RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029760
(188 letters)
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 122
Score = 108 bits (272), Expect = 1e-31
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 48 YDLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 104
D+ V AL ED G D G+ +P D + A + +EDG+ G E +F +
Sbjct: 13 LDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQ 72
Query: 105 V-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153
+ +++ W + DGD +H ++ G A ++ ER LNF+Q +SG
Sbjct: 73 LAGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSG 122
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 115
Score = 108 bits (270), Expect = 2e-31
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 50 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 109
+ + L ED DVT +AT+P A + +E G++AG+ +A + +EV +
Sbjct: 10 ARAAIARGLDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTN 69
Query: 110 KV--EWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153
++DG V G + + ++ AER +LN + +SG
Sbjct: 70 GYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSG 115
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 103
Score = 82.7 bits (204), Expect = 1e-21
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 54 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAG-IALAEMIFHEVDPSLKVE 112
+ + ED G + D+ + AH L K + ++A I ++ M L +
Sbjct: 8 LMSFVKEDEG-KLDLASFPLR--NTTAGAHLLLKTENVVASGIEVSRMFLE--KMGLLSK 62
Query: 113 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMS 152
++++DG+++ G++ G + +++AER +LN + M
Sbjct: 63 FNVEDGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMF 102
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 47.0 bits (111), Expect = 1e-07
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 154 IATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 188
+AT TR A+ A I TRK P L +L K AV
Sbjct: 1 VATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 35
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 167
Score = 44.3 bits (104), Expect = 1e-06
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 154 IATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 188
+A+ R L +L+TRKT P LR K+AV
Sbjct: 1 VASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 37
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 42.8 bits (100), Expect = 4e-06
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 154 IATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 188
IAT T A D A I +TRKT P LR L K+AV
Sbjct: 1 IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 37
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 37.3 bits (86), Expect = 5e-04
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 150 RMSGIATLTRAMADLAHPATILE--TRKTAPTLRLLDKWAV 188
+ SGIAT + A + R P + + A
Sbjct: 1 QASGIATAALRIKIAAKFKPVYSFGIRHMHPAIAPMIDRAA 41
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 119
Score = 29.0 bits (65), Expect = 0.16
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 78 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG------KVS 131
ME G+ + +D L +++ +G + G +V
Sbjct: 40 MEATVSGPLDTWINFTGLDEVLKLLEGLDVDL---YAIPEGTILFPRDANGLPVPFIRVE 96
Query: 132 GRAHSIVIAERVVLNFMQRMSGI 154
GR + E +L F+ + SGI
Sbjct: 97 GRYCDFGMYETAILGFICQASGI 119
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus
[TaxId: 12455]}
Length = 343
Score = 26.1 bits (57), Expect = 2.6
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 102 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER 142
FH V PSL L G +H G V ++ R
Sbjct: 42 FHTVTPSLVFLCLLIPG--LHAAFVHGGVPRESYLSTPVTR 80
>d1r17a1 b.2.3.4 (A:276-424) Fibrinogen-binding adhesin SdrG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 149
Score = 24.8 bits (54), Expect = 4.7
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 108 SLKVEWSLKDGDHVHKGLQF 127
+L + + + D V G
Sbjct: 33 NLIYDVTFEVDDKVKSGDTM 52
>d2d4pa1 d.108.1.1 (A:1-130) Hypothetical protein TTHA1254 {Thermus
thermophilus [TaxId: 274]}
Length = 130
Score = 24.9 bits (54), Expect = 4.8
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 84 FLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 125
FLA+E G ALA+ ++ ++ V +GL
Sbjct: 38 FLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGL 79
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase
PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Length = 110
Score = 24.4 bits (53), Expect = 5.3
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 113 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 148
+++ +G H ++ G I E +L +
Sbjct: 74 YAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGML 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.401
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 690,230
Number of extensions: 30726
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 17
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)