Query 029760
Match_columns 188
No_of_seqs 188 out of 1190
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0157 NadC Nicotinate-nucleo 100.0 4.7E-48 1E-52 336.4 17.4 142 46-188 2-145 (280)
2 PLN02716 nicotinate-nucleotide 100.0 1.7E-47 3.7E-52 337.8 19.3 152 37-188 6-157 (308)
3 PRK06106 nicotinate-nucleotide 100.0 3.4E-47 7.4E-52 332.6 19.0 144 45-188 6-151 (281)
4 PRK07428 nicotinate-nucleotide 100.0 6.6E-47 1.4E-51 331.7 18.8 149 36-188 2-153 (288)
5 PRK06543 nicotinate-nucleotide 100.0 7.8E-47 1.7E-51 330.3 18.5 140 48-188 5-146 (281)
6 PRK06559 nicotinate-nucleotide 100.0 3.5E-46 7.6E-51 327.3 18.8 145 43-188 6-154 (290)
7 PRK06978 nicotinate-nucleotide 100.0 3.2E-46 6.9E-51 328.1 18.2 138 49-188 24-163 (294)
8 PRK08072 nicotinate-nucleotide 100.0 1E-45 2.2E-50 322.6 17.9 139 49-188 5-145 (277)
9 PRK06096 molybdenum transport 100.0 1.8E-45 3.9E-50 322.2 17.5 136 50-188 5-144 (284)
10 PRK05742 nicotinate-nucleotide 100.0 3.5E-45 7.7E-50 319.3 18.2 139 48-188 7-147 (277)
11 PRK07896 nicotinate-nucleotide 100.0 6.3E-45 1.4E-49 319.4 18.9 148 40-188 5-157 (289)
12 TIGR01334 modD putative molybd 100.0 5.3E-45 1.2E-49 318.3 17.5 136 50-188 4-143 (277)
13 PRK09016 quinolinate phosphori 100.0 1.7E-44 3.6E-49 317.5 18.2 140 48-188 21-166 (296)
14 cd01572 QPRTase Quinolinate ph 100.0 1.4E-44 3.1E-49 313.6 17.4 136 52-188 2-139 (268)
15 cd01573 modD_like ModD; Quinol 100.0 2E-44 4.3E-49 313.3 17.0 134 52-188 2-139 (272)
16 PRK08385 nicotinate-nucleotide 100.0 3.1E-44 6.7E-49 313.6 17.0 134 52-188 4-141 (278)
17 TIGR00078 nadC nicotinate-nucl 100.0 2.9E-44 6.3E-49 311.4 16.5 133 53-188 1-135 (265)
18 PRK05848 nicotinate-nucleotide 100.0 7.2E-44 1.6E-48 310.5 17.6 136 49-188 2-139 (273)
19 cd01568 QPRTase_NadC Quinolina 100.0 1.4E-43 3E-48 307.1 16.7 135 52-188 2-138 (269)
20 KOG3008 Quinolinate phosphorib 100.0 1.8E-39 3.9E-44 276.7 9.3 148 34-188 3-154 (300)
21 PRK08662 nicotinate phosphorib 100.0 2.1E-34 4.7E-39 257.8 13.7 131 52-188 10-150 (343)
22 cd01571 NAPRTase_B Nicotinate 100.0 1.7E-31 3.7E-36 235.2 9.6 121 65-188 7-133 (302)
23 PF02749 QRPTase_N: Quinolinat 100.0 3.4E-29 7.3E-34 184.3 9.6 88 62-152 1-88 (88)
24 cd00516 PRTase_typeII Phosphor 100.0 6.6E-28 1.4E-32 207.6 14.7 122 67-188 1-133 (281)
25 PRK07188 nicotinate phosphorib 99.9 2.3E-27 4.9E-32 213.4 15.0 112 77-188 36-152 (352)
26 PRK09243 nicotinate phosphorib 99.1 4.7E-10 1E-14 104.6 11.9 120 56-179 9-167 (464)
27 cd01570 NAPRTase_A Nicotinate 99.1 9.6E-10 2.1E-14 98.3 12.2 103 76-179 21-158 (327)
28 cd01567 NAPRTase_PncB Nicotina 98.9 1.8E-08 3.9E-13 90.0 11.1 103 76-179 20-169 (343)
29 TIGR01513 NAPRTase_put putativ 98.6 4.1E-07 9E-12 84.7 11.9 101 77-178 22-157 (443)
30 PRK12484 nicotinate phosphorib 98.5 7.4E-07 1.6E-11 83.0 11.6 99 78-177 26-159 (443)
31 COG1488 PncB Nicotinic acid ph 98.5 8.8E-07 1.9E-11 81.7 11.1 127 49-179 6-170 (405)
32 PRK09198 putative nicotinate p 98.0 4.9E-05 1.1E-09 71.4 10.7 70 96-166 83-158 (463)
33 PLN02885 nicotinate phosphorib 97.8 0.00032 6.9E-09 67.2 11.7 99 77-176 33-170 (545)
34 cd01569 PBEF_like pre-B-cell c 97.7 0.00028 6E-09 65.4 9.8 70 96-166 81-156 (407)
35 PHA02594 nadV nicotinamide pho 97.6 0.00033 7.1E-09 66.0 9.1 57 109-166 101-161 (470)
36 cd01401 PncB_like Nicotinate p 96.1 0.028 6.2E-07 51.7 8.4 63 116-178 88-176 (377)
37 PRK05321 nicotinate phosphorib 94.7 0.23 4.9E-06 46.2 9.3 54 124-177 106-178 (400)
38 PF13533 Biotin_lipoyl_2: Biot 93.2 0.096 2.1E-06 34.5 2.8 25 111-135 14-38 (50)
39 TIGR01514 NAPRTase nicotinate 91.1 1 2.2E-05 41.9 7.9 54 123-176 101-178 (394)
40 PF07831 PYNP_C: Pyrimidine nu 90.0 0.88 1.9E-05 32.6 5.1 41 105-145 28-69 (75)
41 PF00364 Biotin_lipoyl: Biotin 89.9 0.34 7.4E-06 34.1 2.9 23 111-133 18-40 (74)
42 PRK05889 putative acetyl-CoA c 89.2 0.51 1.1E-05 32.7 3.4 26 109-134 12-37 (71)
43 PRK06748 hypothetical protein; 89.1 0.51 1.1E-05 34.8 3.4 24 109-132 14-37 (83)
44 PRK08225 acetyl-CoA carboxylas 83.7 1.6 3.4E-05 30.0 3.4 24 110-133 12-35 (70)
45 PF10011 DUF2254: Predicted me 82.5 13 0.00028 33.9 9.7 48 82-131 196-245 (371)
46 PRK14875 acetoin dehydrogenase 81.9 1.6 3.6E-05 37.6 3.6 23 111-133 20-42 (371)
47 COG0508 AceF Pyruvate/2-oxoglu 81.4 1.5 3.2E-05 40.7 3.3 24 110-133 19-42 (404)
48 cd06850 biotinyl_domain The bi 80.7 2.2 4.8E-05 27.9 3.1 23 110-132 9-32 (67)
49 PRK05820 deoA thymidine phosph 80.0 19 0.00041 34.1 10.1 61 77-137 336-409 (440)
50 TIGR02644 Y_phosphoryl pyrimid 77.6 16 0.00034 34.3 8.7 60 77-136 329-401 (405)
51 PRK06078 pyrimidine-nucleoside 77.3 35 0.00075 32.3 11.0 60 77-136 331-403 (434)
52 KOG0557 Dihydrolipoamide acety 77.0 2.1 4.5E-05 40.8 2.8 25 110-134 55-79 (470)
53 COG0511 AccB Biotin carboxyl c 76.9 2.9 6.3E-05 33.2 3.2 19 113-131 84-102 (140)
54 TIGR02645 ARCH_P_rylase putati 76.3 24 0.00052 34.0 9.7 63 77-139 409-477 (493)
55 TIGR02643 T_phosphoryl thymidi 73.6 15 0.00032 34.8 7.5 61 77-137 335-408 (437)
56 cd06663 Biotinyl_lipoyl_domain 73.4 6.4 0.00014 26.8 3.9 25 109-133 15-39 (73)
57 TIGR03327 AMP_phos AMP phospho 73.1 32 0.00069 33.2 9.7 62 77-138 410-477 (500)
58 PRK04350 thymidine phosphoryla 73.1 28 0.0006 33.5 9.3 62 77-138 401-468 (490)
59 PRK05641 putative acetyl-CoA c 72.5 4.4 9.5E-05 32.9 3.3 23 111-133 96-118 (153)
60 PF00529 HlyD: HlyD family sec 72.3 2.5 5.3E-05 35.8 1.9 26 109-134 11-36 (305)
61 PRK08225 acetyl-CoA carboxylas 71.9 4.8 0.0001 27.5 3.0 21 111-131 50-70 (70)
62 PTZ00144 dihydrolipoamide succ 71.7 4.4 9.4E-05 38.0 3.5 21 111-131 62-82 (418)
63 cd06850 biotinyl_domain The bi 70.8 12 0.00025 24.3 4.6 33 80-130 35-67 (67)
64 PRK06549 acetyl-CoA carboxylas 68.7 6.2 0.00013 31.3 3.4 21 112-132 74-94 (130)
65 TIGR00830 PTBA PTS system, glu 67.3 6.3 0.00014 30.9 3.1 22 110-131 81-102 (121)
66 KOG2511 Nicotinic acid phospho 67.1 3.1 6.8E-05 38.6 1.5 65 101-165 87-151 (420)
67 PLN02226 2-oxoglutarate dehydr 67.0 6.1 0.00013 37.6 3.5 19 113-131 148-166 (463)
68 PF12700 HlyD_2: HlyD family s 66.4 6.6 0.00014 33.5 3.4 26 110-135 31-56 (328)
69 COG0213 DeoA Thymidine phospho 66.0 33 0.00071 32.6 8.0 62 77-138 332-406 (435)
70 TIGR02971 heterocyst_DevB ABC 65.2 21 0.00045 31.1 6.3 24 111-134 28-51 (327)
71 cd06848 GCS_H Glycine cleavage 64.8 18 0.00038 26.5 4.9 30 103-133 26-55 (96)
72 TIGR01347 sucB 2-oxoglutarate 64.0 7.9 0.00017 36.0 3.6 19 113-131 57-75 (403)
73 cd00210 PTS_IIA_glc PTS_IIA, P 63.2 8.3 0.00018 30.3 3.1 22 110-131 81-102 (124)
74 PRK05704 dihydrolipoamide succ 59.9 9.5 0.00021 35.4 3.3 20 113-132 59-78 (407)
75 PRK09439 PTS system glucose-sp 59.7 9.9 0.00021 31.4 3.1 22 110-131 103-124 (169)
76 PRK07051 hypothetical protein; 59.1 14 0.0003 26.2 3.4 20 112-131 60-79 (80)
77 PF00358 PTS_EIIA_1: phosphoen 58.9 8.2 0.00018 30.6 2.4 22 110-131 85-106 (132)
78 cd03522 MoeA_like MoeA_like. T 58.6 38 0.00082 30.5 6.8 55 76-132 75-129 (312)
79 PLN02983 biotin carboxyl carri 58.4 8.1 0.00018 34.5 2.4 22 112-133 217-238 (274)
80 PRK15136 multidrug efflux syst 58.0 10 0.00022 34.5 3.2 23 112-134 74-96 (390)
81 TIGR00998 8a0101 efflux pump m 57.7 9.9 0.00021 33.1 2.9 23 112-134 55-77 (334)
82 TIGR01843 type_I_hlyD type I s 57.1 8.5 0.00018 34.2 2.4 27 109-135 53-79 (423)
83 PRK10559 p-hydroxybenzoic acid 56.7 9.8 0.00021 33.6 2.8 24 111-134 59-82 (310)
84 PRK03598 putative efflux pump 56.3 9.2 0.0002 33.6 2.5 24 111-134 55-78 (331)
85 PRK07051 hypothetical protein; 55.6 12 0.00027 26.4 2.7 22 112-133 23-44 (80)
86 PRK10476 multidrug resistance 54.9 11 0.00025 33.2 2.9 23 111-133 60-82 (346)
87 TIGR00531 BCCP acetyl-CoA carb 54.7 11 0.00023 30.5 2.5 22 111-132 99-120 (156)
88 COG2190 NagE Phosphotransferas 54.2 13 0.00028 30.6 2.9 22 110-131 88-109 (156)
89 TIGR01000 bacteriocin_acc bact 53.2 11 0.00025 34.8 2.7 54 80-134 41-94 (457)
90 PRK11854 aceF pyruvate dehydro 52.3 13 0.00027 36.5 2.9 22 110-131 221-242 (633)
91 TIGR01730 RND_mfp RND family e 51.9 34 0.00074 29.1 5.3 23 112-134 39-61 (322)
92 PRK06302 acetyl-CoA carboxylas 51.2 12 0.00027 30.1 2.3 24 110-133 97-120 (155)
93 TIGR02927 SucB_Actino 2-oxoglu 51.0 16 0.00035 35.5 3.4 10 176-185 279-288 (590)
94 COG0511 AccB Biotin carboxyl c 50.8 19 0.00041 28.5 3.2 23 109-131 117-139 (140)
95 PF00364 Biotin_lipoyl: Biotin 50.8 15 0.00032 25.6 2.4 35 78-130 40-74 (74)
96 TIGR01348 PDHac_trf_long pyruv 50.6 14 0.00031 35.6 2.9 23 109-131 131-153 (546)
97 PLN02744 dihydrolipoyllysine-r 50.1 16 0.00034 35.5 3.1 22 110-131 129-150 (539)
98 TIGR01108 oadA oxaloacetate de 50.0 17 0.00037 35.5 3.4 24 109-132 527-550 (582)
99 PRK11855 dihydrolipoamide acet 49.5 17 0.00037 34.8 3.3 25 109-133 134-158 (547)
100 TIGR03794 NHPM_micro_HlyD NHPM 48.5 17 0.00037 33.1 3.1 25 111-135 70-94 (421)
101 PRK09578 periplasmic multidrug 46.9 47 0.001 29.8 5.6 22 112-133 76-97 (385)
102 PF13375 RnfC_N: RnfC Barrel s 46.4 17 0.00037 27.4 2.3 25 109-133 40-64 (101)
103 PLN02528 2-oxoisovalerate dehy 46.4 22 0.00047 33.1 3.4 19 113-131 55-73 (416)
104 PRK05889 putative acetyl-CoA c 45.8 28 0.00061 23.9 3.1 19 112-130 52-70 (71)
105 cd06849 lipoyl_domain Lipoyl d 45.7 33 0.00072 21.5 3.3 22 111-132 18-39 (74)
106 PRK14042 pyruvate carboxylase 45.1 24 0.00051 34.7 3.6 26 108-133 534-559 (596)
107 PF05896 NQRA: Na(+)-transloca 44.5 18 0.0004 31.9 2.5 34 109-142 39-84 (257)
108 PRK11856 branched-chain alpha- 43.9 26 0.00057 32.1 3.5 21 111-131 20-40 (411)
109 PRK11578 macrolide transporter 43.9 22 0.00048 31.7 3.0 22 112-133 74-95 (370)
110 PRK15030 multidrug efflux syst 43.3 1E+02 0.0023 27.9 7.3 22 112-133 78-99 (397)
111 PRK11556 multidrug efflux syst 42.9 25 0.00054 32.3 3.2 22 112-133 100-121 (415)
112 PRK11854 aceF pyruvate dehydro 41.4 28 0.0006 34.2 3.4 21 113-133 57-77 (633)
113 PRK09859 multidrug efflux syst 40.7 28 0.00061 31.4 3.2 22 112-133 74-95 (385)
114 PRK14040 oxaloacetate decarbox 40.2 29 0.00063 34.0 3.3 25 109-133 534-558 (593)
115 COG0845 AcrA Membrane-fusion p 40.0 72 0.0016 26.7 5.4 24 109-132 76-99 (372)
116 PRK11855 dihydrolipoamide acet 39.8 33 0.00071 32.9 3.6 25 109-133 17-41 (547)
117 PRK09783 copper/silver efflux 39.2 55 0.0012 30.1 4.8 22 113-134 137-159 (409)
118 TIGR01349 PDHac_trf_mito pyruv 39.1 29 0.00064 32.5 3.1 19 113-131 56-75 (435)
119 PRK06748 hypothetical protein; 37.2 44 0.00096 24.5 3.2 20 112-131 55-74 (83)
120 PF00936 BMC: BMC domain; Int 35.9 1.1E+02 0.0024 21.5 5.0 56 89-150 9-64 (75)
121 TIGR00531 BCCP acetyl-CoA carb 35.6 40 0.00087 27.2 3.0 23 109-131 134-156 (156)
122 TIGR02712 urea_carbox urea car 35.4 37 0.0008 36.0 3.4 24 110-133 1143-1166(1201)
123 PRK06302 acetyl-CoA carboxylas 35.4 41 0.00089 27.1 3.0 23 109-131 133-155 (155)
124 TIGR01348 PDHac_trf_long pyruv 35.3 40 0.00087 32.5 3.4 24 110-133 16-39 (546)
125 PRK11892 pyruvate dehydrogenas 35.2 40 0.00086 32.0 3.3 24 110-133 19-42 (464)
126 TIGR02927 SucB_Actino 2-oxoglu 34.7 42 0.0009 32.7 3.4 24 110-133 19-42 (590)
127 COG1566 EmrA Multidrug resista 34.5 39 0.00085 31.0 3.1 25 109-133 63-87 (352)
128 PF09324 DUF1981: Domain of un 34.1 36 0.00078 24.6 2.3 23 131-153 47-69 (86)
129 PF02843 GARS_C: Phosphoribosy 32.7 60 0.0013 23.8 3.3 36 115-150 41-76 (93)
130 cd01433 Ribosomal_L16_L10e Rib 32.7 69 0.0015 24.2 3.7 16 120-135 75-90 (112)
131 COG1726 NqrA Na+-transporting 31.3 9.4 0.0002 35.8 -1.5 18 112-129 42-59 (447)
132 PRK01202 glycine cleavage syst 29.5 1.1E+02 0.0025 23.7 4.6 40 91-133 24-63 (127)
133 PF01551 Peptidase_M23: Peptid 29.5 53 0.0011 23.3 2.5 20 114-133 56-75 (96)
134 TIGR01995 PTS-II-ABC-beta PTS 29.5 48 0.001 32.5 2.9 22 110-131 545-566 (610)
135 TIGR01235 pyruv_carbox pyruvat 29.3 60 0.0013 34.3 3.7 25 108-132 1083-1107(1143)
136 PRK09282 pyruvate carboxylase 28.4 59 0.0013 31.8 3.3 22 110-131 533-554 (592)
137 PRK09824 PTS system beta-gluco 27.9 51 0.0011 32.6 2.8 22 110-131 561-582 (627)
138 PRK10255 PTS system N-acetyl g 27.2 54 0.0012 32.6 2.8 21 111-131 582-602 (648)
139 cd02396 PCBP_like_KH K homolog 27.0 2E+02 0.0043 19.2 5.5 43 96-142 20-62 (65)
140 PF13437 HlyD_3: HlyD family s 25.8 98 0.0021 22.1 3.4 22 112-133 12-33 (105)
141 PRK06549 acetyl-CoA carboxylas 25.7 74 0.0016 25.2 2.9 19 112-130 111-129 (130)
142 cd06254 M14_ASTE_ASPA_like_4 A 25.5 80 0.0017 27.5 3.4 23 111-133 234-256 (288)
143 TIGR03077 not_gcvH glycine cle 25.3 1.7E+02 0.0036 22.4 4.7 39 91-133 17-56 (110)
144 PF06464 DMAP_binding: DMAP1-b 24.9 68 0.0015 24.5 2.5 27 42-71 2-28 (111)
145 PRK05641 putative acetyl-CoA c 24.8 85 0.0019 25.4 3.2 20 111-130 133-152 (153)
146 PRK00624 glycine cleavage syst 23.8 1.1E+02 0.0024 23.6 3.5 40 90-133 18-58 (114)
147 PF01597 GCV_H: Glycine cleava 23.2 1.7E+02 0.0037 22.4 4.5 40 91-133 18-57 (122)
148 cd06255 M14_ASTE_ASPA_like_5 A 23.1 95 0.0021 27.3 3.4 26 111-136 242-267 (293)
149 KOG0559 Dihydrolipoamide succi 23.1 74 0.0016 30.0 2.7 70 40-132 75-148 (457)
150 COG4770 Acetyl/propionyl-CoA c 22.5 1E+02 0.0022 30.7 3.6 26 107-132 583-608 (645)
151 COG1038 PycA Pyruvate carboxyl 22.3 71 0.0015 33.2 2.7 25 107-131 1087-1111(1149)
152 TIGR00999 8a0102 Membrane Fusi 22.2 3E+02 0.0065 22.7 6.1 17 118-134 1-17 (265)
153 cd06251 M14_ASTE_ASPA_like_1 A 22.1 1E+02 0.0022 26.8 3.4 24 111-134 230-253 (287)
154 PF06794 UPF0270: Uncharacteri 20.9 52 0.0011 23.6 1.0 30 38-67 1-30 (70)
155 PRK12999 pyruvate carboxylase; 20.3 1E+02 0.0022 32.6 3.4 24 109-132 1086-1109(1146)
156 TIGR01730 RND_mfp RND family e 20.3 1.6E+02 0.0034 25.0 4.1 36 81-134 134-169 (322)
157 TIGR03309 matur_yqeB selenium- 20.1 1E+02 0.0022 27.3 2.9 23 110-132 174-196 (256)
No 1
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=100.00 E-value=4.7e-48 Score=336.42 Aligned_cols=142 Identities=45% Similarity=0.732 Sum_probs=137.4
Q ss_pred ChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCC
Q 029760 46 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 125 (188)
Q Consensus 46 ~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~ 125 (188)
+...++..++.||.||+| +||+||+++++++.++++.+++||+||+||++++.++|+.+|++++++|+++||+++++|+
T Consensus 2 ~~~~~~~~v~~~L~ED~g-~gDiTt~al~~~~~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~ 80 (280)
T COG0157 2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGD 80 (280)
T ss_pred chhhHHHHHHHHHHhhcC-CCCcccccccCCCCeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCC
Confidence 346789999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 126 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 126 ~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+|++++|+++.||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 81 ~i~~~~G~a~~lL~~ER~aLN~L~~lSGIAT~T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV 145 (280)
T COG0157 81 VLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEALRGTNVRIADTRKTTPGLRLLEKYAV 145 (280)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCcEEEeccCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 6899999999999999999997
No 2
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=100.00 E-value=1.7e-47 Score=337.79 Aligned_cols=152 Identities=78% Similarity=1.184 Sum_probs=145.0
Q ss_pred CCccCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcC
Q 029760 37 SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 116 (188)
Q Consensus 37 ~~~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~ 116 (188)
.|...++.+|...+++.|++||+||+|.+||+||.++++++..+++.|++|++||+||++++.++|+.+|++++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~~~ 85 (308)
T PLN02716 6 AMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWAAI 85 (308)
T ss_pred ccccccccCChHHHHHHHHHHHHHhCCCCCCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEEeC
Confidence 35566777787789999999999999845999999999999999999999999999999999999999999999999999
Q ss_pred CCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEeecCCCCcCchhHhhccC
Q 029760 117 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 117 DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~~~~I~~TRKT~PGlR~leKyAV 188 (188)
||+.|++|++|++++|++++||.+||++||||||+|||||+|++||+++++++|+|||||+||+|.||||||
T Consensus 86 dG~~v~~G~~i~~v~G~a~~il~~ER~aLN~L~~~SGIAT~T~~~V~~~~~~~I~~TRKT~PGlR~l~k~AV 157 (308)
T PLN02716 86 DGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSGIATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157 (308)
T ss_pred CCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEeeecCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998899999999999999999997
No 3
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.4e-47 Score=332.61 Aligned_cols=144 Identities=40% Similarity=0.609 Sum_probs=137.5
Q ss_pred CChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCC
Q 029760 45 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 124 (188)
Q Consensus 45 ~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G 124 (188)
++.+.++++|++||+||+|.+||+||+++++++..+++.|++|++||+||++++.++|+.+|++++++|+++||+.+++|
T Consensus 6 ~~~~~~~~~i~~~l~ED~~~~gDlTt~~l~~~~~~~~~~i~ake~gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~g 85 (281)
T PRK06106 6 LPRLMLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPG 85 (281)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCcccccCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcCC
Confidence 44456999999999999983499999999999999999999999999999999999999999889999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 125 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 125 ~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
++|++++|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 86 ~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 151 (281)
T PRK06106 86 DVIATISGPARGLLTAERTALNFLCHLSGIATATASIVAAIAGTKAKVVCTRKTTPGLRALEKYAV 151 (281)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999995 6899999999999999999997
No 4
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=6.6e-47 Score=331.74 Aligned_cols=149 Identities=36% Similarity=0.570 Sum_probs=141.9
Q ss_pred cCCccCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCC-cEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEE
Q 029760 36 ESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLD-MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 114 (188)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~-~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~ 114 (188)
.||..+||. ..++++|+.||+||+| +||+||+++++.+ ..+++.|++|++||+||+++++++|+.+|++++++|+
T Consensus 2 ~~~~~~~~~---~~~~~~i~~~l~ED~~-~~DlTt~~~~~~~~~~~~~~i~ar~~gv~~G~~~a~~i~~~~~~~~~~~~~ 77 (288)
T PRK07428 2 SSMAMLPPW---LVLDPLLQQWLREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPL 77 (288)
T ss_pred CCcccCCcc---hhHHHHHHHHHHhcCC-CCCCCcccccCCCCcEEEEEEEecCCeEEECHHHHHHHHHHcCCcEEEEEE
Confidence 478888887 5588999999999999 7999999999888 8999999999999999999999999999988888899
Q ss_pred cCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 115 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 115 ~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
++||+.|++|++|++++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 78 ~~dG~~v~~g~~i~~~~G~a~~ll~~eR~~lN~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~l~k~AV 153 (288)
T PRK07428 78 VAEGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKIADLPTQLVDTRKTTPGLRLLEKYAT 153 (288)
T ss_pred cCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994 6899999999999999999997
No 5
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=7.8e-47 Score=330.35 Aligned_cols=140 Identities=43% Similarity=0.666 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEE
Q 029760 48 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 127 (188)
Q Consensus 48 ~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~i 127 (188)
..++++|+.||+||+| +||+||+++++++..++++|++|++||+||++++.++|+.+|++++++|+++||+.+++|++|
T Consensus 5 ~~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~a~i~are~gvlaG~~~a~~if~~~~~~~~v~~~~~dG~~v~~G~~i 83 (281)
T PRK06543 5 HIIDRIVEAALAEDAP-WGDITSETLIPASATASAHLTAREPGVFSGIDVFAAAFRLVDPAITVTLAVADGERFEAGDIL 83 (281)
T ss_pred HHHHHHHHHHHHhCCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCCeEEEEEeCCCCEecCCCEE
Confidence 3488999999999999 799999999998999999999999999999999999999999889999999999999999999
Q ss_pred EEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 128 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 128 l~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
++++|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 84 ~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 146 (281)
T PRK06543 84 ATVTGPARSVLTAERIALNFTQRMSGIATLTAAFVDAVNGTRARIVDTRKTTPGLRIFERYAV 146 (281)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999995 6899999999999999999997
No 6
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.5e-46 Score=327.34 Aligned_cols=145 Identities=32% Similarity=0.519 Sum_probs=138.0
Q ss_pred CCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEc--CCCCe
Q 029760 43 PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL--KDGDH 120 (188)
Q Consensus 43 ~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~--~DG~~ 120 (188)
...|.+.++++|+.||+||+| +||+||.++++++..+++.|++|++||+||++++.++|+.+|++++++|++ +||+.
T Consensus 6 ~~~~~~~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gvlaG~~~a~~if~~l~~~~~~~~~~~~~dG~~ 84 (290)
T PRK06559 6 TDLTPFQIDDTLKAALREDVH-SEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDR 84 (290)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCcEEEEEeecCCCCCE
Confidence 345556799999999999999 799999999999999999999999999999999999999999889999988 99999
Q ss_pred ecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 121 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 121 v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+++|++|++++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 85 v~~G~~i~~v~G~a~~ll~~ER~alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 154 (290)
T PRK06559 85 LTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAV 154 (290)
T ss_pred ecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 5899999999999999999997
No 7
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.2e-46 Score=328.09 Aligned_cols=138 Identities=36% Similarity=0.600 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEE
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 128 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il 128 (188)
.++++|++||+||+| +||+|| .+++++..+++.|++|++||+||+++++++|+.+|++++++|+++||+.|++|++|+
T Consensus 24 ~~~~~i~~~L~ED~~-~gDlTt-~~~~~~~~~~a~i~are~gvlaG~~~a~~if~~l~~~~~v~~~~~dG~~v~~G~~i~ 101 (294)
T PRK06978 24 AIARNVADAIAEDVG-SGDQTG-RLVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTWRYREGDRMTADSTVC 101 (294)
T ss_pred HHHHHHHHHHHhcCC-CCCCCc-cccCCCceEEEEEEEcCCEEEECHHHHHHHHHHhCCCeEEEEEcCCCCEeCCCCEEE
Confidence 389999999999999 799999 567778899999999999999999999999999998899999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 129 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 129 ~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 102 ~~~G~a~~lL~~ER~aLN~l~~~SGIAT~T~~~V~~~~~~~~~I~dTRKT~PGlR~lekyAV 163 (294)
T PRK06978 102 ELEGPARALLTAERNALNFLQLLSGVASATRRYVDRIAGTRARILDTRKTLPGLRLAQKYAV 163 (294)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999984 6899999999999999999997
No 8
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1e-45 Score=322.61 Aligned_cols=139 Identities=42% Similarity=0.595 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEE
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 128 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il 128 (188)
.++++|++||+||+| +||+||.++++.+..+++.|++|++||+||++++.++|+.+|++++++|+++||+.|++|++|+
T Consensus 5 ~~~~~i~~~l~ED~~-~~DlTt~~~i~~~~~~~~~~~ar~~gv~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i~ 83 (277)
T PRK08072 5 KLKQALNRFFLEDIG-EGDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEIIA 83 (277)
T ss_pred HHHHHHHHHHhcCCC-CCCCCcccccCCCCeEEEEEEecCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEE
Confidence 589999999999999 7999999987777689999999999999999999999999998899999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 129 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 129 ~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 84 ~~~G~~~~ll~~er~~ln~l~~~sGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 145 (277)
T PRK08072 84 TVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDDSHIRICDTRKTTPGLRMFDKYAV 145 (277)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999994 5899999999999999999997
No 9
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=100.00 E-value=1.8e-45 Score=322.17 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEE
Q 029760 50 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 129 (188)
Q Consensus 50 ~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~ 129 (188)
-++.|+.||+||+| +||+||.++++++..+++.|++|++||+||++++.++|+.+| ++++|+++||+.|++|++|++
T Consensus 5 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~ake~gv~aG~~~a~~if~~l~--~~v~~~~~dG~~v~~G~~i~~ 81 (284)
T PRK06096 5 SDAQLDALLLEDIQ-GGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSDGSQANAGQRLIS 81 (284)
T ss_pred cHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 45779999999999 799999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhccC
Q 029760 130 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 130 v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~----~~~I~~TRKT~PGlR~leKyAV 188 (188)
++|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 82 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV 144 (284)
T PRK06096 82 AQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDGNIACTRKAIPGTRLLATQAV 144 (284)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHH
Confidence 9999999999999999999999999999999999983 5899999999999999999997
No 10
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.5e-45 Score=319.30 Aligned_cols=139 Identities=40% Similarity=0.658 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEE
Q 029760 48 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 127 (188)
Q Consensus 48 ~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~i 127 (188)
.+++++|+.||+||+| +||+|| .+++.+..++++|++||+||+||++++.++|+.+|++++++|+++||+.|++|++|
T Consensus 7 ~~~~~~i~~~l~ED~~-~gDlTt-~~~~~~~~~~~~i~ar~~gi~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i 84 (277)
T PRK05742 7 AEIEANVRRALAEDIG-SGDITA-QLIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVL 84 (277)
T ss_pred HHHHHHHHHHHHhcCC-CCCCCc-cccCCCcEEEEEEEECCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEE
Confidence 4578999999999999 799999 45667889999999999999999999999999999889999999999999999999
Q ss_pred EEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 128 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 128 l~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
++++|++++||.+||++||||||||||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 85 ~~i~G~~~~ll~~ER~~ln~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 147 (277)
T PRK05742 85 FHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVAGTQVKLLDTRKTLPGLRLAQKYAV 147 (277)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 999999999999999999999999999999999999984 5899999999999999999997
No 11
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=6.3e-45 Score=319.41 Aligned_cols=148 Identities=35% Similarity=0.513 Sum_probs=138.9
Q ss_pred cCCCCCChhhHHHHHHHHHHhhcCCCC-CcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHH-HcCC-CcEEEEEcC
Q 029760 40 IKLPSHPTYDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFH-EVDP-SLKVEWSLK 116 (188)
Q Consensus 40 ~~~~~~~~~~~~~~i~~~L~ED~~~~g-DlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~-~l~~-~l~v~~~~~ 116 (188)
+.-..+....++++|++||+||+| +| |+||+++++++..+++++++|++||+||++++.++|+ .+|+ +++++|+++
T Consensus 5 ~~~~~~~~~~~~~~i~~~l~ED~~-~~~DlTt~~l~~~~~~~~a~i~are~gilaG~~~a~~if~~~~~~~~~~v~~~~~ 83 (289)
T PRK07896 5 LALAGLELDEARAVIRRALDEDLR-YGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGTDGYEVLDRVE 83 (289)
T ss_pred ccccCCCHHHHHHHHHHHHHHhCC-CCCCCCcCccCCCCCeEEEEEEecCCEEEECHHHHHHHHHHhcCCCceEEEEEcC
Confidence 444566677899999999999999 67 9999999999999999999999999999999999995 6687 789999999
Q ss_pred CCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 117 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 117 DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
||+.+++|++|++++|++++||++||++||||||||||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 84 dG~~v~~g~~i~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 157 (289)
T PRK07896 84 DGARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAVAGTKAKIRDTRKTLPGLRALQKYAV 157 (289)
T ss_pred CCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984 6899999999999999999997
No 12
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=100.00 E-value=5.3e-45 Score=318.26 Aligned_cols=136 Identities=26% Similarity=0.376 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEE
Q 029760 50 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 129 (188)
Q Consensus 50 ~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~ 129 (188)
.+..|++||+||+| +||+||.++++.+.++++.|++|++||+||++++.++|+.+| ++++|+++||+.|++|++|++
T Consensus 4 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gv~~G~~~~~~i~~~l~--~~~~~~~~dG~~v~~g~~i~~ 80 (277)
T TIGR01334 4 STGLIDNLLLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPSGSRALAGTLLLE 80 (277)
T ss_pred CHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 45779999999999 799999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhccC
Q 029760 130 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 130 v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~----~~~I~~TRKT~PGlR~leKyAV 188 (188)
++|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.++||||
T Consensus 81 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av 143 (277)
T TIGR01334 81 AKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAV 143 (277)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHH
Confidence 9999999999999999999999999999999999984 5899999999999999999996
No 13
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=1.7e-44 Score=317.51 Aligned_cols=140 Identities=34% Similarity=0.582 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHhhcCC----CCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecC
Q 029760 48 YDLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 123 (188)
Q Consensus 48 ~~~~~~i~~~L~ED~~~----~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~ 123 (188)
.+++++|+.||+||+|. |||+|| .+++++..++++|++|++||+||+++++++|+.+|++++++|+++||+.|++
T Consensus 21 ~~~~~~i~~~l~ED~~~~~~~~gDlTt-~~l~~~~~~~~~i~ake~gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~ 99 (296)
T PRK09016 21 LDIPAAVAQALREDLGGTVDANNDITA-QLLPADSRSHATIITREDGVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITA 99 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCC-cccCCCCEEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEcCCCCEecC
Confidence 36899999999999984 599999 5666788999999999999999999999999999988889999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 124 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 124 G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
|++|++++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 100 G~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 166 (296)
T PRK09016 100 NQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELLAGTNTQLLDTRKTLPGLRSALKYAV 166 (296)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999984 5899999999999999999997
No 14
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=1.4e-44 Score=313.65 Aligned_cols=136 Identities=54% Similarity=0.860 Sum_probs=131.9
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 52 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 52 ~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
+.|+.||+||+| +||+||.++++++..++++|++|++||+||++++.++|+.+|++++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 2 AIVRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEE
Confidence 578999999999 7999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 132 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 132 G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
|++++||.+||++||||||+|||||+|++||++++ +++|++||||+||+|.+|||||
T Consensus 81 G~~~~ll~~Er~~ln~L~~~SGIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (268)
T cd01572 81 GPARSLLTAERTALNFLQRLSGIATLTRRYVEALAGTKARILDTRKTTPGLRLLEKYAV 139 (268)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999995 6899999999999999999997
No 15
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=100.00 E-value=2e-44 Score=313.35 Aligned_cols=134 Identities=28% Similarity=0.322 Sum_probs=130.0
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 52 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 52 ~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
..|++||+||+| +||+||+++++.+..+++.|++|++||+||++++.++|+.+| ++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ak~~gv~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 2 AELERLLLEDAP-YGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred HHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEECCCEEEECHHHHHHHHHHcC--cEEEEEcCCCCEecCCCEEEEEE
Confidence 568999999999 799999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhccC
Q 029760 132 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 132 G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~----~~~I~~TRKT~PGlR~leKyAV 188 (188)
|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 79 G~~~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (272)
T cd01573 79 GPAAALHLGWKVAQTLLEWASGIATATAEMVAAARAVNPDIVVATTRKAFPGTRKLALKAI 139 (272)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCccchHHHHHHH
Confidence 99999999999999999999999999999999994 5899999999999999999996
No 16
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.1e-44 Score=313.60 Aligned_cols=134 Identities=43% Similarity=0.602 Sum_probs=129.0
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 52 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 52 ~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
..|++||+||+| +||+||+++++.+..++++|++|++||+||++++.++|+.++ ++++|+++||+.|++|++|++++
T Consensus 4 ~~l~~~l~ED~~-~gDlTt~~li~~~~~~~~~~~ar~~gi~aG~~~a~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 4 EYLLRFVEEDAP-FGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHFG--VKVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEecCCeEEeCHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEEEEE
Confidence 568999999999 799999988877899999999999999999999999999998 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhccC
Q 029760 132 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 132 G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~----~~~I~~TRKT~PGlR~leKyAV 188 (188)
|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 81 G~~~~ll~~Er~~ln~l~~~SGIAT~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av 141 (278)
T PRK08385 81 GNARAILLVERTALNIIGRMSGIATETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAI 141 (278)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHH
Confidence 99999999999999999999999999999999983 5899999999999999999997
No 17
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=100.00 E-value=2.9e-44 Score=311.43 Aligned_cols=133 Identities=45% Similarity=0.722 Sum_probs=129.0
Q ss_pred HHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 53 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 53 ~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
+|+.||+||+| +||+||+++++.+.+++++|++|++||+||++++.++|+.+| ++++|+++||+.+++|++|++++|
T Consensus 1 ~i~~~l~ED~~-~gDlTt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 1 LLDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred ChHHHHhhCCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHcC--eEEEEEeCCCCEecCCCEEEEEEE
Confidence 37899999999 799999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 133 RAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 133 ~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
++++||.+||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 78 ~~~~il~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~l~k~Av 135 (265)
T TIGR00078 78 PARSLLTAERTALNFLGRLSGIATATRKYVEAARGTNVRIADTRKTTPGLRLLEKYAV 135 (265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChhhhHHHHHHH
Confidence 9999999999999999999999999999999995 5899999999999999999997
No 18
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=7.2e-44 Score=310.53 Aligned_cols=136 Identities=32% Similarity=0.552 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEE
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 128 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il 128 (188)
.++++|++||+||+| +||+|| .+++.+..+++.|++|++||+||++++.++|+.+| ++++|+++||+.+++|++|+
T Consensus 2 ~~~~~i~~~l~ED~~-~~DlTt-~~~~~~~~~~a~i~ar~~~v~~G~~~a~~i~~~l~--~~~~~~~~dG~~v~~g~~i~ 77 (273)
T PRK05848 2 EIKDFLEAALKEDLG-RGDLFE-RLLEKDFKATAKIIAKSEGVFSGEKYALELLEMTG--IECVFTIKDGERFKKGDILM 77 (273)
T ss_pred cHHHHHHHHHHhcCC-CCCccc-cccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEE
Confidence 478999999999999 799999 56666888999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 129 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 129 ~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+++|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 78 ~i~G~a~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (273)
T PRK05848 78 EIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999995 6899999999999999999997
No 19
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=1.4e-43 Score=307.14 Aligned_cols=135 Identities=50% Similarity=0.752 Sum_probs=130.6
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 52 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 52 ~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
+.|+.||+||+| +||+||.++++++..++++|++|++||+||++++.++|+.+| +++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~gD~tt~~~~~~~~~~~~~i~~r~~~v~~G~~~~~~i~~~~~-~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 2 ALLDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHhC-CeEEEEEeCCCCEecCCCEEEEEE
Confidence 578999999999 799999999999999999999999999999999999999995 599999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 132 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 132 G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
|++++||.+||++||||||+|||||+|++||++++ +++|++||||+||+|.++||||
T Consensus 80 G~~~~l~~~Er~~ln~L~~~sgIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 138 (269)
T cd01568 80 GPARSLLTAERVALNLLQRLSGIATATRRYVEAARGTKARIADTRKTTPGLRLLEKYAV 138 (269)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999995 6899999999999999999996
No 20
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=276.72 Aligned_cols=148 Identities=36% Similarity=0.501 Sum_probs=137.0
Q ss_pred CCcCCccCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEE
Q 029760 34 GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 113 (188)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~ 113 (188)
..+++.++||.||.+..+..|...+.+|.++|||+++-+. ..+|.+.+|+||++||++++.++|+.++ ++|+|
T Consensus 3 ~eV~~~llPpv~~a~~~d~viwL~ed~p~~~~G~~v~ga~-----~~EA~l~aK~DG~laGVpfAd~iF~q~~--LqVEW 75 (300)
T KOG3008|consen 3 AEVLALLLPPVTLAALVDSVIWLREDCPGLNYGALVSGAG-----PSEAALWAKSDGVLAGVPFADAIFTQLN--LQVEW 75 (300)
T ss_pred cchhcccCCCCchHHHHHHHHHHHhcCCCCcccceEecCC-----hHHHHhhccCCCeeecchhHHHHHhhhc--eeEEE
Confidence 3568899999999999998887777777777889887543 2778999999999999999999999998 99999
Q ss_pred EcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhccC
Q 029760 114 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 114 ~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~----~~~I~~TRKT~PGlR~leKyAV 188 (188)
+.+||+++.|+-.+..++|+++.|+.+||++||+|+|+|||||.|+.++++|+ +..|++||||+||+|++|||++
T Consensus 76 ~~KeGs~l~p~~~vaKv~GpAh~IllAERvaLN~l~R~SGIATa~~~~~~aAr~~g~~g~IagTRKTtPGLRlveKy~~ 154 (300)
T KOG3008|consen 76 FLKEGSKLVPVARVAKVRGPAHCILLAERVALNTLARCSGIATAAAAAVEAARGAGWTGHIAGTRKTTPGLRLVEKYGL 154 (300)
T ss_pred EecCCCeecccceeEeecCcceeeeehHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcceecccccCCcchhhhhhhce
Confidence 99999999999999999999999999999999999999999999999999997 6899999999999999999986
No 21
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=2.1e-34 Score=257.77 Aligned_cols=131 Identities=21% Similarity=0.219 Sum_probs=123.8
Q ss_pred HHHHHHHHhhcCCCCCcccccc---cCCCcEEEEEEEee-----CCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecC
Q 029760 52 GVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAK-----EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 123 (188)
Q Consensus 52 ~~i~~~L~ED~~~~gDlTt~~l---~~~~~~~~a~i~aK-----e~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~ 123 (188)
+.|+.+|.||+ |+|+|++++ +. +..++++|++| ++||+||++++.++|+.++ +++ ++++||+.+.+
T Consensus 10 ~~~~~~l~~D~--Y~~~t~~~l~~~g~-~~~~~~~i~~R~~p~~~~~i~aG~~~a~~~~~~~~--~~v-~~~~dG~~v~~ 83 (343)
T PRK08662 10 EEIKSGKTTDI--YFERTVEILEHAGK-NPKVVAEVTASSLPKGEWGVFAGLEEVLELLEGKP--VDV-YALPEGTLFDP 83 (343)
T ss_pred HHHHhhhHHHH--HHHHHHHHHHHcCC-CCeEEEEEEEecCCCCCCEEEccHHHHHHHHhhCC--cEE-EEeCCCCEecC
Confidence 56888999999 699999988 66 88999999999 9999999999999999987 888 89999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 124 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 124 G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
|+++++++|++.++|.+||++||+|+|+|||||+|++||+++. ++.+++||||+||+|.++||||
T Consensus 84 g~~il~i~G~~~~ll~~Er~~Ln~L~~~SgIAT~t~~~v~aa~~~~v~~~~TRKt~Pg~r~l~k~Av 150 (343)
T PRK08662 84 KEPVMRIEGPYLEFGIYETALLGILAHASGIATAAARCKEAAGDKPVLSFGARHVHPAIAPMMDRAA 150 (343)
T ss_pred CceEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCCCHhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999986 4677889999999999999996
No 22
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.97 E-value=1.7e-31 Score=235.22 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=112.5
Q ss_pred CCCccccccc--CCCcEEEEEEEeeCC--eeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHH
Q 029760 65 RGDVTCMATI--PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 140 (188)
Q Consensus 65 ~gDlTt~~l~--~~~~~~~a~i~aKe~--gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~a 140 (188)
|.|.|++.+. .++..++++|++|++ ||+||++++.++|+.++ +++. .++||+.|.+|++|++++|++++||.+
T Consensus 7 yf~~t~~~~~~~~~~~~~~~~i~~r~~~~~v~aG~~~~~~~~~~~~--~~i~-~~~dG~~v~~g~~i~~i~G~~~~ll~~ 83 (302)
T cd01571 7 YFLRTRKILEKKGPNPTVTMEFTQRSLPWAVLCGLEEVLALLEGLP--VKVY-ALPEGTIFNPKEPVLRIEGPYQDFGEL 83 (302)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEEEcCchHHHhhHHHHHHHHhCCC--eEEE-EeCCCCEECCCCcEEEEEeCHHHHHHH
Confidence 5688887653 457789999999999 99999999999999886 8884 699999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 141 ERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 141 ERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
||++||+|+|+|||||+|++||++++ ++++++||||+||+|.++||||
T Consensus 84 Er~~Ln~L~~~SgIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 133 (302)
T cd01571 84 ETAILGILARASSIATNAARVKLAAGDKPVISFGDRRDHPAIQPMDGRAA 133 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccCCcchhHHHHHHH
Confidence 99999999999999999999999995 5899999999999999999996
No 23
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=99.96 E-value=3.4e-29 Score=184.33 Aligned_cols=88 Identities=47% Similarity=0.754 Sum_probs=81.5
Q ss_pred cCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHH
Q 029760 62 AGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 141 (188)
Q Consensus 62 ~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aE 141 (188)
+| +||+||+++++.+..+++.+++|++||+||++++.++|+.++ ++++|+++||+.+++|++|++++|++++||.+|
T Consensus 1 i~-~gDlTt~~~~~~~~~~~a~i~are~gV~aG~~~~~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~E 77 (88)
T PF02749_consen 1 IG-RGDLTTEALIPPDKTGTATIIAREDGVLAGLEEAEEIFEKLG--LEVEWLVKDGDRVEPGDVILEIEGPARALLTAE 77 (88)
T ss_dssp HT-TG-HHHHHHSCTTSEEEEEEEESSSEEE-SHHHHHHHHHHCT--EEEEESS-TT-EEETTCEEEEEEEEHHHHHHHH
T ss_pred Cc-CCccCcccccCCCCEEEEEEEeCCCEEEECHHHHHHHHhhcc--EEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHH
Confidence 46 799999889999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 029760 142 RVVLNFMQRMS 152 (188)
Q Consensus 142 Rv~LN~L~~~S 152 (188)
|++||||||||
T Consensus 78 R~~LN~l~~~S 88 (88)
T PF02749_consen 78 RTALNFLQRLS 88 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999998
No 24
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.95 E-value=6.6e-28 Score=207.64 Aligned_cols=122 Identities=38% Similarity=0.566 Sum_probs=114.7
Q ss_pred Cccccccc----CCCcEEEEEEEeeCC--eeEEcHHHHHHHHHHcC-CCcEEEEEcCCCCeecCCCEEEEEEechhhhHH
Q 029760 67 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 139 (188)
Q Consensus 67 DlTt~~l~----~~~~~~~a~i~aKe~--gVvaG~~~a~~if~~l~-~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~ 139 (188)
|+|+..+. .++..++++|++|++ ||+||++++.++|+.++ +++.+.+.++||+.+.+|+++++++|++.+++.
T Consensus 1 D~y~~~~~~~~~~~~~~~~~~~~~R~~~~~v~~Gl~~~~~~l~~l~~~~~~~~~~~~eG~~v~~g~~vl~i~G~~~~~~~ 80 (281)
T cd00516 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGTVVEPGEPLLTIEGPARELLL 80 (281)
T ss_pred ChhHHHHHhhhCCCCCEEEEEEEEecCCCEEEcCHHHHHHHHHhcCCCCceEEEECCCCCEecCCCEEEEEEEcHHHHHH
Confidence 77877776 678899999999999 99999999999999995 458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhccC
Q 029760 140 AERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 140 aERv~LN~L~~~SGIAT~T~~~V~aa~----~~~I~~TRKT~PGlR~leKyAV 188 (188)
+||++||+|+++|||||.|++++++++ ++.+++||||+||+|.++||||
T Consensus 81 ~E~~~Lnil~~~sgiAt~t~~~v~~~~~~~~~~~~~gtRk~~p~~~~~~~~A~ 133 (281)
T cd00516 81 LERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRKTTPGLRLLEKYAV 133 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeecCCCCcchhHHhhHHH
Confidence 999999999999999999999999985 4799999999999999999996
No 25
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=2.3e-27 Score=213.36 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=104.1
Q ss_pred CcEEEEEEEee-CCeeEEcHHHHHHHHHHcCCCcE--EEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 029760 77 DMEVEAHFLAK-EDGIIAGIALAEMIFHEVDPSLK--VEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153 (188)
Q Consensus 77 ~~~~~a~i~aK-e~gVvaG~~~a~~if~~l~~~l~--v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SG 153 (188)
+..++++|++| ++||+||++++.++|+.++.+.+ ..+.++||+.|.+|++|++++|++.+++.+||++||+|+|+||
T Consensus 36 ~~~~~~~~~~R~~~~VlaGleea~~ll~~l~~~~~~~~i~a~~eG~~v~~gepvl~i~G~~~~l~~~Et~iLnlL~~~Sg 115 (352)
T PRK07188 36 NNIVTMQFFQRRENAVLCGTDEVIALLKTFAKDPSKLKIRYLKDGDIINPFETVLEIEGPYENFGFLEGIIDGILARRTS 115 (352)
T ss_pred CCeEEEEEEEeCCCeEEecHHHHHHHHHHcCCCccceEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999 99999999999999999863222 5579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 154 IATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 154 IAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
|||+|++||++|+ ++..++||||+||+|.++|||+
T Consensus 116 IAT~a~r~v~aA~~~~~~~~gTRKt~p~~~~~~~~Aa 152 (352)
T PRK07188 116 VATNAYNVVQAANEKPVIFMGDRADHYLQQAGDGYAA 152 (352)
T ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCccchhHhhHHh
Confidence 9999999999995 6789999999999999999996
No 26
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.13 E-value=4.7e-10 Score=104.62 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=95.2
Q ss_pred HHHHhhcCCCCCccccccc----CCCcEEEEEEEeeC------CeeEEcHHHHHHHHHHcC-------------------
Q 029760 56 LALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD------------------- 106 (188)
Q Consensus 56 ~~L~ED~~~~gDlTt~~l~----~~~~~~~a~i~aKe------~gVvaG~~~a~~if~~l~------------------- 106 (188)
..|.-|... +|..... +.+.++..+++.|. .+|++|++++...++.+.
T Consensus 9 ~~L~TD~Yk---ltm~~~~~~~~~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~~l~~~~~f~~~f 85 (464)
T PRK09243 9 LALLTDLYE---LTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLGIFDEDF 85 (464)
T ss_pred hHHHHHHHH---HHHHHHHHHhCCCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHH
Confidence 345566541 5543323 55667888888886 369999999998888760
Q ss_pred --------CCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeE--eecCCC
Q 029760 107 --------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKT 176 (188)
Q Consensus 107 --------~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~~~~I--~~TRKT 176 (188)
.+.+| +.++||+.|.+|+++++|+|+..++...|+.+||+|++.|+|||+++++++++++.++ ++||..
T Consensus 86 ~~~L~~~~f~~~I-~a~pEG~~v~~~epvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~r~~~~a~~~~v~dFG~Rr~ 164 (464)
T PRK09243 86 LDYLRNFRFTGDV-RAVPEGELVFPNEPLLRVEGPLAEAQLLETLLLNIINFQTLIATKAARIVSAAGGRPLLEFGSRRA 164 (464)
T ss_pred HHHHHhCCCCCeE-EEEeCCccccCCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEecccccC
Confidence 01466 5788999999999999999999999999999999999999999999999999875444 568887
Q ss_pred CcC
Q 029760 177 APT 179 (188)
Q Consensus 177 ~PG 179 (188)
++-
T Consensus 165 ~~~ 167 (464)
T PRK09243 165 QGP 167 (464)
T ss_pred Cch
Confidence 764
No 27
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.11 E-value=9.6e-10 Score=98.29 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=86.3
Q ss_pred CCcEEEEEEEeeC------CeeEEcHHHHHHHHHHcC---------------------------CCcEEEEEcCCCCeec
Q 029760 76 LDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVH 122 (188)
Q Consensus 76 ~~~~~~a~i~aKe------~gVvaG~~~a~~if~~l~---------------------------~~l~v~~~~~DG~~v~ 122 (188)
++..++.+++.|. .+|++|++.+.+.++.+. ..+++ +.++||+.|.
T Consensus 21 ~~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l~~~~~~~~~~~~~L~~~~~~v~i-~a~~EG~~v~ 99 (327)
T cd01570 21 HNKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGIFDEEFLDYLRGFRFTGTI-YAIPEGEVVF 99 (327)
T ss_pred CCCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceE-EEecCCceec
Confidence 3567888888887 266899999988877651 12566 4689999999
Q ss_pred CCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeE--eecCCCCcC
Q 029760 123 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKTAPT 179 (188)
Q Consensus 123 ~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~~~~I--~~TRKT~PG 179 (188)
+|+++++|+|+...+...|+.+||++++.|+|||+++++++++.+.++ .+||..++-
T Consensus 100 ~~~pvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~~~~~~~~~~~~~dFG~Rr~~s~ 158 (327)
T cd01570 100 PNEPLLTVEGPLIEAQLLETLLLNLINFQTLIATKAARVRLAAGGRPLLEFGLRRAQGP 158 (327)
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcc
Confidence 999999999999999999999999999999999999999999876555 458877764
No 28
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=98.88 E-value=1.8e-08 Score=90.00 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCcEEEEEEEeeCC------eeEEcHHHHHHHHHHcCC---------------------------CcEEEEEcCCCCeec
Q 029760 76 LDMEVEAHFLAKED------GIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVH 122 (188)
Q Consensus 76 ~~~~~~a~i~aKe~------gVvaG~~~a~~if~~l~~---------------------------~l~v~~~~~DG~~v~ 122 (188)
++..+..+++.|.. ++++|++.+.+.+..+-. .+++ +.++||+.+.
T Consensus 20 ~~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i-~a~~eG~~~~ 98 (343)
T cd01567 20 PNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLLIFGEFFLYLLFLGKLPLEI-YALPEGTVVF 98 (343)
T ss_pred CCeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCcHHHHHHhhcCCCceEE-EEeCCccccc
Confidence 35678889999974 799999999987765410 2445 4789999999
Q ss_pred CCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC--------------CeEeecCCCCcC
Q 029760 123 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP--------------ATILETRKTAPT 179 (188)
Q Consensus 123 ~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~~--------------~~I~~TRKT~PG 179 (188)
+++++++|+|+..+....|+.+||+++++|++||.+++.++++.. +..++||++.|.
T Consensus 99 ~~~~~i~IeG~~~~~~~~Et~lL~i~~~~t~~at~~~~~~~~a~~~~~~~~~~~~~~~~~~dFGtRr~~s~ 169 (343)
T cd01567 99 PKEPLLTIEGPWPEAGLLETPLLAIWNEATSIATKAARKKLAAGGLLETKDNLEELGFKLHDFGTRRRHSP 169 (343)
T ss_pred CCCeEEEEEechHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccCCCeEEecCCCCcCCh
Confidence 999999999999999999999999999999999999999998853 456789999984
No 29
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=98.62 E-value=4.1e-07 Score=84.69 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=84.3
Q ss_pred CcEEEEEEEeeC------CeeEEcHHHHHHHHHHcC---------------------------CCcEEEEEcCCCCeecC
Q 029760 77 DMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVHK 123 (188)
Q Consensus 77 ~~~~~a~i~aKe------~gVvaG~~~a~~if~~l~---------------------------~~l~v~~~~~DG~~v~~ 123 (188)
+.+++.+++.|. ..|++|++.+...++.+. ..++|. .++||+.|.+
T Consensus 22 ~~~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I~-A~~EG~~v~~ 100 (443)
T TIGR01513 22 NQPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIEYLASLGIFDDAFLDYLREFRFSGTVR-ALPEGSLVFP 100 (443)
T ss_pred CceEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCcEEE-EecCCccccC
Confidence 445888888886 457799999988777630 124553 5899999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeE--eecCCCCc
Q 029760 124 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKTAP 178 (188)
Q Consensus 124 G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~~~~I--~~TRKT~P 178 (188)
++++++|+|+..+....|..+||++.+.|.|||++++++.++.+.++ ++||..++
T Consensus 101 ~ep~l~Iegp~~~~~llEt~lL~~i~~~s~iATka~r~~~aa~~~~l~dFG~Rr~~~ 157 (443)
T TIGR01513 101 NEPLLQVEGPLIEAQLLETLVLNIINFQTLIATKAARIVLAAGGKPLLEFGLRRAQG 157 (443)
T ss_pred CcEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCc
Confidence 99999999999999999999999999999999999999999876555 55888776
No 30
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=98.55 E-value=7.4e-07 Score=82.99 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=81.8
Q ss_pred cEEEEEEEeeC------CeeEEcHHHHHHHHHHcCC---------------------------CcEEEEEcCCCCeecCC
Q 029760 78 MEVEAHFLAKE------DGIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVHKG 124 (188)
Q Consensus 78 ~~~~a~i~aKe------~gVvaG~~~a~~if~~l~~---------------------------~l~v~~~~~DG~~v~~G 124 (188)
.+++.+++.|. ..|+||++.+...++.+.- ..+| +.++||+.|.++
T Consensus 26 ~~~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I-~A~~EG~~v~~~ 104 (443)
T PRK12484 26 APATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLRYLRGLNQFSEEFLAWLAGLRFTGDV-RAVPEGTVVFPN 104 (443)
T ss_pred CeEEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCceE-EEEeCCeeecCC
Confidence 34778888876 4579999999888886520 0155 467899999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeE--eecCCCC
Q 029760 125 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKTA 177 (188)
Q Consensus 125 ~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~~~~I--~~TRKT~ 177 (188)
+++++|+|+..+....|..+||++.+.|.|||++++++.++.+..+ ++||...
T Consensus 105 ep~l~Iegp~~e~~llET~lL~il~~~s~iATka~ri~~aa~~~~l~dFG~Rr~~ 159 (443)
T PRK12484 105 EPLLEVTAPLIEAQLVETFLLNQINHQSLIASKAARCVLAAAGRPVVDFGARRAH 159 (443)
T ss_pred cEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCC
Confidence 9999999999999999999999999999999999999999865555 4577655
No 31
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=98.52 E-value=8.8e-07 Score=81.67 Aligned_cols=127 Identities=18% Similarity=0.259 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhhcCCCCCccccccc----CCCcEEEEEEEeeCC------eeEEcHHHHHHHHHHcC------------
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVD------------ 106 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~----~~~~~~~a~i~aKe~------gVvaG~~~a~~if~~l~------------ 106 (188)
..+..++..|.-|... +|..... +.+..+..+++.|.+ .++||++++.+.++.+-
T Consensus 6 ~~~~~i~~~L~TD~Yk---ltm~q~~~~~~~~~~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~ 82 (405)
T COG1488 6 KSEPDIKSLLDTDLYK---LTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSL 82 (405)
T ss_pred chhHHHhhhhHhHHHH---HHHHHHHHhhCCCccEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHHHHhhc
Confidence 3456677778778742 5543322 333678899999976 79999999999998831
Q ss_pred -------------CCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh-CCCeE--
Q 029760 107 -------------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA-HPATI-- 170 (188)
Q Consensus 107 -------------~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa-~~~~I-- 170 (188)
-.+++ +.+++|+.+.+.|++++++|+..+....|..+||++.+.|.|||+++++++++ .+.++
T Consensus 83 ~~~~~~fl~~L~~f~~~i-~a~~eg~~~~~~ep~l~i~G~~~e~~l~Et~lL~ii~~~~~iatka~r~~~~a~~~~~v~d 161 (405)
T COG1488 83 PFFKPDFLNYLRRFPLDI-YAVPEGTVVFPNEPVLRIEGPYLETILLETPLLGIINEASLIATKAARVKDAAGKGFPVLD 161 (405)
T ss_pred ccccHHHHHHHhhCCCce-EEEeccccccCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Confidence 01444 38999999999999999999999999999999999999999999999999999 46655
Q ss_pred eecCCCCcC
Q 029760 171 LETRKTAPT 179 (188)
Q Consensus 171 ~~TRKT~PG 179 (188)
++||..++.
T Consensus 162 FGtRr~~~~ 170 (405)
T COG1488 162 FGTRRRHSA 170 (405)
T ss_pred ccCcccccc
Confidence 568988875
No 32
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=98.01 E-value=4.9e-05 Score=71.42 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCC--cEEEEEcCCCCeecCCCEEEEEEechhhhH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 029760 96 ALAEMIFHEVDPS--LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH 166 (188)
Q Consensus 96 ~~a~~if~~l~~~--l~v~~~~~DG~~v~~G~~il~v~G~a~~ll----~aERv~LN~L~~~SGIAT~T~~~V~aa~ 166 (188)
+....+++.++.. ++| +.++||+.|.+++++++|+|+..+.. ..|..+||++.+.|.|||.++++++++.
T Consensus 83 ~~~~~~~~~~~g~~p~~I-~AvpEGtvv~~~~Pll~V~~~~~e~~wL~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 158 (463)
T PRK09198 83 AGWRRIVDKYGGYLPLRI-KAVPEGSVVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVATISWEYKQLIR 158 (463)
T ss_pred HHHHHHHHhcCCCCceEE-EEecCCceecCCCCEEEEEeCcHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666654322 444 48999999999999999999999988 6999999999999999999999999874
No 33
>PLN02885 nicotinate phosphoribosyltransferase
Probab=97.75 E-value=0.00032 Score=67.19 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=77.9
Q ss_pred CcEEEEEEEeeC------CeeEEcHHHHHHHHHHc-----------------------------CC-CcEEEEEcCCCCe
Q 029760 77 DMEVEAHFLAKE------DGIIAGIALAEMIFHEV-----------------------------DP-SLKVEWSLKDGDH 120 (188)
Q Consensus 77 ~~~~~a~i~aKe------~gVvaG~~~a~~if~~l-----------------------------~~-~l~v~~~~~DG~~ 120 (188)
+..+...++.|. -.|++|++.+.+.++.+ +. +++| +.++||+.
T Consensus 33 ~~~avf~~f~R~~p~~~~~~v~aGL~~~l~~L~~l~Ft~edi~yL~~~~~~~f~~~Fl~yL~~~~~~~V~I-~A~~EG~l 111 (545)
T PLN02885 33 LDRAVFDLFFRKNPFGGEYTVFAGLEECLRFIANFKFTDDDIDFLRSVMPSGCEDAFFDYLRGLDCSDVEV-YAIPEGSV 111 (545)
T ss_pred CceEEEEEEecCCCCCCcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccccCCHHHHHHHHhCCCCCceE-EecCCCcE
Confidence 455777787776 35589988876655443 11 2344 35799999
Q ss_pred ecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC-CCeE--eecCCC
Q 029760 121 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH-PATI--LETRKT 176 (188)
Q Consensus 121 v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~-~~~I--~~TRKT 176 (188)
|.+++++++|+|+.......|..+||++.+.|.|||.+++++.++. +..+ ++||..
T Consensus 112 vf~~eP~i~IeGp~~~~~LlEt~LL~iI~~~s~iAT~aar~~~aa~~~~~v~eFG~RRa 170 (545)
T PLN02885 112 VFPRVPLMRIEGPLAVVQLLETTFLTLVNYASLVATNAARHRLVAGKSKVLLEFGLRRA 170 (545)
T ss_pred ecCCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCccC
Confidence 9999999999999999999999999999999999999999999984 3444 557766
No 34
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=97.68 E-value=0.00028 Score=65.44 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCC--cEEEEEcCCCCeecCCCEEEEEEechhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 029760 96 ALAEMIFHEVDPS--LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADLAH 166 (188)
Q Consensus 96 ~~a~~if~~l~~~--l~v~~~~~DG~~v~~G~~il~v~G~a~~l----l~aERv~LN~L~~~SGIAT~T~~~V~aa~ 166 (188)
+..+.+.+..+.. ++| +.++||+.|.++++|++|+|+..+. --.|..+||.+.+.|.|||.++++++++.
T Consensus 81 ~~~~~i~~l~~~~lp~~I-~AvpEGtvv~~~~Pll~Ve~t~~e~~Wl~~~lET~lL~~iw~~s~vAT~A~r~k~~~~ 156 (407)
T cd01569 81 DGWRHILELHDGYLPIEI-RAVPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVATISREYKKILR 156 (407)
T ss_pred HHHHHHHHHcCCCCceEE-EEecCCceecCCCCEEEEEecchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433312 445 4899999999999999999999998 88999999999999999999999999984
No 35
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=97.60 E-value=0.00033 Score=66.03 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEechhhhH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH 166 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~a~~ll----~aERv~LN~L~~~SGIAT~T~~~V~aa~ 166 (188)
+++ +.++||+.|.++++|++|+|+..++. ..|..+||++.+.|.|||.++++++++.
T Consensus 101 ~~I-~AvpEGtvvf~~~Pll~Ve~~~~~f~w~~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 161 (470)
T PHA02594 101 IEV-RAVPEGTVVPVKVPVLTIENTHPDFFWLAGYLETVILRGVWYPSTVATLSRECKKILK 161 (470)
T ss_pred ceE-EEecCCceecCCCCEEEEEeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 58999999999999999999987555 7999999999999999999999999974
No 36
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=96.11 E-value=0.028 Score=51.74 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCCCeecC----CCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCeE-
Q 029760 116 KDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATI- 170 (188)
Q Consensus 116 ~DG~~v~~----G~~il~v~G~a~~ll~aERv~LN~L~~~---------------SGIAT~T~~~V~aa-----~~~~I- 170 (188)
++|..+.+ |+.+++|+|+..+....|-.+||+++++ +=|||++++++.++ .+.++
T Consensus 88 ~e~~~v~~~~~~~~~~i~i~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~~~~~~atKa~r~~~~a~~~~~~~~~~~ 167 (377)
T cd01401 88 PEEVVVRLDTGKGQLDIRISGPWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLLEEAKRRDLNGFRFS 167 (377)
T ss_pred cCeeEEecCCCCCeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhhcccCCCCeEE
Confidence 58888877 9999999999999999999999999984 45999999999988 45555
Q ss_pred -eecCCCCc
Q 029760 171 -LETRKTAP 178 (188)
Q Consensus 171 -~~TRKT~P 178 (188)
++||..++
T Consensus 168 eFGtRRr~~ 176 (377)
T cd01401 168 DFGTRRRFS 176 (377)
T ss_pred EecccccCC
Confidence 55888877
No 37
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=94.70 E-value=0.23 Score=46.21 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHH-----HhH----------HHHHHHHHHHH--hCCCeE--eecCCCC
Q 029760 124 GLQFGKVSGRAHSIVIAERVVLNFMQR-----MSG----------IATLTRAMADL--AHPATI--LETRKTA 177 (188)
Q Consensus 124 G~~il~v~G~a~~ll~aERv~LN~L~~-----~SG----------IAT~T~~~V~a--a~~~~I--~~TRKT~ 177 (188)
|+++++|+|+..+....|..+||++++ .++ |||++.+++++ +.+..+ ++||..+
T Consensus 106 ~~~~i~I~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~a~~~iatKa~r~~~a~~~~~~~~~eFGtRR~~ 178 (400)
T PRK05321 106 GQLDIRIEGPWLETILWEVPLLAIISELYFRARSPEVLYAQAKRRLWEKIELLKALPDLSGFKIADFGTRRRF 178 (400)
T ss_pred CeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHhccccCCCeEEEecccccc
Confidence 899999999999999999999999998 544 89999999776 223444 5688766
No 38
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=93.17 E-value=0.096 Score=34.48 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.6
Q ss_pred EEEEcCCCCeecCCCEEEEEEechh
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGRAH 135 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~a~ 135 (188)
.++++++|+.|++|++|+++.-+..
T Consensus 14 ~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 14 ESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEEecCCCEEcCCCEEEEECcHHH
Confidence 4579999999999999999987644
No 39
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=91.15 E-value=1 Score=41.89 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=45.5
Q ss_pred CCCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-------CCeE--eecCCC
Q 029760 123 KGLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-------PATI--LETRKT 176 (188)
Q Consensus 123 ~G~~il~v~G~a~~ll~aERv~LN~L~~~---------------SGIAT~T~~~V~aa~-------~~~I--~~TRKT 176 (188)
.|+.+++|+|+-.+....|-.+||+++++ +=|||++.+++.++. +..+ ++||..
T Consensus 101 eg~~~i~i~Gp~~~~~L~EtplLaiine~~~~~~~~~~~~~~~~~~iatKa~rl~~~a~~~~~~~~~~~~~eFGtRRr 178 (394)
T TIGR01514 101 KGKLDIRISGSWRDTILYEIPLLAIISELYFRFRDAEADYEQQLEVLESKLDQLKAEIAAETMFENGFRFSEFGTRRR 178 (394)
T ss_pred CCcEEEEEEeehHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhcccccCCCCeeEeeccccc
Confidence 47999999999999999999999999983 669999999999872 4555 457765
No 40
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=89.98 E-value=0.88 Score=32.62 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=29.6
Q ss_pred cCCCcEEEEEcCCCCeecCCCEEEEEEechhh-hHHHHHHHH
Q 029760 105 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS-IVIAERVVL 145 (188)
Q Consensus 105 l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~-ll~aERv~L 145 (188)
.|+..=+.++++=||.|++||+|+++..+-.. +-.++..++
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~~~a~~~~~ 69 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYANDEARLEEAVERLR 69 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESSSSHHHHHHHHHH
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCChHHHHHHHHHHH
Confidence 34567788999999999999999999999887 444444333
No 41
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=89.87 E-value=0.34 Score=34.05 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+|++++|+.|++||+|++++-.
T Consensus 18 ~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 18 TKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEESSSTTEEESTTSEEEEEESS
T ss_pred eEEEECCCCEEEcCceEEEEEcC
Confidence 56999999999999999999743
No 42
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=89.24 E-value=0.51 Score=32.74 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEech
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
-=++|++++|+.|++|+.++.++-.-
T Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 12 SVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEecc
Confidence 34679999999999999999987653
No 43
>PRK06748 hypothetical protein; Validated
Probab=89.10 E-value=0.51 Score=34.77 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEe
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
.-++|++++||.|++||.|++++-
T Consensus 14 ~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 14 KVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 346899999999999999999987
No 44
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=83.68 E-value=1.6 Score=30.02 Aligned_cols=24 Identities=21% Similarity=0.190 Sum_probs=20.2
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
=+.|+++.|+.|++|+.+++++-.
T Consensus 12 i~~~~v~~G~~V~~g~~l~~ve~~ 35 (70)
T PRK08225 12 VWKIVVKVGDTVEEGQDVVILESM 35 (70)
T ss_pred EEEEEeCCCCEECCCCEEEEEEcC
Confidence 456899999999999999998653
No 45
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=82.48 E-value=13 Score=33.95 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=41.4
Q ss_pred EEEEeeCCeeEEcHHH--HHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 82 AHFLAKEDGIIAGIAL--AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 82 a~i~aKe~gVvaG~~~--a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
..+.+++.|.+..++. ..++.+..| +.++..+.=|+.|.+|++++++.
T Consensus 196 ~~i~a~~~GYvq~Id~~~L~~~a~~~~--~~i~l~~~~G~fV~~g~pl~~v~ 245 (371)
T PF10011_consen 196 QPIRAPRSGYVQAIDYDRLVELAEEHD--VVIRLEVRPGDFVVEGTPLARVW 245 (371)
T ss_pred eEEecCCCcEEEEecHHHHHHHHHHCC--cEEEEEeCCCCeECCCCeEEEEe
Confidence 3499999999999876 555666666 89999999999999999999995
No 46
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=81.94 E-value=1.6 Score=37.62 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=14.9
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++|++++||.|++||+|+++++.
T Consensus 20 ~~~~~~~g~~v~~~~~~~~~e~~ 42 (371)
T PRK14875 20 AGWLVQEGDEVEKGDELLDVETD 42 (371)
T ss_pred EEEEcCCCCEeCCCCEEEEEEec
Confidence 55666666666666666666654
No 47
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=81.43 E-value=1.5 Score=40.71 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.7
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
=++|+++.||.|++||+|++|+-+
T Consensus 19 I~~W~~k~GD~V~~gd~L~eVeTD 42 (404)
T COG0508 19 IVEWLKKVGDKVKEGDVLVEVETD 42 (404)
T ss_pred EEEEecCCCCeecCCCeeEEEEcC
Confidence 378999999999999999999865
No 48
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=80.66 E-value=2.2 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EE-EEEcCCCCeecCCCEEEEEEe
Q 029760 110 KV-EWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 110 ~v-~~~~~DG~~v~~G~~il~v~G 132 (188)
.+ +|+++.|+.|++|+.+++++.
T Consensus 9 ~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 9 TVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 45 589999999999999999975
No 49
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=80.03 E-value=19 Score=34.09 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=45.9
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHHH-----------cCCCcEEEEEcCCCCeecCCCEEEEEEechhhh
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 137 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~--a~~if~~-----------l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~l 137 (188)
....+..+.|+++|.|.-++. +..+... .|+..-++++++-|+.|++||+++++..+-...
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~~~ 409 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDEER 409 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCHHH
Confidence 445788999999999988653 2233322 345677889999999999999999999655443
No 50
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=77.61 E-value=16 Score=34.30 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.5
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHHH-----------cCCCcEEEEEcCCCCeecCCCEEEEEEechhh
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 136 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~--a~~if~~-----------l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ 136 (188)
....+..+.|.++|.|..++. +..+... .|+..-+.++++-|+.|++||+|++++.+-..
T Consensus 329 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~~~ 401 (405)
T TIGR02644 329 KAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSDPI 401 (405)
T ss_pred CCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCCHh
Confidence 455788999999999998653 2223332 34567788999999999999999999966443
No 51
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=77.31 E-value=35 Score=32.33 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=45.6
Q ss_pred CcEEEEEEEeeCCeeEEcHHHH--HHHHHHcC-----------CCcEEEEEcCCCCeecCCCEEEEEEechhh
Q 029760 77 DMEVEAHFLAKEDGIIAGIALA--EMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 136 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~a--~~if~~l~-----------~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ 136 (188)
..+.+..+.|.++|.|..++-- ..+...+| +..-++++++-||.|++||+|+++..+...
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~~ 403 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANREN 403 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCChHH
Confidence 4557889999999999987632 33344443 356688899999999999999999955443
No 52
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=76.95 E-value=2.1 Score=40.77 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.4
Q ss_pred EEEEEcCCCCeecCCCEEEEEEech
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
=+.|.+++||.+.+||+|++|+=+=
T Consensus 55 IvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 55 IVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred eeeEeeccCCccCCCceEEEEeccc
Confidence 4789999999999999999998653
No 53
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=76.88 E-value=2.9 Score=33.17 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=17.2
Q ss_pred EEcCCCCeecCCCEEEEEE
Q 029760 113 WSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~ 131 (188)
.+++.||.|++||+|+.++
T Consensus 84 ~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 84 PFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred EeeccCCEEcCCCEEEEEE
Confidence 6888999999999999886
No 54
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=76.33 E-value=24 Score=33.97 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=48.4
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHHHcC----CCcEEEEEcCCCCeecCCCEEEEEEechhhhHH
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 139 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~--a~~if~~l~----~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~ 139 (188)
....+..+.|.++|.|..++. +..+...+| +..-++++++-||.|++||+|+++..+....+.
T Consensus 409 ~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~~~l~ 477 (493)
T TIGR02645 409 AGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESEGELD 477 (493)
T ss_pred CCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCHHHHH
Confidence 445788999999999999763 334444444 456688899999999999999999977665443
No 55
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=73.62 E-value=15 Score=34.81 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=46.1
Q ss_pred CcEEEEEEEeeCCeeEEcHHHHH--HHH-----------HHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhh
Q 029760 77 DMEVEAHFLAKEDGIIAGIALAE--MIF-----------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 137 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~a~--~if-----------~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~l 137 (188)
..+.+..+.|.++|.|..++... .+. ...|+..-++++++=|+.|++||+|+++..+-...
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~ 408 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAADESD 408 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCCHHH
Confidence 44578899999999999876432 222 12345677889999999999999999999655544
No 56
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=73.39 E-value=6.4 Score=26.76 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-.+|++..|+.+++|+.+++++..
T Consensus 15 ~~~~~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 15 TVVKWLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred EEEEEEcCCcCEECCCCEEEEEEeC
Confidence 3455999999999999999998764
No 57
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=73.11 E-value=32 Score=33.23 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=47.6
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHHHcC----CCcEEEEEcCCCCeecCCCEEEEEEechhhhH
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 138 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~--a~~if~~l~----~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll 138 (188)
....+..+.|.++|.|..++. +..+...+| +..-++++++=||.|++||+++++..+....+
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~~~l 477 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESEWRL 477 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCHHHH
Confidence 455788999999999999763 333444444 45668889999999999999999996655444
No 58
>PRK04350 thymidine phosphorylase; Provisional
Probab=73.08 E-value=28 Score=33.51 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=47.8
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHHHcC----CCcEEEEEcCCCCeecCCCEEEEEEechhhhH
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 138 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~--a~~if~~l~----~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll 138 (188)
....+..+.|.++|.|..++. +..+...+| +..-++++++=|+.|++||++++++.+....+
T Consensus 401 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~~~l 468 (490)
T PRK04350 401 LGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESEGEL 468 (490)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCHHHH
Confidence 445788999999999999763 334444443 45668889999999999999999997665544
No 59
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=72.49 E-value=4.4 Score=32.92 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.2
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++|++++||.|++||.++.++..
T Consensus 96 ~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 96 LRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred EEEEeCCCCEEcCCCEEEEEeec
Confidence 36899999999999999998754
No 60
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=72.29 E-value=2.5 Score=35.81 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEech
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
.=.+.+++||+.|++||+|+++.-.-
T Consensus 11 ~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 11 IVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEEEEccCcCEEeCCCEEEEEEeec
Confidence 33456899999999999999998654
No 61
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=71.94 E-value=4.8 Score=27.53 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.5
Q ss_pred EEEEcCCCCeecCCCEEEEEE
Q 029760 111 VEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~ 131 (188)
.++++.+|+.|.+|+.|++++
T Consensus 50 ~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 50 KKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEecCCCEECCCCEEEEEC
Confidence 467899999999999999874
No 62
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=71.73 E-value=4.4 Score=38.01 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=11.7
Q ss_pred EEEEcCCCCeecCCCEEEEEE
Q 029760 111 VEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~ 131 (188)
++|++++||.|++||+|++++
T Consensus 62 ~~w~v~~Gd~V~~Gd~L~~vE 82 (418)
T PTZ00144 62 VEWKKKVGDYVKEDEVICIIE 82 (418)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 455555555555555555554
No 63
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=70.75 E-value=12 Score=24.32 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=24.9
Q ss_pred EEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEE
Q 029760 80 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 130 (188)
Q Consensus 80 ~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v 130 (188)
....+.++.+|++. .+++.+|+.|.+|+.++++
T Consensus 35 ~~~~i~ap~~G~v~------------------~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 35 MENEVTAPVAGVVK------------------EILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEEEeCCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 34566677777765 3577899999999999864
No 64
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=68.71 E-value=6.2 Score=31.28 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=18.8
Q ss_pred EEEcCCCCeecCCCEEEEEEe
Q 029760 112 EWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G 132 (188)
+|++.+|+.|++|+.|+.++-
T Consensus 74 ~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 74 KVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred EEEeCCCCEECCCCEEEEEec
Confidence 589999999999999999874
No 65
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=67.31 E-value=6.3 Score=30.89 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.5
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.+++.||+|++||.|+++.
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4677899999999999999985
No 66
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=67.13 E-value=3.1 Score=38.56 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=53.2
Q ss_pred HHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 029760 101 IFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 165 (188)
Q Consensus 101 if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa 165 (188)
.++.++.+..-+..+.+|+.+-++-.+++|+|+-......|-..||++.++|=.+|-..+..+..
T Consensus 87 yl~~l~~s~~~~~aIsegSvvf~k~pli~i~Gp~~~~~l~E~plLnLvs~a~~~~~da~~~r~~~ 151 (420)
T KOG2511|consen 87 YLRGLNCSDHPEEAISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSEAYFKFVDADWHREVQ 151 (420)
T ss_pred HHhhcCCCcCchhhcccCceeccCCceEEEecchhheeeeechHHHHhhhHHheeeccccchhcc
Confidence 33433333333457899999999999999999999999999999999999999999888777665
No 67
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=66.97 E-value=6.1 Score=37.58 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=11.2
Q ss_pred EEcCCCCeecCCCEEEEEE
Q 029760 113 WSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~ 131 (188)
+++++||.|..|++|+.++
T Consensus 148 ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 148 FLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred EEeCCCCEecCCCEEEEec
Confidence 4455666666666666664
No 68
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=66.41 E-value=6.6 Score=33.54 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.0
Q ss_pred EEEEEcCCCCeecCCCEEEEEEechh
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGRAH 135 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~a~ 135 (188)
.+++++++|+.|++|++|+++.-+..
T Consensus 31 ~v~~~v~~G~~V~kG~~L~~ld~~~~ 56 (328)
T PF12700_consen 31 RVSVNVKEGDKVKKGQVLAELDSSDL 56 (328)
T ss_dssp EEEE-S-TTSEEETT-EEEEEE-HHH
T ss_pred EEEEEeCCcCEECCCCEEEEEEChhh
Confidence 44899999999999999999987643
No 69
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=66.01 E-value=33 Score=32.59 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=47.3
Q ss_pred CcEEEEEEEeeCCeeEEcHHHH--HHHHHHcC-----------CCcEEEEEcCCCCeecCCCEEEEEEechhhhH
Q 029760 77 DMEVEAHFLAKEDGIIAGIALA--EMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 138 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~a--~~if~~l~-----------~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll 138 (188)
..+-++.+.|.++|++..++.. ..+...+| ...-+..+++-|+.|++|++|+++.-..+..+
T Consensus 332 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~~~ 406 (435)
T COG0213 332 VAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEEIL 406 (435)
T ss_pred cCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCccch
Confidence 5568899999999999987533 23333443 34567789999999999999999998665544
No 70
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=65.23 E-value=21 Score=31.09 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEcCCCCeecCCCEEEEEEech
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
.++++.+|+.|++|++|+++....
T Consensus 28 ~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 28 KKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred EEEEccCCCEecCCcEEEEecCcH
Confidence 556899999999999999999863
No 71
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=64.81 E-value=18 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHcCCCcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 103 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 103 ~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+.+|. +..-++.+.|+.|++|+.++++++.
T Consensus 26 ~~lG~-i~~i~~~~~G~~v~~g~~l~~iEs~ 55 (96)
T cd06848 26 DLLGD-IVFVELPEVGTEVKKGDPFGSVESV 55 (96)
T ss_pred hhCCC-EEEEEecCCCCEEeCCCEEEEEEEc
Confidence 34553 5555677789999999999999976
No 72
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=63.97 E-value=7.9 Score=35.95 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=11.9
Q ss_pred EEcCCCCeecCCCEEEEEE
Q 029760 113 WSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~ 131 (188)
+++++|+.|+.|++|+.++
T Consensus 57 i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 57 ILFKEGDTVESGQVLAILE 75 (403)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 3556666666666666664
No 73
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=63.20 E-value=8.3 Score=30.31 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-+++++++||.|++|+.|+++-
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4667899999999999999874
No 74
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=59.87 E-value=9.5 Score=35.42 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=13.4
Q ss_pred EEcCCCCeecCCCEEEEEEe
Q 029760 113 WSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~G 132 (188)
+++++|+.|..|+.|++++-
T Consensus 59 i~v~~G~~V~~G~~l~~i~~ 78 (407)
T PRK05704 59 ILAEEGDTVTVGQVLGRIDE 78 (407)
T ss_pred EEeCCCCEeCCCCEEEEEec
Confidence 45667777777777777753
No 75
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=59.68 E-value=9.9 Score=31.44 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.++++||.|++||.|+++-
T Consensus 103 gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 103 GFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred ceEEEecCCCEEeCCCEEEEEc
Confidence 3677899999999999999884
No 76
>PRK07051 hypothetical protein; Validated
Probab=59.08 E-value=14 Score=26.22 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.7
Q ss_pred EEEcCCCCeecCCCEEEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~ 131 (188)
++.+++|+.|++|++|+++.
T Consensus 60 ~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 60 EFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEcCCcCEECCCCEEEEEe
Confidence 56889999999999999874
No 77
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=58.92 E-value=8.2 Score=30.60 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=17.1
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++++++.|+.|++||.|+++-
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-
T ss_pred ceEEEEeCCCEEECCCEEEEEc
Confidence 4777999999999999999874
No 78
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=58.63 E-value=38 Score=30.49 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=46.1
Q ss_pred CCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 76 LDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 76 ~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
.-.+++..++|..+|++.==.+...-++.++ .+.+ .-+.++..|++|+.|+.++=
T Consensus 75 ~~~~Grvnl~A~~~Gll~vd~~~l~~~N~~~-~i~~-at~~~~~~v~~g~~vA~~ri 129 (312)
T cd03522 75 EPAEGRVNLFAERAGLLKVDVEALDALNAID-AITL-ATLHNNTPVEAGQMVATVKI 129 (312)
T ss_pred CCccceEEEEECCCeeEEEcHHHHHhhhCCC-CEEE-EEcCCCeEeCCCCEEEEEEE
Confidence 4567999999999999998777888888887 3554 57999999999999988764
No 79
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=58.36 E-value=8.1 Score=34.49 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.8
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.|+++.||.|++||+|+.|+-.
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred cceeCCCCEecCCCEEEEEEee
Confidence 4899999999999999999864
No 80
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=57.96 E-value=10 Score=34.55 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.9
Q ss_pred EEEcCCCCeecCCCEEEEEEech
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++++++|+.|++||+|+++.-.-
T Consensus 74 ~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 74 KVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEcCCCCEECCCCEEEEECcHH
Confidence 46789999999999999998653
No 81
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=57.71 E-value=9.9 Score=33.06 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEcCCCCeecCCCEEEEEEech
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++++++|+.|++||+|+++.-+-
T Consensus 55 ~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 55 EVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred EEEeCCCCEEcCCCEEEEECchH
Confidence 46889999999999999998654
No 82
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=57.10 E-value=8.5 Score=34.20 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEechh
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGRAH 135 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~a~ 135 (188)
.-.++++++|+.|++|++++++.-...
T Consensus 53 ~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 53 IVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred EEEEEEeCCCCEecCCCeEEEEccchh
Confidence 444789999999999999999987754
No 83
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=56.71 E-value=9.8 Score=33.58 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEEcCCCCeecCCCEEEEEEech
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
.++++++|+.|++|++|+++.-+-
T Consensus 59 ~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 59 TQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEEeCCcCEEcCCCEEEEECcHH
Confidence 456899999999999999998754
No 84
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=56.29 E-value=9.2 Score=33.59 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEcCCCCeecCCCEEEEEEech
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
.++++++|+.|++|++|+++..+.
T Consensus 55 ~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 55 ASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEEcCCCCEEcCCCEEEEEChHH
Confidence 456899999999999999998873
No 85
>PRK07051 hypothetical protein; Validated
Probab=55.57 E-value=12 Score=26.43 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.7
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+++.+|+.|++|+.+++++..
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEc
Confidence 3688999999999999999885
No 86
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=54.93 E-value=11 Score=33.24 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.++++++|+.|++|++|+++.-.
T Consensus 60 ~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 60 VELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEEeCCCCEEcCCCEEEEECcH
Confidence 34589999999999999999865
No 87
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=54.67 E-value=11 Score=30.52 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.0
Q ss_pred EEEEcCCCCeecCCCEEEEEEe
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G 132 (188)
-.|++..|+.|++|++|+.++-
T Consensus 99 ~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 99 AKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CCccccCCCEeCCCCEEEEEEe
Confidence 3478999999999999998874
No 88
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=54.19 E-value=13 Score=30.56 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.++++||.|++||.|+++-
T Consensus 88 gF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 88 GFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred ceEEEeeCCCEEccCCEEEEEC
Confidence 4667899999999999999874
No 89
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=53.19 E-value=11 Score=34.83 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=32.9
Q ss_pred EEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEech
Q 029760 80 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 80 ~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++...+++-.|.|--..... ..+....++--+.++++|+.|++|++|+++.-..
T Consensus 41 ~~~~~~v~a~G~v~p~~~~~-~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 41 AKKEIVIRTTGTIEPAKILS-KIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EeeeEEEEEeEEEEecCceE-EEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 44455555555554322211 1222233355568999999999999999997653
No 90
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=52.29 E-value=13 Score=36.49 Aligned_cols=22 Identities=27% Similarity=0.219 Sum_probs=18.3
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++|++++||.|++||.|++++
T Consensus 221 v~~w~v~~Gd~V~~g~~l~~ve 242 (633)
T PRK11854 221 VTEVMVKVGDKVEAEQSLITVE 242 (633)
T ss_pred EEEEEecCCCeecCCCceEEEE
Confidence 4789999999999998888864
No 91
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=51.93 E-value=34 Score=29.05 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEcCCCCeecCCCEEEEEEech
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++++++|+.|++|++|+++..+.
T Consensus 39 ~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 39 KISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEcCCCCEEcCCCEEEEECCHH
Confidence 35789999999999999998764
No 92
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=51.17 E-value=12 Score=30.07 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.1
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-.|+++.|+.|++|++|+.++-.
T Consensus 97 ~~~~~v~~Gd~V~~Gq~l~~iEam 120 (155)
T PRK06302 97 DAPPFVEVGDTVKEGQTLCIIEAM 120 (155)
T ss_pred CCCcccCCCCEeCCCCEEEEEEec
Confidence 344789999999999999998763
No 93
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=51.01 E-value=16 Score=35.54 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=5.9
Q ss_pred CCcCchhHhh
Q 029760 176 TAPTLRLLDK 185 (188)
Q Consensus 176 T~PGlR~leK 185 (188)
..|-.|.+.+
T Consensus 279 asP~aR~lA~ 288 (590)
T TIGR02927 279 VTPLVRKLAA 288 (590)
T ss_pred CCchhHHHHH
Confidence 4566666554
No 94
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=50.77 E-value=19 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCeecCCCEEEEEE
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
.-.++++.+|+.|..||+|++++
T Consensus 117 ~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 117 VVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred EEEEEEecCCCccCCCCEEEEec
Confidence 44567889999999999999986
No 95
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=50.75 E-value=15 Score=25.59 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=27.7
Q ss_pred cEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEE
Q 029760 78 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 130 (188)
Q Consensus 78 ~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v 130 (188)
.+....+.|..+|++. ++++++|+.|..|++|+++
T Consensus 40 ~K~~~~v~a~~~G~i~------------------~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 40 MKMEMEVEAPVSGIIK------------------EILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEEBSSSEEEE------------------EESSTTTEEEETTSEEEEE
T ss_pred CccceEEECCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 3567788888888653 3578899999999999975
No 96
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=50.63 E-value=14 Score=35.55 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.1
Q ss_pred cEEEEEcCCCCeecCCCEEEEEE
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
.-++|+++.||.|++|+.|++++
T Consensus 131 ~i~~w~v~~Gd~V~~g~~l~~ve 153 (546)
T TIGR01348 131 TVIEVLVKVGDTVSADQSLITLE 153 (546)
T ss_pred EEeEEeeCCCCcccCCCeeEEEE
Confidence 34678888888888887777764
No 97
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=50.08 E-value=16 Score=35.51 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=13.6
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++|++++||.|++|+.+++++
T Consensus 129 I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 129 IARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred EEEEEecCCCEecCCCeeEEEe
Confidence 3556666666666666666554
No 98
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=49.96 E-value=17 Score=35.46 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEe
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
.-++|.+++||.|++||+|+.++-
T Consensus 527 ~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 527 SIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEe
Confidence 457899999999999999999874
No 99
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=49.51 E-value=17 Score=34.83 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=16.9
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|++++||.|++|+.|++++.+
T Consensus 134 ~i~~w~v~~Gd~V~~g~~l~~vetd 158 (547)
T PRK11855 134 EVIEWLVKVGDTVEEDQSLITVETD 158 (547)
T ss_pred EEeEEEeCCCCeecCCCeeEEEEec
Confidence 3466777777777777777766544
No 100
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=48.53 E-value=17 Score=33.13 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.0
Q ss_pred EEEEcCCCCeecCCCEEEEEEechh
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGRAH 135 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~a~ 135 (188)
.+.++++|+.|++|++|+++.-+..
T Consensus 70 ~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 70 IDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred EEEECCCcCEECCCCEEEEECcHHH
Confidence 3458999999999999999987644
No 101
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=46.92 E-value=47 Score=29.85 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+++++.|+.|++|++|+++.-.
T Consensus 76 ~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 76 ARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEECCCCCEEcCCCEEEEECCH
Confidence 3588999999999999999544
No 102
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=46.39 E-value=17 Score=27.43 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
...+..++.||.|+.||.|++..|.
T Consensus 40 ~~~~p~V~~Gd~V~~GQ~Ia~~~~~ 64 (101)
T PF13375_consen 40 APAEPVVKVGDKVKKGQLIAEAEGF 64 (101)
T ss_pred CcceEEEcCCCEEcCCCEEEecCCC
Confidence 4566789999999999999999874
No 103
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=46.36 E-value=22 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=12.8
Q ss_pred EEcCCCCeecCCCEEEEEE
Q 029760 113 WSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~ 131 (188)
+++++|+.+..|++|+.+.
T Consensus 55 i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 55 INFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 4566677777777777664
No 104
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=45.85 E-value=28 Score=23.86 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.7
Q ss_pred EEEcCCCCeecCCCEEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGKV 130 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v 130 (188)
++++.+|+.++.|+.|+.+
T Consensus 52 ~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 52 KVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EEEeCCCCEECCCCEEEEE
Confidence 4578999999999999986
No 105
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=45.68 E-value=33 Score=21.51 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=18.9
Q ss_pred EEEEcCCCCeecCCCEEEEEEe
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G 132 (188)
..|++.+|+.+.+|+.++.++-
T Consensus 18 ~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 18 VEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred EEEEECCCCEEcCCCEEEEEEe
Confidence 4688999999999999988854
No 106
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=45.13 E-value=24 Score=34.67 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 108 SLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 108 ~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+.-++|+++.||.|++||+|+.++-.
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEam 559 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAM 559 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 34578999999999999999999864
No 107
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=44.47 E-value=18 Score=31.93 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCeecCCCEEEE------------EEechhhhHHHHH
Q 029760 109 LKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAER 142 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~------------v~G~a~~ll~aER 142 (188)
++-+..+++||+|++|+.|++ ++|...+|-++||
T Consensus 39 ~~Pkm~VkeGD~Vk~Gq~LF~dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 39 MKPKMLVKEGDRVKAGQPLFEDKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred CCccEEeccCCEEeCCCeeEeeCCCCCcEEecCCCeEEEEEecCCC
Confidence 777889999999999998876 4566666666666
No 108
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=43.92 E-value=26 Score=32.10 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=11.2
Q ss_pred EEEEcCCCCeecCCCEEEEEE
Q 029760 111 VEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~ 131 (188)
++|++++|+.|.+|+.+++++
T Consensus 20 ~~w~v~~Gd~V~~g~~l~~ve 40 (411)
T PRK11856 20 VEWLVKVGDTVKEGQPLAEVE 40 (411)
T ss_pred EEEEeCCcCEeCCCCEEEEEE
Confidence 445555555555555555543
No 109
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=43.86 E-value=22 Score=31.73 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++++.+|+.|++|++|+++.-.
T Consensus 74 ~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 74 TLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEEcCCCCEEcCCCEEEEECcH
Confidence 4679999999999999999754
No 110
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=43.30 E-value=1e+02 Score=27.92 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++++.+|+.|++|++|+++.-.
T Consensus 78 ~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 78 KRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEcCCCCEecCCCEEEEECCH
Confidence 3589999999999999999744
No 111
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=42.86 E-value=25 Score=32.31 Aligned_cols=22 Identities=18% Similarity=0.441 Sum_probs=19.5
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++++++|+.|++||+|+++.-+
T Consensus 100 ~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 100 ALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEECCCCCEecCCCEEEEECcH
Confidence 4579999999999999999765
No 112
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=41.36 E-value=28 Score=34.15 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=11.0
Q ss_pred EEcCCCCeecCCCEEEEEEec
Q 029760 113 WSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~G~ 133 (188)
+++++|+.|+.|++|++++..
T Consensus 57 i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 57 IKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred EEeCCCCEEeCCCEEEEEecc
Confidence 445555555555555555443
No 113
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=40.71 E-value=28 Score=31.35 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+++.+|+.|++|++|+++.-.
T Consensus 74 ~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 74 KRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEcCCcCEecCCCEEEEECcH
Confidence 3578999999999999999854
No 114
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=40.20 E-value=29 Score=33.97 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|.+++|+.|++|++|+.++..
T Consensus 534 ~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 534 NIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4578999999999999999998754
No 115
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=40.00 E-value=72 Score=26.69 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEe
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
.-.++++++|+.|++|+.++++.-
T Consensus 76 ~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 76 IVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred EEEEEEccCCCeecCCCEEEEECC
Confidence 566789999999999999999987
No 116
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=39.81 E-value=33 Score=32.92 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|++++|+.|++|++|++++..
T Consensus 17 ~i~~~~v~~Gd~V~~g~~l~~iEt~ 41 (547)
T PRK11855 17 EVIEWLVKEGDTVEEDQPLVTVETD 41 (547)
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEec
Confidence 3467899999999999999988654
No 117
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=39.25 E-value=55 Score=30.09 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.1
Q ss_pred EE-cCCCCeecCCCEEEEEEech
Q 029760 113 WS-LKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 113 ~~-~~DG~~v~~G~~il~v~G~a 134 (188)
++ +..|+.|++|++|+++.-+-
T Consensus 137 l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 137 VYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EEecCCCCEECCCCEEEEEeCHH
Confidence 45 89999999999999998663
No 118
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=39.14 E-value=29 Score=32.47 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=11.4
Q ss_pred EEcCCCCe-ecCCCEEEEEE
Q 029760 113 WSLKDGDH-VHKGLQFGKVS 131 (188)
Q Consensus 113 ~~~~DG~~-v~~G~~il~v~ 131 (188)
+++++|+. +..|+.++.+.
T Consensus 56 i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 56 ILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred EEECCCCEEecCCCEEEEEe
Confidence 34556666 66666666664
No 119
>PRK06748 hypothetical protein; Validated
Probab=37.17 E-value=44 Score=24.51 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=17.5
Q ss_pred EEEcCCCCeecCCCEEEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~ 131 (188)
++++++|+.+..|++|+.+.
T Consensus 55 ~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 55 SLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred EEEeCCCCEECCCCEEEEEE
Confidence 35678999999999999985
No 120
>PF00936 BMC: BMC domain; InterPro: IPR000249 This domain is found in a variety of polyhedral organelle shell proteins, including CsoS1A, CsoS1B and CsoS1C of Thiobacillus neapolitanus (Halothiobacillus neapolitanus) and their orthologs from other bacteria. Some autotrophic and non-autotrophic organisms form polyhedral organelles, carboxysomes/enterosomes []. The best studied is the carboxysome of Halothiobacillus neapolitanus, which is composed of at least 9 proteins: six shell proteins, CsoS1A, CsoS1B, CsoS1C, Cso2A, Cso2B and CsoS3 (carbonic anhydrase) [], one protein of unknown function and the large and small subunits of RuBisCo (CbbL and Cbbs). Carboxysomes appear to be approximately 120 nm in diameter, most often observed as regular hexagons, with a solid interior bounded by a unilamellar protein shell. The interior is filled with type I RuBisCo, which is composed of 8 large subunits and 8 small subunits; it accounts for 60% of the carboxysomal protein, which amounts to approximately 300 molecules of enzyme per carboxysome. Carboxysomes are required for autotrophic growth at low CO2 concentrations and are thought to function as part of a CO2-concentrating mechanism [, ]. Polyhedral organelles, enterosomes, from non-autotrophic organisms are involved in coenzyme B12-dependent 1,2-propanediol utilisation (e.g., in Salmonella enterica []) and ethanolamine utilisation (e.g., in Salmonella typhimurium []). Genes needed for enterosome formation are located in the 1,2-propanediol utilisation pdu [, ] or ethanolamine utilisation eut [, ] operons, respectively. Although enterosomes of non-autotrophic organisms are apparently related to carboxysomes structurally, a functional relationship is uncertain. A role in CO2 concentration, similar to that of the carboxysome, is unlikely since there is no known association between CO2 and coenzyme B12-dependent 1,2-propanediol or ethanolamine utilisation []. It seems probable that entrosomes help protect the cells from reactive aldehyde species in the degradation pathways of 1,2-propanediol and ethanolamine [].; PDB: 3F56_C 3FCH_A 3I87_A 3GFH_B 3I82_A 3MPV_A 3IO0_A 4AXJ_B 3N79_A 2G13_A ....
Probab=35.93 E-value=1.1e+02 Score=21.51 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=42.0
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
.++..|+..+...++..+ +++.....-+ .|...+.++|+..++-.+-+.+.+.++.
T Consensus 9 ~~~~~~i~aaD~alKaa~--V~l~~~~~~~----~g~~~~~i~G~vs~V~~Av~a~~~~~~~ 64 (75)
T PF00936_consen 9 KGIAAAIVAADAALKAAN--VELVEIELIC----GGKVTVIITGDVSAVKAAVDAAEEAAGK 64 (75)
T ss_dssp ESHHHHHHHHHHHHHHSS--EEEEEEEEES----TTEEEEEEEESHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCC--EEEEEEEecC----CCeEEEEEEECHHHHHHHHHHHHHHHhh
Confidence 345667888889999876 6664333332 6889999999999998888888777654
No 121
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=35.60 E-value=40 Score=27.17 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCeecCCCEEEEEE
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
.-.++++.+|+.|..|+.|++++
T Consensus 134 ~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 134 KVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEEEeCCCCEECCCCEEEEEC
Confidence 33568999999999999999874
No 122
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=35.44 E-value=37 Score=35.97 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.1
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-++|++++||.|++||+|+.++-.
T Consensus 1143 v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1143 FWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred EEEEEeCCCCEECCCCEEEEEEec
Confidence 467999999999999999998753
No 123
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=35.40 E-value=41 Score=27.06 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCeecCCCEEEEEE
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
.-.++++++|+.|..|+.|++++
T Consensus 133 ~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 133 VVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEEEcCCCCEeCCCCEEEEeC
Confidence 44668999999999999999874
No 124
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=35.31 E-value=40 Score=32.49 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=16.2
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-++|++++|+.|+.|+.|++++..
T Consensus 16 i~~~~v~~Gd~V~~G~~l~~vet~ 39 (546)
T TIGR01348 16 VIEVLVKPGDKVEAGQSLITLESD 39 (546)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEcc
Confidence 356677777777777777776543
No 125
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=35.19 E-value=40 Score=32.00 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=17.8
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-.+|++++|+.|++|+.+++++-+
T Consensus 19 i~~w~v~~Gd~V~~gd~l~~iETd 42 (464)
T PRK11892 19 LAKWLKKEGDKVKSGDVIAEIETD 42 (464)
T ss_pred EEEEEecCCCEecCCCeEEEEEec
Confidence 356788888888888888877543
No 126
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=34.70 E-value=42 Score=32.73 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-++|+++.||.|+.|+.|++++.+
T Consensus 19 i~~w~v~~Gd~V~~g~~l~~vEtd 42 (590)
T TIGR02927 19 ITQWLKAEGDTVELDEPLLEVSTD 42 (590)
T ss_pred EEEEEECCCCEEeCCCeEEEEEec
Confidence 467899999999999998888544
No 127
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=34.51 E-value=39 Score=31.05 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-+++.+.|.+.|++||+|+++-=.
T Consensus 63 ~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 63 RVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEEEecCCCEecCCCeEEEECcH
Confidence 3456789999999999999999754
No 128
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=34.13 E-value=36 Score=24.62 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=19.6
Q ss_pred EechhhhHHHHHHHHHHHHHHhH
Q 029760 131 SGRAHSIVIAERVVLNFMQRMSG 153 (188)
Q Consensus 131 ~G~a~~ll~aERv~LN~L~~~SG 153 (188)
+..+..|-.+|++++++|..++.
T Consensus 47 ~~~~~~i~SGW~~if~il~~aa~ 69 (86)
T PF09324_consen 47 QSRGENIKSGWKVIFSILRAAAK 69 (86)
T ss_pred HHhHHHHHhccHHHHHHHHHHHh
Confidence 45567899999999999998876
No 129
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=32.70 E-value=60 Score=23.84 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=31.7
Q ss_pred cCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 115 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 115 ~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
..||+.+..|..++.+.|...+|-.|.+.+.+-++.
T Consensus 41 ~~~~~l~t~GGRvl~v~~~g~tl~eA~~~ay~~i~~ 76 (93)
T PF02843_consen 41 KEDGQLVTNGGRVLTVVALGDTLEEAREKAYEAIEK 76 (93)
T ss_dssp EETTEEEE-SSEEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred eeCCEEEecCCeEEEEEEEcCCHHHHHHHHHHHHhc
Confidence 459999999999999999999999999999887764
No 130
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=32.66 E-value=69 Score=24.20 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.2
Q ss_pred eecCCCEEEEEEechh
Q 029760 120 HVHKGLQFGKVSGRAH 135 (188)
Q Consensus 120 ~v~~G~~il~v~G~a~ 135 (188)
.|++|++|+++.|...
T Consensus 75 ~v~~G~iifEi~~~~~ 90 (112)
T cd01433 75 RVKPGQILFEVRGVPE 90 (112)
T ss_pred EECCCCEEEEEeCcCc
Confidence 5789999999999975
No 131
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=31.27 E-value=9.4 Score=35.76 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=9.8
Q ss_pred EEEcCCCCeecCCCEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGK 129 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~ 129 (188)
...+.+||.|++|+++++
T Consensus 42 ~mkV~~gD~VkkGq~LfE 59 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE 59 (447)
T ss_pred cceeccCCeeeccceeee
Confidence 334456666666655544
No 132
>PRK01202 glycine cleavage system protein H; Provisional
Probab=29.54 E-value=1.1e+02 Score=23.67 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=27.2
Q ss_pred eEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 91 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 91 VvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+.-|+.... .+.+|.=..++ +.+.|+.|++|+.+++|++.
T Consensus 24 ~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~~~~IEs~ 63 (127)
T PRK01202 24 ATVGITDHA--QEQLGDIVFVE-LPEVGDEVKAGETFGVVESV 63 (127)
T ss_pred EEEeeCHHH--HhhcCCeeEEE-cCCCCCEecCCCEEEEEEEc
Confidence 566765443 44555323444 44679999999999999874
No 133
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=29.51 E-value=53 Score=23.33 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=15.2
Q ss_pred EcCCCCeecCCCEEEEEEec
Q 029760 114 SLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 114 ~~~DG~~v~~G~~il~v~G~ 133 (188)
.++.|+.|++|+.|..+-..
T Consensus 56 ~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBSC
T ss_pred cceecccccCCCEEEecCCC
Confidence 37899999999999988743
No 134
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=29.51 E-value=48 Score=32.47 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.++++||+|++||.++++.
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEec
Confidence 3667899999999999999884
No 135
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=29.32 E-value=60 Score=34.33 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 108 SLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 108 ~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
+.-++|+++.||.|++||+|++++-
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEA 1107 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEe
Confidence 3457899999999999999999985
No 136
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.40 E-value=59 Score=31.80 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-+.|.+++|+.|++|++|++++
T Consensus 533 v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 533 VVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred EEEEEeCCCCEECCCCEEEEEe
Confidence 4678999999999999999986
No 137
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=27.95 E-value=51 Score=32.60 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.1
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.++++||+|++||.++++.
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEc
Confidence 3667899999999999999884
No 138
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=27.16 E-value=54 Score=32.63 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.3
Q ss_pred EEEEcCCCCeecCCCEEEEEE
Q 029760 111 VEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~ 131 (188)
++.++++||.|++||.|+++.
T Consensus 582 F~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 582 FKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred ceEEecCCCEEcCCCEEEEEc
Confidence 556789999999999999884
No 139
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
Probab=26.95 E-value=2e+02 Score=19.17 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER 142 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aER 142 (188)
.....+-+..| +++... +.......+.+++++|++.++..|=.
T Consensus 20 ~~i~~i~~~tg--a~I~i~--~~~~~~~~~r~v~I~G~~~~v~~A~~ 62 (65)
T cd02396 20 STIKEIREETG--AKIRVS--KSVLPGSTERVVTISGKPSAVQKALL 62 (65)
T ss_pred HHHHHHHHHHC--CEEEEc--CCCCCCCCceEEEEEeCHHHHHHHHH
Confidence 56777777777 666543 32224567899999999988877643
No 140
>PF13437 HlyD_3: HlyD family secretion protein
Probab=25.82 E-value=98 Score=22.07 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.2
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+.+..|+.+.+|+.|+++...
T Consensus 12 ~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 12 SINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EEeCCCCCEECCCCEEEEEEcc
Confidence 3456789999999999998865
No 141
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=25.74 E-value=74 Score=25.17 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=17.3
Q ss_pred EEEcCCCCeecCCCEEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGKV 130 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v 130 (188)
++++..|+.+..|+.|+++
T Consensus 111 ~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 111 AIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEEeCCCCEeCCCCEEEEe
Confidence 5789999999999999987
No 142
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=25.51 E-value=80 Score=27.50 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=18.7
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++..++-|+.|++||+|+++.=+
T Consensus 234 ~~~~~~~G~~V~~G~~lg~i~dp 256 (288)
T cd06254 234 WYPFVKAGDTVQKGALLGYVTDY 256 (288)
T ss_pred EEEecCCCCEecCCCEEEEEECC
Confidence 44567789999999999999543
No 143
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=25.35 E-value=1.7e+02 Score=22.44 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=25.1
Q ss_pred eEEcH-HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 91 IIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 91 VvaG~-~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+.-|+ +++...| |.=..++ +-+.|+.|++|+.+++++..
T Consensus 17 ~~vGiT~~aq~~l---G~i~~v~-lp~~G~~V~~g~~i~~IEs~ 56 (110)
T TIGR03077 17 VRLGLTSRMQENL---GNILHID-LPSVGSSCKEGEVLVILESS 56 (110)
T ss_pred EEEeeCHHHHHhc---CCEEEEE-CCCCCCEEcCCCEEEEEEec
Confidence 44554 4444444 4213343 45679999999999999864
No 144
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=24.88 E-value=68 Score=24.48 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=17.1
Q ss_pred CCCCChhhHHHHHHHHHHhhcCCCCCcccc
Q 029760 42 LPSHPTYDLKGVVKLALAEDAGDRGDVTCM 71 (188)
Q Consensus 42 ~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~ 71 (188)
|+.+| .+++.-|.. |++|+- -||||-.
T Consensus 2 ~s~LP-~evq~~L~~-L~~el~-~GdiT~K 28 (111)
T PF06464_consen 2 PSSLP-PEVQNRLQE-LDLELE-EGDITQK 28 (111)
T ss_pred cccCC-HHHHHHHHH-HHHhhh-cCcchHH
Confidence 34455 346666666 677787 4999953
No 145
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=24.79 E-value=85 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.5
Q ss_pred EEEEcCCCCeecCCCEEEEE
Q 029760 111 VEWSLKDGDHVHKGLQFGKV 130 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v 130 (188)
.++++++|+.|..|+.|+++
T Consensus 133 ~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 133 KKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred EEEEcCCCCEECCCCEEEEe
Confidence 45679999999999999986
No 146
>PRK00624 glycine cleavage system protein H; Provisional
Probab=23.81 E-value=1.1e+02 Score=23.59 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=25.6
Q ss_pred eeEEcHH-HHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 90 GIIAGIA-LAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 90 gVvaG~~-~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+.-|+. ++...+ |.=..++ +.+.|+.|++|+.|++|+..
T Consensus 18 ~~~vGiT~~a~~~l---G~i~~v~-lp~~G~~V~~g~~i~~IEs~ 58 (114)
T PRK00624 18 IVRLGLTSKMQENL---GNILHID-LPSVGSFCKEGEVLVILESS 58 (114)
T ss_pred EEEEeeCHHHHHhc---CCEEEEE-CCCCCCEEeCCCEEEEEEec
Confidence 3556654 444444 4212343 45679999999999999864
No 147
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=23.20 E-value=1.7e+02 Score=22.43 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=21.5
Q ss_pred eEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 91 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 91 VvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+.-|+.... .+.+|.=..++ ..+.|+.+++|+.++.+++.
T Consensus 18 ~~vGit~~a--~~~lG~i~~v~-lp~~g~~~~~g~~~~~ies~ 57 (122)
T PF01597_consen 18 VRVGITDFA--QDELGDIVYVE-LPKVGTKLKKGDPFASIESS 57 (122)
T ss_dssp EEEEE-HHH--HHHH-SEEEEE--B-TT-EE-TTSEEEEEEES
T ss_pred EEEEECchH--hhcCCceEEEE-EccCCCEEecCCcEEEEEEC
Confidence 334544333 34445313444 56789999999999999974
No 148
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=23.13 E-value=95 Score=27.26 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEcCCCCeecCCCEEEEEEechhh
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGRAHS 136 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~a~~ 136 (188)
++..++-|+.|++||.|++|.-+..+
T Consensus 242 ~~~~~~~G~~V~~Gq~lg~I~dp~g~ 267 (293)
T cd06255 242 FEPSVPAGDTIPAGQPLGRVVDLYGA 267 (293)
T ss_pred EEEecCCCCEecCCCEEEEEECCCCC
Confidence 44567889999999999999866543
No 149
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=23.13 E-value=74 Score=30.04 Aligned_cols=70 Identities=26% Similarity=0.354 Sum_probs=41.5
Q ss_pred cCCCCCChhhHHHHHHHHHHhhcCCCCCcccc----cccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEc
Q 029760 40 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCM----ATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL 115 (188)
Q Consensus 40 ~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~----~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~ 115 (188)
+.-|.-...-.+-.|..||.. .||--.+ +.+. ..+.++.+-+...|++. ++++
T Consensus 75 v~vP~faESiteG~l~~~lK~----~Gd~v~~DE~va~IE-TDK~tv~V~sP~sGvi~------------------e~lv 131 (457)
T KOG0559|consen 75 VEVPPFAESITEGDLAQWLKK----VGDRVNEDEAVAEIE-TDKTTVEVPSPASGVIT------------------ELLV 131 (457)
T ss_pred EecCCcccccccchHHHHhhC----cccccccchhheeee-ccceeeeccCCCcceee------------------EEec
Confidence 344444444455566666643 1332210 1122 23456666666666653 3489
Q ss_pred CCCCeecCCCEEEEEEe
Q 029760 116 KDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 116 ~DG~~v~~G~~il~v~G 132 (188)
+|||.|.+|+.|+.++-
T Consensus 132 k~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 132 KDGDTVTPGQKLAKISP 148 (457)
T ss_pred CCCCcccCCceeEEecC
Confidence 99999999999999975
No 150
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=22.52 E-value=1e+02 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 107 PSLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 107 ~~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
|+.-+.+.+.+|+.|.+||+|+.++.
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEe
Confidence 35667789999999999999998874
No 151
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=22.26 E-value=71 Score=33.22 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 107 PSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 107 ~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
++.-+++.++.|+.|++||.++.++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehh
Confidence 3567889999999999999999876
No 152
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=22.17 E-value=3e+02 Score=22.71 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.3
Q ss_pred CCeecCCCEEEEEEech
Q 029760 118 GDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 118 G~~v~~G~~il~v~G~a 134 (188)
|+.|++|++|+++.-+-
T Consensus 1 G~~VkkG~~L~~ld~~~ 17 (265)
T TIGR00999 1 GDPVKKGQVLAVVDSPE 17 (265)
T ss_pred CCcccCCCEEEEEccHH
Confidence 89999999999999853
No 153
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=22.09 E-value=1e+02 Score=26.84 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.0
Q ss_pred EEEEcCCCCeecCCCEEEEEEech
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++..++-|+.|++||+|+++.-+.
T Consensus 230 ~~~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 230 LRSLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred EEEecCCCCEECCCCEEEEEECCC
Confidence 556788899999999999997653
No 154
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=20.87 E-value=52 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=15.6
Q ss_pred CccCCCCCChhhHHHHHHHHHHhhcCCCCC
Q 029760 38 PAIKLPSHPTYDLKGVVKLALAEDAGDRGD 67 (188)
Q Consensus 38 ~~~~~~~~~~~~~~~~i~~~L~ED~~~~gD 67 (188)
|.||.=.++..-++.+|+.++.+|-.+|||
T Consensus 1 MiIP~~~L~~eTL~nLIeefv~ReGTdyG~ 30 (70)
T PF06794_consen 1 MIIPYQQLPPETLNNLIEEFVLREGTDYGE 30 (70)
T ss_dssp EE--GGGS-HHHHHHHHHHHHH--------
T ss_pred CcCChHHCCHHHHHHHHHHHHHccCcccCc
Confidence 445555677788999999999999776665
No 155
>PRK12999 pyruvate carboxylase; Reviewed
Probab=20.33 E-value=1e+02 Score=32.63 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEe
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
.-+++++++||.|++||+|+.++-
T Consensus 1086 ~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1086 SVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred EEEEEEcCCCCEECCCCEEEEEEc
Confidence 346889999999999999999874
No 156
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=20.31 E-value=1.6e+02 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=27.1
Q ss_pred EEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEech
Q 029760 81 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 81 ~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a 134 (188)
...+.|..+|+|. ...+..|+.+.+|+.|+++..+.
T Consensus 134 ~~~i~AP~~G~V~------------------~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 134 YTEIRAPFDGTIG------------------RRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred cCEEECCCCcEEE------------------EEEcCCCceeCCCCcEEEEEcCC
Confidence 4567777787773 23567899999999999887654
No 157
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=20.08 E-value=1e+02 Score=27.35 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.5
Q ss_pred EEEEEcCCCCeecCCCEEEEEEe
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G 132 (188)
-++..++-|+.|++||+|+.+.+
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC
Confidence 56678899999999999999976
Done!