCQSGKRSMMAATDLL 158 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~ 158 (188)
|+.-||.+|.||...+..-+
T Consensus 89 PVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 89 PVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred CEEeeecCCchHHHHHHHHH
Confidence 99999999999987665433
No 69
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=90.89 E-value=0.59 Score=40.77 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=23.4
Q ss_pred CEEEecCChhhHhcCCCCCeEEcCc
Q 029759 88 HRYLDVRTPEEFSAGHATGAINVPY 112 (188)
Q Consensus 88 ~~iIDvR~~~ef~~ghIpgAinip~ 112 (188)
+.|||.|+.++|.+||+..|.|+.-
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc 351 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDC 351 (669)
T ss_pred EEEEeccchhhcccccchhhhcccH
Confidence 8999999999999999999999874
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=90.12 E-value=1.4 Score=31.44 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=40.1
Q ss_pred hCC-CEEEecCChhhHhcCCCCC--eEEcCcccccCCCCCCCHHHHHHH---Hh-ccCCCCcEEEEcCCCh-HHHH--HH
Q 029759 85 QAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEV---ST-RFRKHDEIIVGCQSGK-RSMM--AA 154 (188)
Q Consensus 85 ~~~-~~iIDvR~~~ef~~ghIpg--Ainip~~~~~~~~~~~~~~~l~~~---~~-~l~~~~~ivv~C~sG~-~a~~--a~ 154 (188)
+.+ ..|||+++..++..-+.+| -.++|+.+... ......+... .. ....+++|+|+|..|. ||.. ++
T Consensus 25 ~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~ 101 (139)
T cd00127 25 KLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPS---QDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIA 101 (139)
T ss_pred HcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCC---CChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHH
Confidence 445 6899999988752222222 45666542221 1112222222 21 1335689999999985 6553 34
Q ss_pred HHHHHCCCC
Q 029759 155 TDLLNAVST 163 (188)
Q Consensus 155 ~~L~~~G~~ 163 (188)
..+...|++
T Consensus 102 ~l~~~~~~~ 110 (139)
T cd00127 102 YLMKTLGLS 110 (139)
T ss_pred HHHHHcCCC
Confidence 445555543
No 71
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=89.80 E-value=0.79 Score=38.26 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=42.7
Q ss_pred ccCHHHHHHHHhC-CCEEEecCChhhHhc---CCCC-CeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCC
Q 029759 74 SVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG 147 (188)
Q Consensus 74 ~i~~~~~~~~l~~-~~~iIDvR~~~ef~~---ghIp-gAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG 147 (188)
.+...++.+.+.+ +..|||+|+..+|.. |||| |. -|-.. .+ ...+...+..+++.++|++-|.+.
T Consensus 137 g~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~--qpsq~-----~f--e~~L~~~l~~~~~~~~i~~e~es~ 206 (311)
T TIGR03167 137 GSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGP--QPSQK-----RF--ENALAEALRRLDPGRPIFVEDESR 206 (311)
T ss_pred CcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCC--CCchH-----HH--HHHHHHHHHhCCCCceEEEEeCch
Confidence 4677788887765 489999999999998 8988 42 22210 00 123333333456678888888874
No 72
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=88.84 E-value=1.8 Score=30.99 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHhCC-CEEEecCChhhHhc-CCCCCeEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcEEEEcCCCh-HHHH--H
Q 029759 83 LLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK-RSMM--A 153 (188)
Q Consensus 83 ~l~~~-~~iIDvR~~~ef~~-ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~ivv~C~sG~-~a~~--a 153 (188)
+.+.+ ..||+++...+... ..+ --+++|..+. ......+.+...... ...+++|+|+|..|. ||.. +
T Consensus 22 l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~---~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 22 LKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDN---TETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred HHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCC---CCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 33445 68999987654221 111 2456665421 111112333333222 346789999999984 6553 4
Q ss_pred HHHHHHCCCC
Q 029759 154 ATDLLNAVST 163 (188)
Q Consensus 154 ~~~L~~~G~~ 163 (188)
++.+...|++
T Consensus 98 ~yl~~~~~~~ 107 (138)
T smart00195 98 AYLMKYRNLS 107 (138)
T ss_pred HHHHHHhCCC
Confidence 4556666764
No 73
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=87.18 E-value=1.3 Score=36.13 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=55.8
Q ss_pred ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCccccc----CCCCCCCHHHHHHH-----HhccCCCCcEEEE
Q 029759 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV----GSGMTKNLKFVEEV-----STRFRKHDEIIVG 143 (188)
Q Consensus 74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~----~~~~~~~~~~l~~~-----~~~l~~~~~ivv~ 143 (188)
.++++++.+.+..+ .+++|.|+ ...||.+|+|+-+--.+ ..|.+.-...+... ...--+...+|.|
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily 80 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY 80 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence 35677788777654 99999999 56899999987653111 11111110000000 0000022457888
Q ss_pred cCCC--hH-----HH---HHHHHHHHCCCCceEecCcHHhhhhC
Q 029759 144 CQSG--KR-----SM---MAATDLLNAVSTHANYPSKPLTWFLS 177 (188)
Q Consensus 144 C~sG--~~-----a~---~a~~~L~~~G~~~v~l~GG~~~W~~~ 177 (188)
..+. +. +. .....++..|+...++.||+.....+
T Consensus 81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 81 DESSAEWEEETGAESVLGLLLKKLKDEGCSARYLSGGFSKFQAE 124 (343)
T ss_pred ccccccccccchhhhHHHHHHHHHHhcCcchhhhhcccchhhhh
Confidence 7661 11 11 12244566788877999999876554
No 74
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=70.81 E-value=10 Score=26.71 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=38.6
Q ss_pred CC-CEEEecCChhhH---hcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-cCCCCcEEEEcCCCh-HHHH--HHHHH
Q 029759 86 AG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSGK-RSMM--AATDL 157 (188)
Q Consensus 86 ~~-~~iIDvR~~~ef---~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-l~~~~~ivv~C~sG~-~a~~--a~~~L 157 (188)
.+ ..||+++...+. ....----+++|..+.........-+.+...... ..++.+|+|+|..|. ||.. ++..+
T Consensus 17 ~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 96 (133)
T PF00782_consen 17 LGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLM 96 (133)
T ss_dssp TTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHH
Confidence 34 578999986543 2222223456665421111111111222222222 346788999999983 5443 34445
Q ss_pred HHCCCC
Q 029759 158 LNAVST 163 (188)
Q Consensus 158 ~~~G~~ 163 (188)
...|++
T Consensus 97 ~~~~~~ 102 (133)
T PF00782_consen 97 KKNGMS 102 (133)
T ss_dssp HHHTSS
T ss_pred HHcCCC
Confidence 555654
No 75
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=67.21 E-value=20 Score=28.90 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=43.1
Q ss_pred HHHHHhCC-CEEEecCCh----hhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc----CCCCcEEEEcCCC--h
Q 029759 80 AHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF----RKHDEIIVGCQSG--K 148 (188)
Q Consensus 80 ~~~~l~~~-~~iIDvR~~----~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l----~~~~~ivv~C~sG--~ 148 (188)
+.++...+ ..||++..+ ++|..-.| .-.++|+. ++...+.+.+.+....+ ..+.+|+|+|..| -
T Consensus 109 l~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI-~~~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGR 183 (241)
T PTZ00393 109 IKEMKNYNVTDLVRTCERTYNDGEITSAGI-NVHELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGR 183 (241)
T ss_pred HHHHHHcCCCEEEECCCCCCCHHHHHHcCC-eEEEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCH
Confidence 33333444 566666432 23332222 12345543 45555555555544433 4678899999986 3
Q ss_pred HHHHHHHHHHHCCCC
Q 029759 149 RSMMAATDLLNAVST 163 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~ 163 (188)
+...++..|...|++
T Consensus 184 TGtl~AayLI~~Gms 198 (241)
T PTZ00393 184 APVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHHHcCCC
Confidence 345566777777875
No 76
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=66.36 E-value=9.3 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=20.0
Q ss_pred CCcEEEEcCCChHHHHHHHHH----HHCCCC
Q 029759 137 HDEIIVGCQSGKRSMMAATDL----LNAVST 163 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L----~~~G~~ 163 (188)
.+.|++.|++|..+...+..+ ++.|++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc
Confidence 467999999998777666654 446776
No 77
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=64.88 E-value=22 Score=26.66 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.7
Q ss_pred CCCCcEEEEcCCCh---HHHHHHHHHHHCCCCce
Q 029759 135 RKHDEIIVGCQSGK---RSMMAATDLLNAVSTHA 165 (188)
Q Consensus 135 ~~~~~ivv~C~sG~---~a~~a~~~L~~~G~~~v 165 (188)
.+..+|++.|++|+ .+..+++.|...|++..
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~ 56 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVT 56 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEE
Confidence 56789999999974 46678999999999843
No 78
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=64.08 E-value=29 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=26.2
Q ss_pred CCcEEEEcCCC---hHHHHHHHHHHHCCCCce-EecC
Q 029759 137 HDEIIVGCQSG---KRSMMAATDLLNAVSTHA-NYPS 169 (188)
Q Consensus 137 ~~~ivv~C~sG---~~a~~a~~~L~~~G~~~v-~l~G 169 (188)
..+++++|+.| -....+++.|...|++.. ++.|
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeC
Confidence 56799999986 457889999999998843 5554
No 79
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=62.31 E-value=67 Score=24.41 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=16.7
Q ss_pred cCCCCcEEEEcCCC-hHHH-HHHHHHHHCC
Q 029759 134 FRKHDEIIVGCQSG-KRSM-MAATDLLNAV 161 (188)
Q Consensus 134 l~~~~~ivv~C~sG-~~a~-~a~~~L~~~G 161 (188)
+..+++++++|.+| .|+. .|+..|..+|
T Consensus 130 L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 130 LENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 56788999999986 3544 5666666655
No 80
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=61.49 E-value=66 Score=24.08 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=38.3
Q ss_pred HHHHHhCC-CEEEecCC----hhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--------cCCCCcEEEEcCC
Q 029759 80 AHELLQAG-HRYLDVRT----PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--------FRKHDEIIVGCQS 146 (188)
Q Consensus 80 ~~~~l~~~-~~iIDvR~----~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--------l~~~~~ivv~C~s 146 (188)
+..+.+.+ ..||.+-. ++.+...+|. -.++|+. ++...+.+.+...... ..++.+|+|+|..
T Consensus 33 l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~-~~~~p~~----D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~a 107 (166)
T PTZ00242 33 IKELQRYNVTHLVRVCGPTYDAELLEKNGIE-VHDWPFD----DGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVA 107 (166)
T ss_pred HHHHHhCCCeEEEecCCCCCCHHHHHHCCCE-EEecCCC----CCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCC
Confidence 44444555 56776632 2345444442 3556653 2333333222222211 2457899999998
Q ss_pred C-hHHH-HHHHHHHHCC
Q 029759 147 G-KRSM-MAATDLLNAV 161 (188)
Q Consensus 147 G-~~a~-~a~~~L~~~G 161 (188)
| .||. .++..|...|
T Consensus 108 GigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 108 GLGRAPILVALALVEYG 124 (166)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 7 3444 3444454433
No 81
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=61.40 E-value=8.8 Score=28.61 Aligned_cols=40 Identities=13% Similarity=-0.006 Sum_probs=22.2
Q ss_pred CCCCcEEEEc-C----CChHHHHHHHHHHHCCCCce-EecCcHHhh
Q 029759 135 RKHDEIIVGC-Q----SGKRSMMAATDLLNAVSTHA-NYPSKPLTW 174 (188)
Q Consensus 135 ~~~~~ivv~C-~----sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W 174 (188)
+++..+++++ + .|.+...++..|+.+|..+. +|+||-+.-
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 4554555555 4 36888889999999999876 899997643
No 82
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=60.12 E-value=13 Score=25.86 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.4
Q ss_pred CcEEEEcCCChHHHHHHHHH----HHCCCC
Q 029759 138 DEIIVGCQSGKRSMMAATDL----LNAVST 163 (188)
Q Consensus 138 ~~ivv~C~sG~~a~~a~~~L----~~~G~~ 163 (188)
++|++.|++|..+..++..+ +..|++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~ 31 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD 31 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc
Confidence 36899999998877766655 456776
No 83
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.10 E-value=14 Score=28.40 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=26.5
Q ss_pred ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCc
Q 029759 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112 (188)
Q Consensus 74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~ 112 (188)
.++.+++.+.+..++-|||+..|.|=.- | -|+||
T Consensus 7 Pin~eEA~eAieGGAdIiDVKNP~EGSL----G-ANFPW 40 (235)
T COG1891 7 PINREEAIEAIEGGADIIDVKNPAEGSL----G-ANFPW 40 (235)
T ss_pred cCCHHHHHHHhhCCCceEeccCcccCcc----c-CCChH
Confidence 4788899999988999999999885332 2 27777
No 84
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=57.69 E-value=14 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=18.2
Q ss_pred cEEEEcCCChHHHHHH-HH----HHHCCCCce
Q 029759 139 EIIVGCQSGKRSMMAA-TD----LLNAVSTHA 165 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~-~~----L~~~G~~~v 165 (188)
+|++.|++|..+...+ .. +.+.|++..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~ 32 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVE 32 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceE
Confidence 4899999996655444 44 556787643
No 85
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=57.02 E-value=24 Score=26.50 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=30.3
Q ss_pred CEEEecCChh------hHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-cC-CCCcEEEEcCCC-hHHHHHHHHH-
Q 029759 88 HRYLDVRTPE------EFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR-KHDEIIVGCQSG-KRSMMAATDL- 157 (188)
Q Consensus 88 ~~iIDvR~~~------ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-l~-~~~~ivv~C~sG-~~a~~a~~~L- 157 (188)
-.||..|+.. +|...+=-.-++++.............+.+.+.+.. ++ .+.||+++|.+| .|...+...|
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH
Confidence 4688887642 233333234455554311111222344566665554 34 458999999988 3443333333
Q ss_pred HHCCCC
Q 029759 158 LNAVST 163 (188)
Q Consensus 158 ~~~G~~ 163 (188)
+..|+.
T Consensus 114 k~Q~W~ 119 (164)
T PF03162_consen 114 KLQGWS 119 (164)
T ss_dssp HHTTB-
T ss_pred HHcCCC
Confidence 335654
No 86
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=56.52 E-value=15 Score=24.92 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=18.2
Q ss_pred cEEEEcCCChHHHHHHHHH----HHCCCC
Q 029759 139 EIIVGCQSGKRSMMAATDL----LNAVST 163 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L----~~~G~~ 163 (188)
+|++.|++|..+...+..+ ++.|++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~ 29 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID 29 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc
Confidence 3889999998777666654 446776
No 87
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=56.17 E-value=34 Score=30.23 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=25.2
Q ss_pred CcEEEEcCCC---hHHHHHHHHHHHCCCCc-eEecC
Q 029759 138 DEIIVGCQSG---KRSMMAATDLLNAVSTH-ANYPS 169 (188)
Q Consensus 138 ~~ivv~C~sG---~~a~~a~~~L~~~G~~~-v~l~G 169 (188)
++|+|+|+.| .....+|+.|...|++. +++.+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 95 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPK 95 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEEC
Confidence 6799999986 45778999999999984 35543
No 88
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=56.09 E-value=17 Score=24.54 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=17.5
Q ss_pred cEEEEcCCCh-HHHHHHHH----HHHCCCC
Q 029759 139 EIIVGCQSGK-RSMMAATD----LLNAVST 163 (188)
Q Consensus 139 ~ivv~C~sG~-~a~~a~~~----L~~~G~~ 163 (188)
+|++.|++|. +|..++.. |.+.|++
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe
Confidence 5899999997 44444444 5567886
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=55.80 E-value=54 Score=30.45 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKP 171 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~ 171 (188)
..++++|.|.+-..+...+..|...|+....|.|..
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~ 507 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQ 507 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 358899999998889999999999999877777764
No 90
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.23 E-value=37 Score=26.73 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHHhcc--CCCCc-EEEEcCCChHHHHHHH--------------------HHHHCCCCce--EecCcHHhhhhC
Q 029759 126 FVEEVSTRF--RKHDE-IIVGCQSGKRSMMAAT--------------------DLLNAVSTHA--NYPSKPLTWFLS 177 (188)
Q Consensus 126 ~l~~~~~~l--~~~~~-ivv~C~sG~~a~~a~~--------------------~L~~~G~~~v--~l~GG~~~W~~~ 177 (188)
......+.+ .+... +=|-|+||..+...++ .|+.+||.|| ....|+.+|...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 444444443 34444 4455777866554433 3788999987 355688898774
No 91
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=54.22 E-value=15 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=19.0
Q ss_pred cEEEEcCCChHHHHHHHHH----HHCCCC
Q 029759 139 EIIVGCQSGKRSMMAATDL----LNAVST 163 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L----~~~G~~ 163 (188)
+|++.|++|.+|..++..+ +..|++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~ 30 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP 30 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc
Confidence 4889999998887777665 456775
No 92
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=53.38 E-value=19 Score=31.25 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=32.6
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHHh
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLT 173 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~ 173 (188)
+.+++++|+...++...+..|...||..+-|.|-++.
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq 336 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQ 336 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhH
Confidence 4789999999999999999999999998888876653
No 93
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.26 E-value=21 Score=31.02 Aligned_cols=51 Identities=6% Similarity=-0.073 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCCCcEEEEcCCChHH----------HHHHHHHHHCCCCceEecCcHHhhhhCC
Q 029759 124 LKFVEEVSTRFRKHDEIIVGCQSGKRS----------MMAATDLLNAVSTHANYPSKPLTWFLSN 178 (188)
Q Consensus 124 ~~~l~~~~~~l~~~~~ivv~C~sG~~a----------~~a~~~L~~~G~~~v~l~GG~~~W~~~g 178 (188)
.+.+++... ..++.+||+-.-++ ......|+.+|++-+.|.||+.+|..+.
T Consensus 21 ee~l~~ll~----~~~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDp 81 (401)
T COG0162 21 EEELRKLLE----EGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGDP 81 (401)
T ss_pred HHHHHHHHh----cCCceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCCC
Confidence 455555543 23888998753222 3344567889999889999999998773
No 94
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=50.49 E-value=13 Score=27.02 Aligned_cols=27 Identities=7% Similarity=-0.150 Sum_probs=21.8
Q ss_pred cCCCchhh-hhcccccccCCceeEEeec
Q 029759 23 LCPHGNNR-RGLLSLTVDQQRCDNIGFI 49 (188)
Q Consensus 23 ~~p~~~~~-~~~~~~~~~~~~~~v~~~~ 49 (188)
.-|+.+.| +.+..+|+++.+.+|+|+.
T Consensus 76 ~~p~~~~~~~~~~~~GI~~~~~vVvY~~ 103 (138)
T cd01445 76 MEPSEAEFAAMFEAKGIDLDKHLIATDG 103 (138)
T ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence 34555688 8888899999999999975
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=50.41 E-value=44 Score=27.20 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759 122 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 122 ~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v 165 (188)
.+-+.++.....+.++..+++||..-....+....|+..||.++
T Consensus 173 ~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 173 DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 34567888888888899999999988889999999999999764
No 96
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=50.39 E-value=49 Score=28.21 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=27.6
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhh
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTW 174 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W 174 (188)
++++|+++ +.|...+.++..|...|..++ .+++..-++
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~ 172 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDR 172 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecc
Confidence 45565555 667778889999999999887 677664333
No 97
>PRK12361 hypothetical protein; Provisional
Probab=50.34 E-value=52 Score=29.58 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=41.2
Q ss_pred CHHHHHHHHhCC-CEEEecCChhhHhc-CCCC---CeEEcCcccccCCCCCCCHHHHHHHHhcc----CCCCcEEEEcCC
Q 029759 76 PVRVAHELLQAG-HRYLDVRTPEEFSA-GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRF----RKHDEIIVGCQS 146 (188)
Q Consensus 76 ~~~~~~~~l~~~-~~iIDvR~~~ef~~-ghIp---gAinip~~~~~~~~~~~~~~~l~~~~~~l----~~~~~ivv~C~s 146 (188)
++.++..+.+.+ ..|||++...+... ...+ .-+++|..+ ....+.+.+++....+ ..+.+|+|+|..
T Consensus 109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D----~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~ 184 (547)
T PRK12361 109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILD----HSVPTLAQLNQAINWIHRQVRANKSVVVHCAL 184 (547)
T ss_pred CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCC----CCCCcHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 344444444455 78999995322110 1111 346777642 2223344555544443 356889999998
Q ss_pred Ch-HHH-HHHHHHH
Q 029759 147 GK-RSM-MAATDLL 158 (188)
Q Consensus 147 G~-~a~-~a~~~L~ 158 (188)
|. ||. .++..|.
T Consensus 185 G~sRSa~vv~ayLm 198 (547)
T PRK12361 185 GRGRSVLVLAAYLL 198 (547)
T ss_pred CCCcHHHHHHHHHH
Confidence 83 444 3344444
No 98
>PRK10565 putative carbohydrate kinase; Provisional
Probab=50.02 E-value=36 Score=30.42 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=26.5
Q ss_pred cCCCCcEEEEcCCC---hHHHHHHHHHHHCCCCc-eEecC
Q 029759 134 FRKHDEIIVGCQSG---KRSMMAATDLLNAVSTH-ANYPS 169 (188)
Q Consensus 134 l~~~~~ivv~C~sG---~~a~~a~~~L~~~G~~~-v~l~G 169 (188)
+++.++|+++|+.| -+...+++.|...||+. +++.+
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~~~~ 96 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGIDVTLLAQE 96 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCceEEEEEC
Confidence 34456799999976 45778899999999984 35433
No 99
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=49.99 E-value=36 Score=25.40 Aligned_cols=46 Identities=13% Similarity=-0.001 Sum_probs=28.8
Q ss_pred HHHhccCCCCcEEEEcCCC--hHHHHHHHHHHH---CCCCce-EecCcHHhh
Q 029759 129 EVSTRFRKHDEIIVGCQSG--KRSMMAATDLLN---AVSTHA-NYPSKPLTW 174 (188)
Q Consensus 129 ~~~~~l~~~~~ivv~C~sG--~~a~~a~~~L~~---~G~~~v-~l~GG~~~W 174 (188)
.+...++++..+|+.+..| .+|...+..|.. .|..++ .+.||-.+.
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3444566777788888777 567788877766 688777 788986654
No 100
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=48.82 E-value=26 Score=23.06 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=15.8
Q ss_pred cEEEEcCCChHH-HHHHHH----HHHCCCC
Q 029759 139 EIIVGCQSGKRS-MMAATD----LLNAVST 163 (188)
Q Consensus 139 ~ivv~C~sG~~a-~~a~~~----L~~~G~~ 163 (188)
+|+++|++|..+ ..+... +...|..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 589999999644 333433 4555655
No 101
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=48.51 E-value=14 Score=26.34 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=22.6
Q ss_pred EEEEcCCC-hHHHHHHHHHHHC----CCCce-EecCcHHhh
Q 029759 140 IIVGCQSG-KRSMMAATDLLNA----VSTHA-NYPSKPLTW 174 (188)
Q Consensus 140 ivv~C~sG-~~a~~a~~~L~~~----G~~~v-~l~GG~~~W 174 (188)
|+|+|.+. .||..|...++.+ +-.++ ....|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 67888763 5777777777665 44555 566666655
No 102
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=48.40 E-value=53 Score=29.78 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=24.5
Q ss_pred CcEEEEcCCC---hHHHHHHHHHHHCCCCce-Eec
Q 029759 138 DEIIVGCQSG---KRSMMAATDLLNAVSTHA-NYP 168 (188)
Q Consensus 138 ~~ivv~C~sG---~~a~~a~~~L~~~G~~~v-~l~ 168 (188)
++|+|+|+.| .....+|+.|...||+.. ++.
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~ 170 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYP 170 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEc
Confidence 6799999986 456789999999999844 553
No 103
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=48.18 E-value=94 Score=21.79 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=29.9
Q ss_pred HHHHHHHhccCCCCcEEEEcCCChH---HHHHHHHHHHCCCCceEe
Q 029759 125 KFVEEVSTRFRKHDEIIVGCQSGKR---SMMAATDLLNAVSTHANY 167 (188)
Q Consensus 125 ~~l~~~~~~l~~~~~ivv~C~sG~~---a~~a~~~L~~~G~~~v~l 167 (188)
+.+.......+++.++++.++.... -..+...++..|++++.+
T Consensus 72 ~~L~~~l~~~~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 72 EELEAEIAQLNKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEE
Confidence 4555555555667888888887643 445667788999998843
No 104
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=47.45 E-value=35 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=24.7
Q ss_pred CcEEEEcCCC---hHHHHHHHHHHHCCCCce-Eec
Q 029759 138 DEIIVGCQSG---KRSMMAATDLLNAVSTHA-NYP 168 (188)
Q Consensus 138 ~~ivv~C~sG---~~a~~a~~~L~~~G~~~v-~l~ 168 (188)
++|+++|+.| -+...+++.|...|++.. ++.
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEc
Confidence 6799999975 567889999999999844 543
No 105
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=46.85 E-value=69 Score=29.97 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=55.4
Q ss_pred cCHHHHHHHHhC----C-CEEEecCChhhHhcCCCCCeEEcCcc-cccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (188)
Q Consensus 75 i~~~~~~~~l~~----~-~~iIDvR~~~ef~~ghIpgAinip~~-~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~ 148 (188)
++.+++.++++. + -.+|.|++.+|....---|+.-|-.+ .++. ..-.+.+...++...+++ .+++++.||.
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~-tf~vd~~~t~~L~~~ip~--~~~~VsESGI 220 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLK-DLKVDVNKYNELAADLPD--DVIKVAESGV 220 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCc-cceeCHHHHHHHHhhCCC--CcEEEEcCCC
Confidence 556666666642 3 68999999999874222233222211 1111 112234455555555653 4688999999
Q ss_pred HHHHHHHHHHHCCCCceEe
Q 029759 149 RSMMAATDLLNAVSTHANY 167 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v~l 167 (188)
.+..-+..|...|++.+.+
T Consensus 221 ~~~~d~~~l~~~G~davLI 239 (695)
T PRK13802 221 FGAVEVEDYARAGADAVLV 239 (695)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9888899999999986643
No 106
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=45.93 E-value=33 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=18.8
Q ss_pred CcEEEEcCCChHHHH-----HHHHHHHCCCC
Q 029759 138 DEIIVGCQSGKRSMM-----AATDLLNAVST 163 (188)
Q Consensus 138 ~~ivv~C~sG~~a~~-----a~~~L~~~G~~ 163 (188)
.+|++.|++|.-+.. +-..|++.|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 468999999965443 33458889995
No 107
>PTZ00110 helicase; Provisional
Probab=45.16 E-value=50 Score=29.70 Aligned_cols=47 Identities=11% Similarity=0.016 Sum_probs=35.1
Q ss_pred HHHHHHhccC-CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 126 FVEEVSTRFR-KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 126 ~l~~~~~~l~-~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
.+...+..+. ...+++|+|++-..+..++..|...|+....+.|+..
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~ 412 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKK 412 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCc
Confidence 3444444432 5678999999988888999999999998777777753
No 108
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=44.96 E-value=15 Score=29.82 Aligned_cols=90 Identities=22% Similarity=0.201 Sum_probs=52.1
Q ss_pred cCHHHHHHHHhC----C-CEEEecCChhhHhcCCCCCeEEcCcc-cccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (188)
Q Consensus 75 i~~~~~~~~l~~----~-~~iIDvR~~~ef~~ghIpgAinip~~-~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~ 148 (188)
++.+++.++++. | -.+|.|++.+|....---|+--+-.+ .++.... .+.+...++...++++ ++++..||.
T Consensus 142 L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~-vd~~~~~~l~~~ip~~--~~~iseSGI 218 (254)
T PF00218_consen 142 LSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFE-VDLNRTEELAPLIPKD--VIVISESGI 218 (254)
T ss_dssp SGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCC-BHTHHHHHHHCHSHTT--SEEEEESS-
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcc-cChHHHHHHHhhCccc--eeEEeecCC
Confidence 566666666542 4 68999999998774221122211111 1111111 1223444555556544 688889999
Q ss_pred HHHHHHHHHHHCCCCceEe
Q 029759 149 RSMMAATDLLNAVSTHANY 167 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v~l 167 (188)
.+..-+..|...|++.+.+
T Consensus 219 ~~~~d~~~l~~~G~davLV 237 (254)
T PF00218_consen 219 KTPEDARRLARAGADAVLV 237 (254)
T ss_dssp SSHHHHHHHCTTT-SEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999997643
No 109
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=44.56 E-value=16 Score=30.80 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=29.1
Q ss_pred cccCHHHHHHHHh-------CCCEEEecCChhhHhcCCCCC-eEEcC
Q 029759 73 TSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATG-AINVP 111 (188)
Q Consensus 73 ~~i~~~~~~~~l~-------~~~~iIDvR~~~ef~~ghIpg-Ainip 111 (188)
..++++++.++++ .+..+||+|.++ |+..++|+ ...|-
T Consensus 277 ~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~~i~ 322 (339)
T PRK07688 277 EEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRVLVH 322 (339)
T ss_pred CccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCEEEE
Confidence 3689999888872 358899999988 99888884 44443
No 110
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.41 E-value=50 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
+++..||||.+-..+...+..|...|+....|.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCC
Confidence 4566799999988889999999999998777777753
No 111
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=44.24 E-value=28 Score=24.09 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=19.1
Q ss_pred CcEEEEcCCChHHHHHHHHH----HHCCCC
Q 029759 138 DEIIVGCQSGKRSMMAATDL----LNAVST 163 (188)
Q Consensus 138 ~~ivv~C~sG~~a~~a~~~L----~~~G~~ 163 (188)
++|+++|+.|..+...+..+ +..|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 57999999998877776443 445665
No 112
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=44.08 E-value=37 Score=24.25 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=18.5
Q ss_pred EEEEcCCC-hHHHHHHHHHHHCCCCce-EecCcHHhh
Q 029759 140 IIVGCQSG-KRSMMAATDLLNAVSTHA-NYPSKPLTW 174 (188)
Q Consensus 140 ivv~C~sG-~~a~~a~~~L~~~G~~~v-~l~GG~~~W 174 (188)
|+|+|.+. .||..|...|+.+.-.++ ....|...|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 45666543 456666666655432234 455555544
No 113
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=43.49 E-value=34 Score=21.33 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=13.9
Q ss_pred cEEEEcCCCh-HHHHHHHHHHH
Q 029759 139 EIIVGCQSGK-RSMMAATDLLN 159 (188)
Q Consensus 139 ~ivv~C~sG~-~a~~a~~~L~~ 159 (188)
.++++|++|. .+..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 3789999994 45555555543
No 114
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=43.31 E-value=74 Score=24.68 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=22.7
Q ss_pred cCCCCcEEEEcCCC---hHHHHHHHHHHHCCCC
Q 029759 134 FRKHDEIIVGCQSG---KRSMMAATDLLNAVST 163 (188)
Q Consensus 134 l~~~~~ivv~C~sG---~~a~~a~~~L~~~G~~ 163 (188)
+++.++|+++|+.| -+...+++.|...|++
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~ 74 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE 74 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE
Confidence 34557899999975 5677888999886665
No 115
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=43.30 E-value=44 Score=29.25 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=28.4
Q ss_pred hccCCCCcEEEEcCCChHHHHHHHHHHHCCCC
Q 029759 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAVST 163 (188)
Q Consensus 132 ~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~ 163 (188)
..+.+++||++...++..+......|+..|++
T Consensus 107 D~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~ 138 (479)
T cd01300 107 DAVSPDRPVLLLRRDGHSAWVNSAALRLAGIT 138 (479)
T ss_pred hcccCCCcEEEEccCchHHHHHHHHHHHcCCC
Confidence 34568999999999999999999999999996
No 116
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=42.70 E-value=58 Score=28.52 Aligned_cols=41 Identities=20% Similarity=-0.011 Sum_probs=27.8
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHC-----CCCce-EecCcHHhhh
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNA-----VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~-----G~~~v-~l~GG~~~W~ 175 (188)
+.+...+++|+||..|..++.+|... |-..+ ...+++.+|.
T Consensus 131 p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 131 PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred CCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 33335688899998888777666542 54445 6888887764
No 117
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=42.68 E-value=63 Score=24.43 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHhc----cCCCCcEEEEcCCC-hH-HHHH-HHHHHHCCCC
Q 029759 119 GMTKNLKFVEEVSTR----FRKHDEIIVGCQSG-KR-SMMA-ATDLLNAVST 163 (188)
Q Consensus 119 ~~~~~~~~l~~~~~~----l~~~~~ivv~C~sG-~~-a~~a-~~~L~~~G~~ 163 (188)
+...+...+.+.... +.++++|++.|..| .| ++.+ |+.|...|..
T Consensus 83 ~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 83 GTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 333333444444333 35667999999987 34 4444 4555554543
No 118
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=41.38 E-value=34 Score=31.25 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=32.1
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
.+..-|+||.+-..+...+.+|...|+....|.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCC
Confidence 3566899999988899999999999999888888864
No 119
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=40.89 E-value=37 Score=23.66 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=21.4
Q ss_pred EEEcCCChHHHHHHHHHHHCCCCce
Q 029759 141 IVGCQSGKRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 141 vv~C~sG~~a~~a~~~L~~~G~~~v 165 (188)
|++.++|.-+.++.+.++++|++-+
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv 29 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETV 29 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcce
Confidence 6777889889999999999999866
No 120
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=39.69 E-value=98 Score=20.89 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=26.9
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKP 171 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~ 171 (188)
.+.+++++|.+-..+......|...+..-..+.|+.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 467899999987777788888887665544676664
No 121
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=39.56 E-value=31 Score=21.78 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHhCC--CEEEecCChhhH
Q 029759 74 SVPVRVAHELLQAG--HRYLDVRTPEEF 99 (188)
Q Consensus 74 ~i~~~~~~~~l~~~--~~iIDvR~~~ef 99 (188)
-|+.+++.+++.++ +.|+|+.+-++-
T Consensus 19 YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 19 YITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred eEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 58999999999876 999999986543
No 122
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=39.35 E-value=1.8e+02 Score=24.69 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=53.9
Q ss_pred cCHHHHHHHHhC----C-CEEEecCChhhHhcC-CCCCeEEcCcc-cccCCCCCCCHHHHHHHHh-----ccCCCCcEEE
Q 029759 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAG-HATGAINVPYM-YRVGSGMTKNLKFVEEVST-----RFRKHDEIIV 142 (188)
Q Consensus 75 i~~~~~~~~l~~----~-~~iIDvR~~~ef~~g-hIpgAinip~~-~~~~~~~~~~~~~l~~~~~-----~l~~~~~ivv 142 (188)
++.+++.++++- | -.+|.|.+.+|.... .+.|+--|-.+ .++.. .-.+.+...++.. .+++ +.+++
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~T-f~vDl~~t~~L~~~~~~~~i~~-~~~~~ 291 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLET-FEVDISNTKKLLEGERGEQIRE-KGIIV 291 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCc-ceECHHHHHHHhhhccccccCC-CCeEE
Confidence 566666666542 3 789999999998632 22244322221 11111 1112333344443 2422 34789
Q ss_pred EcCCChHHHHHHHHHHHCCCCceE
Q 029759 143 GCQSGKRSMMAATDLLNAVSTHAN 166 (188)
Q Consensus 143 ~C~sG~~a~~a~~~L~~~G~~~v~ 166 (188)
++.||.....-...|...|++.+.
T Consensus 292 VsESGI~t~~Dv~~l~~~GadAvL 315 (338)
T PLN02460 292 VGESGLFTPDDVAYVQNAGVKAVL 315 (338)
T ss_pred EECCCCCCHHHHHHHHHCCCCEEE
Confidence 999999998899999999998764
No 123
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=38.12 E-value=64 Score=32.03 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=30.9
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
+...||||.+-..+...+..|...|+....|.||+.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs 715 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMD 715 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCC
Confidence 456799999988888999999999998778899864
No 124
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=37.96 E-value=48 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCCcEEEEcCC---ChHHHHHHHHHHHCCCCceEe
Q 029759 136 KHDEIIVGCQS---GKRSMMAATDLLNAVSTHANY 167 (188)
Q Consensus 136 ~~~~ivv~C~s---G~~a~~a~~~L~~~G~~~v~l 167 (188)
.+++||++.+| |.++.....+|++.|-++|++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 57999999998 788999999999999998854
No 125
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=37.77 E-value=89 Score=24.99 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=24.1
Q ss_pred HHHHHHhccC---CCCcEEEEcCCChH---HHH--HHHHHHHCCCCce
Q 029759 126 FVEEVSTRFR---KHDEIIVGCQSGKR---SMM--AATDLLNAVSTHA 165 (188)
Q Consensus 126 ~l~~~~~~l~---~~~~ivv~C~sG~~---a~~--a~~~L~~~G~~~v 165 (188)
.++.+...++ +++.+|++|.+... ++. .-..|...||+++
T Consensus 123 ~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v 170 (265)
T COG4822 123 CVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNV 170 (265)
T ss_pred HHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCce
Confidence 4444444444 77889999986432 222 2234677899877
No 126
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=37.71 E-value=72 Score=29.00 Aligned_cols=49 Identities=12% Similarity=-0.058 Sum_probs=34.9
Q ss_pred CHHHHHHHHhccC--CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcH
Q 029759 123 NLKFVEEVSTRFR--KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKP 171 (188)
Q Consensus 123 ~~~~l~~~~~~l~--~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~ 171 (188)
..+...++...+. .+.||||+.+.-..+..+|..|..+||..+.|.||-
T Consensus 501 ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k 551 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGK 551 (673)
T ss_pred chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCc
Confidence 3334444444432 357788888876667789999999999988899884
No 127
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=36.35 E-value=96 Score=21.00 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=21.8
Q ss_pred CCCcEEEEcCCChHH-HHHHHHHHHCCCC
Q 029759 136 KHDEIIVGCQSGKRS-MMAATDLLNAVST 163 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a-~~a~~~L~~~G~~ 163 (188)
.++++++..+++.++ ...+..|+.+|++
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 468999999987665 6788899999996
No 128
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.32 E-value=51 Score=21.34 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=15.5
Q ss_pred cEEEEcCCChH-HHHHHHH----HHHCCCC
Q 029759 139 EIIVGCQSGKR-SMMAATD----LLNAVST 163 (188)
Q Consensus 139 ~ivv~C~sG~~-a~~a~~~----L~~~G~~ 163 (188)
+++++|++|.. |...... +...|+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~ 30 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIE 30 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 37999999964 4444434 4456664
No 129
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=36.00 E-value=77 Score=26.36 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCC-ce-EecCcHH
Q 029759 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVST-HA-NYPSKPL 172 (188)
Q Consensus 125 ~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~-~v-~l~GG~~ 172 (188)
+.+......+.++.+++++|++-..+...+..|+..+.. ++ .+.|++.
T Consensus 210 ~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 210 SSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred HHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 344444444456788999999877788889999988875 55 6888753
No 130
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=35.76 E-value=1e+02 Score=26.17 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=21.8
Q ss_pred cCHHHHHHHHh-CCCEEEecCChhhHhc---CCCCC
Q 029759 75 VPVRVAHELLQ-AGHRYLDVRTPEEFSA---GHATG 106 (188)
Q Consensus 75 i~~~~~~~~l~-~~~~iIDvR~~~ef~~---ghIpg 106 (188)
....++...+. .+..+||+|+..+|.. |++++
T Consensus 152 sGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 152 SGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred ccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 34445555554 4688999999999973 55555
No 131
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=34.91 E-value=59 Score=28.74 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=28.7
Q ss_pred CCCcEEEEcCC---ChHHHHHHHHHHHCCCCceEe
Q 029759 136 KHDEIIVGCQS---GKRSMMAATDLLNAVSTHANY 167 (188)
Q Consensus 136 ~~~~ivv~C~s---G~~a~~a~~~L~~~G~~~v~l 167 (188)
+++.||++.+| |.++.+...+|+++|-+.|++
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHv 381 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHV 381 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEE
Confidence 57999999998 888999999999999988853
No 132
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=34.49 E-value=58 Score=29.74 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
++...||||.+-..+...+..|...|+....|.+|+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 4577899999988888999999999988667888763
No 133
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=34.19 E-value=76 Score=30.59 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=34.1
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHHhh
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTW 174 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~W 174 (188)
..++|++|.|.+-..|...+..|...|+.+..|.+...+.
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~ 481 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEK 481 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChH
Confidence 5789999999998889999999999999987777665543
No 134
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=33.70 E-value=98 Score=26.75 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=32.0
Q ss_pred HHHHHHhc-cCCCCcEEEEcCCChHHHHHHHHHHH--CCCCce-EecCcHHhhhh
Q 029759 126 FVEEVSTR-FRKHDEIIVGCQSGKRSMMAATDLLN--AVSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 126 ~l~~~~~~-l~~~~~ivv~C~sG~~a~~a~~~L~~--~G~~~v-~l~GG~~~W~~ 176 (188)
.+.+.+.. .++...-+++|+||..|..++-.|.. -|-+.+ .+.|++.+|..
T Consensus 90 ~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (433)
T PRK08117 90 KLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTL 144 (433)
T ss_pred HHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCH
Confidence 34444433 33444468889999888877766644 254555 68888877653
No 135
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=33.47 E-value=57 Score=21.25 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=15.9
Q ss_pred cEEEEcCCChHHH-HHHHH----HHHCCCC
Q 029759 139 EIIVGCQSGKRSM-MAATD----LLNAVST 163 (188)
Q Consensus 139 ~ivv~C~sG~~a~-~a~~~----L~~~G~~ 163 (188)
+++++|++|..+. ..... +...++.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~ 31 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGID 31 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 5899999996433 44444 4455664
No 136
>PRK06917 hypothetical protein; Provisional
Probab=33.08 E-value=1.2e+02 Score=26.50 Aligned_cols=43 Identities=7% Similarity=-0.214 Sum_probs=28.4
Q ss_pred cCCCCcEEEEcCCChHHHHHHHHHHH-----CCCC---ce-EecCcHHhhhh
Q 029759 134 FRKHDEIIVGCQSGKRSMMAATDLLN-----AVST---HA-NYPSKPLTWFL 176 (188)
Q Consensus 134 l~~~~~ivv~C~sG~~a~~a~~~L~~-----~G~~---~v-~l~GG~~~W~~ 176 (188)
.+.....+++|++|..|..+|.+|.. .|.+ .+ .+.||+.+|..
T Consensus 87 ~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~ 138 (447)
T PRK06917 87 SPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITM 138 (447)
T ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccH
Confidence 34333468999999888887776653 3543 34 57888877653
No 137
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=32.93 E-value=1.7e+02 Score=27.09 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCC----hHHHHHHHHHHHCCCCceEecCc
Q 029759 136 KHDEIIVGCQSG----KRSMMAATDLLNAVSTHANYPSK 170 (188)
Q Consensus 136 ~~~~ivv~C~sG----~~a~~a~~~L~~~G~~~v~l~GG 170 (188)
.+..|+++|.+. ..+..++..|+..|-..+++.|-
T Consensus 545 sga~i~viCssD~~Y~~~a~~~~~al~~ag~~~v~lAG~ 583 (619)
T TIGR00642 545 AGAQVAVLCSSDKVYAQQGLEVAKALKAAGAKALYLAGA 583 (619)
T ss_pred cCCCEEEEeCCCcchHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 567799999985 23556788899999886777764
No 138
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=32.88 E-value=99 Score=21.76 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=12.3
Q ss_pred cEEEEcCCC-hHHHHHHHHHHHCC
Q 029759 139 EIIVGCQSG-KRSMMAATDLLNAV 161 (188)
Q Consensus 139 ~ivv~C~sG-~~a~~a~~~L~~~G 161 (188)
+|+|+|... .||..|...|+.++
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~ 25 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLG 25 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhc
Confidence 456666432 45555555555544
No 139
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=32.68 E-value=66 Score=20.44 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=15.3
Q ss_pred cEEEEcCCChHH-HHHHHHHHH
Q 029759 139 EIIVGCQSGKRS-MMAATDLLN 159 (188)
Q Consensus 139 ~ivv~C~sG~~a-~~a~~~L~~ 159 (188)
.++++|++|..+ ......|++
T Consensus 2 kilivC~~G~~~s~~l~~~l~~ 23 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKK 23 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHH
Confidence 589999999654 456666665
No 140
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=32.63 E-value=1.5e+02 Score=19.76 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=25.9
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHCCCCceEec
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNAVSTHANYP 168 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~ 168 (188)
+-+|++-|..|..+..+...|+.+|.+.+.+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~~~~n 52 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDVIELN 52 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcEEEEe
Confidence 45799999999999999999999999765443
No 141
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=32.09 E-value=1e+02 Score=27.92 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=30.2
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
+.+.|+||.+-..+...+..|...|+....|.||++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 567899999988888899999999988777777754
No 142
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=32.08 E-value=1.1e+02 Score=22.89 Aligned_cols=48 Identities=15% Similarity=-0.032 Sum_probs=31.5
Q ss_pred HHHHhccCCCCcEEEEcCCC--hHHHHHHHHHHHC---CCCce-EecCcHHhhh
Q 029759 128 EEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLNA---VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 128 ~~~~~~l~~~~~ivv~C~sG--~~a~~a~~~L~~~---G~~~v-~l~GG~~~W~ 175 (188)
+.....++++..+|+.+..| .+|...+..|... |..++ .+.||-.++.
T Consensus 58 ~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~ 111 (157)
T PRK00103 58 ERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLS 111 (157)
T ss_pred HHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccC
Confidence 34445566666677777777 5688888877653 55456 6888865543
No 143
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=31.78 E-value=1.8e+02 Score=23.48 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=50.7
Q ss_pred cCHHHHHHHHhC----C-CEEEecCChhhHhcCCCCCeEEcCcc-cccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (188)
Q Consensus 75 i~~~~~~~~l~~----~-~~iIDvR~~~ef~~ghIpgAinip~~-~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~ 148 (188)
++.+++.+++.. | -.+|.|++.+|....---|+-.+-.+ .++. ..-.+.+...++...++++ +++++.||.
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~-t~~vd~~~~~~L~~~ip~~--~~~IsESGI 211 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLD-TFQIHQNLVEEVAAFLPPN--IVKVGESGI 211 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCc-cceECHHHHHHHHhhCCCC--cEEEEcCCC
Confidence 566677766642 3 78999999999874322233322221 1111 1122344555566656533 578889998
Q ss_pred HHHHHHHHHHHCCCCce
Q 029759 149 RSMMAATDLLNAVSTHA 165 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v 165 (188)
.+..-+..|... ++.+
T Consensus 212 ~t~~d~~~l~~~-~dav 227 (247)
T PRK13957 212 ESRSDLDKFRKL-VDAA 227 (247)
T ss_pred CCHHHHHHHHHh-CCEE
Confidence 877777777764 5544
No 144
>PRK07678 aminotransferase; Validated
Probab=31.59 E-value=97 Score=27.10 Aligned_cols=37 Identities=11% Similarity=-0.082 Sum_probs=25.4
Q ss_pred EEEEcCCChHHHHHHHHHHHC-----C---CCce-EecCcHHhhhh
Q 029759 140 IIVGCQSGKRSMMAATDLLNA-----V---STHA-NYPSKPLTWFL 176 (188)
Q Consensus 140 ivv~C~sG~~a~~a~~~L~~~-----G---~~~v-~l~GG~~~W~~ 176 (188)
-+++|++|..|..+|..|... | -+.+ .+.||+.+|..
T Consensus 107 ~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 107 VIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 588999998887766665432 3 2345 68888888753
No 145
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.41 E-value=2.1e+02 Score=21.15 Aligned_cols=38 Identities=11% Similarity=-0.090 Sum_probs=24.1
Q ss_pred cCCCCcEEEEcCC-C---hHHHHHHHHHHHCCCCce-EecCcH
Q 029759 134 FRKHDEIIVGCQS-G---KRSMMAATDLLNAVSTHA-NYPSKP 171 (188)
Q Consensus 134 l~~~~~ivv~C~s-G---~~a~~a~~~L~~~G~~~v-~l~GG~ 171 (188)
+..+-.+|.+|.- | .........|++.|.+.+ .+.||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 3456666777753 2 224467777888888877 477774
No 146
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=31.13 E-value=1e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=22.1
Q ss_pred CcEEEEcCCC-hHHHHHHHHHHHCCCCce-EecCcHHhh
Q 029759 138 DEIIVGCQSG-KRSMMAATDLLNAVSTHA-NYPSKPLTW 174 (188)
Q Consensus 138 ~~ivv~C~sG-~~a~~a~~~L~~~G~~~v-~l~GG~~~W 174 (188)
+.|+|+|.+. -||..|...|+...- .+ ....|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 4688888653 577777777776542 23 455555544
No 147
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=31.12 E-value=1.5e+02 Score=19.52 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHCCCCceEecCc-H
Q 029759 149 RSMMAATDLLNAVSTHANYPSK-P 171 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v~l~GG-~ 171 (188)
.-.+|++.|...|+++|.|.|- |
T Consensus 39 ~IQrAaRkLd~qGI~~V~L~G~~W 62 (77)
T PF12404_consen 39 AIQRAARKLDGQGIKNVALAGEGW 62 (77)
T ss_pred HHHHHHHHHhhCCCceEEEecCCc
Confidence 3568999999999999988874 5
No 148
>PRK06148 hypothetical protein; Provisional
Probab=30.97 E-value=1.1e+02 Score=30.04 Aligned_cols=43 Identities=14% Similarity=-0.084 Sum_probs=30.7
Q ss_pred cCCCCcEEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhhh
Q 029759 134 FRKHDEIIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 134 l~~~~~ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~~ 176 (188)
++.+-..+++|+||..|..+|.+|... |-+.+ .+.+|+.+|..
T Consensus 676 ~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 676 LPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 343335689999999988887777653 55555 68888888853
No 149
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.82 E-value=2e+02 Score=20.59 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=14.8
Q ss_pred CHHHHHHHHhC-CCEEEecCC---hhhHh
Q 029759 76 PVRVAHELLQA-GHRYLDVRT---PEEFS 100 (188)
Q Consensus 76 ~~~~~~~~l~~-~~~iIDvR~---~~ef~ 100 (188)
-..-+..+++. ++.++|... +++|.
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s~e~~v 46 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQTPEEIA 46 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 34445555654 588888763 55554
No 150
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=30.61 E-value=86 Score=27.30 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHH-CCC---C-ce-EecCcHH
Q 029759 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AVS---T-HA-NYPSKPL 172 (188)
Q Consensus 125 ~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~-~G~---~-~v-~l~GG~~ 172 (188)
..+.+.+..+.++..-||.|+||..|..+|..|.+ .++ + .+ ...+++.
T Consensus 87 ~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFH 140 (404)
T COG4992 87 AELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFH 140 (404)
T ss_pred HHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcC
Confidence 34444444443345569999999999988877644 444 2 23 4666654
No 151
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=30.42 E-value=89 Score=26.91 Aligned_cols=37 Identities=16% Similarity=-0.023 Sum_probs=31.0
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
...+++++|++-..+...+..|...|+....+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 3477899999988889999999999988778888753
No 152
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=30.34 E-value=81 Score=29.15 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=34.5
Q ss_pred HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
.+..+...+..+.+++|+|.+-.++...+..|...|+...++.|++.
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~ 481 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDID 481 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCC
Confidence 33333333456788999999988899999999999997656666544
No 153
>PRK10126 tyrosine phosphatase; Provisional
Probab=29.83 E-value=1e+02 Score=22.37 Aligned_cols=36 Identities=19% Similarity=0.062 Sum_probs=22.4
Q ss_pred CcEEEEcCCC-hHHHHHHHHHHHCCCCce-EecCcHHhh
Q 029759 138 DEIIVGCQSG-KRSMMAATDLLNAVSTHA-NYPSKPLTW 174 (188)
Q Consensus 138 ~~ivv~C~sG-~~a~~a~~~L~~~G~~~v-~l~GG~~~W 174 (188)
..|+|+|.+. -||..|...|+..+-+ + +...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~~-~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHPE-LKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCC-eEEEeeeccCC
Confidence 4688888753 5777777777776522 3 344455444
No 154
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=29.76 E-value=45 Score=29.52 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=34.3
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCCceEecCcH---------HhhhhCCCcccc
Q 029759 140 IIVGCQSGKRSMMAATDLLNAVSTHANYPSKP---------LTWFLSNQLLTE 183 (188)
Q Consensus 140 ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~---------~~W~~~g~p~~~ 183 (188)
=|+||..-....+.+-.|...|+..+-|..|+ ..|.+...|+..
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 58999987777889999999999877555454 579888888753
No 155
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=29.30 E-value=1.3e+02 Score=26.64 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=28.1
Q ss_pred cEEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~ 175 (188)
.-+.+|++|..|..++..|... |-+.+ .+.|++.+|.
T Consensus 156 ~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 156 EMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 4588999999998888777553 54555 6888888875
No 156
>KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=28.85 E-value=50 Score=27.98 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=40.4
Q ss_pred HHHHHHHHhccCCC---CcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHHhhhhCC-Ccccc
Q 029759 124 LKFVEEVSTRFRKH---DEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSN-QLLTE 183 (188)
Q Consensus 124 ~~~l~~~~~~l~~~---~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g-~p~~~ 183 (188)
+..-..+...++.. ..+=-+|.||+.+...+..-...|+..+.+.||+..-.... +++.+
T Consensus 69 paRQaalgAGlp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP~~~~~R 132 (396)
T KOG1390|consen 69 PARQAALGAGLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVPYLYVAR 132 (396)
T ss_pred hHHHHHhhcCCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCcchhhhc
Confidence 33444445556544 23334589999999888888889999999999987655543 34433
No 157
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=28.45 E-value=84 Score=27.34 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=30.0
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
..+++++|++-..+..++..|...|+....+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 456899999988899999999999988667778754
No 158
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=27.83 E-value=2.8e+02 Score=22.55 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred cCHHHHHHHHhC----C-CEEEecCChhhHhcCCCCCeEEcCcc-cccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (188)
Q Consensus 75 i~~~~~~~~l~~----~-~~iIDvR~~~ef~~ghIpgAinip~~-~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~ 148 (188)
++.+++.++.+. | -++|.|.+.+|.....--|+.-|-.+ .++ .....+.+....+...++++ ++++..||.
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL-~tf~vdl~~t~~la~~~p~~--~~~IsESGI 216 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDL-TTLEVDLETTEKLAPLIPKD--VILISESGI 216 (254)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCc-chheecHHHHHHHHhhCCCC--cEEEecCCC
Confidence 566666666542 3 78999999998774333344322211 111 11122334445555555555 578889999
Q ss_pred HHHHHHHHHHHCCCCce
Q 029759 149 RSMMAATDLLNAVSTHA 165 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v 165 (188)
.+..-...|...|.+.+
T Consensus 217 ~~~~dv~~l~~~ga~a~ 233 (254)
T COG0134 217 STPEDVRRLAKAGADAF 233 (254)
T ss_pred CCHHHHHHHHHcCCCEE
Confidence 98888999999988755
No 159
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=27.76 E-value=1.4e+02 Score=26.19 Aligned_cols=43 Identities=7% Similarity=-0.091 Sum_probs=28.6
Q ss_pred cCCCCcEEEEcCCChHHHHHHHHHHHC-----CCC---ce-EecCcHHhhhh
Q 029759 134 FRKHDEIIVGCQSGKRSMMAATDLLNA-----VST---HA-NYPSKPLTWFL 176 (188)
Q Consensus 134 l~~~~~ivv~C~sG~~a~~a~~~L~~~-----G~~---~v-~l~GG~~~W~~ 176 (188)
.+..-.-+++|+||..|..+|..|... |++ .+ .+.||+.+|..
T Consensus 112 ~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~ 163 (460)
T PRK06916 112 VPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTI 163 (460)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccH
Confidence 333334699999998888777766553 543 34 68888877653
No 160
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=27.70 E-value=71 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=20.1
Q ss_pred cEEEEcCCC-hHHHHHHHHHHHCCCC-ce-EecCcHHh
Q 029759 139 EIIVGCQSG-KRSMMAATDLLNAVST-HA-NYPSKPLT 173 (188)
Q Consensus 139 ~ivv~C~sG-~~a~~a~~~L~~~G~~-~v-~l~GG~~~ 173 (188)
+|+|+|.+. .||..|...++.+.-+ ++ .+..|...
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~ 39 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSG 39 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCC
Confidence 477777643 5666666666654332 44 45555544
No 161
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=27.66 E-value=1.4e+02 Score=26.11 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=27.0
Q ss_pred cEEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~ 175 (188)
.-|++|++|..|..++..|... |-..+ ...||+.+|.
T Consensus 111 ~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 111 HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 3588899998888877776553 54445 6788888875
No 162
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=27.56 E-value=2.5e+02 Score=22.64 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=47.1
Q ss_pred CHHHHHHHHhC----C-CEEEecCChhhHhcCCCCCeEEcCcc-cccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChH
Q 029759 76 PVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (188)
Q Consensus 76 ~~~~~~~~l~~----~-~~iIDvR~~~ef~~ghIpgAinip~~-~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~ 149 (188)
+.+++.++++. + ..++|+.+.+|.....=-|+-.+-.. .++. ....+.+...+....++. .+++++-+|..
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~-~~~~d~~~~~~l~~~~p~--~~~vIaegGI~ 221 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLK-TFEVDLETTERLAPLIPS--DRLVVSESGIF 221 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcc-cccCCHHHHHHHHHhCCC--CCEEEEEeCCC
Confidence 44555555532 3 67888888876642111122222111 0111 111223444555544432 24677778887
Q ss_pred HHHHHHHHHHCCCCceEe
Q 029759 150 SMMAATDLLNAVSTHANY 167 (188)
Q Consensus 150 a~~a~~~L~~~G~~~v~l 167 (188)
...-+..+...|++.+..
T Consensus 222 t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 222 TPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 777788888889986643
No 163
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=27.47 E-value=1.1e+02 Score=28.45 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=34.5
Q ss_pred HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
.+.++...+.++..+++.|.+-.++...+..|...|+...++.|++.
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~ 477 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEID 477 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCC
Confidence 33333333456788999999888899999999999987556666543
No 164
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=27.44 E-value=1.4e+02 Score=28.32 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.7
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCc
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSK 170 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG 170 (188)
.+++|+++.|.+-..+...+..|...|+....+.+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 578999999999888999999999999987777665
No 165
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=27.21 E-value=1.4e+02 Score=26.66 Aligned_cols=35 Identities=14% Similarity=-0.034 Sum_probs=30.1
Q ss_pred CcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 138 DEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 138 ~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
..+|+.|++...+...+..|...||....+.|++.
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~ 308 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLP 308 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 35899999989999999999999998778888754
No 166
>PRK07481 hypothetical protein; Provisional
Probab=27.07 E-value=1.5e+02 Score=26.00 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=27.4
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHC-----C---CCce-EecCcHHhhhh
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNA-----V---STHA-NYPSKPLTWFL 176 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~-----G---~~~v-~l~GG~~~W~~ 176 (188)
+-.-+++|.+|..|..+|.+|... | -..+ .+.||+.+|..
T Consensus 103 ~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 103 GMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred CCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 334588899998888777666442 3 2345 68888888764
No 167
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=26.59 E-value=1e+02 Score=26.44 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=29.3
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcH
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKP 171 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~ 171 (188)
...++++|++...+...+..|...|+....+.|++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~ 289 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDV 289 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 46789999988888889999999999866787775
No 168
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=26.58 E-value=1.5e+02 Score=26.00 Aligned_cols=38 Identities=11% Similarity=-0.058 Sum_probs=26.8
Q ss_pred cEEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~~ 176 (188)
.-+++|++|..|..+|..|... |-+.+ ...||+.+|..
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 154 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTL 154 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 4588899998888877776552 43445 57788877653
No 169
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.50 E-value=1e+02 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=29.7
Q ss_pred CCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
..+++|+|++-..+..++..|...|+....+.|++.
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~ 280 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKS 280 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 467899999988888899999999998667777753
No 170
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=26.28 E-value=58 Score=28.34 Aligned_cols=42 Identities=5% Similarity=-0.147 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCChH----------HHHHHHHHHHCCCCceEecCcHHhhhhC
Q 029759 136 KHDEIIVGCQSGKR----------SMMAATDLLNAVSTHANYPSKPLTWFLS 177 (188)
Q Consensus 136 ~~~~ivv~C~sG~~----------a~~a~~~L~~~G~~~v~l~GG~~~W~~~ 177 (188)
.++++.+||+-.-+ ....+..|+..|++-+.+.||+.++..+
T Consensus 30 ~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igD 81 (410)
T PRK13354 30 EGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGD 81 (410)
T ss_pred cCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCC
Confidence 46788999985422 2456667788999877899999887654
No 171
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=26.22 E-value=1.5e+02 Score=25.89 Aligned_cols=37 Identities=8% Similarity=-0.094 Sum_probs=26.6
Q ss_pred cEEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~ 175 (188)
.-|++|++|..|..++-.|... |-+.+ .+.|++.+|.
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 3588899998888877776442 54445 6888888774
No 172
>PRK07482 hypothetical protein; Provisional
Probab=26.17 E-value=1.8e+02 Score=25.58 Aligned_cols=50 Identities=6% Similarity=-0.249 Sum_probs=30.8
Q ss_pred HHHHHHhc-cCCCCcEEEEcCCChHHHHHHHHHHH-----CCCC---ce-EecCcHHhhh
Q 029759 126 FVEEVSTR-FRKHDEIIVGCQSGKRSMMAATDLLN-----AVST---HA-NYPSKPLTWF 175 (188)
Q Consensus 126 ~l~~~~~~-l~~~~~ivv~C~sG~~a~~a~~~L~~-----~G~~---~v-~l~GG~~~W~ 175 (188)
.+.+.+.+ .+.+-.-+++|++|..|..+|.++.. .|.+ .+ .+.||+.+|.
T Consensus 98 ~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 98 TLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred HHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 34444333 33333458889999888877766653 2543 34 5778888874
No 173
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=26.15 E-value=2e+02 Score=24.75 Aligned_cols=37 Identities=8% Similarity=-0.093 Sum_probs=24.9
Q ss_pred cEEEEcCCChHHHHHHHHHHHC-----C---CCce-EecCcHHhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA-----V---STHA-NYPSKPLTWF 175 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~-----G---~~~v-~l~GG~~~W~ 175 (188)
.-+++|.+|..|..+|.+|... | -+.+ .+.||+.+|.
T Consensus 103 ~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 103 DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 3578899998888777665431 3 3345 6888887764
No 174
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=26.14 E-value=1.9e+02 Score=26.48 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCceEec
Q 029759 117 GSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYP 168 (188)
Q Consensus 117 ~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~ 168 (188)
.+|.-.+.+.++.... .+..+|+.|+.|..+......++..|++.++.+
T Consensus 110 ~eGYGl~~~~i~~~~~---~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtD 158 (575)
T PRK11070 110 EDGYGLSPEVVDQAHA---RGAQLIVTVDNGISSHAGVAHAHALGIPVLVTD 158 (575)
T ss_pred cCCCCCCHHHHHHHHh---cCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 3566667777777653 345699999999999999999999999866443
No 175
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=25.93 E-value=1.1e+02 Score=29.90 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=30.8
Q ss_pred CCCcEEEEcCCChHHHHHHHHH-HHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDL-LNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L-~~~G~~~v~l~GG~~ 172 (188)
.+.++||+|.+...+......| ...|++.+.+.||++
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s 529 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS 529 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC
Confidence 3578999999988888899999 567998778888864
No 176
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=25.91 E-value=1.6e+02 Score=25.73 Aligned_cols=41 Identities=15% Similarity=-0.108 Sum_probs=26.7
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHC--------CCCce-EecCcHHhhh
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNA--------VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~--------G~~~v-~l~GG~~~W~ 175 (188)
+.+-.-|++|.+|..|..++.+|... |-.++ ...||+.+|.
T Consensus 103 p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 103 PGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 33334688999998887777665442 22345 6888888774
No 177
>PRK06062 hypothetical protein; Provisional
Probab=25.67 E-value=1.6e+02 Score=25.72 Aligned_cols=50 Identities=4% Similarity=-0.185 Sum_probs=31.2
Q ss_pred HHHHHHhc-cCCCCcEEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhh
Q 029759 126 FVEEVSTR-FRKHDEIIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 126 ~l~~~~~~-l~~~~~ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~ 175 (188)
.+.+.+.. .+.+-.-|++|.+|..|..+|.+|... |-..+ ...||+.+|.
T Consensus 99 ~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 99 EAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred HHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 33343333 333333588899998888877776543 54445 6888887774
No 178
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=25.64 E-value=98 Score=26.58 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=28.2
Q ss_pred cEEEEcCCChHH----------HHHHHHHHHCCCCceEecCcHHhhhhC
Q 029759 139 EIIVGCQSGKRS----------MMAATDLLNAVSTHANYPSKPLTWFLS 177 (188)
Q Consensus 139 ~ivv~C~sG~~a----------~~a~~~L~~~G~~~v~l~GG~~~W~~~ 177 (188)
++.+||+-.-++ ...+..|++.|++.+.+.||+.++..+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~~~~iligd~ta~igd 78 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGD 78 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccchhhcC
Confidence 678888743222 345667788999877888999998765
No 179
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=25.59 E-value=1.2e+02 Score=27.05 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecC
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPS 169 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~G 169 (188)
.+.+|||+.. |.....+|..|.+.|+.++ ++.|
T Consensus 20 ~~~kIvIIGA-G~AGLaAA~rLle~gf~~~~IlEa 53 (498)
T KOG0685|consen 20 GNAKIVIIGA-GIAGLAAATRLLENGFIDVLILEA 53 (498)
T ss_pred CCceEEEECC-chHHHHHHHHHHHhCCceEEEEEe
Confidence 3456777755 7777788999999999988 5654
No 180
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=25.58 E-value=1.5e+02 Score=25.87 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=26.5
Q ss_pred EEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhhh
Q 029759 140 IIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 140 ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~~ 176 (188)
-|++|++|..|..+|..|... |-..+ .+.||+.+|..
T Consensus 117 ~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 117 KVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 589999998888877766542 44445 67888877753
No 181
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=25.57 E-value=1.6e+02 Score=25.55 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=25.2
Q ss_pred cEEEEcCCChHHHHHHHHHHHC-------CCCce-EecCcHHhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA-------VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~-------G~~~v-~l~GG~~~W~ 175 (188)
.-+++|+||..|..+|..|... |-..+ .+.||+.+|.
T Consensus 104 ~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 104 ECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 4689999998887777665442 33344 6888887764
No 182
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.53 E-value=1e+02 Score=28.04 Aligned_cols=37 Identities=8% Similarity=-0.142 Sum_probs=30.5
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
...+++|+|++-..+..++..|...|+....+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4577999999988888999999999997667777643
No 183
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=25.10 E-value=76 Score=22.22 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=22.8
Q ss_pred ccCHHHHHHHHhCC--CEEEecCChhhHh
Q 029759 74 SVPVRVAHELLQAG--HRYLDVRTPEEFS 100 (188)
Q Consensus 74 ~i~~~~~~~~l~~~--~~iIDvR~~~ef~ 100 (188)
-|+.+++.+++.++ +.|+|+.+-++-.
T Consensus 19 YITLedi~~lV~~g~~f~V~DakTgeDiT 47 (107)
T TIGR01848 19 YVTLEDIRDLVREGREFQVVDSKSGDDLT 47 (107)
T ss_pred eeeHHHHHHHHHCCCeEEEEECCCCchhH
Confidence 58999999999876 9999999876643
No 184
>PRK05965 hypothetical protein; Provisional
Probab=25.00 E-value=1.9e+02 Score=25.33 Aligned_cols=49 Identities=4% Similarity=-0.141 Sum_probs=29.9
Q ss_pred HHHHHhc-cCCCCcEEEEcCCChHHHHHHHHHHH-C----CC---Cce-EecCcHHhhh
Q 029759 127 VEEVSTR-FRKHDEIIVGCQSGKRSMMAATDLLN-A----VS---THA-NYPSKPLTWF 175 (188)
Q Consensus 127 l~~~~~~-l~~~~~ivv~C~sG~~a~~a~~~L~~-~----G~---~~v-~l~GG~~~W~ 175 (188)
+.+.+.. .+.+-.-+++|++|..|..+|.+|.. + |. +.+ .+.+|+.+|.
T Consensus 95 lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 95 LAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 3443333 34344458889999888776666533 2 43 234 6888888775
No 185
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=24.58 E-value=1.8e+02 Score=17.87 Aligned_cols=40 Identities=3% Similarity=-0.224 Sum_probs=30.1
Q ss_pred HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v 165 (188)
.+.+.+..++.+..+.+..+..........++...||+-+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVV 55 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEE
Confidence 4455667777888888888877666778899999999754
No 186
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=24.40 E-value=94 Score=24.91 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=26.7
Q ss_pred cCCCCcEEEEcCCChHHHHHHHHHHHC------CCCce--EecCcHHhh
Q 029759 134 FRKHDEIIVGCQSGKRSMMAATDLLNA------VSTHA--NYPSKPLTW 174 (188)
Q Consensus 134 l~~~~~ivv~C~sG~~a~~a~~~L~~~------G~~~v--~l~GG~~~W 174 (188)
+.++++|++.+.+|..|...+..|... ||+-+ .++-|+.+|
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~ 74 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGF 74 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCC
Confidence 356678898889899988777776442 34422 456555444
No 187
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.07 E-value=1.3e+02 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=7.6
Q ss_pred EEcCCChHHHHHHHHHHH
Q 029759 142 VGCQSGKRSMMAATDLLN 159 (188)
Q Consensus 142 v~C~sG~~a~~a~~~L~~ 159 (188)
++|+.|..+...+..|..
T Consensus 2 vI~G~g~~~~~i~~~L~~ 19 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKE 19 (116)
T ss_dssp EEES-SHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHh
Confidence 344444444444444444
No 188
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=24.04 E-value=1e+02 Score=30.00 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=32.2
Q ss_pred hccCCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcH
Q 029759 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKP 171 (188)
Q Consensus 132 ~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~ 171 (188)
....++...||||.+-......+..|...|.....|..|+
T Consensus 480 ~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl 519 (941)
T KOG0351|consen 480 KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGL 519 (941)
T ss_pred hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCC
Confidence 3345678899999987777789999999997766777776
No 189
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.04 E-value=1.1e+02 Score=27.32 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=29.1
Q ss_pred CcEEEEcCCChHHHHHHHHHHHCCCCceEec-----Cc-HHhhhhCCCc
Q 029759 138 DEIIVGCQSGKRSMMAATDLLNAVSTHANYP-----SK-PLTWFLSNQL 180 (188)
Q Consensus 138 ~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~-----GG-~~~W~~~g~p 180 (188)
..|||+ +.|..-..||+.|...|++.++|+ || +..|...+.+
T Consensus 16 ~~VIVI-GAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~ 63 (501)
T KOG0029|consen 16 KKVIVI-GAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGD 63 (501)
T ss_pred CcEEEE-CCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCC
Confidence 455555 558888899999999999965554 55 4444444444
No 190
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=24.03 E-value=1.8e+02 Score=27.71 Aligned_cols=38 Identities=24% Similarity=0.110 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
.+.+|++|.|.+-..|...+..|...|+....+.+...
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~ 475 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNH 475 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcH
Confidence 46799999999988899999999999998777777654
No 191
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=23.92 E-value=1.7e+02 Score=18.81 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=11.4
Q ss_pred CCcEEEEcCCCh-HHH
Q 029759 137 HDEIIVGCQSGK-RSM 151 (188)
Q Consensus 137 ~~~ivv~C~sG~-~a~ 151 (188)
+.+|++.|..|. |+.
T Consensus 39 ~~pvlVHC~~G~gRtg 54 (105)
T smart00012 39 SGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCEEEEeCCCCChhh
Confidence 579999999873 444
No 192
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=23.92 E-value=1.7e+02 Score=18.81 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=11.4
Q ss_pred CCcEEEEcCCCh-HHH
Q 029759 137 HDEIIVGCQSGK-RSM 151 (188)
Q Consensus 137 ~~~ivv~C~sG~-~a~ 151 (188)
+.+|++.|..|. |+.
T Consensus 39 ~~pvlVHC~~G~gRtg 54 (105)
T smart00404 39 SGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCEEEEeCCCCChhh
Confidence 579999999873 444
No 193
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.71 E-value=2.6e+02 Score=19.44 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=15.8
Q ss_pred HHHHh-CCCEEEecCC---hhhHh---cCCCCCeEEcCc
Q 029759 81 HELLQ-AGHRYLDVRT---PEEFS---AGHATGAINVPY 112 (188)
Q Consensus 81 ~~~l~-~~~~iIDvR~---~~ef~---~ghIpgAinip~ 112 (188)
..+++ .++.+++... .+++. ..+=|..+-+..
T Consensus 20 ~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 20 ARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 33444 3577777764 33332 234444554443
No 194
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=23.50 E-value=1.9e+02 Score=25.04 Aligned_cols=46 Identities=11% Similarity=-0.049 Sum_probs=36.2
Q ss_pred HhccCCCCcEEEE---cCCChHHHHHHHHHHHCCCCceEecCcHHhhhh
Q 029759 131 STRFRKHDEIIVG---CQSGKRSMMAATDLLNAVSTHANYPSKPLTWFL 176 (188)
Q Consensus 131 ~~~l~~~~~ivv~---C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~~ 176 (188)
...++.+.|.+-+ |.||..+...+......|..++.+.||+.....
T Consensus 74 ~~Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~ 122 (401)
T PRK09050 74 LAGLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSR 122 (401)
T ss_pred HcCCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEeccccccc
Confidence 3336556676666 999999999999999999888888888876643
No 195
>PRK13530 arsenate reductase; Provisional
Probab=23.34 E-value=1.8e+02 Score=20.72 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=18.8
Q ss_pred CcEEEEcCCC-hHHHHHHHHHHHCCCCce-EecCcH
Q 029759 138 DEIIVGCQSG-KRSMMAATDLLNAVSTHA-NYPSKP 171 (188)
Q Consensus 138 ~~ivv~C~sG-~~a~~a~~~L~~~G~~~v-~l~GG~ 171 (188)
+.|+|+|.+. .||..|...++.+.-+++ ....|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 4577888643 566666666655432334 344443
No 196
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=23.33 E-value=1.5e+02 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHHh
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLT 173 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~ 173 (188)
.+++|++|.|.+-..|...+..|...|+...++.+...+
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~ 485 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHE 485 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccH
Confidence 568999999999888999999999999987777666544
No 197
>PRK00919 GMP synthase subunit B; Validated
Probab=23.30 E-value=2.3e+02 Score=23.68 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=25.8
Q ss_pred CCcEEEEcCCChHHHHHHHHHHH-CCCCce--EecCcH
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLN-AVSTHA--NYPSKP 171 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~-~G~~~v--~l~GG~ 171 (188)
+.++++...+|..|..++..+.+ .|++-+ ..+.|+
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~ 58 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGL 58 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCC
Confidence 36778888889999988888866 587633 566665
No 198
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=23.27 E-value=1.9e+02 Score=25.22 Aligned_cols=37 Identities=14% Similarity=-0.035 Sum_probs=26.1
Q ss_pred cEEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~ 175 (188)
.-|++|++|..|..++.+|... |-+.+ .+.||+.+|.
T Consensus 102 ~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 102 PKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 3588999998888877776542 44445 5777777764
No 199
>PRK08297 L-lysine aminotransferase; Provisional
Probab=23.01 E-value=2.2e+02 Score=24.88 Aligned_cols=40 Identities=8% Similarity=-0.145 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHH---------CCC-----Cce-EecCcHHhhh
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLN---------AVS-----THA-NYPSKPLTWF 175 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~---------~G~-----~~v-~l~GG~~~W~ 175 (188)
++-.-|++|+||..|..+|.+|.. .|. ..+ ...||+.+|.
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t 162 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRS 162 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcc
Confidence 344468999999888877766652 365 235 5888877764
No 200
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=22.86 E-value=1.2e+02 Score=19.10 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.1
Q ss_pred cCCCCcEEEEcCCChHHHHHHHHHHH
Q 029759 134 FRKHDEIIVGCQSGKRSMMAATDLLN 159 (188)
Q Consensus 134 l~~~~~ivv~C~sG~~a~~a~~~L~~ 159 (188)
+..+..|.++|.+...+......+++
T Consensus 44 IAgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 44 IAGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEESSEEEEEESTTSHHHHHHHHHHT
T ss_pred EeCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 34578899999999888888887765
No 201
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.82 E-value=2e+02 Score=17.88 Aligned_cols=40 Identities=10% Similarity=-0.100 Sum_probs=30.0
Q ss_pred HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v 165 (188)
.....+..+..+..+.+.++........-.+++..||+-+
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~ 54 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVL 54 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEE
Confidence 3455566677788888888876666778888899999855
No 202
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=22.82 E-value=2.5e+02 Score=20.80 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhccCCCCcEEEEcCCChHHH---HHHHHHHHCCCCceEecCc
Q 029759 121 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM---MAATDLLNAVSTHANYPSK 170 (188)
Q Consensus 121 ~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~---~a~~~L~~~G~~~v~l~GG 170 (188)
.+|+..++.....+.. ...-++|.+|.-+. .....|...|.. ++|.|-
T Consensus 24 vENp~Vf~~~~~~~~~-~~~pLVCt~G~p~~A~~~LL~~L~~~g~~-l~y~GD 74 (152)
T PF09664_consen 24 VENPAVFSALADELGA-SCPPLVCTSGQPSAAARRLLDRLAAAGAR-LYYSGD 74 (152)
T ss_pred EecHHHHHHHHHhcCC-CCCeEEEcCCcHHHHHHHHHHHHHhCCCE-EEEecC
Confidence 3477888888777644 34467777775433 334445555643 456554
No 203
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=22.65 E-value=1.7e+02 Score=25.36 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=35.7
Q ss_pred HHhccCCCCcEEEE---cCCChHHHHHHHHHHHCCCCceEecCcHHhhh
Q 029759 130 VSTRFRKHDEIIVG---CQSGKRSMMAATDLLNAVSTHANYPSKPLTWF 175 (188)
Q Consensus 130 ~~~~l~~~~~ivv~---C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~ 175 (188)
....++.+.|.+-+ |.||.++...+......|...+.+.||.....
T Consensus 73 l~~Gl~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS 121 (400)
T PRK13359 73 LLAGLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMS 121 (400)
T ss_pred HHcCCCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccC
Confidence 34446666666655 99999999999999999998888888876543
No 204
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.60 E-value=1.1e+02 Score=26.92 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=22.1
Q ss_pred EEEEcCCChH---HHHHHHHHHHCCCCce-Eec
Q 029759 140 IIVGCQSGKR---SMMAATDLLNAVSTHA-NYP 168 (188)
Q Consensus 140 ivv~C~sG~~---a~~a~~~L~~~G~~~v-~l~ 168 (188)
|.+.|+.|+. ...+++.|...||..+ +|.
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~p 301 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYYP 301 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEee
Confidence 7888887643 4568899999999876 553
No 205
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.53 E-value=2e+02 Score=17.80 Aligned_cols=40 Identities=5% Similarity=-0.050 Sum_probs=29.3
Q ss_pred HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v 165 (188)
.+...+..+..+..+.+..+..........+.+..||+-+
T Consensus 15 ~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~ 54 (69)
T cd03423 15 MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELL 54 (69)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEE
Confidence 3455566677777777777766666678888999999855
No 206
>PRK07483 hypothetical protein; Provisional
Probab=22.21 E-value=2.6e+02 Score=24.43 Aligned_cols=50 Identities=12% Similarity=-0.085 Sum_probs=29.4
Q ss_pred HHHHHHhc-cCCCCcEEEEcCCChHHHHHHHHHHH-----CC---CCce-EecCcHHhhh
Q 029759 126 FVEEVSTR-FRKHDEIIVGCQSGKRSMMAATDLLN-----AV---STHA-NYPSKPLTWF 175 (188)
Q Consensus 126 ~l~~~~~~-l~~~~~ivv~C~sG~~a~~a~~~L~~-----~G---~~~v-~l~GG~~~W~ 175 (188)
.+.+.+.. .+.+-.-+++|++|..|..++.+|.. .| -..+ ...+++.+|.
T Consensus 77 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t 136 (443)
T PRK07483 77 ALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNT 136 (443)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcC
Confidence 34343333 33333458889999887776665543 23 2334 5788887774
No 207
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=22.17 E-value=1.5e+02 Score=25.45 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=35.9
Q ss_pred hccCCCCcEEEE---cCCChHHHHHHHHHHHCCCCceEecCcHHhhh
Q 029759 132 TRFRKHDEIIVG---CQSGKRSMMAATDLLNAVSTHANYPSKPLTWF 175 (188)
Q Consensus 132 ~~l~~~~~ivv~---C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~ 175 (188)
..++.+.|.+-+ |.||..+...+......|.-++.+.||.....
T Consensus 74 ~gl~~~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS 120 (390)
T PRK06504 74 SKLPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMT 120 (390)
T ss_pred cCCCCCCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecC
Confidence 346556776666 99999999999999999998898888877654
No 208
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=22.08 E-value=1.9e+02 Score=25.40 Aligned_cols=42 Identities=21% Similarity=0.023 Sum_probs=27.1
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHC-----CCCce-EecCcHHhhhh
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNA-----VSTHA-NYPSKPLTWFL 176 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~-----G~~~v-~l~GG~~~W~~ 176 (188)
+.+-.-+++|++|..|..+|.+|... |-..+ ...||+.+|..
T Consensus 138 p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~ 185 (459)
T PRK11522 138 PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSL 185 (459)
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcH
Confidence 33334688899998888777665542 32234 57888887753
No 209
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.00 E-value=1.1e+02 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=17.8
Q ss_pred CcEEEEcCCChHHHHHHHHHH----HCCCC
Q 029759 138 DEIIVGCQSGKRSMMAATDLL----NAVST 163 (188)
Q Consensus 138 ~~ivv~C~sG~~a~~a~~~L~----~~G~~ 163 (188)
+.|.++|..|......+..++ ..|.+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~ 31 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKD 31 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCc
Confidence 468999999977666555544 34655
No 210
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=21.93 E-value=2.4e+02 Score=26.86 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHHh
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLT 173 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~ 173 (188)
.+.++++|.|.+-..+......|...|+....+.|....
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~ 460 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAA 460 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChH
Confidence 457899999999888889999999999997777776554
No 211
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=21.76 E-value=1.8e+02 Score=18.90 Aligned_cols=29 Identities=21% Similarity=-0.001 Sum_probs=19.8
Q ss_pred CCcEEEEcCCC--hHHHHHHHHHHHCCCCce
Q 029759 137 HDEIIVGCQSG--KRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 137 ~~~ivv~C~sG--~~a~~a~~~L~~~G~~~v 165 (188)
+-+|-|+-++| ..+..++..|+..||+.+
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~ 33 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVV 33 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCcee
Confidence 34566665555 347788888888888754
No 212
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.72 E-value=2e+02 Score=25.97 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
++.++||+|..-..+...+..|+..||..+.+.|..+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~s 376 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKS 376 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCcceeeeccccc
Confidence 4567999999988899999999999988777887654
No 213
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.41 E-value=82 Score=22.06 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=14.7
Q ss_pred HHHHHHHHhC-C-CEEEecCChhh
Q 029759 77 VRVAHELLQA-G-HRYLDVRTPEE 98 (188)
Q Consensus 77 ~~~~~~~l~~-~-~~iIDvR~~~e 98 (188)
.+++.+.+.. + -+|||||....
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~ 25 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPR 25 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCC
Confidence 4566666654 4 69999997443
No 214
>PRK07036 hypothetical protein; Provisional
Probab=21.32 E-value=2.5e+02 Score=24.72 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=27.1
Q ss_pred cCCCCcEEEEcCCChHHHHHHHHHHH-----CCC---Cce-EecCcHHhhh
Q 029759 134 FRKHDEIIVGCQSGKRSMMAATDLLN-----AVS---THA-NYPSKPLTWF 175 (188)
Q Consensus 134 l~~~~~ivv~C~sG~~a~~a~~~L~~-----~G~---~~v-~l~GG~~~W~ 175 (188)
.+.+-.-|++|++|..|..+|.+|.. .|. +.| .+.|++.+|.
T Consensus 108 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 108 APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 33334468899999888777666543 142 345 6788887765
No 215
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=21.17 E-value=2.3e+02 Score=24.94 Aligned_cols=39 Identities=5% Similarity=-0.162 Sum_probs=26.4
Q ss_pred CCcEEEEcCCChHHHHHHHHHHH-----CCC---Cce-EecCcHHhhh
Q 029759 137 HDEIIVGCQSGKRSMMAATDLLN-----AVS---THA-NYPSKPLTWF 175 (188)
Q Consensus 137 ~~~ivv~C~sG~~a~~a~~~L~~-----~G~---~~v-~l~GG~~~W~ 175 (188)
+-.-|++|++|..|..+|..|.. .|. ..+ .+.||+.+|.
T Consensus 106 ~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 106 GLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 33468999999888877766642 254 234 6888887764
No 216
>PRK11018 hypothetical protein; Provisional
Probab=21.12 E-value=2.4e+02 Score=18.10 Aligned_cols=40 Identities=15% Similarity=-0.031 Sum_probs=29.8
Q ss_pred HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165 (188)
Q Consensus 126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v 165 (188)
.....+..++.+..+.+.++..........+++..||+-+
T Consensus 24 ~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~ 63 (78)
T PRK11018 24 ATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVL 63 (78)
T ss_pred HHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEE
Confidence 3455566677788788888876666678888899999855
No 217
>PRK06541 hypothetical protein; Provisional
Probab=21.10 E-value=2.3e+02 Score=24.95 Aligned_cols=38 Identities=8% Similarity=-0.093 Sum_probs=25.4
Q ss_pred cEEEEcCCChHHHHHHHHHHHC-----C---CCce-EecCcHHhhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLNA-----V---STHA-NYPSKPLTWFL 176 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~~-----G---~~~v-~l~GG~~~W~~ 176 (188)
.-+++|.+|..|..++..|... | -..+ .+.||+.+|..
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 159 (460)
T PRK06541 113 NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQ 159 (460)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcch
Confidence 3588899998888777665442 3 2344 67888777653
No 218
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=20.94 E-value=2.1e+02 Score=27.26 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
.+.++++|.|.+-..+...+..|...|+....+.|...
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 35789999999988899999999999998777777644
No 219
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=20.84 E-value=3.1e+02 Score=24.26 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=49.5
Q ss_pred cCHHHHHHHHhC----C-CEEEecCChhhHhcCCCCCeEEcCcc-cccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (188)
Q Consensus 75 i~~~~~~~~l~~----~-~~iIDvR~~~ef~~ghIpgAinip~~-~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~ 148 (188)
++.+++.++++. + -.+|.|++.+|....-=-|+-.+-.+ .++. ..-.+.+...++...+++ .+++++.||.
T Consensus 143 L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~-t~~vd~~~~~~l~~~ip~--~~~~vseSGI 219 (454)
T PRK09427 143 LDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLR-DLSIDLNRTRELAPLIPA--DVIVISESGI 219 (454)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCc-cceECHHHHHHHHhhCCC--CcEEEEeCCC
Confidence 566666666642 3 78999999999874211133222211 1111 111234455555555653 4678889998
Q ss_pred HHHHHHHHHHHCCCCce
Q 029759 149 RSMMAATDLLNAVSTHA 165 (188)
Q Consensus 149 ~a~~a~~~L~~~G~~~v 165 (188)
....-...|.. |++.+
T Consensus 220 ~t~~d~~~~~~-~~dav 235 (454)
T PRK09427 220 YTHAQVRELSP-FANGF 235 (454)
T ss_pred CCHHHHHHHHh-cCCEE
Confidence 77666666765 66654
No 220
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=20.64 E-value=1.8e+02 Score=22.75 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=6.3
Q ss_pred CcEEEEcCCC
Q 029759 138 DEIIVGCQSG 147 (188)
Q Consensus 138 ~~ivv~C~sG 147 (188)
.++++||+|+
T Consensus 15 ~~i~V~~gs~ 24 (205)
T COG1611 15 RQIVVICGSA 24 (205)
T ss_pred ceEEEEEeCC
Confidence 5566666664
No 221
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=20.63 E-value=2.3e+02 Score=24.89 Aligned_cols=50 Identities=10% Similarity=-0.106 Sum_probs=31.3
Q ss_pred HHHHHHhcc-CCCCcEEEEcCCChHHHHHHHHHHH--CCCCce-EecCcHHhhh
Q 029759 126 FVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLN--AVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 126 ~l~~~~~~l-~~~~~ivv~C~sG~~a~~a~~~L~~--~G~~~v-~l~GG~~~W~ 175 (188)
.+.+.+..+ +....-+++|++|..|..++..|.. -|-.++ .+.+|+.+|.
T Consensus 117 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 117 ECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred HHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 344444333 3333468899999988887777654 254445 6777777764
No 222
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=20.60 E-value=2.3e+02 Score=24.51 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=35.4
Q ss_pred ccCCCCcEEEE---cCCChHHHHHHHHHHHCCCCceEecCcHHhhhh
Q 029759 133 RFRKHDEIIVG---CQSGKRSMMAATDLLNAVSTHANYPSKPLTWFL 176 (188)
Q Consensus 133 ~l~~~~~ivv~---C~sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~~ 176 (188)
.++.+.|.+-+ |.||..|...+......|..++.+.||+..+..
T Consensus 75 Gl~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~ 121 (400)
T TIGR02430 75 GLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSR 121 (400)
T ss_pred CCCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccC
Confidence 35555676666 999999999999999999888988888876643
No 223
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=20.59 E-value=2.1e+02 Score=27.44 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcH
Q 029759 135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKP 171 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~ 171 (188)
.+.+|++|.|.+-..|...+..|...|+....+.+.-
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnakq 464 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKN 464 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCch
Confidence 4679999999998889999999999999877776643
No 224
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=20.58 E-value=1.6e+02 Score=26.16 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCCcEEEEcCC---ChHHHHHHHHHHHCCCCceE
Q 029759 136 KHDEIIVGCQS---GKRSMMAATDLLNAVSTHAN 166 (188)
Q Consensus 136 ~~~~ivv~C~s---G~~a~~a~~~L~~~G~~~v~ 166 (188)
++++|+++.++ |.++..++..|++.|-+.|+
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~ 380 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVH 380 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEE
Confidence 46889999886 88899999999999998873
No 225
>PRK07046 aminotransferase; Validated
Probab=20.56 E-value=1.1e+02 Score=26.94 Aligned_cols=36 Identities=3% Similarity=-0.222 Sum_probs=26.8
Q ss_pred EEEEcCCChHHHHHHHHHHHC--CCCce-EecCcHHhhh
Q 029759 140 IIVGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 175 (188)
Q Consensus 140 ivv~C~sG~~a~~a~~~L~~~--G~~~v-~l~GG~~~W~ 175 (188)
-+.+|+||..|..++..|... |-+.+ ...|++.+|.
T Consensus 132 ~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 132 YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 478899999888877776553 54555 6888888873
No 226
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=20.44 E-value=2.3e+02 Score=21.07 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=29.2
Q ss_pred HHHHhccCCCCcEEEEcCCC--hHHHHHHHHHHH---CCCCce-EecCcHHhh
Q 029759 128 EEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLN---AVSTHA-NYPSKPLTW 174 (188)
Q Consensus 128 ~~~~~~l~~~~~ivv~C~sG--~~a~~a~~~L~~---~G~~~v-~l~GG~~~W 174 (188)
+.....++ +..+|+.+..| ..|...+..|.. .| .++ .+.||-.++
T Consensus 57 ~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 57 DRILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 34455565 45667777777 567888888874 45 456 688886554
No 227
>COG1204 Superfamily II helicase [General function prediction only]
Probab=20.39 E-value=3.6e+02 Score=25.67 Aligned_cols=84 Identities=15% Similarity=-0.035 Sum_probs=53.1
Q ss_pred CHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHH
Q 029759 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT 155 (188)
Q Consensus 76 ~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~ 155 (188)
...++.++++.+...-|.|+..-+..-...+++-..-...-......+...+......+..+.+++++|.+-..+...|.
T Consensus 192 N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~ 271 (766)
T COG1204 192 NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAK 271 (766)
T ss_pred CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHH
Confidence 57788888887755778888777776555555443321100011122334455555557778889999999877777777
Q ss_pred HHHH
Q 029759 156 DLLN 159 (188)
Q Consensus 156 ~L~~ 159 (188)
.|..
T Consensus 272 ~l~~ 275 (766)
T COG1204 272 KLRI 275 (766)
T ss_pred HHHH
Confidence 7763
No 228
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=20.22 E-value=2.1e+02 Score=26.38 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=20.2
Q ss_pred CCCCcEEEEcCCChHH-HH----HHHHHHHCCCC
Q 029759 135 RKHDEIIVGCQSGKRS-MM----AATDLLNAVST 163 (188)
Q Consensus 135 ~~~~~ivv~C~sG~~a-~~----a~~~L~~~G~~ 163 (188)
.+..+|++.|++|.-+ .. .-..|++.|++
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~ 537 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIP 537 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCCC
Confidence 3556799999999543 33 33457788986
No 229
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=20.02 E-value=1.4e+02 Score=19.60 Aligned_cols=35 Identities=6% Similarity=-0.136 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759 136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172 (188)
Q Consensus 136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~ 172 (188)
.+.||++.- ... .......|...+.+++++.||-.
T Consensus 49 ~~~PIll~~-~~l-~~~~~~~l~~~~~~~v~iiGg~~ 83 (92)
T PF04122_consen 49 NNAPILLVN-NSL-PSSVKAFLKSLNIKKVYIIGGEG 83 (92)
T ss_pred cCCeEEEEC-CCC-CHHHHHHHHHcCCCEEEEECCCC
Confidence 467755554 333 36677788888888887778754
No 230
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=20.00 E-value=2.6e+02 Score=24.41 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=26.4
Q ss_pred cEEEEcCCChHHHHHHHHHHH--CCCCce-EecCcHHhhh
Q 029759 139 EIIVGCQSGKRSMMAATDLLN--AVSTHA-NYPSKPLTWF 175 (188)
Q Consensus 139 ~ivv~C~sG~~a~~a~~~L~~--~G~~~v-~l~GG~~~W~ 175 (188)
.-|++|++|..|..+|.+|.. -|-+.+ .+.||+.+|.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 468999999888877766544 254445 6788887775
Done!