Query 029760
Match_columns 188
No_of_seqs 188 out of 1190
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0g_A Nicotinate-nucleotide p 100.0 2.5E-47 8.6E-52 334.6 13.4 148 40-188 16-165 (300)
2 1x1o_A Nicotinate-nucleotide p 100.0 5.1E-46 1.7E-50 324.3 15.4 142 46-188 10-153 (286)
3 3tqv_A Nicotinate-nucleotide p 100.0 1.6E-45 5.5E-50 321.6 17.6 141 45-188 14-156 (287)
4 1o4u_A Type II quinolic acid p 100.0 2.1E-44 7.3E-49 314.1 16.4 143 41-188 7-150 (285)
5 3gnn_A Nicotinate-nucleotide p 100.0 6.1E-44 2.1E-48 313.1 15.1 138 49-188 28-167 (298)
6 3paj_A Nicotinate-nucleotide p 100.0 4.8E-43 1.6E-47 309.9 16.7 139 49-188 45-189 (320)
7 1qpo_A Quinolinate acid phosph 100.0 7.3E-43 2.5E-47 304.1 15.2 139 48-188 8-152 (284)
8 2b7n_A Probable nicotinate-nuc 100.0 1.5E-40 5.3E-45 287.1 16.0 136 49-188 2-139 (273)
9 2jbm_A Nicotinate-nucleotide p 100.0 8.5E-40 2.9E-44 286.1 16.4 135 49-188 16-154 (299)
10 1qap_A Quinolinic acid phospho 100.0 1.2E-39 4.2E-44 285.1 15.9 139 48-188 20-166 (296)
11 3c2e_A Nicotinate-nucleotide p 100.0 2.8E-39 9.6E-44 282.2 15.1 135 49-188 12-156 (294)
12 2i14_A Nicotinate-nucleotide p 99.9 4.8E-28 1.6E-32 218.8 7.2 132 51-188 15-157 (395)
13 2i1o_A Nicotinate phosphoribos 99.9 7.9E-28 2.7E-32 217.6 8.3 132 51-188 15-161 (398)
14 2f7f_A Nicotinate phosphoribos 99.8 1.7E-18 5.8E-23 160.4 11.6 114 74-188 29-179 (494)
15 3os4_A Naprtase, nicotinate ph 98.0 5.3E-06 1.8E-10 75.3 5.9 103 77-179 32-182 (407)
16 4hl7_A Naprtase, nicotinate ph 97.6 9.7E-05 3.3E-09 67.8 7.2 102 77-178 36-191 (446)
17 1yir_A Naprtase 2, nicotinate 97.6 0.00021 7.1E-09 64.7 9.3 94 77-178 36-185 (408)
18 3dhf_A Nicotinamide phosphorib 97.3 0.0006 2E-08 63.1 7.6 54 109-164 114-171 (484)
19 2im5_A Nicotinate phosphoribos 97.1 0.0017 5.9E-08 58.4 9.1 93 77-178 27-172 (394)
20 1vlp_A Naprtase, nicotinate ph 96.8 0.0013 4.6E-08 60.0 5.6 97 78-178 42-196 (441)
21 1ybe_A Naprtase, nicotinate ph 96.6 0.0081 2.8E-07 55.0 9.2 56 122-178 129-208 (449)
22 3crk_C Dihydrolipoyllysine-res 87.7 0.43 1.5E-05 33.1 3.2 25 109-133 21-45 (87)
23 1iyu_A E2P, dihydrolipoamide a 87.2 0.45 1.6E-05 32.2 3.1 23 111-133 16-38 (79)
24 1z6h_A Biotin/lipoyl attachmen 87.2 0.51 1.7E-05 31.0 3.2 23 111-133 11-33 (72)
25 2dnc_A Pyruvate dehydrogenase 86.2 0.53 1.8E-05 33.8 3.1 25 109-133 23-47 (98)
26 2d5d_A Methylmalonyl-COA decar 85.7 0.68 2.3E-05 30.3 3.2 22 112-133 18-39 (74)
27 1qjo_A Dihydrolipoamide acetyl 85.3 0.57 2E-05 31.6 2.8 25 109-133 16-40 (80)
28 2dne_A Dihydrolipoyllysine-res 84.0 0.64 2.2E-05 34.1 2.7 25 109-133 23-47 (108)
29 1k8m_A E2 component of branche 83.7 0.56 1.9E-05 33.2 2.3 25 109-133 20-44 (93)
30 2dsj_A Pyrimidine-nucleoside ( 83.3 14 0.00047 33.4 11.7 58 77-135 324-394 (423)
31 1ghj_A E2, E2, the dihydrolipo 83.3 0.53 1.8E-05 31.8 1.9 24 110-133 18-41 (79)
32 1dcz_A Transcarboxylase 1.3S s 82.7 1.1 3.7E-05 29.8 3.3 22 112-133 21-42 (77)
33 2dn8_A Acetyl-COA carboxylase 82.5 0.85 2.9E-05 32.5 2.8 21 112-132 30-50 (100)
34 1gjx_A Pyruvate dehydrogenase; 82.4 0.67 2.3E-05 31.4 2.1 24 110-133 18-41 (81)
35 2kcc_A Acetyl-COA carboxylase 82.2 0.92 3.2E-05 31.3 2.8 23 110-132 16-38 (84)
36 1bdo_A Acetyl-COA carboxylase; 81.8 0.64 2.2E-05 31.4 1.9 22 112-133 24-45 (80)
37 1brw_A PYNP, protein (pyrimidi 81.1 13 0.00045 33.6 10.8 61 76-136 330-403 (433)
38 1y8o_B Dihydrolipoyllysine-res 81.0 1.2 4E-05 34.0 3.2 25 109-133 43-67 (128)
39 2l5t_A Lipoamide acyltransfera 80.8 0.53 1.8E-05 31.6 1.1 24 110-133 18-41 (77)
40 2ejm_A Methylcrotonoyl-COA car 79.9 1.3 4.3E-05 31.6 3.0 22 112-133 27-48 (99)
41 2k32_A A; NMR {Campylobacter j 78.9 1.6 5.6E-05 31.3 3.3 22 112-133 14-35 (116)
42 3h5q_A PYNP, pyrimidine-nucleo 77.5 6.9 0.00024 35.5 7.7 65 77-141 334-411 (436)
43 2jku_A Propionyl-COA carboxyla 77.2 1.1 3.8E-05 31.6 2.0 22 112-133 38-59 (94)
44 1uou_A Thymidine phosphorylase 75.4 14 0.00049 33.8 9.3 60 77-136 368-438 (474)
45 2tpt_A Thymidine phosphorylase 73.5 10 0.00035 34.4 7.7 62 76-137 335-409 (440)
46 1pmr_A Dihydrolipoyl succinylt 73.0 0.39 1.3E-05 32.7 -1.4 24 110-133 19-42 (80)
47 2k7v_A Dihydrolipoyllysine-res 62.1 0.93 3.2E-05 31.2 -1.3 23 111-133 14-36 (85)
48 1zy8_K Pyruvate dehydrogenase 60.6 1.8 6.1E-05 35.9 0.0 22 110-131 20-41 (229)
49 2d5d_A Methylmalonyl-COA decar 58.7 18 0.00062 23.1 4.8 34 80-131 41-74 (74)
50 3our_B EIIA, phosphotransferas 57.8 6.9 0.00024 31.8 3.0 22 110-131 117-138 (183)
51 3fpp_A Macrolide-specific effl 56.5 6.4 0.00022 32.9 2.8 22 112-133 44-65 (341)
52 2f1m_A Acriflavine resistance 55.6 4.2 0.00014 33.0 1.4 23 112-134 35-57 (277)
53 2gpr_A Glucose-permease IIA co 55.3 8.2 0.00028 30.2 3.0 22 110-131 90-111 (154)
54 3dva_I Dihydrolipoyllysine-res 54.5 2.6 8.9E-05 37.9 0.0 21 111-131 20-40 (428)
55 1j5k_A Heterogeneous nuclear r 53.8 50 0.0017 22.6 7.1 70 79-153 13-86 (89)
56 3lnn_A Membrane fusion protein 52.7 8.2 0.00028 32.5 2.8 22 112-133 70-91 (359)
57 1f3z_A EIIA-GLC, glucose-speci 52.1 9.9 0.00034 30.0 3.0 22 110-131 95-116 (161)
58 1bdo_A Acetyl-COA carboxylase; 49.9 12 0.00042 24.7 2.9 34 80-131 47-80 (80)
59 1zzk_A Heterogeneous nuclear r 49.3 57 0.002 21.9 6.6 54 95-153 26-79 (82)
60 1ax3_A Iiaglc, glucose permeas 47.2 9.1 0.00031 30.2 2.1 22 110-131 95-116 (162)
61 2l5t_A Lipoamide acyltransfera 47.1 18 0.00061 23.7 3.3 19 113-131 58-76 (77)
62 3n6r_A Propionyl-COA carboxyla 47.0 12 0.00042 35.3 3.3 25 108-132 621-645 (681)
63 2hh3_A KH-type splicing regula 45.4 82 0.0028 22.6 7.1 50 96-150 31-80 (106)
64 1vf7_A Multidrug resistance pr 45.1 9.6 0.00033 32.6 2.1 22 113-134 57-78 (369)
65 4dk0_A Putative MACA; alpha-ha 43.0 7.2 0.00025 32.9 1.0 23 112-134 45-67 (369)
66 1iyu_A E2P, dihydrolipoamide a 41.6 23 0.00078 23.4 3.2 21 113-133 55-75 (79)
67 1zko_A Glycine cleavage system 40.4 50 0.0017 25.1 5.3 40 89-132 30-70 (136)
68 1ghj_A E2, E2, the dihydrolipo 40.2 20 0.00069 23.6 2.7 20 113-132 58-77 (79)
69 1x4m_A FAR upstream element bi 40.1 90 0.0031 21.5 6.4 51 96-149 35-85 (94)
70 3ne5_B Cation efflux system pr 39.3 18 0.00062 31.6 3.0 21 113-133 135-156 (413)
71 3vot_A L-amino acid ligase, BL 39.1 47 0.0016 28.4 5.6 69 80-150 337-410 (425)
72 2auk_A DNA-directed RNA polyme 38.9 16 0.00056 29.2 2.4 19 112-130 63-81 (190)
73 3hbl_A Pyruvate carboxylase; T 38.7 18 0.00063 36.4 3.2 23 110-132 1088-1110(1150)
74 3krm_A Insulin-like growth fac 36.8 1.2E+02 0.004 22.5 6.9 54 95-151 104-157 (163)
75 3va7_A KLLA0E08119P; carboxyla 36.6 20 0.00068 36.5 3.1 22 111-132 1179-1200(1236)
76 3gku_A Probable RNA-binding pr 36.5 67 0.0023 26.5 5.9 101 49-154 13-123 (225)
77 2auk_A DNA-directed RNA polyme 35.2 22 0.00076 28.4 2.7 21 111-131 166-186 (190)
78 2k7v_A Dihydrolipoyllysine-res 34.8 28 0.00097 23.4 2.8 37 79-133 37-73 (85)
79 1k8m_A E2 component of branche 34.6 33 0.0011 23.7 3.3 23 112-134 60-82 (93)
80 2xha_A NUSG, transcription ant 34.1 22 0.00074 29.0 2.4 18 112-129 22-39 (193)
81 3u9t_A MCC alpha, methylcroton 33.8 8.7 0.0003 36.3 0.0 24 109-132 612-635 (675)
82 3crk_C Dihydrolipoyllysine-res 33.7 29 0.001 23.5 2.8 22 113-134 62-84 (87)
83 2hh2_A KH-type splicing regula 31.9 1.1E+02 0.0036 21.8 5.7 52 96-149 27-78 (107)
84 3bg3_A Pyruvate carboxylase, m 30.0 22 0.00074 34.2 2.0 24 109-132 659-682 (718)
85 3cim_A Carbon dioxide-concentr 28.5 94 0.0032 22.3 4.9 54 90-149 12-65 (99)
86 3cdx_A Succinylglutamatedesucc 27.1 41 0.0014 28.9 3.1 22 111-132 278-299 (354)
87 3na6_A Succinylglutamate desuc 26.5 42 0.0014 28.6 3.1 21 113-133 270-290 (331)
88 3ssr_B Carbon dioxide concentr 26.5 1E+02 0.0035 22.8 4.8 56 89-150 11-66 (110)
89 1hpc_A H protein of the glycin 25.9 66 0.0022 24.2 3.8 41 89-132 21-61 (131)
90 1zw2_B Talin, metavinculin; co 24.9 57 0.0019 18.4 2.4 19 148-166 2-20 (26)
91 3a7l_A H-protein, glycine clea 24.8 72 0.0025 23.8 3.8 40 91-133 24-63 (128)
92 4axj_A EUTM, ethanolamine carb 24.7 1.5E+02 0.005 21.7 5.3 54 89-148 14-67 (104)
93 3n79_A PDUT; FES cluster, BMC 24.5 1.2E+02 0.0041 24.2 5.3 55 90-150 12-66 (192)
94 2qf7_A Pyruvate carboxylase pr 24.2 38 0.0013 34.1 2.7 23 109-131 1105-1127(1165)
95 1onl_A Glycine cleavage system 24.2 75 0.0026 23.7 3.8 41 89-132 21-61 (128)
96 3ngk_A Propanediol utilization 24.2 1.5E+02 0.0052 21.5 5.3 54 89-148 20-73 (102)
97 2a1b_A CCMK2, carbon dioxide c 24.1 1.2E+02 0.004 22.5 4.8 55 90-150 12-66 (116)
98 3fmc_A Putative succinylglutam 23.5 50 0.0017 28.7 3.1 22 111-132 301-322 (368)
99 2opv_A KHSRP protein; KH domai 23.3 1.7E+02 0.0059 19.5 6.7 51 95-148 33-83 (85)
100 2xhc_A Transcription antitermi 22.9 42 0.0014 29.4 2.4 18 112-129 62-79 (352)
101 2dne_A Dihydrolipoyllysine-res 22.7 56 0.0019 23.4 2.7 24 113-136 64-88 (108)
102 1y8o_B Dihydrolipoyllysine-res 22.4 75 0.0026 23.7 3.5 26 112-137 83-109 (128)
103 2a10_A CCMK4, carbon dioxide c 22.1 1.4E+02 0.0049 22.4 5.0 55 90-150 14-68 (125)
104 1j4w_A FUSE binding protein; s 22.0 2E+02 0.007 21.4 6.0 50 96-147 124-173 (174)
105 2jvz_A KH type-splicing, FAR u 21.6 2.4E+02 0.0082 20.6 6.4 51 96-149 22-72 (164)
106 2jvz_A KH type-splicing, FAR u 21.3 2.4E+02 0.0083 20.5 7.3 50 96-150 111-160 (164)
107 1ec6_A RNA-binding protein NOV 21.2 1.9E+02 0.0066 19.3 6.5 51 96-150 23-75 (87)
108 1x4n_A FAR upstream element bi 20.7 2.1E+02 0.0071 19.5 7.2 50 96-150 35-84 (92)
109 1j4w_A FUSE binding protein; s 20.5 2.7E+02 0.0092 20.7 7.1 51 96-151 23-73 (174)
110 3mpy_A Ethanolamine utilizatio 20.5 2.3E+02 0.0078 20.6 5.7 54 89-148 10-63 (103)
111 3it5_A Protease LASA; metallop 20.5 48 0.0016 26.2 2.1 17 114-130 86-102 (182)
112 3bn4_A Carbon dioxide-concentr 20.2 1.2E+02 0.0042 22.7 4.2 54 89-148 11-64 (122)
No 1
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=100.00 E-value=2.5e-47 Score=334.57 Aligned_cols=148 Identities=34% Similarity=0.476 Sum_probs=135.6
Q ss_pred cCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 029760 40 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD 119 (188)
Q Consensus 40 ~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~ 119 (188)
-+||.+....++++|+.||+||+|.+||+||.++++.+. +++.|++|++||+||++++.++|+.+|++++++|+++||+
T Consensus 16 ~~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~ 94 (300)
T 3l0g_A 16 TQGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGD 94 (300)
T ss_dssp --------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTC
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 357777888899999999999999449999998999888 9999999999999999999999999999999999999999
Q ss_pred eecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 120 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 120 ~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
.|++|++|++++|++++||.+||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 95 ~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~T~~~v~~~~~~~~~i~dTRKT~PGlR~lekyAV 165 (300)
T 3l0g_A 95 ITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVDEVSGTKVKIRSTRKTTPGLRMLDKYSV 165 (300)
T ss_dssp EECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred EeeCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCccChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 6999999999999999999996
No 2
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=5.1e-46 Score=324.29 Aligned_cols=142 Identities=42% Similarity=0.622 Sum_probs=136.7
Q ss_pred ChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCC
Q 029760 46 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 125 (188)
Q Consensus 46 ~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~ 125 (188)
++..++++|+.||+||+| +||+||.++++++..++++|++|++||+||++++.++|+.+|++++++|+++||+.|++|+
T Consensus 10 ~~~~~~~~i~~~l~ED~~-~gD~Tt~~~~~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~v~~~~~dG~~v~~g~ 88 (286)
T 1x1o_A 10 WQGGLEEALRAWLREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAEGARVAEGT 88 (286)
T ss_dssp CCSSHHHHHHHHHHHHHT-TCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTC
T ss_pred CcccHHHHHHHHHHhcCC-CCCccchhhcCCCCeEEEEEEECCCEEEECHHHHHHHHHHcCCCEEEEEEcCCCCCccCCC
Confidence 344699999999999999 7999999988889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 126 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 126 ~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+|++++|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 89 ~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pglr~~~kyAv 153 (286)
T 1x1o_A 89 EVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVEALAGTKAQILDTRKTTPGLRALEKYAV 153 (286)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999985 6899999999999999999996
No 3
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=100.00 E-value=1.6e-45 Score=321.64 Aligned_cols=141 Identities=33% Similarity=0.557 Sum_probs=135.4
Q ss_pred CChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCC
Q 029760 45 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 124 (188)
Q Consensus 45 ~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G 124 (188)
+|...++++|+.||+||+| +||+|+. + +++..++++|++|++||+||++++.++|+.+|++++++|+++||+.|++|
T Consensus 14 ~~~~~~~~~i~~~L~ED~~-~gD~T~~-~-~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g 90 (287)
T 3tqv_A 14 VPNDIVTRLVRESLAEDIA-TGDITAQ-L-AEDIDTTAFCITREEMILCGQDFANEVINQLDKNIQITWLYSDAQKVPAN 90 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCCGGGG-G-SCSCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTT
T ss_pred chHHHHHHHHHHHHHhhCC-CCccccc-C-CCCCeEEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEeeCC
Confidence 5667899999999999999 7999985 6 88999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 125 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 125 ~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
++|++++|++++||.+||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 91 ~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~~g~~~~i~dTRKT~PglR~l~kyAV 156 (287)
T 3tqv_A 91 ARIFELKGNVRSILTAERTILNFIQMLSGTATVTNKLVKLISQYKTKLLDTRKTIPGFRLAQKYAV 156 (287)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999985 7899999999999999999996
No 4
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=2.1e-44 Score=314.12 Aligned_cols=143 Identities=27% Similarity=0.421 Sum_probs=132.9
Q ss_pred CCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCC-eeEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 029760 41 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKED-GIIAGIALAEMIFHEVDPSLKVEWSLKDGD 119 (188)
Q Consensus 41 ~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~-gVvaG~~~a~~if~~l~~~l~v~~~~~DG~ 119 (188)
---.|.....+++|+.||+||+| +||+||.++ ++..++++|++|++ ||+||++++.++|+.+| ++++|+++||+
T Consensus 7 ~~~~~~~~~~~~~i~~~l~ED~~-~gD~Tt~~~--~~~~~~a~~~ar~~pgv~aG~~~~~~~f~~~~--~~v~~~~~dG~ 81 (285)
T 1o4u_A 7 HHHHHHMEKILDLLMSFVKEDEG-KLDLASFPL--RNTTAGAHLLLKTENVVASGIEVSRMFLEKMG--LLSKFNVEDGE 81 (285)
T ss_dssp ------CHHHHHHHHHHHHHHHC-SCCTTTGGG--TTCEEEEEEEECCSEEECCSHHHHHHHHHHTT--CEEEESCCTTC
T ss_pred chhhhhhhhhHHHHHHHHHhcCC-CCCccchhc--cCCeEEEEEEEcCCCeEEEcHHHHHHHHHHcC--CEEEEEcCCCC
Confidence 33457777899999999999999 799999977 78899999999999 99999999999999998 99999999999
Q ss_pred eecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEeecCCCCcCchhHhhccC
Q 029760 120 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 120 ~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~~~~I~~TRKT~PGlR~leKyAV 188 (188)
.|++|++|++++|++++||.+||++||||||+|||||+|++||+++++++|+|||||+||+|.+|||||
T Consensus 82 ~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~~~~i~~TRKt~Pglr~~~kyAv 150 (285)
T 1o4u_A 82 YLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 150 (285)
T ss_dssp EEESCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSEEECCSCCCTTTHHHHHHHH
T ss_pred CcCCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEeecCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999977999999999999999999996
No 5
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=100.00 E-value=6.1e-44 Score=313.05 Aligned_cols=138 Identities=38% Similarity=0.600 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEE
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 128 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il 128 (188)
.+++.|+.||+||+| +||+||.. ++++..++++|++|++||+||++++.++|+.+|++++++|+++||+.|++|++|+
T Consensus 28 ~~~~~i~~~L~ED~~-~gD~Tt~~-~~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~l~ 105 (298)
T 3gnn_A 28 AIARNVADALAEDVG-SGDQTGRL-VPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTVC 105 (298)
T ss_dssp HHHHHHHHHHHHHHH-HC-----C-CCCCSEEEEEEEECSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEEE
T ss_pred HHHHHHHHHHHhcCC-CCCchhhh-cCCCceEEEEEEECCCEEEEcHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEEE
Confidence 588999999999999 79999975 5788999999999999999999999999999998899999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 129 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 129 ~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+++|++++||.+||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 106 ~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~a~~g~~~~i~~TRKt~Pglr~l~kyAv 167 (298)
T 3gnn_A 106 ELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLRLAQKYAV 167 (298)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCEECCSCCCTTCHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCcchHHHHHhhH
Confidence 99999999999999999999999999999999999985 6999999999999999999996
No 6
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=4.8e-43 Score=309.90 Aligned_cols=139 Identities=32% Similarity=0.522 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHhhcCC----CCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCC
Q 029760 49 DLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 124 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~----~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G 124 (188)
.+++.|+.||+||+|. +||+||. +++++..+++.|++|++||+||++++.++|+.+|++++++|+++||+.|++|
T Consensus 45 ~~~~~i~~~L~ED~~~~~~~~gD~Tt~-~~~~~~~~~a~i~are~gVlaG~~~a~~vf~~ld~~~~v~~~~~dG~~v~~g 123 (320)
T 3paj_A 45 DITRSVIDTLKEDLGGTLDPAADITAS-LIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTPN 123 (320)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGCTTGG-GSCTTCEEEEEEEESSCEECCCHHHHHHHHHHTTSCCEEEESSCTTCEECTT
T ss_pred HHHHHHHHHHHhhCCCCCCCCCccccc-ccCCCCeEEEEEEECCCceEecHHHHHHHHHHcCCCeEEEEEeCCCCEecCC
Confidence 5889999999999981 4899998 7888999999999999999999999999999998889999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 125 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 125 ~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
++|++++|++++||.+||++||||||+|||||+|++||++++ +++++|||||+||+|.+|||||
T Consensus 124 ~~l~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~aa~g~~~~i~~TRKT~PglR~l~kyAV 189 (320)
T 3paj_A 124 QTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQELKGTQCRLLDTRKTIPGLRSALKYAV 189 (320)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecCCCccchHHHhhhH
Confidence 999999999999999999999999999999999999999995 7999999999999999999996
No 7
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=100.00 E-value=7.3e-43 Score=304.13 Aligned_cols=139 Identities=32% Similarity=0.466 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHhhcCCCC--CcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHH-c-CCCcEEEEEcCCCCeecC
Q 029760 48 YDLKGVVKLALAEDAGDRG--DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE-V-DPSLKVEWSLKDGDHVHK 123 (188)
Q Consensus 48 ~~~~~~i~~~L~ED~~~~g--DlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~-l-~~~l~v~~~~~DG~~v~~ 123 (188)
..++++|+.||+||+| +| |+||+++ +.+..++++|++|++||+||++++.++|+. + |++++++|+++||+.|++
T Consensus 8 ~~~~~~i~~~l~ED~~-~g~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~~v~~~~~dG~~v~~ 85 (284)
T 1qpo_A 8 AAARAAIARGLDEDLR-YGPDVTTLATV-PASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPP 85 (284)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCHHHHHHS-CTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECT
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHHhCCCCCEEEEEEcCCCCEecC
Confidence 3578999999999999 78 9999988 889999999999999999999999999999 8 888999999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 124 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 124 G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
|++|++++|++++||++||++||||||+|||||+|++||+++. +++|++||||+||+|.++||||
T Consensus 86 g~~v~~i~G~~~~ll~~Er~~Ln~l~~~SGIAT~t~~~v~~~~g~~~~i~~tRKt~Pglr~l~k~Av 152 (284)
T 1qpo_A 86 GEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 152 (284)
T ss_dssp TCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CcEEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCCchHHHhhhh
Confidence 9999999999999999999999999999999999999999984 6899999999999999999996
No 8
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=100.00 E-value=1.5e-40 Score=287.05 Aligned_cols=136 Identities=29% Similarity=0.470 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEE
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 128 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il 128 (188)
+++++|+.||+||+| +||+||. +++++..+++++++|++||+||++++.++|+.++ ++++|.++||+.|.+|++|+
T Consensus 2 ~~~~~i~~~l~eD~~-~gd~tt~-~~~~~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 77 (273)
T 2b7n_A 2 EIRTFLERALKEDLG-HGDLFER-VLEKDFKATAFVRAKQEGVFSGEKYALELLEMTG--IECVQTIKDKERFKPKDALM 77 (273)
T ss_dssp TTHHHHHHHHHHHHT-TCCSHHH-HCSCCCEEEEEEEESSCEECCCHHHHHHHHHHTT--CEEEEECCTTCEECTTCEEE
T ss_pred cHHHHHHHHHHhcCC-CCCceee-ccCCCCeEEEEEEEcCCEEEEcHHHHHHHHHHCC--cEEEEEcCCCCCcCCCCEEE
Confidence 468899999999999 7999998 5677899999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 129 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 129 ~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
+++|+++++|.+||++||||||+|||||+|++||++++ +++++|||||+||+|.+|||||
T Consensus 78 ~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~tRkt~p~~r~~~~~A~ 139 (273)
T 2b7n_A 78 EIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEALNSHKVRLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSEEECCSCCCTTCHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999995 6899999999999999999985
No 9
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=100.00 E-value=8.5e-40 Score=286.09 Aligned_cols=135 Identities=30% Similarity=0.484 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEE
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 128 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il 128 (188)
.++++|+.||+||+| +||+||. +++ +..++++|++|++||+||++++.++|+.+| ++++|.++||+.|.+|++|+
T Consensus 16 ~~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~l~ 90 (299)
T 2jbm_A 16 TLAALVDSWLREDCP-GLNYAAL-VSG-AGPSQAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVA 90 (299)
T ss_dssp HHHHHHHHHHHHHCS-SCCTTHH-HHC-SCEEEEEEEECSCEECCCHHHHHHHHHHTT--CEEEESSCTTCEECSSEEEE
T ss_pred hHHHHHHHHHHhhCC-CCCceee-ccC-CCeEEEEEEEcCCEEEEcHHHHHHHHHHcC--CEEEEEcCCCCCCCCCCEEE
Confidence 488999999999999 7999998 555 889999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--C--CeEeecCCCCcCchhHhhccC
Q 029760 129 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--P--ATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 129 ~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~--~~I~~TRKT~PGlR~leKyAV 188 (188)
+++|+++++|.+||++||||||+|||||+|++||++++ + ++++|||||+||+|.+|||||
T Consensus 91 ~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~~~tRkt~p~~r~~e~~A~ 154 (299)
T 2jbm_A 91 EVRGPAHCLLLGERVALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFRLVEKYGL 154 (299)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeecCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999983 5 999999999999999999985
No 10
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=1.2e-39 Score=285.09 Aligned_cols=139 Identities=34% Similarity=0.573 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHhhcCCCC-----CcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHc-CCCcEEEEEcCCCCee
Q 029760 48 YDLKGVVKLALAEDAGDRG-----DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDHV 121 (188)
Q Consensus 48 ~~~~~~i~~~L~ED~~~~g-----DlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l-~~~l~v~~~~~DG~~v 121 (188)
.+++++|+.||+||+| .| |+||+++ +.+..++++|++|++||+||++++.++|+.+ |++++|+|+++||+.|
T Consensus 20 ~~~~~~i~~~l~ED~~-g~~~~~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~v~~~~~dG~~v 97 (296)
T 1qap_A 20 LDIPAAVAQALREDLG-GEVDAGNDITAQLL-PADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAI 97 (296)
T ss_dssp HHHHHHHHHHHHHHTT-TSCCGGGCTGGGGS-CTTCEECCEEEESSCEECCCHHHHHHHHHHHHTTSSEEEESCCTTCEE
T ss_pred cCHHHHHHHHHHHhCC-CCCCCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHhcCCCCeEEEEEcCCCCEe
Confidence 3588999999999998 33 9999988 8899999999999999999999999999999 8889999999999999
Q ss_pred cCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 122 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 122 ~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
.+|++|++++|+++++|.+||++||||||+|||||+|++||+++. ++++++||||+||+|.+|||||
T Consensus 98 ~~g~~~~~v~G~~~~~l~~Er~aLn~l~~~SgIAT~t~~~v~~~~gt~v~i~~tRkt~P~~r~~e~~Av 166 (296)
T 1qap_A 98 HANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 166 (296)
T ss_dssp CTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred cCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 6899999999999999999985
No 11
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=100.00 E-value=2.8e-39 Score=282.24 Aligned_cols=135 Identities=35% Similarity=0.564 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCC----
Q 029760 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG---- 124 (188)
Q Consensus 49 ~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G---- 124 (188)
.++++|+.||+||+| +||+||. +++ +..++++|++|++||+||++++.++|+.++ ++++|.++||+.|.+|
T Consensus 12 ~~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 86 (294)
T 3c2e_A 12 AWRQDVTNWLSEDVP-SFDFGGY-VVG-SDLKEANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDS 86 (294)
T ss_dssp HHHHHHHHHHHHHCS-SCCHHHH-HHC-SCEEEEEEEECSSEECCCHHHHHHHHHHTT--CEEEESSCTTCEECGGGSSS
T ss_pred hHHHHHHHHHHhcCC-CCCcccc-ccC-CCeEEEEEEECCCEEEEcHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCCCC
Confidence 489999999999999 7999998 555 889999999999999999999999999998 9999999999999999
Q ss_pred --CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--C--CeEeecCCCCcCchhHhhccC
Q 029760 125 --LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--P--ATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 125 --~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~--~~I~~TRKT~PGlR~leKyAV 188 (188)
++|++++|+++++|.+||++||||||+|||||+|++||++++ + ++++|||||+||+|.+|||||
T Consensus 87 ~~~~l~~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~aa~~~~~~~~~~~tRkt~p~~r~~e~~A~ 156 (294)
T 3c2e_A 87 GKIVVAKITGPAKNILLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSM 156 (294)
T ss_dssp SCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999983 5 999999999999999999985
No 12
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=99.94 E-value=4.8e-28 Score=218.79 Aligned_cols=132 Identities=18% Similarity=0.175 Sum_probs=122.1
Q ss_pred HHHHHHHHHhhcCCCCCcccccc---cCCCcEEEEEEEeeC------CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCee
Q 029760 51 KGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV 121 (188)
Q Consensus 51 ~~~i~~~L~ED~~~~gDlTt~~l---~~~~~~~~a~i~aKe------~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v 121 (188)
++.|+.+|.||++ .|.|++++ ++ +.++++.|++|+ ++|+||++++.++|+.++ +++. .++||+.|
T Consensus 15 ~~~I~~~L~tD~Y--~~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~~--~~i~-~~~eG~~v 88 (395)
T 2i14_A 15 EDEIKAGKTTDVY--FLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIP--VNVY-AMPEGTIF 88 (395)
T ss_dssp HHHHHHTTTSBHH--HHHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTSS--EEEE-ECCTTCEE
T ss_pred HHHHHHHHHhhch--HHHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCCC--cEEE-EEcCCCEe
Confidence 4679999999996 48888776 36 888999999999 999999999999999654 8885 99999999
Q ss_pred cCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 122 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 122 ~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
.+|+++++|+|++.+++.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++|||+
T Consensus 89 ~~ge~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 157 (395)
T 2i14_A 89 HPYEPVLQIEGDYADFGIYETALLGMLSQASGIATAALRIKIAAKFKPVYSFGIRHMHPAIAPMIDRAA 157 (395)
T ss_dssp CTTSCSEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEECGGGGSCGGGHHHHHHHH
T ss_pred cCCCEEEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 5899999999999999999985
No 13
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=99.94 E-value=7.9e-28 Score=217.62 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhcCCCCCccccccc---CCCcEEEEEEEeeC----CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecC
Q 029760 51 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE----DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 123 (188)
Q Consensus 51 ~~~i~~~L~ED~~~~gDlTt~~l~---~~~~~~~a~i~aKe----~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~ 123 (188)
++.|+.+|.||++ .|.|++++. + +.++++.|++|+ .||+||++++.++|+.++ +++. .++||+.|.+
T Consensus 15 ~~~I~~~L~tD~Y--~~tm~~~~~~~~~-~~~~~~~~~~R~~p~~~~v~aGl~~~~~~l~~~~--~~i~-~~~eG~~v~~ 88 (398)
T 2i1o_A 15 DEDIKKGLASDVY--FERTISAIGDKCN-DLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLD--VDLY-AIPEGTILFP 88 (398)
T ss_dssp HHHHHHTCSSCTH--HHHHHHHHGGGGG-GCEEEEEEEECSCCSSCEECCCHHHHHHHHTTSS--CEEE-ECCTTCEECS
T ss_pred HHHHHHHHHhhhh--HHHHHHHHHHhCC-CCeEEEEEEECCCCCcceEEcCHHHHHHHHhhCC--eEEE-EeCCCCEECC
Confidence 4679999999996 488887766 5 888999999999 999999999999999665 8886 9999999999
Q ss_pred CC------EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760 124 GL------QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188 (188)
Q Consensus 124 G~------~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV 188 (188)
|+ ++++|+|++.+++.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++|||+
T Consensus 89 g~~~g~~~~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 161 (398)
T 2i1o_A 89 RDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRSA 161 (398)
T ss_dssp BCTTSCBCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSCGGGHHHHHHHH
T ss_pred CCcccccceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999995 5799999999999999999985
No 14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=99.76 E-value=1.7e-18 Score=160.43 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=100.6
Q ss_pred cCCCcEEEEEEEeeCC------eeEEcHHHHHHHHHHcCCC---------------------------cEEEEEcCCCCe
Q 029760 74 IPLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS---------------------------LKVEWSLKDGDH 120 (188)
Q Consensus 74 ~~~~~~~~a~i~aKe~------gVvaG~~~a~~if~~l~~~---------------------------l~v~~~~~DG~~ 120 (188)
++.+.++...+++|.. +|+||++.+.+.++.+.-. .++ +.++||+.
T Consensus 29 g~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~yl~~~~~f~~~fl~~L~~~~f~~~i-~av~EG~~ 107 (494)
T 2f7f_A 29 GRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTV-RSALEGDL 107 (494)
T ss_dssp TCTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTSCCCHHHHHHHHTCCCCCEE-EECCTTCE
T ss_pred CCCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCceE-EEecCCCc
Confidence 4567889999999985 8999999999999876511 232 68999999
Q ss_pred ecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCc--hhHhhccC
Q 029760 121 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTL--RLLDKWAV 188 (188)
Q Consensus 121 v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGl--R~leKyAV 188 (188)
|.+|+++++|+|++.+++.+||++||+|+|+|||||+|++|++++. ++..++||||+||. +..+|||+
T Consensus 108 v~~g~pll~v~Gp~~~~~~~Et~lLnil~~~S~IAT~a~r~v~aa~~~~v~~fgtRr~~~~~~a~~~~raa~ 179 (494)
T 2f7f_A 108 VFNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAY 179 (494)
T ss_dssp ECTTSCSEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCcHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999996 46788899999986 88888874
No 15
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=98.02 E-value=5.3e-06 Score=75.29 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=78.7
Q ss_pred CcEEEEEEEeeCC----eeEEcHHHHHHHHHHcCC-CcEEEEEc-----------------CCCCee----cCCCEEEEE
Q 029760 77 DMEVEAHFLAKED----GIIAGIALAEMIFHEVDP-SLKVEWSL-----------------KDGDHV----HKGLQFGKV 130 (188)
Q Consensus 77 ~~~~~a~i~aKe~----gVvaG~~~a~~if~~l~~-~l~v~~~~-----------------~DG~~v----~~G~~il~v 130 (188)
+.+++.+++.|.. +++||++++...++.+.- +-+++|+. =+|+.+ .+|+++++|
T Consensus 32 ~~~v~fe~f~R~~~~~~~~~agl~~~l~~l~~l~ft~~ei~yL~~~~~~~~~fl~yL~~frf~~~~~~~~e~~~ep~l~I 111 (407)
T 3os4_A 32 HITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTSDEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRI 111 (407)
T ss_dssp TCEEEEEEEECSSCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHTSSSCCHHHHHHHHHCCCCGGGEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceEEEEecCCCcEEEEE
Confidence 5578899999976 788999999888886530 00111111 145544 799999999
Q ss_pred EechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCeE--eecCCCCcC
Q 029760 131 SGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATI--LETRKTAPT 179 (188)
Q Consensus 131 ~G~a~~ll~aERv~LN~L~~~---------------SGIAT~T~~~V~aa-----~~~~I--~~TRKT~PG 179 (188)
+|+..+.-..|..+||++.++ |.|||++++++++| .+..+ ++||..++-
T Consensus 112 ~Gp~~e~~l~Et~lL~iin~~~~~~~~~~~~~~~~~s~iatKa~r~~~aa~~~~~~~~~~~eFGtRR~~s~ 182 (407)
T 3os4_A 112 AGLWCEVIMWEVPLLAVISEIVHRRRSTQVTTDQAVQQLRTKLEQFNALSADIDITHFKLMDFGTRRRFSR 182 (407)
T ss_dssp EEEHHHHTTSHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHTTTSCCTTCCEEECCSTTCSCH
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhccccCCCeEEecccccccCH
Confidence 999999999999999999985 99999999999976 44444 568887653
No 16
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=97.62 E-value=9.7e-05 Score=67.81 Aligned_cols=102 Identities=12% Similarity=0.177 Sum_probs=77.3
Q ss_pred CcEEEEEEEeeCC----eeEEcHHHHHHHHHHc-------------CC---------------CcEEEEEcCCCCeecCC
Q 029760 77 DMEVEAHFLAKED----GIIAGIALAEMIFHEV-------------DP---------------SLKVEWSLKDGDHVHKG 124 (188)
Q Consensus 77 ~~~~~a~i~aKe~----gVvaG~~~a~~if~~l-------------~~---------------~l~v~~~~~DG~~v~~G 124 (188)
+.+++..++.|.. +.+||++.+...++.+ ++ ..+-.+.+++|+.+.+|
T Consensus 36 ~~~v~fe~f~R~~p~~~~~~agL~~~l~~L~~l~ft~eei~yL~~~~~~~~~~fl~yL~~frf~~~~~~av~eg~~~~~~ 115 (446)
T 4hl7_A 36 DVSVRYELIVRSEEDASGLLDAIRQEIAHLGTLRFSDADIHYLTQHAPHLKATFLQSLRYFHFVPQEQVEMGIVKQGGKQ 115 (446)
T ss_dssp TCEEEEEEEEESCTTTHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHTTCCCCHHHHEEEEEECC----
T ss_pred CCeEEEEEEECCCCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCCHHHHHHHHhCCCCCeEEEEEeccccCcCC
Confidence 5678889999975 6779999887777742 10 01102457788888999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHH------hHHH---------HHHHHHHHHhC-----CCeE--eecCCCCc
Q 029760 125 LQFGKVSGRAHSIVIAERVVLNFMQRM------SGIA---------TLTRAMADLAH-----PATI--LETRKTAP 178 (188)
Q Consensus 125 ~~il~v~G~a~~ll~aERv~LN~L~~~------SGIA---------T~T~~~V~aa~-----~~~I--~~TRKT~P 178 (188)
+++++|+|+..+.-..|..+||++.+. |.|| |++++++++|. +..+ ++||..++
T Consensus 116 ep~l~VeGp~~e~~L~Et~lL~iin~~~~~~~~s~ia~~~~~~~~~tKa~rl~~aA~~~~~~~~~l~eFGtRR~~s 191 (446)
T 4hl7_A 116 QLRISIRGSWRDTILYETLVMAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKAEIERRGINNFSLTEMGTRRRFS 191 (446)
T ss_dssp EEEEEEEEEHHHHTTHHHHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSTTCSC
T ss_pred EEEEEEEEEHHHHhHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhhcccccCCCeEEecccccccC
Confidence 999999999999999999999999998 8997 89999999874 4444 66898875
No 17
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=97.62 E-value=0.00021 Score=64.70 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=73.0
Q ss_pred CcEEEEEEEeeC--C--eeEEcHHHHHHHHHHc-----------------------------CC-CcEEEEEcCCCCeec
Q 029760 77 DMEVEAHFLAKE--D--GIIAGIALAEMIFHEV-----------------------------DP-SLKVEWSLKDGDHVH 122 (188)
Q Consensus 77 ~~~~~a~i~aKe--~--gVvaG~~~a~~if~~l-----------------------------~~-~l~v~~~~~DG~~v~ 122 (188)
+.++...++.|. + ++++|++.+...++.+ ++ .++|. . +||+
T Consensus 36 ~~~~~f~~~~R~~~~~~~~~~GL~~~l~~l~~~~ft~~ei~yL~~~~~f~~~fl~~L~~~rf~~~~v~I~-a-~EG~--- 110 (408)
T 1yir_A 36 NAEVEWEFRCRNQEDLRLYLPAIREQLEYLAGLAISDEQLAFLERIPFLAPDFIRFLGLFRFNPRYVQTG-I-ENDE--- 110 (408)
T ss_dssp TCEEEEEEEETTCCCCGGGHHHHHHHHHHHHHCCCCHHHHHHHHTSTTSCHHHHHHHHHCCCCGGGEEEE-E-ETTE---
T ss_pred CCEEEEEEEecCCCCcccHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhcCCCCceEEEE-c-CCCc---
Confidence 567888889987 4 7899999988887632 11 13442 2 6665
Q ss_pred CCCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-----CCeE--eecCCCCc
Q 029760 123 KGLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-----PATI--LETRKTAP 178 (188)
Q Consensus 123 ~G~~il~v~G~a~~ll~aERv~LN~L~~~---------------SGIAT~T~~~V~aa~-----~~~I--~~TRKT~P 178 (188)
++++|+|+..+.-..|..+||++.+. +.|||+++++++++. +..+ ++||...+
T Consensus 111 ---~~l~i~Gp~~~~~llEt~lL~ii~~~~~~~~~~~~~~~~~~~~iatK~~rl~~aa~~~~~~~~~l~dFG~RR~~~ 185 (408)
T 1yir_A 111 ---FFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFS 185 (408)
T ss_dssp ---EEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHCTTCBHHHHHHHHHHHHHHHHTTSCHHHHTTCEEEECCSTTCSC
T ss_pred ---EEEEEEecHHHHHHHHHHHHHHHHhhHhhccCCccchHHHHHHHHHHHHHHHHhhcccccCCCeEEEecCccccc
Confidence 79999999999999999999999996 899999999887764 5555 55887765
No 18
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=97.25 E-value=0.0006 Score=63.13 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEechhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADL 164 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~a~~l----l~aERv~LN~L~~~SGIAT~T~~~V~a 164 (188)
++|. .++||+.|.+++++++|+|+.... -..|..+|| |.|.|.|||.+++++++
T Consensus 114 ~~I~-A~pEGt~v~~~~Pll~Ve~~~~~f~w~~~llET~Ll~-l~~~s~vAT~A~r~~~~ 171 (484)
T 3dhf_A 114 IEIK-AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQ-SWYPITVATNSREQKKI 171 (484)
T ss_dssp EEEE-ECCTTCEEETTSCCEEEEESSGGGTTHHHHTHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred eEEE-EECCCccccCCCcEEEEEEcCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5663 789999999999999999998844 688999999 99999999999999986
No 19
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=97.12 E-value=0.0017 Score=58.45 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=69.7
Q ss_pred CcEEEEEEEeeCC----e-eEEcHHHHHHHHHH------------------------------cCC-CcEEEEEcCCCCe
Q 029760 77 DMEVEAHFLAKED----G-IIAGIALAEMIFHE------------------------------VDP-SLKVEWSLKDGDH 120 (188)
Q Consensus 77 ~~~~~a~i~aKe~----g-VvaG~~~a~~if~~------------------------------l~~-~l~v~~~~~DG~~ 120 (188)
+.++...++.|.+ + +++|++.+...++. +++ .++| +.++||
T Consensus 27 ~~~v~f~~~~R~~~~~~~~v~~gL~~~l~~l~~~~ft~~ei~yL~~~~~~f~~~fl~~L~~~r~~~~~v~I-~a~~EG-- 103 (394)
T 2im5_A 27 RAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELPYLPPIYIDFLDGFRFDPEEVTV-SIDAQG-- 103 (394)
T ss_dssp TCEEEEEEEETTCCCCCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHHCCCCGGGEEE-EECTTS--
T ss_pred CCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCHHHHHHHHhcCCCCceEEE-EEcCCC--
Confidence 6678889999873 4 89999987776542 111 1233 244565
Q ss_pred ecCCCEEEEEEechhhhHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCCC--eEeecCCCCc
Q 029760 121 VHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHPA--TILETRKTAP 178 (188)
Q Consensus 121 v~~G~~il~v~G~a~~ll~aERv~LN~L~---~~------------SGIAT~T~~~V~aa~~~--~I~~TRKT~P 178 (188)
+++++|+|+..+.-..|..+||++. |. +.|||+++++ ++.+. -=++||..++
T Consensus 104 ----ep~l~I~Gp~~~~~l~Et~lL~ii~e~~~~~Vat~~~~~~~~~~iatka~r~--a~~~~~l~dFG~RR~~~ 172 (394)
T 2im5_A 104 ----HLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELM--REHRATFSIFGMRRRFS 172 (394)
T ss_dssp ----CEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--HHTTCCEEECCSTTCSC
T ss_pred ----cEEEEEEecHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHH--hCCCCEEEEcCCccccc
Confidence 6999999999999999999999999 56 9999999997 44444 4466888776
No 20
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=96.81 E-value=0.0013 Score=60.02 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=72.8
Q ss_pred cEEEEEEEeeCC------eeEEcHHHHHHHHHH-------------------------c-------CC--CcEEEEEcCC
Q 029760 78 MEVEAHFLAKED------GIIAGIALAEMIFHE-------------------------V-------DP--SLKVEWSLKD 117 (188)
Q Consensus 78 ~~~~a~i~aKe~------gVvaG~~~a~~if~~-------------------------l-------~~--~l~v~~~~~D 117 (188)
.++...++.|.+ +|++|++.+...++. + ++ .++| +.++|
T Consensus 42 ~~~~f~~~~R~p~~~~~~~v~~GL~~~l~~l~~l~ft~eei~yL~~~~~~f~~~fl~~L~~~~f~~~~~~~v~I-~a~~E 120 (441)
T 1vlp_A 42 VTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNYKLHPEEQISF-TSEEI 120 (441)
T ss_dssp CEEEEEEEESCTTCCBCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTCCCCHHHHEEE-EEEEE
T ss_pred CEEEEEEEEeCCCccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhcCCCCHHHHHHHHhcccCcCCCceEEE-EEecC
Confidence 346777888762 468999977765431 1 11 1344 35688
Q ss_pred -CCeecCCCEEEEEEechhhhHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCC--CeEeecCCCCc
Q 029760 118 -GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHP--ATILETRKTAP 178 (188)
Q Consensus 118 -G~~v~~G~~il~v~G~a~~ll~aERv~LN~L~---~~------------SGIAT~T~~~V~aa~~--~~I~~TRKT~P 178 (188)
|+.+. |+++++|+|+....-..|..+||++. +. +.|||++++++ +.+ +-=++||....
T Consensus 121 gGt~v~-~ep~l~IeGp~~~~~llET~lL~ii~e~~~~~v~t~~~~~~~~~~iatka~r~~--a~~~~l~dFG~RR~~~ 196 (441)
T 1vlp_A 121 EGKPTH-YKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETLF--DNGIRFSEFGTRRRRS 196 (441)
T ss_dssp TTEEEE-EEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHTCCCCCCTTHHHHHHHHHHHHH--HTTCCEEECCSTTCSC
T ss_pred CCceEC-CEEEEEEEEcHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhc--cCCCeEEecCCCCcCC
Confidence 99999 99999999999989999999999999 55 99999999987 344 34466887775
No 21
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=96.61 E-value=0.0081 Score=54.98 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=47.0
Q ss_pred cCCCEEEEEEechhhhHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHhCCCeE--eecCCCC
Q 029760 122 HKGLQFGKVSGRAHSIVIAERVVLNFMQRM----------------------SGIATLTRAMADLAHPATI--LETRKTA 177 (188)
Q Consensus 122 ~~G~~il~v~G~a~~ll~aERv~LN~L~~~----------------------SGIAT~T~~~V~aa~~~~I--~~TRKT~ 177 (188)
..|+++++|+|+..+.-..|..+||++.+. |.|||+++++ .++.+.++ ++||...
T Consensus 129 ~EGep~l~I~Gp~~~~~llET~lL~ii~~~~~t~a~~t~~~~~~s~~~~~~~~~iatka~r~-~~a~~~~l~dFG~RR~~ 207 (449)
T 1ybe_A 129 RDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERL-RELPGLRISDFGTRRRH 207 (449)
T ss_dssp CSSCEEEEECSBHHHHGGGHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH-TTCTTCCEEECCTTTCS
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHHHhhhhhcccccccccccchhhHHHHHHHHHHHHHHH-hccCCCeEEecCCcccC
Confidence 455899999999999999999999999999 9999999998 44544444 5688777
Q ss_pred c
Q 029760 178 P 178 (188)
Q Consensus 178 P 178 (188)
.
T Consensus 208 s 208 (449)
T 1ybe_A 208 S 208 (449)
T ss_dssp C
T ss_pred c
Confidence 6
No 22
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=87.68 E-value=0.43 Score=33.15 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|++++|+.|++|+.|++++..
T Consensus 21 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 45 (87)
T 3crk_C 21 TVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEEcCCCCEEcCCCEEEEEECC
Confidence 3478999999999999999999864
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=87.19 E-value=0.45 Score=32.16 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=20.7
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+|++++|+.|++|+++++++..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEecCCCCEEcCCCEEEEEEcc
Confidence 56899999999999999999864
No 24
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=87.18 E-value=0.51 Score=30.97 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+|++++|+.|++|+.|++++..
T Consensus 11 ~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEcCCcCEECCCCEEEEEECC
Confidence 46889999999999999999864
No 25
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.22 E-value=0.53 Score=33.80 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|++++|+.|++||+|++++..
T Consensus 23 ~i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 23 NIVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp CEEEESSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEcc
Confidence 3578999999999999999999864
No 26
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=85.66 E-value=0.68 Score=30.35 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.8
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+|++++|+.|++|+.|++++..
T Consensus 18 ~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 18 RVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp EECCCTTCEECTTCEEEEEEET
T ss_pred EEEcCCCCEeCCCCEEEEEecc
Confidence 5788999999999999999864
No 27
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=85.32 E-value=0.57 Score=31.57 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-.+|++++|+.|++|+++++++..
T Consensus 16 ~v~~~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 16 EVTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp EEEECCCCTTCEECBTSEEEEEESS
T ss_pred EEEEEEcCCCCEECCCCEEEEEEcC
Confidence 3457899999999999999999865
No 28
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=84.00 E-value=0.64 Score=34.07 Aligned_cols=25 Identities=24% Similarity=0.516 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|+++.|+.|++||+|++++-.
T Consensus 23 ~v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 23 TIARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp EEEECSSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEecCCCEEEEEEcC
Confidence 3467899999999999999999864
No 29
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=83.71 E-value=0.56 Score=33.23 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|++++|+.|++|++|++++..
T Consensus 20 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 44 (93)
T 1k8m_A 20 TVKEWYVKEGDTVSQFDSICEVQSD 44 (93)
T ss_dssp EEEEECCCTTCEECSSSCCEEEECS
T ss_pred EEEEEEcCCcCEECCCCEEEEEEcC
Confidence 4578999999999999999999854
No 30
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.28 E-value=14 Score=33.43 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=45.4
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHHHcC-----------CCcEEEEEcCCCCeecCCCEEEEEEechh
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAH 135 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~--a~~if~~l~-----------~~l~v~~~~~DG~~v~~G~~il~v~G~a~ 135 (188)
..+ +..+.|.++|+|..++- +..+...+| +..-+.++++=||.|++||++++++.+-.
T Consensus 324 ~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 324 LAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 455 88999999999988542 222333333 46778999999999999999999999866
No 31
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=83.25 E-value=0.53 Score=31.79 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.7
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-.+|++++|+.|++|++|++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 18 VATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp ECCCSSCTTSEECSSCEEEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEcc
Confidence 356889999999999999999853
No 32
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=82.72 E-value=1.1 Score=29.79 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+|++++|+.|++|+.|++++..
T Consensus 21 ~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp EECCCTTCEECTTSEEEEEEET
T ss_pred EEEcCCcCEEcCCCEEEEEEcc
Confidence 5788999999999999999864
No 33
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.53 E-value=0.85 Score=32.47 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=19.3
Q ss_pred EEEcCCCCeecCCCEEEEEEe
Q 029760 112 EWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G 132 (188)
+|++++|+.|++||+|++++-
T Consensus 30 ~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 30 QYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp EESSCTTEEECTTCEEEEEEE
T ss_pred EEEcCCcCEECCCCEEEEEEe
Confidence 578999999999999999984
No 34
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=82.39 E-value=0.67 Score=31.37 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.5
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-.+|++++|+.|++||.+++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 18 IIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEeC
Confidence 467899999999999999999876
No 35
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=82.17 E-value=0.92 Score=31.31 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCeecCCCEEEEEEe
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G 132 (188)
-++|++++|+.|++|+.|++++.
T Consensus 16 v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 16 LTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp EEEESSCTTEEECTTCEEEEEEC
T ss_pred EEEEECCCCCEECCCCEEEEEEe
Confidence 35789999999999999999983
No 36
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=81.80 E-value=0.64 Score=31.38 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.8
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+|++++|+.|++|+.+++++..
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEET
T ss_pred ccccCCcCEECCCCEEEEEEec
Confidence 5689999999999999999864
No 37
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=81.10 E-value=13 Score=33.60 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=46.9
Q ss_pred CCcEEEEEEEeeCCeeEEcHHH--HHHHHHHcC-----------CCcEEEEEcCCCCeecCCCEEEEEEechhh
Q 029760 76 LDMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 136 (188)
Q Consensus 76 ~~~~~~a~i~aKe~gVvaG~~~--a~~if~~l~-----------~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ 136 (188)
+..+.+..+.|.++|+|..++- +..+...+| +..-+.++++=||.|++||++++++.+-..
T Consensus 330 ~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~ 403 (433)
T 1brw_A 330 PKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRPD 403 (433)
T ss_dssp CCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSSC
T ss_pred CCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCcc
Confidence 3456788999999999988542 222333333 467789999999999999999999998653
No 38
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=81.01 E-value=1.2 Score=33.96 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEec
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.-++|+++.||.|++||+|++++..
T Consensus 43 ~V~~~~V~~Gd~V~~Gd~L~~iEa~ 67 (128)
T 1y8o_B 43 TVQRWEKKVGEKLSEGDLLAEIETD 67 (128)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEecCCCCEecCCCEEEEEEcC
Confidence 4578999999999999999999753
No 39
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=80.81 E-value=0.53 Score=31.56 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-.+|++++|+.|++|+.+++++..
T Consensus 18 v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 18 IVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp EEECSCCTTCEECSCCCCCEEESS
T ss_pred EEEEEeCCCCEECCCCEEEEEEcc
Confidence 357899999999999999999864
No 40
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=79.93 E-value=1.3 Score=31.56 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.6
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+|++++|+.|++|++|++++-.
T Consensus 27 ~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp EECCCTTEEECSSCEEEEEESS
T ss_pred EEECCCCCEECCCCEEEEEEcc
Confidence 4789999999999999999854
No 41
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=78.93 E-value=1.6 Score=31.33 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++++++|+.|++|++|+++.-+
T Consensus 14 ~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 14 NKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EECSCTTSEECTTCEEEEEECT
T ss_pred EEECCCcCEECCCCEEEEECHH
Confidence 5689999999999999999987
No 42
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=77.48 E-value=6.9 Score=35.55 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=48.0
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHHHcC-----------CCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHH
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 141 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~--a~~if~~l~-----------~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aE 141 (188)
....+..+.|.++|+|..++- +..+...+| +..-+.++++=||.|++||++++++-+...+-.+.
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~~~~~~a~ 411 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVV 411 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEESSSCCHHHH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEeCChHhHHHHH
Confidence 455788999999999998653 333444443 46789999999999999999999993333333333
No 43
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=77.18 E-value=1.1 Score=31.57 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.5
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+|++++|+.|++||+|++++..
T Consensus 38 ~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 38 AVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp EECCCTTCCCCTTCCCEEEEC-
T ss_pred EEECCCCCEEcCCCEEEEEecc
Confidence 6789999999999999999864
No 44
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=75.39 E-value=14 Score=33.83 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=45.4
Q ss_pred CcEEEEEEEeeCCeeEEcHHH-----HHHHH------HHcCCCcEEEEEcCCCCeecCCCEEEEEEechhh
Q 029760 77 DMEVEAHFLAKEDGIIAGIAL-----AEMIF------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 136 (188)
Q Consensus 77 ~~~~~a~i~aKe~gVvaG~~~-----a~~if------~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ 136 (188)
..+.+..+.|.++|+|..++- +...+ ...|+.+-+.++++=||.|++||++++++.+-..
T Consensus 368 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~~ 438 (474)
T 1uou_A 368 RAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGPA 438 (474)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSSS
T ss_pred CCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCChh
Confidence 455788999999999987542 22222 2234467889999999999999999999988663
No 45
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=73.47 E-value=10 Score=34.42 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=47.3
Q ss_pred CCcEEEEEEEeeCCeeEEcHHH--HHHHHHHcC-----------CCcEEEEEcCCCCeecCCCEEEEEEechhhh
Q 029760 76 LDMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 137 (188)
Q Consensus 76 ~~~~~~a~i~aKe~gVvaG~~~--a~~if~~l~-----------~~l~v~~~~~DG~~v~~G~~il~v~G~a~~l 137 (188)
+..+.+..+.|.++|+|..++- +..+...+| +..-+.++++=||.|++||++++++.+-...
T Consensus 335 ~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~ 409 (440)
T 2tpt_A 335 PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENN 409 (440)
T ss_dssp CCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSHHH
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCHhh
Confidence 3456788999999999987542 222333344 4677899999999999999999999986633
No 46
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=72.97 E-value=0.39 Score=32.70 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeecCCCEEEEEEec
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
-++|++++|+.|++||.|++++..
T Consensus 19 v~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 19 VATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred EEEEECCCcCEECCCCEEEEEEcc
Confidence 356899999999999999998754
No 47
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=62.06 E-value=0.93 Score=31.17 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.2
Q ss_pred EEEEcCCCCeecCCCEEEEEEec
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
.+|++++|+.|++|++|++++..
T Consensus 14 ~~~~v~~Gd~V~~G~~L~~ie~~ 36 (85)
T 2k7v_A 14 TEVMVKVGDKVAAEQSLITVEGD 36 (85)
T ss_dssp CSCCCSSSCCCCCSSSCCCCSCC
T ss_pred EEEEcCCCCEEcCCCEEEEEEcc
Confidence 45788999999999999988754
No 48
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=60.60 E-value=1.8 Score=35.92 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=0.0
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++|+++.||.|++||.|++++
T Consensus 20 I~~w~vk~Gd~V~~Gd~L~~iE 41 (229)
T 1zy8_K 20 IVKWLKKEGEAVSAGDALCEIE 41 (229)
T ss_dssp ----------------------
T ss_pred EEEEecCCCCEeCCCCEEEEEe
Confidence 4678999999999999888886
No 49
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=58.73 E-value=18 Score=23.12 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=25.4
Q ss_pred EEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 80 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 80 ~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
....+.|..+|++ .+..+..|+.+.+|+.+++++
T Consensus 41 ~~~~i~ap~~G~v------------------~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 41 MENEIPSPRDGVV------------------KRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp EEEEEECSSSEEE------------------EEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEeCCCCEEE------------------EEEEcCCcCEECCCCEEEEEC
Confidence 4566777777777 223577899999999999873
No 50
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=57.77 E-value=6.9 Score=31.76 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.++++||.|++||.|+++-
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred cceEEEeCcCEEcCCCEEEEEC
Confidence 3677899999999999999884
No 51
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=56.49 E-value=6.4 Score=32.87 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.9
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++++++|+.|++|++|+++.-+
T Consensus 44 ~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 44 TLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EECCCTTCEECTTCEEEEECCH
T ss_pred EEEeCCCCEECCCCEEEEEChH
Confidence 5679999999999999999876
No 52
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=55.55 E-value=4.2 Score=33.04 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEcCCCCeecCCCEEEEEEech
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++++++|+.|++|++|+++.-+-
T Consensus 35 ~v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 35 KRNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp EECSCTTCEECTTSCSEEECCHH
T ss_pred EEEcCCCCEecCCCEEEEECcHH
Confidence 35789999999999999998763
No 53
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=55.27 E-value=8.2 Score=30.16 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.0
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.+++.||.|++||.|+++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEcCCCEEEEEC
Confidence 4567899999999999999883
No 54
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=54.50 E-value=2.6 Score=37.91 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=0.0
Q ss_pred EEEEcCCCCeecCCCEEEEEE
Q 029760 111 VEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~ 131 (188)
++|++++||.|++||+|++++
T Consensus 20 ~~w~v~~Gd~V~~gd~l~~vE 40 (428)
T 3dva_I 20 VKWFVKPGDEVNEDDVLCEVQ 40 (428)
T ss_dssp ---------------------
T ss_pred EEEEcCCCCEECCCCEEEEEE
Confidence 677888888888888777765
No 55
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=53.84 E-value=50 Score=22.59 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=46.1
Q ss_pred EEEEEEEeeCC--eeEEc--HHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 029760 79 EVEAHFLAKED--GIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153 (188)
Q Consensus 79 ~~~a~i~aKe~--gVvaG--~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SG 153 (188)
..+.++....+ |.+-| =....+|-+..+ +++++.-. .-...+.+.+|.|+..++..|.+.+++++...||
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tg--a~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTC--CEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhC--CeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 34444444433 33322 356777888877 66654321 1123468999999999999999999999988776
No 56
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=52.65 E-value=8.2 Score=32.47 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.9
Q ss_pred EEEcCCCCeecCCCEEEEEEec
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~ 133 (188)
++++++|+.|++|++|+++.-.
T Consensus 70 ~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 70 SLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECCSCTTCEECTTCEEEEEECS
T ss_pred EEEcCCCCEEcCCCEEEEEChH
Confidence 4578999999999999999976
No 57
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=52.11 E-value=9.9 Score=29.98 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.9
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.+++.||.|++||.|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred ccEEEEeCcCEECCCCEEEEEC
Confidence 3566899999999999999883
No 58
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=49.94 E-value=12 Score=24.73 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=24.9
Q ss_pred EEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEE
Q 029760 80 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 80 ~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
....+.|..+|++.. .++.+|+.|.+|+.|++++
T Consensus 47 ~~~~i~Ap~~G~v~~------------------~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 47 MMNQIEADKSGTVKA------------------ILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEEECSSCEEEEE------------------ECSCTTCEECTTCEEEEEC
T ss_pred EEEEEECCCCEEEEE------------------EEcCCCCEECCCCEEEEEC
Confidence 455666666665533 3577899999999999873
No 59
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=49.29 E-value=57 Score=21.89 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 029760 95 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153 (188)
Q Consensus 95 ~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SG 153 (188)
=.....+-+..+ +++++.-. .-...+..+++.|+..++..|-..+.+++...+|
T Consensus 26 G~~Ik~I~~~tg--a~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 26 GQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp GHHHHHHHHHHC--CEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHC--CEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 467788888888 66654321 1122468999999999999999999999988765
No 60
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=47.24 E-value=9.1 Score=30.18 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEEcCCCCeecCCCEEEEEE
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~ 131 (188)
-++.+++.||.|++|+.|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEEC
T ss_pred ccEEEEeCCCEEcCCCEEEEEC
Confidence 4666899999999999999884
No 61
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=47.07 E-value=18 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.7
Q ss_pred EEcCCCCeecCCCEEEEEE
Q 029760 113 WSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~ 131 (188)
.++..|+.+.+|+.|+++.
T Consensus 58 ~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 58 ILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp ECCCTTCEECSCSEEEEEE
T ss_pred EEeCCcCEECCCCEEEEEE
Confidence 5778999999999999874
No 62
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=47.04 E-value=12 Score=35.28 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 108 SLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 108 ~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
+.-++|++++||.|++||+|++++-
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEC
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 3446899999999999999999874
No 63
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=45.36 E-value=82 Score=22.56 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
....+|-+..+ +++++.-.++ ...+.+++|+|+.+++..|.+.+..++..
T Consensus 31 ~~Ik~I~~~TG--akI~I~~~~~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 31 EMIKKIQNDAG--VRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp HHHHHHHHHHT--CEEEECSSCS---SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cEEEEecCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 56777888887 6776543333 23477999999999999999999988764
No 64
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=45.10 E-value=9.6 Score=32.62 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEcCCCCeecCCCEEEEEEech
Q 029760 113 WSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~G~a 134 (188)
+++.+|+.|++|++|+++.-.-
T Consensus 57 v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 57 RLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp CCSCSSEEECTTSEEEEECCHH
T ss_pred EEcCCCCEEcCCCEEEEECcHH
Confidence 5789999999999999998653
No 65
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=43.01 E-value=7.2 Score=32.88 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEcCCCCeecCCCEEEEEEech
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++++++|+.|++|++|+++.-+.
T Consensus 45 ~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 45 KLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp EECCCTTSCCCSSCCCEECCCHH
T ss_pred EEEECCCCEECCCCEEEEEcCHH
Confidence 56899999999999999998764
No 66
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=41.60 E-value=23 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.1
Q ss_pred EEcCCCCeecCCCEEEEEEec
Q 029760 113 WSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~G~ 133 (188)
.++..|+.+.+|+.|+++...
T Consensus 55 ~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 55 VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp ESCCTTCEEETTSEEEEEECC
T ss_pred EEeCCCCEECCCCEEEEEecC
Confidence 467899999999999998754
No 67
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=40.42 E-value=50 Score=25.07 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=26.7
Q ss_pred CeeEEc-HHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 89 DGIIAG-IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 89 ~gVvaG-~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
+-+.-| .+++...+ |.-..|++ .+.|+.|++|+.|+.++.
T Consensus 30 ~~~~vGit~~a~~~l---G~i~~V~l-p~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 30 KVATVGITNHAQEQL---GDVVYVDL-PEVGREVKKGEVVASIES 70 (136)
T ss_dssp TEEEEEECHHHHHHH---CSEEEEEC-CCTTCEECTTCEEEEEEE
T ss_pred CEEEEeeEhhhcccC---CCcEEEEe-cCCCCEEeCCCEEEEEEE
Confidence 445667 56655444 42123332 489999999999999984
No 68
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=40.23 E-value=20 Score=23.65 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.5
Q ss_pred EEcCCCCeecCCCEEEEEEe
Q 029760 113 WSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~G 132 (188)
+++.+|+.+.+|+.|+++..
T Consensus 58 ~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 58 IVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp ESSCTTCEECTTCEEEEECC
T ss_pred EEcCCcCEECCCCEEEEEec
Confidence 57789999999999999864
No 69
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=40.14 E-value=90 Score=21.53 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 149 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~ 149 (188)
.....|-+..+ +++.+ .++|......+.+++|.|+..++..|-..+..++.
T Consensus 35 ~~Ik~I~~~tg--a~I~I-~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 35 ETIKQLQERAG--VKMVM-IQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR 85 (94)
T ss_dssp SHHHHHHHHHT--SEEEE-CCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC--CeEEe-cCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHh
Confidence 45666777777 66653 34554334468899999999999999998888764
No 70
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=39.34 E-value=18 Score=31.56 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.4
Q ss_pred EEc-CCCCeecCCCEEEEEEec
Q 029760 113 WSL-KDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 113 ~~~-~DG~~v~~G~~il~v~G~ 133 (188)
+++ .+|+.|++||+|+++.-+
T Consensus 135 v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 135 VYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECSCCTTCEECTTCEEEEEECC
T ss_pred EEeCCCCCEEcCCCEEEEEcCH
Confidence 456 899999999999999954
No 71
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=39.11 E-value=47 Score=28.39 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=41.0
Q ss_pred EEEEEEeeCCeeEEcHHHHHHHHHHcCCCc-EEEEEcCCCCeecC----CCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 80 VEAHFLAKEDGIIAGIALAEMIFHEVDPSL-KVEWSLKDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 80 ~~a~i~aKe~gVvaG~~~a~~if~~l~~~l-~v~~~~~DG~~v~~----G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
+...+.+..+|++..++..+.+.+. +++ .+.++.+.|+.+.+ ++.++.+.....+.-.+++.+..+++.
T Consensus 337 ~~~~~~~~~~G~~~~i~g~~~~~~~--p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~ 410 (425)
T 3vot_A 337 GNYIIPVQGSGTFEKIDGLEEVKQR--QEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDE 410 (425)
T ss_dssp EEEECCCCSCEEEEEEETHHHHHTC--TTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCeEEEecCCHHHHhcC--CCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCc
Confidence 3344456678987655444444432 344 68888999999864 455555544444555666665555443
No 72
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=38.89 E-value=16 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.8
Q ss_pred EEEcCCCCeecCCCEEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGKV 130 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v 130 (188)
.++++||+.|++|++|++.
T Consensus 63 ~L~V~dG~~V~~G~~laew 81 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW 81 (190)
T ss_dssp EESSCTTCEECTTCEEEEC
T ss_pred EEEecCCCEEcCCCEEEEE
Confidence 3589999999999999984
No 73
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=38.69 E-value=18 Score=36.38 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=21.0
Q ss_pred EEEEEcCCCCeecCCCEEEEEEe
Q 029760 110 KVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 110 ~v~~~~~DG~~v~~G~~il~v~G 132 (188)
-++|++++||.|++||+|+.++.
T Consensus 1088 v~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A 1088 VTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp EEEECCCTTCEECTTCEEEEEES
T ss_pred EEEEEeCCCCEECCCCEEEEEEe
Confidence 36899999999999999999984
No 74
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=36.75 E-value=1.2e+02 Score=22.49 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHH
Q 029760 95 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 151 (188)
Q Consensus 95 ~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~ 151 (188)
=.....+-+..| +++.+ -+||..-..++..+++.|+..++..|.+.++.+++..
T Consensus 104 G~~I~~i~~~tg--a~I~i-~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 104 GKTVNELQNLTA--AEVVV-PRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp GHHHHHHHHHHC--CEEEC-CTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhC--CeEEE-CCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 466777888887 67754 3455443445569999999999999999999988753
No 75
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=36.65 E-value=20 Score=36.52 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=20.3
Q ss_pred EEEEcCCCCeecCCCEEEEEEe
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G 132 (188)
++|+++.||.|++||+|+.++-
T Consensus 1179 ~~~~v~~Gd~V~~g~~l~~iEa 1200 (1236)
T 3va7_A 1179 WKPVAAVGDHVEAGDGVIIIEA 1200 (1236)
T ss_dssp EEESSCTTCEECSSCEEEEEEE
T ss_pred EEEEcCCCCEECCCCEEEEEEe
Confidence 5799999999999999999985
No 76
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=36.53 E-value=67 Score=26.53 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHh-hcCCCCCcccccc--------cCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 029760 49 DLKGVVKLALAE-DAGDRGDVTCMAT--------IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD 119 (188)
Q Consensus 49 ~~~~~i~~~L~E-D~~~~gDlTt~~l--------~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~ 119 (188)
.+++.|+.++.| .++ ..|+..+.+ +.+.+.+...+..+++-.=...++...+|+.+|-+.+++..+.++
T Consensus 13 TveeAi~~Al~~L~v~-~d~l~~eVleeg~kGffGiG~k~a~V~v~~~~~~~~~a~~~L~~ll~~m~~~~~i~~~~~~~- 90 (225)
T 3gku_A 13 TVEEAVTKALIELQTT-SDKLTYEIVEKGSAGFLGIGSKPAIIRAKRKETLQDKAIEFLEQVFDAMNMAVDISVEYNET- 90 (225)
T ss_dssp SHHHHHHHHHHHHTCC-GGGEEEEEEECCBCCC--CCCBCEEEEEEECCCHHHHHHHHHHHHHHHTTCCCEEEEEEETT-
T ss_pred CHHHHHHHHHHHhCCC-HHHEEEEEEecCCCccccccCceEEEEEEeccchHHHHHHHHHHHHHHcCCCeEEEEEEecC-
Confidence 367777777765 122 234433222 223455666666665543345678888999998555665433221
Q ss_pred eecCCCEEEEEEechhhhHHHHH-HHHHHHHHHhHH
Q 029760 120 HVHKGLQFGKVSGRAHSIVIAER-VVLNFMQRMSGI 154 (188)
Q Consensus 120 ~v~~G~~il~v~G~a~~ll~aER-v~LN~L~~~SGI 154 (188)
.+.+.+.+.|+-..+|.+-+ -.|+-||++...
T Consensus 91 ---~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 91 ---EKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp ---TTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 14578889998777776655 467888886543
No 77
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=35.20 E-value=22 Score=28.38 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.0
Q ss_pred EEEEcCCCCeecCCCEEEEEE
Q 029760 111 VEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~ 131 (188)
....+.||+.|++|++|+++-
T Consensus 166 a~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 166 AIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp CEESSCTTCEECTTCEEEEEE
T ss_pred CEEEEcCCCEEcCCCEEEEcc
Confidence 345789999999999999874
No 78
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=34.80 E-value=28 Score=23.38 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=27.8
Q ss_pred EEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 79 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 79 ~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+....+.|..+|++. +.++..|+.+.+|+.|+++...
T Consensus 37 k~~~~i~Ap~~G~V~------------------~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 37 KASMEVPAPFAGVVK------------------ELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CSEEEEECSSCBCCC------------------EECSCTTCCBCTTSEEEEEECC
T ss_pred ccEEEEECCCCEEEE------------------EEEeCCCCEECCCCEEEEEEcC
Confidence 456677777776532 2467899999999999999754
No 79
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=34.63 E-value=33 Score=23.73 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=19.2
Q ss_pred EEEcCCCCeecCCCEEEEEEech
Q 029760 112 EWSLKDGDHVHKGLQFGKVSGRA 134 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~v~G~a 134 (188)
++++.+|+.+.+|+.|++++...
T Consensus 60 ~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 60 KLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EECCCSSCEECTTSEEEEEECSC
T ss_pred EEEcCCCCEeCCCCEEEEEecCC
Confidence 35788999999999999987543
No 80
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=34.08 E-value=22 Score=29.03 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.2
Q ss_pred EEEcCCCCeecCCCEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGK 129 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~ 129 (188)
.++++||+.|++|++|++
T Consensus 22 ~L~V~dG~~VkkG~~lae 39 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAE 39 (193)
T ss_dssp EESCCTTCEECTTCEEEE
T ss_pred EEEECCCCEEcCCCEEEE
Confidence 358999999999999998
No 81
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=33.76 E-value=8.7 Score=36.27 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEe
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
.-++|++++||.|++||+|++++-
T Consensus 612 ~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 612 SIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp ------------------------
T ss_pred EEEEEEeCCCCEEcCCCEEEEEEe
Confidence 457899999999999999998873
No 82
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=33.65 E-value=29 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=18.5
Q ss_pred EEcCCCC-eecCCCEEEEEEech
Q 029760 113 WSLKDGD-HVHKGLQFGKVSGRA 134 (188)
Q Consensus 113 ~~~~DG~-~v~~G~~il~v~G~a 134 (188)
+++.+|+ .+..|+.|+++.-..
T Consensus 62 ~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 62 ILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp ESSCTTCCCEETTCEEEEEESSS
T ss_pred EEECCCCeEECCCCEEEEEEccc
Confidence 5788999 899999999997543
No 83
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=31.94 E-value=1.1e+02 Score=21.77 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 149 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~ 149 (188)
....+|-+..+ +++++.-.+-..-...+.+++|.|+.+++..|...+++++.
T Consensus 27 ~~Ik~I~~~TG--a~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 27 ENVKAINQQTG--AFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp CHHHHHHHHSS--SEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhC--CEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHh
Confidence 56777788877 66654322100112356899999999999999888887753
No 84
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=30.00 E-value=22 Score=34.20 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCeecCCCEEEEEEe
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
.-++|.+++|+.|++||+|++++.
T Consensus 659 ~V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 659 KVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp EEEEECSCTTCCBCTTCCCEEEES
T ss_pred EEEEEEeCCCCeeCCCCEEEEEec
Confidence 346899999999999999999984
No 85
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=28.48 E-value=94 Score=22.33 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=41.6
Q ss_pred eeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHH
Q 029760 90 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 149 (188)
Q Consensus 90 gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~ 149 (188)
|+.+|+..+...++..+ +++..+.. +.+|...+.++|+..++-.+=+...+..+
T Consensus 12 g~~~~I~AAD~a~KAA~--V~lv~~~~----~~~G~~~vii~GdVsaV~~Av~ag~~~~~ 65 (99)
T 3cim_A 12 GFPAVVEAADSMVKAAR--VTLVGYEK----IGSGRVTVIVRGDVSEVQASVSAGIEAAN 65 (99)
T ss_dssp SHHHHHHHHHHHHHHSS--EEEEEEEE----EETTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCC--cEEEEEEe----cCCcEEEEEEEEcHHHHHHHHHHHHHHHh
Confidence 77888999999999876 77654333 67889999999999888777666655544
No 86
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=27.10 E-value=41 Score=28.88 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.1
Q ss_pred EEEEcCCCCeecCCCEEEEEEe
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G 132 (188)
++..+.+|+.|++||+|+++.-
T Consensus 278 ~~~~~~~g~~V~~G~~La~i~d 299 (354)
T 3cdx_A 278 FEPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp EEESCCTTCEECTTSEEEEEEC
T ss_pred EEEeCCCCCEeCCCCEEEEEEC
Confidence 5566789999999999999984
No 87
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=26.54 E-value=42 Score=28.64 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.9
Q ss_pred EEcCCCCeecCCCEEEEEEec
Q 029760 113 WSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 113 ~~~~DG~~v~~G~~il~v~G~ 133 (188)
..++-|+.|++||+|++|.-+
T Consensus 270 ~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 270 IMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp ESSCTTCEECTTCEEEEEECS
T ss_pred EcCCCCCEEcCCCEEEEEEcC
Confidence 457899999999999999854
No 88
>3ssr_B Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 1.60A {Thermosynechococcus elongatus} PDB: 3sss_A
Probab=26.48 E-value=1e+02 Score=22.77 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=41.5
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
.|+.+++.-++..++..+ +++..+ +.+..|...+.++|+..++=.+-....+..++
T Consensus 11 ~g~~~aI~AADam~KAA~--V~lv~~----~~~~~G~~~v~i~GDVsaV~aAv~ag~~aa~~ 66 (110)
T 3ssr_B 11 RGFPAVVEAADAMVKAAR--VTLVGY----EKIGSGRVTVIVRGDVSEVQASVAAGVDSAKR 66 (110)
T ss_dssp ESHHHHHHHHHHHHHHSS--EEEEEE----EEEETTEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhCC--cEEEEE----EecCCCEEEEEEEEcHHHHHHHHHHHHHHHHh
Confidence 467788999999999876 666543 34567889999999999887776665554433
No 89
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=25.95 E-value=66 Score=24.16 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=26.1
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
+.+.-|+... ....+|.=..|+ ..+.|+.|++|+.++.++.
T Consensus 21 ~~~~vGitd~--a~~~lG~i~~v~-lp~~G~~V~~g~~l~~vEs 61 (131)
T 1hpc_A 21 SVATIGITDH--AQDHLGEVVFVE-LPEPGVSVTKGKGFGAVES 61 (131)
T ss_dssp TEEEEEECHH--HHHHHCSEEEEE-CCCTTCEECBTSEEEEEEE
T ss_pred CEEEEEEehh--hcccCCCceEEE-ecCCCCEEeCCCEEEEEEe
Confidence 4455666432 234556312232 2489999999999999985
No 90
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus}
Probab=24.90 E-value=57 Score=18.40 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHHHHHHHhC
Q 029760 148 MQRMSGIATLTRAMADLAH 166 (188)
Q Consensus 148 L~~~SGIAT~T~~~V~aa~ 166 (188)
|.-+++|++.|.-+|+++.
T Consensus 2 L~aak~i~~a~~~Lvk~A~ 20 (26)
T 1zw2_B 2 LEAAKSIAAATSALVKAAS 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 6778999999999999875
No 91
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=24.78 E-value=72 Score=23.81 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=25.4
Q ss_pred eEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEec
Q 029760 91 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 133 (188)
Q Consensus 91 VvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~ 133 (188)
+.-|+... ....+|.=..|+ ..+.|+.|++|+.++.++..
T Consensus 24 ~~vGitd~--a~~~lG~i~~v~-lp~vG~~V~~g~~l~~vEs~ 63 (128)
T 3a7l_A 24 YTVGITEH--AQELLGDMVFVD-LPEVGATVSAGDDCAVAESV 63 (128)
T ss_dssp EEEEECHH--HHHHHCSEEEEE-CCCTTCEECTTCEEEEEEES
T ss_pred EEEEEehH--HhccCCceEEEE-ecCCCCEEeCCCEEEEEEec
Confidence 45565332 234555312333 35899999999999999854
No 92
>4axj_A EUTM, ethanolamine carboxysome structural protein; bacterial microcompartment; 1.62A {Clostridium difficile}
Probab=24.75 E-value=1.5e+02 Score=21.70 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=40.2
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHH
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 148 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L 148 (188)
.|+.+++.-++..++..+ +++..+- ++.+|...+.++|+..++=.+-....+.-
T Consensus 14 ~g~~~aI~AADam~KaA~--V~lv~~~----~~~~G~~~v~i~GDVsaV~aAv~ag~~aa 67 (104)
T 4axj_A 14 KGLVGAIEAADAMVKAAN--VQLVGKE----QVGGGLVTVMVRGDVGAVKAATDAGAAAA 67 (104)
T ss_dssp ESHHHHHHHHHHHHHHSS--CEEEEEE----ECSTTEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhCC--cEEEEEE----ecCCeEEEEEEEEcHHHHHHHHHHHHHHH
Confidence 467788999999999887 7775442 24557889999999998877766555443
No 93
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=24.48 E-value=1.2e+02 Score=24.25 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=45.0
Q ss_pred eeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 90 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 90 gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
++..++..+...+|..+ +++.. -+.+-+|...+.++|+..++-.+-...++..++
T Consensus 12 ~~~~~i~aaD~a~Kaa~--V~l~~----~~~~~~G~~~~ii~Gdv~aV~~Av~a~~~~~~~ 66 (192)
T 3n79_A 12 SIAKGMELGDAMLKSAN--VDLLV----SKTISPGKFLLMLGGDIGAIQQAIETGTSQAGE 66 (192)
T ss_dssp CHHHHHHHHHHHHHHSS--CEEEE----EEEETTTEEEEEEEECHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhccCC--cEEEE----EEeecCceEEEEEEccHHHHHHHHHHHHHHhhc
Confidence 67889999999999876 77643 236778999999999999999988888877654
No 94
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=24.22 E-value=38 Score=34.11 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCeecCCCEEEEEE
Q 029760 109 LKVEWSLKDGDHVHKGLQFGKVS 131 (188)
Q Consensus 109 l~v~~~~~DG~~v~~G~~il~v~ 131 (188)
.-++|.++.||.|++||+|+.++
T Consensus 1105 ~v~~~~v~~Gd~V~~G~~l~~iE 1127 (1165)
T 2qf7_A 1105 VISRVFVSSGQAVNAGDVLVSIE 1127 (1165)
T ss_dssp EEEEECCSSCCCC---CEEEEEE
T ss_pred EEEEEEcCCcCEeCCCCEEEEEE
Confidence 34689999999999999999998
No 95
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=24.19 E-value=75 Score=23.70 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=25.9
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEe
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G 132 (188)
+-+.-|+... ....+|.-..|+ ..+.|+.|++|+.++.|+.
T Consensus 21 ~~~~vGit~~--a~~~lG~i~~v~-lp~vG~~V~~g~~l~~vEs 61 (128)
T 1onl_A 21 DTVLVGITDY--AQDALGDVVYVE-LPEVGRVVEKGEAVAVVES 61 (128)
T ss_dssp TEEEEEECHH--HHHHHCSEEEEE-CBCTTCEECTTCEEEEEEE
T ss_pred CEEEEEeehH--HhhcCCCceEEE-ecCCCCEEeCCCEEEEEEE
Confidence 4455565332 234555312232 3589999999999999985
No 96
>3ngk_A Propanediol utilization protein PDUA; BMC shell protein, carboxysome, unknown FU; 2.26A {Salmonella enterica subsp}
Probab=24.17 E-value=1.5e+02 Score=21.51 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=40.9
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHH
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 148 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L 148 (188)
.|+.++++-+...++..+ +++..+- ++.+|...+.++|+..++=.+-....+.-
T Consensus 20 ~g~~~aI~AADam~KAA~--V~lv~~~----~~~~G~~~v~v~GDVsaV~aAv~ag~~aa 73 (102)
T 3ngk_A 20 KGLTAAIEAADAMVKSAN--VMLVGYE----KIGSGLVTVIVRGDVGAVKAATDAGAAAA 73 (102)
T ss_dssp ESHHHHHHHHHHHHHHSS--CEEEEEE----ECSTTEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhCC--cEEEEEE----ecCCcEEEEEEEEeHHHHHHHHHHHHHHH
Confidence 478899999999999987 7765442 34568889999999998877766555443
No 97
>2a1b_A CCMK2, carbon dioxide concentrating mechanism protein CC 2; cyclic hexamer, C6 point symmetry, carboxysome; 2.90A {Synechocystis SP} SCOP: d.58.56.1
Probab=24.08 E-value=1.2e+02 Score=22.55 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=42.3
Q ss_pred eeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 90 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 90 gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
|+.+|+..+...++..+ +++..+.. +.+|...+.++|+..++-.+=+.+.+..++
T Consensus 12 g~~~~I~AAD~avKAAn--Velv~~~~----~~~G~~~vii~GDVsaV~aAveag~~~~~~ 66 (116)
T 2a1b_A 12 GFPAVVEAADSMVKAAR--VTLVGYEK----IGSGRVTVIVRGDVSGVQASVSAGIEAANR 66 (116)
T ss_dssp SSHHHHHHHHHHHHHSS--CEEEEEEE----CSSSEEEEEEESCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCC--cEEEEEEe----cCCcEEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 77889999999999887 77654433 567889999999998887776666655443
No 98
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=23.49 E-value=50 Score=28.71 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=18.7
Q ss_pred EEEEcCCCCeecCCCEEEEEEe
Q 029760 111 VEWSLKDGDHVHKGLQFGKVSG 132 (188)
Q Consensus 111 v~~~~~DG~~v~~G~~il~v~G 132 (188)
++..++-|+.|++||+|++|.-
T Consensus 301 ~~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 301 VEYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEECSCTTCCBCTTCEEEEEEC
T ss_pred EEEeCCCCCEeCCCCEEEEEEc
Confidence 3456789999999999999986
No 99
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=23.32 E-value=1.7e+02 Score=19.52 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHH
Q 029760 95 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 148 (188)
Q Consensus 95 ~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L 148 (188)
=.....|-+..+ +++.+ -.||..-...+..+.+.|+..++..|-..+..++
T Consensus 33 G~~Ik~I~~~tg--a~I~i-~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 33 GETIKQLQERAG--VKMIL-IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp THHHHHHHHHHT--CEEEE-CSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC--CEEEE-cCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 356677777777 66654 3466544456889999999999999988888775
No 100
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=22.87 E-value=42 Score=29.44 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.3
Q ss_pred EEEcCCCCeecCCCEEEE
Q 029760 112 EWSLKDGDHVHKGLQFGK 129 (188)
Q Consensus 112 ~~~~~DG~~v~~G~~il~ 129 (188)
.++++||+.|++|+.|++
T Consensus 62 ~l~v~~g~~V~~g~~la~ 79 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAE 79 (352)
T ss_dssp EESCCTTCEECTTCEEEE
T ss_pred EEEecCCCEEcCCCEEEE
Confidence 458999999999999988
No 101
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=22.66 E-value=56 Score=23.35 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred EEcCCCC-eecCCCEEEEEEechhh
Q 029760 113 WSLKDGD-HVHKGLQFGKVSGRAHS 136 (188)
Q Consensus 113 ~~~~DG~-~v~~G~~il~v~G~a~~ 136 (188)
+++..|+ .|..|+.|+++.-...+
T Consensus 64 i~v~~G~~~V~~G~~l~~i~~~~~~ 88 (108)
T 2dne_A 64 ILVAEGTRDVPIGAIICITVGKPED 88 (108)
T ss_dssp CSSCTTCCSEETTCEEEEEESCHHH
T ss_pred EEeCCCCeeecCCCEEEEEecCccc
Confidence 4678998 89999999999876544
No 102
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=22.35 E-value=75 Score=23.69 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=20.9
Q ss_pred EEEcCCCC-eecCCCEEEEEEechhhh
Q 029760 112 EWSLKDGD-HVHKGLQFGKVSGRAHSI 137 (188)
Q Consensus 112 ~~~~~DG~-~v~~G~~il~v~G~a~~l 137 (188)
++++.+|+ .|..|+.|+++.-...++
T Consensus 83 ~i~v~~Gd~~V~~G~~L~~i~~~~~~~ 109 (128)
T 1y8o_B 83 KILVPEGTRDVPLGTPLCIIVEKEADI 109 (128)
T ss_dssp EESSCTTCCSEETTCEEEEEESSGGGG
T ss_pred EEEeCCCCeeecCCCEEEEEecCccch
Confidence 35788998 899999999998765443
No 103
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=22.07 E-value=1.4e+02 Score=22.41 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=42.3
Q ss_pred eeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 90 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 90 gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
++.+++..+...++..+ +++..+.. +.+|...+.++|+..++-.+=..+.+..++
T Consensus 14 ~~~~~I~AADaavKAAn--Velv~~e~----~~~G~~~vii~GDVsaV~aAveag~~~~~~ 68 (125)
T 2a10_A 14 GFPGILAAADAMVKAGR--ITIVGYIR----AGSARFTLNIRGDVQEVKTAMAAGIDAINR 68 (125)
T ss_dssp SHHHHHHHHHHHHHHSS--CEEEEEEE----EETTEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhcC--cEEEEEEe----cCCCEEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 37778899999999887 77654433 568889999999998887777776665554
No 104
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=22.00 E-value=2e+02 Score=21.45 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNF 147 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~ 147 (188)
.....+-+..+ +++++.-.....-...+..+++.|+..++..|...+..+
T Consensus 124 ~~Ik~I~~~tg--a~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 124 ETIKSISQQSG--ARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEK 173 (174)
T ss_dssp HHHHHHHHHHC--CEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHC--CEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 56777888887 566543321111134578999999999999998888765
No 105
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=21.65 E-value=2.4e+02 Score=20.56 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 149 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~ 149 (188)
....++-+..+ +++++ .+|+..-...+.++++.|+..++..|-..++.++.
T Consensus 22 ~~Ik~i~~~tg--~~I~i-~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~ 72 (164)
T 2jvz_A 22 ETIKQLQERAG--VKMIL-IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 72 (164)
T ss_dssp HHHHHHHHTSC--SEEEE-CCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CeEEE-ecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 45677777777 66654 34553323346799999999999888888887765
No 106
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=21.31 E-value=2.4e+02 Score=20.52 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
.....+-+..+ +++.+.-.++ ...+..+++.|+..++..|.+.+..+++.
T Consensus 111 ~~I~~i~~~tg--~~I~i~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 111 EMIKKIQNDAG--VRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHTC--CEEEECCCCT---TSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHC--CeEEEeCCCC---CCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 56777777777 6666543332 23478999999999999999999988764
No 107
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=21.23 E-value=1.9e+02 Score=19.31 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecC--CCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHK--GLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~--G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
.....|-+..| +++.+. ++++. .+ .+..+++.|+..++..|...+.+++..
T Consensus 23 ~~Ik~I~~~tg--a~I~I~-~~~~~-~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 23 KTLVEYQELTG--ARIQIS-KKGEF-LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp HHHHHHHHHHC--CEEEEC-CTTCB-STTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhC--CEEEEc-cCCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 45666777777 666543 23332 23 368999999999999999999998754
No 108
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=20.73 E-value=2.1e+02 Score=19.49 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 150 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~ 150 (188)
.....|-+..+ +++++.-.+ + ...+..++|.|+..++..|...+..++..
T Consensus 35 ~~Ik~I~~~tg--a~I~I~~~~-~--g~~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 35 EQISRIQQESG--CKIQIAPDS-G--GLPERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHHHHSC--CEEEECSCC-T--TCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC--CEEEEcCCC-C--CCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 56777888877 666554321 1 12468999999999999999998888754
No 109
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=20.53 E-value=2.7e+02 Score=20.73 Aligned_cols=51 Identities=10% Similarity=0.354 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHHHHH
Q 029760 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 151 (188)
Q Consensus 96 ~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~ 151 (188)
....++-+..+ +++++.-.++. ..+.++++.|+..++..|...+.+++...
T Consensus 23 ~~Ik~i~~~tg--~~I~i~~~~~~---~~~r~v~I~G~~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 23 EMIKKIQNDAG--VRIQFKPDDGT---TPERIAQITGPPDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp HHHHHHHHHHC--CEEEEECCTTS---CSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC--CEEEEecCCCC---CCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 55677777777 66765433332 34678899999999999999998888754
No 110
>3mpy_A Ethanolamine utilization protein EUTM; bacterial microcompartment, shell protein, ethanolamine AMMO lyase, carboxysome, membrane protein; 2.00A {Escherichia coli} PDB: 3mpw_G 3i6p_A
Probab=20.51 E-value=2.3e+02 Score=20.58 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=40.0
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHH
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 148 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L 148 (188)
.|+.+++.-+...++..+ +++..+. ++.+|...+.++|+..++=.+-....+.-
T Consensus 10 ~g~~~aI~AADam~KAA~--V~l~~~~----~~~~G~~~v~i~GDVsaV~aAv~ag~~aa 63 (103)
T 3mpy_A 10 RGLVALIEASDAMVKAAR--VKLVGVK----QIGGGLCTAMVRGDVAACKAATDAGAAAA 63 (103)
T ss_dssp ESHHHHHHHHHHHHHHSS--EEEEEEE----ECSTTEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhCC--cEEEEEE----ecCCCEEEEEEEEeHHHHHHHHHHHHHHH
Confidence 367788999999999876 7765442 24468899999999998877766555443
No 111
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=20.51 E-value=48 Score=26.16 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.6
Q ss_pred EcCCCCeecCCCEEEEE
Q 029760 114 SLKDGDHVHKGLQFGKV 130 (188)
Q Consensus 114 ~~~DG~~v~~G~~il~v 130 (188)
.++.|+.|++||+|..+
T Consensus 86 ~V~~G~~V~~Gq~IG~v 102 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVY 102 (182)
T ss_dssp CCCTTCEECTTCEEEEE
T ss_pred ccCCCCEEcCCCEEEee
Confidence 47899999999999988
No 112
>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer, structural protein; 2.00A {Synechocystis SP}
Probab=20.18 E-value=1.2e+02 Score=22.70 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=40.6
Q ss_pred CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCCEEEEEEechhhhHHHHHHHHHHH
Q 029760 89 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 148 (188)
Q Consensus 89 ~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~~il~v~G~a~~ll~aERv~LN~L 148 (188)
.++.+|+..++..++..+ +++..+.. +.+|...+.++|+..++-.+=+...+..
T Consensus 11 ~~~~~aI~AADam~KAA~--V~Lv~~~~----~~~G~~~vii~GDVsAV~aAv~ag~~~a 64 (122)
T 3bn4_A 11 LGFPAVVEAADSMVKAAR--VTLVGYEK----IGSGRVTVIVRGDVSEVQASVTAGIENI 64 (122)
T ss_dssp ESHHHHHHHHHHHHHHSS--CEEEEEEE----EETTEEEEEEEECHHHHHHHHHHHHHHG
T ss_pred cCHHHHHHHHHHHHhhCC--cEEEEEEc----cCCcEEEEEEEEcHHHHHHHHHHHHHHH
Confidence 356778899999999887 77654433 6788999999999998877665555443
Done!