RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029760
(188 letters)
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase
(carboxylating).
Length = 308
Score = 276 bits (707), Expect = 3e-94
Identities = 119/155 (76%), Positives = 135/155 (87%)
Query: 34 GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA 93
+ AI PSHPTYD++ V+KLALAEDAGDRGDVTC+ATIP DME EA FLAK DG++A
Sbjct: 3 AEMAMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLA 62
Query: 94 GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153
GIALA+M+F EVDPSLKVEW+ DGD VHKGL+FGKV+G AHSI++AERVVLNFMQRMSG
Sbjct: 63 GIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSG 122
Query: 154 IATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 188
IATLT+AMAD A PA ILETRKTAP LRL+DKWAV
Sbjct: 123 IATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 268
Score = 187 bits (478), Expect = 5e-60
Identities = 73/137 (53%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Query: 54 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 113
V+LALAED G RGD+T A IP D EA +AKE+G++AG+ +AE +F +DP ++VEW
Sbjct: 4 VRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEW 62
Query: 114 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATIL 171
+KDGD V G V G A S++ AER LNF+QR+SGIATLTR + A IL
Sbjct: 63 LVKDGDRVEPGQVLATVEGPARSLLTAERTALNFLQRLSGIATLTRRYVEALAGTKARIL 122
Query: 172 ETRKTAPTLRLLDKWAV 188
+TRKT P LRLL+K+AV
Sbjct: 123 DTRKTTPGLRLLEKYAV 139
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 269
Score = 167 bits (426), Expect = 4e-52
Identities = 67/137 (48%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 54 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 113
+ ALAED G GD+T A IP D A +AKE+G++AG+ +AE +F +D ++VEW
Sbjct: 4 LDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEW 61
Query: 114 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATIL 171
+KDGD V G +V G A S++ AERV LN +QR+SGIAT TR + A A I
Sbjct: 62 LVKDGDRVEAGQVLLEVEGPARSLLTAERVALNLLQRLSGIATATRRYVEAARGTKARIA 121
Query: 172 ETRKTAPTLRLLDKWAV 188
+TRKT P LRLL+K+AV
Sbjct: 122 DTRKTTPGLRLLEKYAV 138
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 156 bits (398), Expect = 6e-48
Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 3/145 (2%)
Query: 46 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 105
P + +V AL ED G RGD+T A IP D + EA +AKE G++AG+ +AE +F +
Sbjct: 2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELL 60
Query: 106 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 165
PS++++W +KDGD V G ++ G A +++ AER LNF+Q +SGIAT T M +
Sbjct: 61 GPSIEIQWLVKDGDRVKPGDVLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEAL 120
Query: 166 --HPATILETRKTAPTLRLLDKWAV 188
I +TRKT P LRLL+K+AV
Sbjct: 121 RGTNVRIADTRKTTPGLRLLEKYAV 145
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 265
Score = 137 bits (348), Expect = 1e-40
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 5/137 (3%)
Query: 54 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 113
+ L ED G GD+T A +P A +AKEDG++AG+ +A +F ++ ++VEW
Sbjct: 2 LDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEW 58
Query: 114 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATIL 171
+KDGD V G +V G A S++ AER LNF+ R+SGIAT TR + A I
Sbjct: 59 LVKDGDRVEPGEVVAEVEGPARSLLTAERTALNFLGRLSGIATATRKYVEAARGTNVRIA 118
Query: 172 ETRKTAPTLRLLDKWAV 188
+TRKT P LRLL+K+AV
Sbjct: 119 DTRKTTPGLRLLEKYAV 135
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 136 bits (345), Expect = 5e-40
Identities = 61/141 (43%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 50 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 109
LK + ED G+ GDVT P ++ E FLAK+ G+ AG + E + +D +
Sbjct: 6 LKQALNRFFLEDIGE-GDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERI 64
Query: 110 KVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR-AMADLAHPA 168
+VE KDGD V KG V G S++ ERV+LN +QRMSGIAT+TR A+ L
Sbjct: 65 EVELHKKDGDLVKKGEIIATVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDDSH 124
Query: 169 T-ILETRKTAPTLRLLDKWAV 188
I +TRKT P LR+ DK+AV
Sbjct: 125 IRICDTRKTTPGLRMFDKYAV 145
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 123 bits (311), Expect = 6e-35
Identities = 63/149 (42%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 42 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 101
L SH +V+ ALAEDA GD+T IP AH A+E G+ +GI +
Sbjct: 2 LTSHIIDR---IVEAALAEDA-PWGDITSETLIPASATASAHLTAREPGVFSGIDVFAAA 57
Query: 102 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAM 161
F VDP++ V ++ DG+ G V+G A S++ AER+ LNF QRMSGIATLT A
Sbjct: 58 FRLVDPAITVTLAVADGERFEAGDILATVTGPARSVLTAERIALNFTQRMSGIATLTAAF 117
Query: 162 ADLAH--PATILETRKTAPTLRLLDKWAV 188
D + A I++TRKT P LR+ +++AV
Sbjct: 118 VDAVNGTRARIVDTRKTTPGLRIFERYAV 146
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 116 bits (292), Expect = 4e-32
Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 2/149 (1%)
Query: 42 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 101
LP P L+ +V+ AL ED G GD+T A +P D +A++ G+IAG+ LA +
Sbjct: 3 LPPLPRLMLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLA 62
Query: 102 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAM 161
F VDP +++ L DG V G +SG A ++ AER LNF+ +SGIAT T ++
Sbjct: 63 FRLVDPEIEMRRHLPDGAAVAPGDVIATISGPARGLLTAERTALNFLCHLSGIATATASI 122
Query: 162 ADL--AHPATILETRKTAPTLRLLDKWAV 188
A ++ TRKT P LR L+K+AV
Sbjct: 123 VAAIAGTKAKVVCTRKTTPGLRALEKYAV 151
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 115 bits (291), Expect = 5e-32
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 58 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 117
+ EDA GDVT A IP D+ A +AK+DG+IAG+ A+ +F +KVE +D
Sbjct: 10 VEEDA-PFGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHF--GVKVEVRKRD 66
Query: 118 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP----ATILET 173
G+ V G ++ G A +I++ ER LN + RMSGIAT TR + +L + T
Sbjct: 67 GEEVKAGEVILELKGNARAILLVERTALNIIGRMSGIATETRKLVELVKAVNPKVRVAGT 126
Query: 174 RKTAPTLRLLDKWAV 188
RKT P LRLLDK A+
Sbjct: 127 RKTLPGLRLLDKKAI 141
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
N-terminal domain has an alpha/beta hammerhead fold.
Length = 88
Score = 107 bits (271), Expect = 4e-31
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 63 GDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 122
RGD+T A IP D +A +AKE+G++AG+ A +F + L+VEW +KDG+ V
Sbjct: 1 IGRGDLTTEALIPPDKRAKAVIIAKEEGVVAGLEEAAEVFELLG--LEVEWLVKDGERVE 58
Query: 123 KGLQFGKVSGRAHSIVIAERVVLNFMQRMS 152
G ++ G A +++ AERV LNF+QR+S
Sbjct: 59 AGDVILEIEGPARALLTAERVALNFLQRLS 88
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 112 bits (281), Expect = 1e-30
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 54 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 113
V+ ALAED G GD+T IP + +A + +E +IAG A + +F ++DP + V W
Sbjct: 13 VRRALAEDIGS-GDITAQ-LIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHW 70
Query: 114 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATIL 171
+ DG+ V + G A S++ ER LNF+Q +SG+AT R ADL +L
Sbjct: 71 QVADGERVSANQVLFHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVAGTQVKLL 130
Query: 172 ETRKTAPTLRLLDKWAV 188
+TRKT P LRL K+AV
Sbjct: 131 DTRKTLPGLRLAQKYAV 147
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 289
Score = 108 bits (271), Expect = 5e-29
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--D 106
+ + V++ AL ED DVT +AT+P D A +++E G++AG+ +A ++ EV
Sbjct: 14 EARAVIRRALDEDLRYGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGT 73
Query: 107 PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH 166
+V ++DG V G V+ ++ AER +LN + +SGIAT T A D
Sbjct: 74 DGYEVLDRVEDGARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAVA 133
Query: 167 --PATILETRKTAPTLRLLDKWAV 188
A I +TRKT P LR L K+AV
Sbjct: 134 GTKAKIRDTRKTLPGLRALQKYAV 157
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 288
Score = 103 bits (260), Expect = 3e-27
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 58 LAEDAGDRGDVTCMATIPLDMEV-EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 116
L ED G RGD T + D +A ++AKE G+IAG+ +A +F +DP + +
Sbjct: 21 LREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPLVA 79
Query: 117 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR----AMADLAHPATILE 172
+G G ++ G ++++ ERV LN R+SGIATLTR +ADL P +++
Sbjct: 80 EGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKIADL--PTQLVD 137
Query: 173 TRKTAPTLRLLDKWAV 188
TRKT P LRLL+K+A
Sbjct: 138 TRKTTPGLRLLEKYAT 153
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 99.0 bits (247), Expect = 2e-25
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGI----ALAEMIFHE 104
++K ++ AL ED G RGD+ D + A +AK +G+ +G L EM
Sbjct: 2 EIKDFLEAALKEDLG-RGDLFERLLEK-DFKATAKIIAKSEGVFSGEKYALELLEMT--- 56
Query: 105 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL 164
++ +++KDG+ KG ++ G ++ ER +LN +Q SGIATLT +
Sbjct: 57 ---GIECVFTIKDGERFKKGDILMEIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEA 113
Query: 165 A--HPATILETRKTAPTLRLLDKWAV 188
H +L+TRKT P LR+ +K++V
Sbjct: 114 LESHKVKLLDTRKTRPLLRIFEKYSV 139
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 95.8 bits (239), Expect = 2e-24
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 67 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGD 119
D+ + I P D A F A+ED G++AG+ A + + P V ++ +G
Sbjct: 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGT 60
Query: 120 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRK 175
V G + G A +++ ERV+LN +QR+SGIAT T + A TRK
Sbjct: 61 VVEPGEPLLTIEGPARELLLLERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRK 120
Query: 176 TAPTLRLLDKWAV 188
T P LRLL+K+AV
Sbjct: 121 TTPGLRLLEKYAV 133
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 94.0 bits (234), Expect = 2e-23
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 54 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 113
V A+AED G GD T +P A + +E+ ++ G+ + + VDPS++V W
Sbjct: 29 VADAIAEDVGS-GDQTGR-LVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTW 86
Query: 114 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL--AHPATIL 171
++GD + ++ G A +++ AER LNF+Q +SG+A+ TR D A IL
Sbjct: 87 RYREGDRMTADSTVCELEGPARALLTAERNALNFLQLLSGVASATRRYVDRIAGTRARIL 146
Query: 172 ETRKTAPTLRLLDKWAV 188
+TRKT P LRL K+AV
Sbjct: 147 DTRKTLPGLRLAQKYAV 163
>gnl|CDD|235831 PRK06559, PRK06559, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 290
Score = 87.0 bits (215), Expect = 7e-21
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 48 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDP 107
+ + +K AL ED D + A + + AKE G++AG+ + + +F D
Sbjct: 11 FQIDDTLKAALREDVHSE-DYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDA 69
Query: 108 SLKVE--WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 165
+ + KDGD + G ++ G S++ ERV LNF+Q +SGIA++T A +
Sbjct: 70 EVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEAL 129
Query: 166 HPATI--LETRKTAPTLRLLDKWAV 188
I +TRKT P LRL +K+AV
Sbjct: 130 GDDRIKVFDTRKTTPNLRLFEKYAV 154
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 84.4 bits (209), Expect = 6e-20
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 49 DLKGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 105
D+ V AL ED G D T +P D A + +EDG+ G E +F ++
Sbjct: 22 DIPAAVAQALREDLGGTVDANNDITAQLLPADSRSHATIITREDGVFCGKRWVEEVFIQL 81
Query: 106 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-L 164
+ +EW + DGD + +++G A ++ ER LNF+Q +SG+AT R + L
Sbjct: 82 GDDVTIEWHVDDGDVITANQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELL 141
Query: 165 AHPAT-ILETRKTAPTLRLLDKWAV 188
A T +L+TRKT P LR K+AV
Sbjct: 142 AGTNTQLLDTRKTLPGLRSALKYAV 166
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.
Length = 284
Score = 55.5 bits (134), Expect = 1e-09
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 58 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 117
L ED GD+T A F ++ G ++GI++A + + L ++ ++ D
Sbjct: 13 LLEDI-QGGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSD 69
Query: 118 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILET 173
G + G + G A ++ + V N ++ G++ M L I T
Sbjct: 70 GSQANAGQRLISAQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDGNIACT 129
Query: 174 RKTAPTLRLLDKWAV 188
RK P RLL AV
Sbjct: 130 RKAIPGTRLLATQAV 144
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide.
Length = 272
Score = 53.5 bits (129), Expect = 8e-09
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 58 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 117
L EDA GD+T A + + F A++ G++ G A I + L+V+ +
Sbjct: 8 LLEDA-PYGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAAS 64
Query: 118 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA---HPAT-ILET 173
G V G + G A ++ + +V ++ SGIAT T M A +P + T
Sbjct: 65 GSRVAAGAVLLEAEGPAAALHLGWKVAQTLLEWASGIATATAEMVAAARAVNPDIVVATT 124
Query: 174 RKTAPTLRLL 183
RK P R L
Sbjct: 125 RKAFPGTRKL 134
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The
gene modD for a member of this family is found with
molybdenum transport genes modABC in Rhodobacter
capsulatus. However, disruption of modD causes only a
4-fold (rather than 500-fold for modA, modB, modC)
change in the external molybdenum concentration required
to suppress an alternative nitrogenase. ModD proteins
are highly similar to nicotinate-nucleotide
pyrophosphorylase (also called quinolinate
phosphoribosyltransferase). The function unknown
[Unknown function, General].
Length = 277
Score = 51.8 bits (124), Expect = 3e-08
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 58 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 117
L ED G GD+T A D F A+++GI++G++ A + ++ +++++
Sbjct: 12 LLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPS 68
Query: 118 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA---HPATILE-T 173
G G + G A + + + ++ G+AT T M LA P ++ T
Sbjct: 69 GSRALAGTLLLEAKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKISPMAVVACT 128
Query: 174 RKTAPTLRLLDKWAV 188
RK P R L AV
Sbjct: 129 RKAIPLTRPLAVKAV 143
>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase,
C-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
C-terminal domain has a 7 beta-stranded TIM barrel-like
fold.
Length = 169
Score = 48.1 bits (115), Expect = 2e-07
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 154 IATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 188
IAT TR M + A I +TRKT P LRLL+K+AV
Sbjct: 1 IATATRRMVEAARGTKVRIADTRKTTPGLRLLEKYAV 37
>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
Length = 390
Score = 29.4 bits (66), Expect = 1.3
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 40 IKLPSHPTY---DLKGVVKLALAEDAGDRGDVTCMATI---PLDMEVE------AHFLAK 87
++ PS+P D++GVVKLA A D T + + PLD+ + FLA
Sbjct: 144 VETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAG 203
Query: 88 EDGIIAGIA 96
++AG+A
Sbjct: 204 HSDVLAGLA 212
>gnl|CDD|151471 pfam11024, DGF-1_4, Dispersed gene family protein 1 of Trypanosoma
cruzi region 4. This protein is likely to be highly
expressed, and is expressed from the sub-telomeric
region. However, the function is not known. Other
domains on this protein include DGF-1_N, DGF-1_2, and
DGF-1_5. This domain is just downstream from the
C-terminus, but not the C-terminus of proteins, also
annotated as being DGF-1, that constitute family
DGF-1_C.
Length = 75
Score = 26.0 bits (57), Expect = 3.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 158 TRAMADLAHPATILETRKTAPT 179
T M L+H AT+ ETR PT
Sbjct: 7 TPGMPLLSHTATLTETRSLTPT 28
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 27.3 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 85 LAKEDGIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 130
A EDG + G + LA+ I E+ LKVE+ D + L+ GK+
Sbjct: 15 FADEDGELTGFDVDLAKAIAKELG--LKVEFVEVSFDSLLTALKSGKI 60
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 27.5 bits (61), Expect = 5.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 111 VEWSLKDGDHVHKGLQFGKVS 131
+ + K+GDHV KG + G S
Sbjct: 565 ITFVKKEGDHVKKGDELGYFS 585
>gnl|CDD|232861 TIGR00181, pepF, oligoendopeptidase F. This family represents the
oligoendopeptidase F clade of the family of larger M3 or
thimet (for thiol-dependent metallopeptidase)
oligopeptidase family. Lactococcus lactis PepF
hydrolyzed peptides of 7 and 17 amino acids with fairly
broad specificity. The homolog of lactococcal PepF in
group B Streptococcus was named PepB (PMID:8757883),
with the name difference reflecting a difference in
species of origin rather activity; substrate profiles
were quite similar. Differences in substrate specificity
should be expected in other species. The gene is
duplicated in Lactococcus lactis on the plasmid that
bears it. A shortened second copy is found in Bacillus
subtilis [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 591
Score = 27.3 bits (61), Expect = 6.2
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 90 GIIAGIALAEMIFHEVDP 107
G +A AL E I E
Sbjct: 523 GQVAATALYEKIKEEGKG 540
>gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase.
Length = 153
Score = 26.5 bits (58), Expect = 6.9
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 43 PSHPTYDLKGVVKLALAED 61
P ++ +G++++ LAE+
Sbjct: 35 PFDLLHNPQGIIQMGLAEN 53
>gnl|CDD|218197 pfam04661, Pox_I3, Poxvirus I3 ssDNA-binding protein.
Length = 263
Score = 27.0 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 75 PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 116
+ E+E LAK D +A L ++F+ KV ++LK
Sbjct: 164 SISRELEN--LAKRDPQMAKAILVPIVFYRNGNECKVTFALK 203
>gnl|CDD|235365 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR
uracil phosphoribosyltransferase; Provisional.
Length = 176
Score = 26.2 bits (59), Expect = 7.8
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 148 MQRMSGI--ATLTRAMADLAHPATILETRKTAPTLRLL 183
M + + L RA+ +AH I+E K L L+
Sbjct: 1 MMKKEILDAEALRRALTRIAHE--IIERNKGLDNLVLV 36
>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown].
Length = 552
Score = 26.6 bits (59), Expect = 8.5
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 4 ILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAI 40
+L I +L + + N+ +V +P I
Sbjct: 416 LLVICSLAYSLVYLNADLLVWWRNGPSVSLHATTPKI 452
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.401
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,671,714
Number of extensions: 909607
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 698
Number of HSP's successfully gapped: 41
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)