RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029760
(188 letters)
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 188 bits (480), Expect = 2e-60
Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 43 PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF 102
+ L+ ++ L ED G GD+T + +P D+E EA LAKE G++AG+ +AE +F
Sbjct: 7 EALWQGGLEEALRAWLREDLGQ-GDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVF 65
Query: 103 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMA 162
DP + +G V +G + +V G I+ ER+ LN +QR+SGIATLTRA
Sbjct: 66 ALADPRTAFTPLVAEGARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYV 125
Query: 163 D-LAH-PATILETRKTAPTLRLLDKWAV 188
+ LA A IL+TRKT P LR L+K+AV
Sbjct: 126 EALAGTKAQILDTRKTTPGLRALEKYAV 153
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 186 bits (476), Expect = 1e-59
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 41 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEM 100
++ P + +V+ +LAED GD+T A + D++ A + +E+ I+ G A
Sbjct: 10 QINKVPNDIVTRLVRESLAEDIAT-GDIT--AQLAEDIDTTAFCITREEMILCGQDFANE 66
Query: 101 IFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRA 160
+ +++D ++++ W D V + ++ G SI+ AER +LNF+Q +SG AT+T
Sbjct: 67 VINQLDKNIQITWLYSDAQKVPANARIFELKGNVRSILTAERTILNFIQMLSGTATVTNK 126
Query: 161 MAD-LAH-PATILETRKTAPTLRLLDKWAV 188
+ ++ +L+TRKT P RL K+AV
Sbjct: 127 LVKLISQYKTKLLDTRKTIPGFRLAQKYAV 156
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 186 bits (474), Expect = 3e-59
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 43 PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF 102
P ++ AL ED GD+GD+T + + + +V +E+ ++ GI + E +F
Sbjct: 19 PGSMKISFSEIIHNALKEDLGDKGDITTNSILI-NEKVNFAINTRENLVVCGIPILEEVF 77
Query: 103 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMA 162
+ +K E KDGD K A ++ ERV+LNF+Q SGIA++TR
Sbjct: 78 NMNKEHVKYEIHKKDGDITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFV 137
Query: 163 D-LAH-PATILETRKTAPTLRLLDKWAV 188
D ++ I TRKT P LR+LDK++V
Sbjct: 138 DEVSGTKVKIRSTRKTTPGLRMLDKYSV 165
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 185 bits (472), Expect = 6e-59
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 33 PGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGII 92
P F + + + + V ALAED G GD T +P A + +ED ++
Sbjct: 12 PLFADISREYGAAFDAAIARNVADALAEDVG-SGDQTG-RLVPDGAPRRARVIVREDAVL 69
Query: 93 AGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMS 152
G+ + + VDPS++V+W ++GD + ++ G A +++ AER LNF+Q +S
Sbjct: 70 CGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTVCELRGPARALLTAERNALNFLQLLS 129
Query: 153 GIATLTRAMAD-LAH-PATILETRKTAPTLRLLDKWAV 188
G+A+ TR D +A A IL+TRKT P LRL K+AV
Sbjct: 130 GVASATRQYVDRIADTRARILDTRKTLPGLRLAQKYAV 167
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 184 bits (469), Expect = 9e-59
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 42 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 101
L + + L ED DVT +AT+P A + +E G++AG+ +A +
Sbjct: 2 LSDWELAAARAAIARGLDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLT 61
Query: 102 FHEVDPSLKVE--WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR 159
+EV + ++DG V G + + ++ AER +LN + +SGIAT T
Sbjct: 62 LNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATA 121
Query: 160 AMAD-LAH-PATILETRKTAPTLRLLDKWAV 188
A D + A I +TRKT P LR L K+AV
Sbjct: 122 AWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 152
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 178 bits (455), Expect = 2e-56
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 42 LPSHPTYDLKGVVKLALAEDAGD---RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALA 98
L D+ V AL ED G G+ +P D + A + +EDG+ G
Sbjct: 14 LLERINLDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWV 73
Query: 99 EMIFHEV-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATL 157
E +F ++ +++ W + DGD +H ++ G A ++ ER LNF+Q +SG+A+
Sbjct: 74 EEVFIQLAGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSGVASE 133
Query: 158 TRAMAD-LAH-PATILETRKTAPTLRLLDKWAV 188
R LA +L+TRKT P LR K+AV
Sbjct: 134 VRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 166
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 178 bits (453), Expect = 6e-56
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 49 DLKGVVKLALAEDAGDR----GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 104
D+ V L ED G D+T + IP D A + +E G+ G A+ +F +
Sbjct: 45 DITRSVIDTLKEDLGGTLDPAADITA-SLIPADRISTATIITREAGVFCGQLWADEVFKQ 103
Query: 105 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD- 163
+ + +EW ++DGD + ++G A ++ ER +NF+Q +SG AT T
Sbjct: 104 LGGQVSIEWHVQDGDTLTPNQTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQE 163
Query: 164 LAH-PATILETRKTAPTLRLLDKWAV 188
L +L+TRKT P LR K+AV
Sbjct: 164 LKGTQCRLLDTRKTIPGLRSALKYAV 189
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 173 bits (442), Expect = 1e-54
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 49 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPS 108
+++ ++ AL ED G GD+ + D + A AK++G+ +G A +
Sbjct: 2 EIRTFLERALKEDLG-HGDLFE-RVLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGI- 58
Query: 109 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH- 166
+ ++KD + ++ G ++ ER +LN +Q SGIATLT + L
Sbjct: 59 -ECVQTIKDKERFKPKDALMEIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEALNSH 117
Query: 167 PATILETRKTAPTLRLLDKWAV 188
+L+TRKT P LR+ +K++V
Sbjct: 118 KVRLLDTRKTRPLLRIFEKYSV 139
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 168 bits (429), Expect = 1e-52
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 37 SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA-GI 95
S I H + ++ + ED G + D+ + AH L K + ++A GI
Sbjct: 3 SDKIHHHHHHMEKILDLLMSFVKEDEG-KLDLASFPLR--NTTAGAHLLLKTENVVASGI 59
Query: 96 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIA 155
++ M ++ +++++DG+++ G++ G + +++AER +LN + M +A
Sbjct: 60 EVSRMFLEKMGL--LSKFNVEDGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVA 117
Query: 156 TLTRAMADLAHPATILETRKTAPTLRLLDKWAV 188
T TR A+ A I TRK P L +L K AV
Sbjct: 118 TTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 150
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 164 bits (418), Expect = 8e-51
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 46 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 105
P L +V L ED + A + +A AK G++AG + IF ++
Sbjct: 13 PPVTLAALVDSWLREDCPG---LNYAALVSGAGPSQAALWAKSPGVLAGQPFFDAIFTQL 69
Query: 106 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 165
+ +V W L +G + + +V G AH +++ ERV LN + R SGIA+ A + A
Sbjct: 70 NC--QVSWFLPEGSKLVPVARVAEVRGPAHCLLLGERVALNTLARCSGIASAAAAAVEAA 127
Query: 166 H----PATILETRKTAPTLRLLDKWAV 188
+ TRKT P RL++K+ +
Sbjct: 128 RGAGWTGHVAGTRKTTPGFRLVEKYGL 154
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 163 bits (416), Expect = 1e-50
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 42 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 101
LP + + V L+ED D + EA+ K+DG++ G+ A+ +
Sbjct: 7 LPVNGA--WRQDVTNWLSEDVP-SFDFG--GYVVGSDLKEANLYCKQDGMLCGVPFAQEV 61
Query: 102 FHEVDPSLKVEWSLKDGDHVHKGLQFG------KVSGRAHSIVIAERVVLNFMQRMSGIA 155
F++ + +VEW K+G + K++G A +I++AER LN + R SGIA
Sbjct: 62 FNQCEL--QVEWLFKEGSFLEPSKNDSGKIVVAKITGPAKNILLAERTALNILSRSSGIA 119
Query: 156 TLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 188
T + + LA TI TRKT P LR L+K+++
Sbjct: 120 TASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSM 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 1e-06
Identities = 43/199 (21%), Positives = 60/199 (30%), Gaps = 83/199 (41%)
Query: 5 LSISTLVWPHLCTNSRQ--VV---------------KMSA-TGI---------RKPGFES 37
+ IS LV N + VV K A +G+ RK F +
Sbjct: 366 VEIS-LV------NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 38 ---PAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHF----LAK 87
P + P H L L + +D + +V+ A IP V F L
Sbjct: 419 RFLP-VASPFHSHL-LVPASDL-INKDL-VKNNVSFNAKDIQIP----VYDTFDGSDLRV 470
Query: 88 EDGIIAGIALAEMIFHEVDPSLKVEWSL---KDGDHVHKGLQFGKVSGRAHSIVIAERVV 144
G I+ + + I P V+W H+ L FG G A
Sbjct: 471 LSGSISE-RIVDCIIRL--P---VKWETTTQFKATHI---LDFG--PGGA---------- 509
Query: 145 LNFMQRMSGIATLTRAMAD 163
SG+ LT D
Sbjct: 510 -------SGLGVLTHRNKD 521
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 36.1 bits (84), Expect = 0.004
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 87 KEDGIIAGIA-LAEMIFHEVDPSLKVE-WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVV 144
G++ G+ +A+++ + V +++ +G H ++ G I E +
Sbjct: 57 WRWGVLVGVEEVAKLL-----EGIPVNVYAMPEGTIFHPYEPVLQIEGDYADFGIYETAL 111
Query: 145 LNFMQRMSGIATLTRAMADLAHPATILE 172
L + + SGIAT + A +
Sbjct: 112 LGMLSQASGIATAALRIKIAAKFKPVYS 139
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 34.6 bits (80), Expect = 0.011
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 78 MEVEAHFLAKEDGIIAGI--ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG------K 129
ME G+ L + +VD +++ +G + G +
Sbjct: 46 MEATVSGPLDTWINFTGLDEVLKLLEGLDVD-----LYAIPEGTILFPRDANGLPVPFIR 100
Query: 130 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE 172
V GR + E +L F+ + SGI+T + A +
Sbjct: 101 VEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFS 143
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 32.0 bits (73), Expect = 0.10
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 113 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE 172
S +GD V ++ G + E +LN + + IAT + + +LE
Sbjct: 100 RSALEGDLVFNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLE 159
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 27.9 bits (63), Expect = 2.2
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 48 YDLKGVVKLALAEDAGDRGDVTCMA--TIPLDMEVEAHFLAK-EDGIIAGIALAEMIFHE 104
YD +GV + +D + + ++ E+ A +A+ E G IA + EM F E
Sbjct: 144 YDGRGVFIIKNEKDLENAIKGETYLEEFVEIEKEL-AVMVARNEKGEIACYPVVEMYFDE 202
Query: 105 VD 106
Sbjct: 203 DA 204
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein;
1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Length = 375
Score = 26.0 bits (56), Expect = 9.3
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 102 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER--VVLNFMQRMSGIATLTR 159
FH V PSL L G +H G V ++ R + + G T R
Sbjct: 74 FHTVTPSLVFLCLLIPG--LHAAFVHGGVPRESYLSTPVTRGEQTVVKTAKFYGEKTTQR 131
Query: 160 AMADL 164
+ +L
Sbjct: 132 DLTEL 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.401
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,968,952
Number of extensions: 181925
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 25
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)