Query 029764
Match_columns 188
No_of_seqs 175 out of 1895
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 8.6E-40 1.9E-44 241.8 19.9 179 2-187 27-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 3.7E-37 8E-42 233.3 22.1 186 2-187 61-246 (247)
3 PLN02476 O-methyltransferase 100.0 1.9E-36 4.1E-41 231.9 22.7 179 2-187 100-278 (278)
4 PLN02781 Probable caffeoyl-CoA 100.0 3.4E-36 7.3E-41 228.0 22.7 185 2-188 50-234 (234)
5 COG4122 Predicted O-methyltran 100.0 2.2E-36 4.8E-41 223.5 19.6 174 6-188 45-219 (219)
6 KOG1663 O-methyltransferase [S 100.0 3.1E-34 6.7E-39 209.8 19.3 184 1-187 54-237 (237)
7 PF12847 Methyltransf_18: Meth 99.8 4.4E-19 9.4E-24 119.7 9.8 104 20-131 1-111 (112)
8 COG2242 CobL Precorrin-6B meth 99.8 1E-17 2.2E-22 120.2 15.6 119 6-134 20-138 (187)
9 PRK04457 spermidine synthase; 99.8 5E-17 1.1E-21 125.2 17.7 115 9-130 55-176 (262)
10 PRK00377 cbiT cobalt-precorrin 99.7 7.7E-17 1.7E-21 119.5 14.2 110 17-132 37-146 (198)
11 TIGR02469 CbiT precorrin-6Y C5 99.7 6.3E-17 1.4E-21 110.8 12.7 116 7-130 6-121 (124)
12 PRK08287 cobalt-precorrin-6Y C 99.7 3E-16 6.5E-21 115.3 16.0 113 9-132 20-132 (187)
13 PRK13944 protein-L-isoaspartat 99.7 8.1E-17 1.8E-21 120.0 12.1 107 15-131 67-173 (205)
14 PLN03075 nicotianamine synthas 99.7 1.2E-16 2.7E-21 123.6 12.3 118 6-131 110-233 (296)
15 PRK00107 gidB 16S rRNA methylt 99.7 2.3E-16 5.1E-21 115.5 12.8 103 18-131 43-145 (187)
16 COG2226 UbiE Methylase involve 99.7 1.3E-16 2.8E-21 120.0 11.5 109 17-134 48-159 (238)
17 TIGR00138 gidB 16S rRNA methyl 99.7 1.5E-16 3.1E-21 116.3 11.4 103 17-130 39-141 (181)
18 PF01209 Ubie_methyltran: ubiE 99.7 8.7E-17 1.9E-21 121.7 10.1 112 15-134 42-156 (233)
19 PRK13942 protein-L-isoaspartat 99.7 1.8E-16 3.9E-21 118.7 11.7 115 5-130 61-175 (212)
20 COG2518 Pcm Protein-L-isoaspar 99.7 1.2E-16 2.6E-21 117.1 10.0 111 6-130 58-168 (209)
21 TIGR00080 pimt protein-L-isoas 99.7 2.3E-16 5E-21 118.4 11.8 113 7-130 64-176 (215)
22 PRK07402 precorrin-6B methylas 99.7 7.6E-16 1.6E-20 114.0 14.3 121 4-133 24-144 (196)
23 PF13847 Methyltransf_31: Meth 99.7 2.2E-16 4.9E-21 112.3 10.7 108 19-133 2-112 (152)
24 TIGR03533 L3_gln_methyl protei 99.7 3.8E-15 8.2E-20 116.1 16.5 118 4-130 101-250 (284)
25 PRK11036 putative S-adenosyl-L 99.7 1.2E-15 2.5E-20 117.4 13.3 103 19-130 43-148 (255)
26 PRK14901 16S rRNA methyltransf 99.7 2.8E-15 6.1E-20 123.4 16.0 160 7-187 239-431 (434)
27 PF01135 PCMT: Protein-L-isoas 99.7 1.7E-16 3.8E-21 118.0 8.0 116 3-130 56-171 (209)
28 PF05175 MTS: Methyltransferas 99.7 9.6E-16 2.1E-20 111.0 11.5 111 9-129 20-138 (170)
29 TIGR02752 MenG_heptapren 2-hep 99.7 2.2E-15 4.8E-20 114.2 12.5 109 16-132 41-152 (231)
30 COG2519 GCD14 tRNA(1-methylade 99.7 1.7E-15 3.6E-20 113.4 11.3 114 10-133 84-197 (256)
31 PRK14903 16S rRNA methyltransf 99.6 1.9E-14 4.1E-19 118.2 17.9 121 7-134 224-369 (431)
32 PRK00121 trmB tRNA (guanine-N( 99.6 2.3E-15 4.9E-20 111.9 11.3 105 20-130 40-155 (202)
33 PLN02233 ubiquinone biosynthes 99.6 2.6E-15 5.7E-20 115.8 11.6 111 17-134 70-185 (261)
34 PRK14902 16S rRNA methyltransf 99.6 9.8E-15 2.1E-19 120.5 15.4 122 6-134 236-382 (444)
35 PRK11805 N5-glutamine S-adenos 99.6 3.2E-14 7E-19 112.0 17.0 118 4-130 113-262 (307)
36 PF02353 CMAS: Mycolic acid cy 99.6 3.5E-15 7.6E-20 115.4 11.2 109 16-136 58-171 (273)
37 COG2230 Cfa Cyclopropane fatty 99.6 6.4E-15 1.4E-19 112.9 12.4 113 12-136 64-181 (283)
38 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.8E-14 3.8E-19 106.6 14.4 106 19-130 15-131 (194)
39 PF13578 Methyltransf_24: Meth 99.6 6.4E-16 1.4E-20 103.4 6.1 102 25-132 1-106 (106)
40 PF13659 Methyltransf_26: Meth 99.6 7.3E-15 1.6E-19 99.7 10.9 102 21-129 1-113 (117)
41 PF08704 GCD14: tRNA methyltra 99.6 5.3E-15 1.1E-19 112.3 10.9 114 10-130 30-145 (247)
42 TIGR00446 nop2p NOL1/NOP2/sun 99.6 7.3E-14 1.6E-18 107.9 17.4 118 9-134 60-202 (264)
43 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.6E-14 3.6E-19 110.6 13.6 106 19-133 55-166 (247)
44 COG2227 UbiG 2-polyprenyl-3-me 99.6 5.4E-15 1.2E-19 110.0 10.1 104 19-134 58-164 (243)
45 PF07279 DUF1442: Protein of u 99.6 4.3E-14 9.2E-19 103.4 14.5 157 4-186 25-186 (218)
46 TIGR00740 methyltransferase, p 99.6 3.4E-14 7.4E-19 108.3 14.6 106 20-134 53-164 (239)
47 TIGR00563 rsmB ribosomal RNA s 99.6 4.8E-14 1E-18 115.9 16.2 122 7-134 225-371 (426)
48 PRK14904 16S rRNA methyltransf 99.6 2.7E-14 5.9E-19 117.9 14.8 118 8-134 238-380 (445)
49 PLN02244 tocopherol O-methyltr 99.6 9E-15 1.9E-19 116.8 11.3 106 19-133 117-225 (340)
50 PRK15128 23S rRNA m(5)C1962 me 99.6 1.2E-13 2.5E-18 112.1 17.8 112 17-133 217-341 (396)
51 PRK00312 pcm protein-L-isoaspa 99.6 1.1E-14 2.3E-19 109.1 11.1 113 4-130 62-174 (212)
52 PRK10901 16S rRNA methyltransf 99.6 6E-14 1.3E-18 115.3 16.2 120 7-134 231-375 (427)
53 PLN02396 hexaprenyldihydroxybe 99.6 1.5E-14 3.2E-19 114.2 12.1 104 20-133 131-237 (322)
54 smart00828 PKS_MT Methyltransf 99.6 3.3E-14 7.1E-19 107.3 13.2 103 22-133 1-106 (224)
55 COG4123 Predicted O-methyltran 99.6 2E-14 4.4E-19 108.4 11.6 116 9-130 33-169 (248)
56 PRK00811 spermidine synthase; 99.6 4.2E-14 9.1E-19 110.2 13.1 106 18-130 74-190 (283)
57 PLN02366 spermidine synthase 99.6 2.7E-13 5.9E-18 106.5 17.3 108 18-131 89-206 (308)
58 PRK11207 tellurite resistance 99.6 2.5E-14 5.3E-19 106.0 10.7 102 17-130 27-133 (197)
59 PRK01581 speE spermidine synth 99.6 2.7E-13 5.9E-18 107.4 17.1 108 16-130 146-267 (374)
60 TIGR00406 prmA ribosomal prote 99.6 1.6E-13 3.5E-18 107.3 15.5 116 7-133 145-261 (288)
61 PRK11873 arsM arsenite S-adeno 99.6 2.9E-14 6.2E-19 110.7 11.2 113 16-136 73-188 (272)
62 TIGR00536 hemK_fam HemK family 99.6 5.9E-14 1.3E-18 109.6 12.7 118 5-131 95-244 (284)
63 COG1092 Predicted SAM-dependen 99.6 1.1E-13 2.4E-18 111.1 14.5 114 15-134 212-339 (393)
64 PRK00517 prmA ribosomal protei 99.6 6.2E-13 1.3E-17 102.0 18.1 110 7-133 105-215 (250)
65 PRK10909 rsmD 16S rRNA m(2)G96 99.6 2.9E-13 6.2E-18 100.1 15.4 112 11-131 44-159 (199)
66 TIGR00477 tehB tellurite resis 99.6 4.5E-14 9.7E-19 104.5 10.9 108 9-130 20-132 (195)
67 PRK13943 protein-L-isoaspartat 99.6 1.1E-13 2.4E-18 109.2 13.0 104 16-130 76-179 (322)
68 TIGR00537 hemK_rel_arch HemK-r 99.6 2.9E-13 6.2E-18 98.8 14.4 109 10-132 9-141 (179)
69 PRK15001 SAM-dependent 23S rib 99.5 6.3E-14 1.4E-18 112.6 11.6 101 21-130 229-339 (378)
70 PF08241 Methyltransf_11: Meth 99.5 2.3E-14 5E-19 93.2 7.5 92 25-129 1-95 (95)
71 PF13649 Methyltransf_25: Meth 99.5 3.9E-14 8.5E-19 93.8 8.6 93 24-125 1-101 (101)
72 PRK01683 trans-aconitate 2-met 99.5 5.1E-14 1.1E-18 108.5 10.3 98 18-130 29-129 (258)
73 TIGR00417 speE spermidine synt 99.5 7.2E-13 1.6E-17 102.7 16.3 106 18-130 70-185 (270)
74 PRK01544 bifunctional N5-gluta 99.5 9.5E-14 2.1E-18 116.0 12.0 101 21-130 139-268 (506)
75 PRK14103 trans-aconitate 2-met 99.5 4.9E-14 1.1E-18 108.4 9.6 96 18-130 27-125 (255)
76 TIGR02716 C20_methyl_CrtF C-20 99.5 1.4E-13 3E-18 108.6 12.3 109 16-135 145-258 (306)
77 PRK11783 rlmL 23S rRNA m(2)G24 99.5 2.5E-13 5.4E-18 117.6 14.7 111 15-133 533-658 (702)
78 TIGR03534 RF_mod_PrmC protein- 99.5 3.7E-13 8E-18 103.1 13.2 115 6-130 71-216 (251)
79 PRK04266 fibrillarin; Provisio 99.5 1.9E-13 4.1E-18 103.1 11.4 105 16-130 68-175 (226)
80 PF06325 PrmA: Ribosomal prote 99.5 7.7E-13 1.7E-17 103.0 14.9 116 6-134 146-262 (295)
81 PTZ00098 phosphoethanolamine N 99.5 1.3E-13 2.9E-18 106.4 10.5 114 8-134 41-159 (263)
82 COG2264 PrmA Ribosomal protein 99.5 9.7E-13 2.1E-17 101.8 15.0 118 6-133 147-265 (300)
83 PRK14968 putative methyltransf 99.5 5.4E-13 1.2E-17 97.7 12.5 110 10-130 13-147 (188)
84 COG4106 Tam Trans-aconitate me 99.5 3.6E-14 7.8E-19 103.6 6.0 98 18-130 28-128 (257)
85 PRK12335 tellurite resistance 99.5 2.8E-13 6.2E-18 105.9 11.5 100 17-129 117-221 (287)
86 PRK00216 ubiE ubiquinone/menaq 99.5 4.6E-13 1E-17 101.6 11.9 109 18-133 49-160 (239)
87 PRK08317 hypothetical protein; 99.5 6.2E-13 1.3E-17 100.8 12.6 113 14-135 13-128 (241)
88 PRK14966 unknown domain/N5-glu 99.5 6.2E-13 1.3E-17 107.3 13.0 118 4-130 234-380 (423)
89 TIGR03704 PrmC_rel_meth putati 99.5 1.1E-12 2.5E-17 100.5 13.9 115 6-130 68-215 (251)
90 PRK06922 hypothetical protein; 99.5 7.4E-13 1.6E-17 111.6 13.6 114 13-134 411-540 (677)
91 PLN02336 phosphoethanolamine N 99.5 2.7E-13 5.9E-18 113.0 11.1 115 8-134 255-372 (475)
92 PF03602 Cons_hypoth95: Conser 99.5 1.6E-12 3.4E-17 95.0 13.5 123 4-131 25-153 (183)
93 PF10672 Methyltrans_SAM: S-ad 99.5 1.5E-12 3.3E-17 100.8 14.1 114 14-133 117-240 (286)
94 PF05401 NodS: Nodulation prot 99.5 2.5E-13 5.4E-18 98.5 9.0 112 7-132 27-147 (201)
95 PRK14121 tRNA (guanine-N(7)-)- 99.5 9.8E-13 2.1E-17 105.5 13.2 103 20-129 122-233 (390)
96 PF03848 TehB: Tellurite resis 99.5 4.6E-13 9.9E-18 97.9 10.2 114 5-132 16-134 (192)
97 PRK09328 N5-glutamine S-adenos 99.5 5.8E-13 1.3E-17 103.4 11.3 116 5-130 90-237 (275)
98 TIGR01177 conserved hypothetic 99.5 6.4E-13 1.4E-17 105.8 11.8 115 5-130 167-293 (329)
99 TIGR03587 Pse_Me-ase pseudamin 99.5 1.2E-12 2.7E-17 97.3 12.6 106 15-137 38-148 (204)
100 TIGR00095 RNA methyltransferas 99.5 5.8E-12 1.3E-16 92.6 15.9 123 4-131 29-159 (189)
101 COG2890 HemK Methylase of poly 99.5 8.3E-13 1.8E-17 102.6 12.0 116 5-131 93-238 (280)
102 PRK14967 putative methyltransf 99.5 1.6E-12 3.5E-17 98.1 13.1 101 18-130 34-158 (223)
103 PRK15068 tRNA mo(5)U34 methylt 99.5 9.2E-13 2E-17 104.4 12.1 108 19-136 121-231 (322)
104 PLN02823 spermine synthase 99.5 1.1E-12 2.4E-17 104.1 12.5 106 18-130 101-219 (336)
105 COG0421 SpeE Spermidine syntha 99.5 5E-12 1.1E-16 97.8 15.5 107 18-131 74-190 (282)
106 PRK09489 rsmC 16S ribosomal RN 99.5 1E-12 2.2E-17 104.9 11.7 111 7-130 184-302 (342)
107 PF08242 Methyltransf_12: Meth 99.5 1.6E-14 3.4E-19 95.3 1.1 96 25-127 1-99 (99)
108 PRK10258 biotin biosynthesis p 99.4 6.3E-13 1.4E-17 102.0 9.9 98 19-132 41-141 (251)
109 PRK03522 rumB 23S rRNA methylu 99.4 4.6E-12 9.9E-17 100.3 14.9 103 19-131 172-274 (315)
110 TIGR02072 BioC biotin biosynth 99.4 1.3E-12 2.8E-17 99.1 11.1 101 20-133 34-137 (240)
111 COG2813 RsmC 16S RNA G1207 met 99.4 1.2E-12 2.7E-17 100.8 10.7 112 7-130 146-265 (300)
112 KOG1270 Methyltransferases [Co 99.4 2.5E-13 5.5E-18 101.9 6.2 100 22-134 91-198 (282)
113 PF04989 CmcI: Cephalosporin h 99.4 1.7E-12 3.7E-17 95.3 10.4 162 5-174 17-187 (206)
114 TIGR00452 methyltransferase, p 99.4 2.2E-12 4.8E-17 101.5 11.3 109 18-136 119-230 (314)
115 PRK05134 bifunctional 3-demeth 99.4 7.1E-12 1.5E-16 95.1 13.5 113 9-132 37-152 (233)
116 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 4.9E-12 1.1E-16 95.0 12.3 106 18-133 37-145 (223)
117 PRK03612 spermidine synthase; 99.4 3.1E-12 6.6E-17 107.5 12.3 107 18-131 295-415 (521)
118 TIGR02021 BchM-ChlM magnesium 99.4 7.7E-12 1.7E-16 94.1 12.9 100 18-130 53-157 (219)
119 PRK11705 cyclopropane fatty ac 99.4 4.6E-12 1E-16 102.6 12.3 102 17-134 164-270 (383)
120 KOG2904 Predicted methyltransf 99.4 3.8E-12 8.3E-17 96.1 10.7 121 4-131 126-285 (328)
121 PLN02490 MPBQ/MSBQ methyltrans 99.4 4E-12 8.6E-17 100.9 11.4 100 20-131 113-215 (340)
122 PF13489 Methyltransf_23: Meth 99.4 4.7E-12 1E-16 90.3 10.8 106 8-134 9-118 (161)
123 TIGR03840 TMPT_Se_Te thiopurin 99.4 4.2E-12 9.1E-17 95.0 10.4 105 20-133 34-154 (213)
124 KOG1540 Ubiquinone biosynthesi 99.4 6.1E-12 1.3E-16 94.2 10.8 105 20-131 100-214 (296)
125 TIGR02085 meth_trns_rumB 23S r 99.4 2.4E-11 5.3E-16 98.3 15.0 117 3-130 212-333 (374)
126 PTZ00146 fibrillarin; Provisio 99.4 9.1E-12 2E-16 96.3 11.6 107 17-130 129-236 (293)
127 PRK11088 rrmA 23S rRNA methylt 99.4 6.5E-12 1.4E-16 97.5 10.6 94 20-130 85-180 (272)
128 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.3E-11 5.1E-16 100.5 14.4 105 19-131 296-400 (443)
129 COG0742 N6-adenine-specific me 99.4 3.8E-11 8.3E-16 86.9 13.6 121 6-132 28-155 (187)
130 TIGR00479 rumA 23S rRNA (uraci 99.4 3.4E-11 7.3E-16 99.3 14.9 104 19-130 291-395 (431)
131 KOG4300 Predicted methyltransf 99.4 5.9E-12 1.3E-16 91.5 9.0 102 23-133 79-184 (252)
132 PRK13255 thiopurine S-methyltr 99.3 1.1E-11 2.3E-16 93.2 10.4 99 19-129 36-153 (218)
133 PF02390 Methyltransf_4: Putat 99.3 2.1E-11 4.6E-16 90.0 11.7 101 23-129 20-131 (195)
134 TIGR03438 probable methyltrans 99.3 3.6E-11 7.8E-16 94.6 13.6 110 19-130 62-176 (301)
135 COG0220 Predicted S-adenosylme 99.3 4.1E-11 8.8E-16 90.1 12.9 103 22-130 50-163 (227)
136 PRK07580 Mg-protoporphyrin IX 99.3 4.9E-11 1.1E-15 90.2 13.6 98 19-129 62-164 (230)
137 PLN02336 phosphoethanolamine N 99.3 1.8E-11 3.9E-16 102.1 12.0 105 19-134 36-145 (475)
138 TIGR01983 UbiG ubiquinone bios 99.3 5.5E-11 1.2E-15 89.6 13.5 103 20-132 45-150 (224)
139 PF01564 Spermine_synth: Sperm 99.3 1.9E-11 4.2E-16 93.4 11.0 107 18-131 74-191 (246)
140 PRK11188 rrmJ 23S rRNA methylt 99.3 2.2E-11 4.7E-16 91.0 11.1 100 18-130 49-164 (209)
141 PF02475 Met_10: Met-10+ like- 99.3 3E-11 6.4E-16 89.2 10.0 102 18-129 99-200 (200)
142 smart00650 rADc Ribosomal RNA 99.3 5.4E-11 1.2E-15 86.0 10.9 111 17-140 10-122 (169)
143 PRK11933 yebU rRNA (cytosine-C 99.3 1.3E-10 2.8E-15 96.0 14.0 119 9-134 100-245 (470)
144 TIGR00438 rrmJ cell division p 99.3 9.2E-11 2E-15 86.3 11.8 107 11-130 23-145 (188)
145 cd02440 AdoMet_MTases S-adenos 99.3 1.3E-10 2.8E-15 75.9 11.1 99 23-130 1-103 (107)
146 PRK04338 N(2),N(2)-dimethylgua 99.3 2.4E-10 5.2E-15 92.5 14.4 100 21-130 58-157 (382)
147 PF10294 Methyltransf_16: Puta 99.3 1.2E-10 2.6E-15 84.6 11.5 109 17-131 42-156 (173)
148 COG3963 Phospholipid N-methylt 99.2 2E-10 4.4E-15 80.9 11.2 120 2-129 30-154 (194)
149 PRK05031 tRNA (uracil-5-)-meth 99.2 4.6E-10 9.9E-15 90.5 14.9 120 4-130 187-319 (362)
150 smart00138 MeTrc Methyltransfe 99.2 5.2E-11 1.1E-15 92.0 9.0 105 20-131 99-242 (264)
151 PF06080 DUF938: Protein of un 99.2 9.3E-11 2E-15 86.1 9.7 131 4-135 7-145 (204)
152 PHA03411 putative methyltransf 99.2 5.2E-10 1.1E-14 85.8 13.9 97 19-130 63-182 (279)
153 KOG1271 Methyltransferases [Ge 99.2 5.8E-11 1.3E-15 84.8 8.0 119 8-134 48-184 (227)
154 PLN02672 methionine S-methyltr 99.2 2.7E-10 5.8E-15 101.6 14.0 120 5-131 99-278 (1082)
155 PRK06202 hypothetical protein; 99.2 5.5E-11 1.2E-15 90.2 8.4 105 17-134 57-169 (232)
156 PF08003 Methyltransf_9: Prote 99.2 1.9E-10 4E-15 88.9 11.2 111 18-138 113-226 (315)
157 TIGR00308 TRM1 tRNA(guanine-26 99.2 5E-10 1.1E-14 90.2 13.8 101 22-130 46-146 (374)
158 KOG2915 tRNA(1-methyladenosine 99.2 1.3E-10 2.8E-15 87.8 9.7 115 7-129 93-207 (314)
159 PRK05785 hypothetical protein; 99.2 1.4E-10 3.1E-15 87.6 10.1 89 19-125 50-141 (226)
160 COG0144 Sun tRNA and rRNA cyto 99.2 1.2E-09 2.6E-14 87.7 15.6 124 6-134 142-291 (355)
161 COG2265 TrmA SAM-dependent met 99.2 5.6E-10 1.2E-14 91.4 13.5 120 2-130 271-395 (432)
162 TIGR02143 trmA_only tRNA (urac 99.2 1.3E-09 2.9E-14 87.5 15.4 120 4-130 178-310 (353)
163 PF05724 TPMT: Thiopurine S-me 99.2 1.8E-10 4E-15 86.4 9.1 150 5-175 23-188 (218)
164 KOG1661 Protein-L-isoaspartate 99.2 1.3E-10 2.8E-15 84.7 7.9 119 2-130 63-192 (237)
165 PTZ00338 dimethyladenosine tra 99.2 1.5E-09 3.3E-14 85.0 14.5 90 6-107 22-111 (294)
166 PF05891 Methyltransf_PK: AdoM 99.2 9.4E-11 2E-15 86.5 7.2 138 20-175 55-199 (218)
167 PF09445 Methyltransf_15: RNA 99.2 1E-10 2.3E-15 83.3 7.2 77 22-105 1-77 (163)
168 PHA03412 putative methyltransf 99.2 6.3E-10 1.4E-14 83.6 11.0 112 4-131 35-163 (241)
169 COG2520 Predicted methyltransf 99.1 6.5E-10 1.4E-14 87.9 11.3 110 15-134 183-292 (341)
170 KOG2899 Predicted methyltransf 99.1 4E-10 8.7E-15 83.9 9.3 110 18-134 56-212 (288)
171 COG2263 Predicted RNA methylas 99.1 1E-09 2.3E-14 79.0 11.2 105 3-121 25-137 (198)
172 PLN02585 magnesium protoporphy 99.1 1.8E-09 4E-14 85.2 13.7 96 20-129 144-248 (315)
173 PF01170 UPF0020: Putative RNA 99.1 9.6E-10 2.1E-14 80.2 11.1 121 3-130 11-150 (179)
174 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.1 1E-08 2.2E-13 80.1 16.8 149 7-178 72-249 (283)
175 COG2521 Predicted archaeal met 99.1 1.1E-09 2.3E-14 81.3 10.1 104 18-129 132-243 (287)
176 PRK11727 23S rRNA mA1618 methy 99.1 1.5E-09 3.2E-14 85.6 11.7 83 20-106 114-198 (321)
177 COG1041 Predicted DNA modifica 99.1 8.1E-10 1.8E-14 86.8 10.0 118 3-131 180-310 (347)
178 PRK13256 thiopurine S-methyltr 99.1 2.3E-09 5.1E-14 80.5 11.7 108 20-134 43-166 (226)
179 PF02527 GidB: rRNA small subu 99.1 1.7E-09 3.8E-14 78.9 10.6 96 23-129 51-146 (184)
180 PF07021 MetW: Methionine bios 99.1 1.8E-09 3.9E-14 78.4 9.5 99 18-132 11-112 (193)
181 COG4976 Predicted methyltransf 99.1 3.5E-10 7.6E-15 83.6 5.9 144 21-187 126-286 (287)
182 PRK00536 speE spermidine synth 99.0 2.3E-09 5.1E-14 82.2 10.3 100 17-131 69-171 (262)
183 KOG3191 Predicted N6-DNA-methy 99.0 1.8E-08 4E-13 72.1 13.8 102 20-131 43-168 (209)
184 COG0357 GidB Predicted S-adeno 99.0 4.7E-09 1E-13 78.0 10.8 98 21-129 68-166 (215)
185 PF00891 Methyltransf_2: O-met 99.0 1.3E-09 2.7E-14 83.3 8.0 100 17-135 97-203 (241)
186 KOG2361 Predicted methyltransf 99.0 5.7E-10 1.2E-14 83.1 5.5 107 22-134 73-186 (264)
187 PRK14896 ksgA 16S ribosomal RN 99.0 6.4E-09 1.4E-13 80.2 11.6 88 5-107 14-101 (258)
188 KOG2730 Methylase [General fun 99.0 1.8E-09 3.9E-14 79.3 7.7 87 14-106 88-174 (263)
189 PRK00274 ksgA 16S ribosomal RN 99.0 1.6E-08 3.5E-13 78.6 13.4 101 5-119 27-127 (272)
190 PRK00050 16S rRNA m(4)C1402 me 99.0 6.8E-09 1.5E-13 81.0 10.0 83 19-107 18-100 (296)
191 PF12147 Methyltransf_20: Puta 98.9 4E-08 8.7E-13 75.4 13.4 122 12-137 127-255 (311)
192 TIGR02081 metW methionine bios 98.9 4.1E-09 8.9E-14 77.9 7.6 90 19-123 12-104 (194)
193 KOG3010 Methyltransferase [Gen 98.9 1.4E-09 3.1E-14 81.0 4.8 109 11-129 23-135 (261)
194 TIGR00755 ksgA dimethyladenosi 98.9 2.6E-08 5.7E-13 76.6 11.6 99 6-119 15-116 (253)
195 KOG0820 Ribosomal RNA adenine 98.9 1.8E-08 3.9E-13 76.4 10.1 92 4-107 42-133 (315)
196 PRK01544 bifunctional N5-gluta 98.9 3.6E-08 7.9E-13 82.8 12.2 104 20-130 347-461 (506)
197 KOG1499 Protein arginine N-met 98.9 9.3E-09 2E-13 80.7 7.8 103 18-130 58-166 (346)
198 PF05185 PRMT5: PRMT5 arginine 98.8 2.7E-08 5.9E-13 82.1 10.1 102 21-130 187-296 (448)
199 PRK04148 hypothetical protein; 98.8 3.7E-08 8.1E-13 67.8 9.1 104 8-130 4-108 (134)
200 PF03059 NAS: Nicotianamine sy 98.8 2.4E-08 5.2E-13 77.0 8.8 105 20-131 120-230 (276)
201 PF05711 TylF: Macrocin-O-meth 98.8 5.7E-08 1.2E-12 73.9 10.1 137 18-179 72-240 (248)
202 PF04816 DUF633: Family of unk 98.8 1E-07 2.2E-12 70.8 10.8 99 24-130 1-100 (205)
203 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.9E-08 1.3E-12 78.0 10.2 105 9-117 183-299 (352)
204 COG0030 KsgA Dimethyladenosine 98.8 3.2E-07 6.9E-12 70.1 13.4 102 15-129 25-129 (259)
205 KOG1541 Predicted protein carb 98.8 2.4E-08 5.1E-13 73.7 6.8 95 21-130 51-159 (270)
206 PF03291 Pox_MCEL: mRNA cappin 98.7 1E-07 2.2E-12 75.8 9.1 107 20-130 62-185 (331)
207 KOG1709 Guanidinoacetate methy 98.7 4.2E-07 9.2E-12 66.9 11.4 110 19-137 100-212 (271)
208 COG3510 CmcI Cephalosporin hyd 98.7 2.8E-07 6E-12 66.6 10.2 150 9-171 58-215 (237)
209 PLN02232 ubiquinone biosynthes 98.7 6.6E-08 1.4E-12 69.3 6.3 78 49-133 1-83 (160)
210 KOG3420 Predicted RNA methylas 98.6 1.2E-07 2.5E-12 65.6 6.6 94 2-106 26-123 (185)
211 PF02384 N6_Mtase: N-6 DNA Met 98.6 1.9E-07 4.1E-12 73.9 8.2 122 3-129 29-181 (311)
212 PRK10742 putative methyltransf 98.6 5.9E-07 1.3E-11 68.1 9.7 88 10-106 76-173 (250)
213 KOG2187 tRNA uracil-5-methyltr 98.6 3.4E-07 7.4E-12 75.1 9.0 122 3-130 362-489 (534)
214 TIGR00478 tly hemolysin TlyA f 98.6 1.4E-07 3.1E-12 71.1 6.3 93 19-129 74-169 (228)
215 COG4262 Predicted spermidine s 98.6 2.3E-06 5E-11 67.8 12.4 107 18-131 287-407 (508)
216 PF05219 DREV: DREV methyltran 98.5 5.5E-06 1.2E-10 63.0 13.1 132 20-173 94-236 (265)
217 KOG1975 mRNA cap methyltransfe 98.5 8E-07 1.7E-11 69.2 8.4 109 18-130 115-236 (389)
218 KOG1500 Protein arginine N-met 98.5 8.8E-07 1.9E-11 69.4 8.3 100 19-129 176-280 (517)
219 PF08123 DOT1: Histone methyla 98.5 2.3E-06 4.9E-11 63.7 10.1 118 9-134 32-161 (205)
220 PF02005 TRM: N2,N2-dimethylgu 98.5 2.2E-06 4.8E-11 69.4 10.8 107 20-133 49-156 (377)
221 TIGR00006 S-adenosyl-methyltra 98.4 5.1E-06 1.1E-10 65.2 11.7 85 18-107 18-102 (305)
222 PRK11783 rlmL 23S rRNA m(2)G24 98.4 3.1E-06 6.6E-11 74.0 11.0 95 7-106 176-312 (702)
223 TIGR02987 met_A_Alw26 type II 98.4 1.9E-06 4.2E-11 72.9 9.6 99 4-105 8-120 (524)
224 PF06962 rRNA_methylase: Putat 98.4 1.9E-06 4.2E-11 59.8 7.7 84 47-137 1-96 (140)
225 PF13679 Methyltransf_32: Meth 98.4 2.9E-06 6.2E-11 59.5 8.8 65 19-83 24-93 (141)
226 PF01739 CheR: CheR methyltran 98.4 1.4E-06 3E-11 64.4 7.3 105 20-131 31-175 (196)
227 COG0293 FtsJ 23S rRNA methylas 98.4 9.2E-06 2E-10 59.9 11.3 103 18-133 43-161 (205)
228 COG0116 Predicted N6-adenine-s 98.4 4.9E-06 1.1E-10 66.7 10.4 117 7-130 178-343 (381)
229 TIGR01444 fkbM_fam methyltrans 98.3 2E-06 4.4E-11 60.1 6.9 57 23-81 1-57 (143)
230 KOG1122 tRNA and rRNA cytosine 98.3 9.3E-06 2E-10 65.4 10.8 111 17-134 238-374 (460)
231 COG2384 Predicted SAM-dependen 98.3 2.7E-05 5.8E-10 57.8 12.1 111 12-130 7-119 (226)
232 PF01728 FtsJ: FtsJ-like methy 98.3 3.2E-06 6.9E-11 61.7 7.4 97 20-130 23-138 (181)
233 KOG1562 Spermidine synthase [A 98.3 1.5E-05 3.3E-10 61.4 11.1 142 17-178 118-270 (337)
234 KOG3178 Hydroxyindole-O-methyl 98.3 1E-05 2.3E-10 63.8 10.4 98 21-136 178-280 (342)
235 PRK10611 chemotaxis methyltran 98.3 1.4E-06 3E-11 68.0 5.3 105 20-130 115-261 (287)
236 PF00398 RrnaAD: Ribosomal RNA 98.3 5.5E-06 1.2E-10 64.1 8.5 124 6-139 16-142 (262)
237 PF01269 Fibrillarin: Fibrilla 98.3 1.3E-05 2.7E-10 59.7 9.7 106 18-130 71-177 (229)
238 COG1352 CheR Methylase of chem 98.3 5.6E-06 1.2E-10 63.9 8.2 103 21-130 97-240 (268)
239 COG4076 Predicted RNA methylas 98.2 3.7E-06 8E-11 60.8 6.4 99 22-133 34-137 (252)
240 PF09243 Rsm22: Mitochondrial 98.1 3.3E-05 7.1E-10 60.2 10.0 101 19-129 32-137 (274)
241 COG0275 Predicted S-adenosylme 98.1 9.7E-05 2.1E-09 57.4 11.7 86 18-107 21-106 (314)
242 PF05148 Methyltransf_8: Hypot 98.1 2.1E-05 4.5E-10 58.1 7.6 121 8-174 60-182 (219)
243 COG1867 TRM1 N2,N2-dimethylgua 98.1 6.4E-05 1.4E-09 59.8 10.8 104 21-133 53-156 (380)
244 TIGR03439 methyl_EasF probable 98.1 9.2E-05 2E-09 58.7 11.8 110 19-129 75-195 (319)
245 PF05971 Methyltransf_10: Prot 98.1 1.8E-05 3.8E-10 61.9 7.6 81 22-106 104-186 (299)
246 COG1889 NOP1 Fibrillarin-like 98.0 0.00014 3E-09 53.3 10.5 112 8-129 58-178 (231)
247 PF01795 Methyltransf_5: MraW 98.0 4.6E-05 1E-09 59.9 8.5 94 10-108 11-104 (310)
248 PF03141 Methyltransf_29: Puta 98.0 7.7E-06 1.7E-10 67.4 4.1 99 22-134 119-222 (506)
249 KOG3115 Methyltransferase-like 97.9 4.2E-05 9.1E-10 56.0 6.8 104 21-129 61-181 (249)
250 COG3897 Predicted methyltransf 97.9 3.5E-05 7.5E-10 56.2 6.2 97 18-129 77-176 (218)
251 KOG3201 Uncharacterized conser 97.9 0.00015 3.1E-09 51.4 8.8 107 18-130 27-139 (201)
252 PRK11760 putative 23S rRNA C24 97.9 0.00016 3.4E-09 57.5 9.4 87 19-124 210-296 (357)
253 KOG1253 tRNA methyltransferase 97.8 2.9E-05 6.3E-10 63.8 4.2 117 13-133 102-218 (525)
254 KOG2352 Predicted spermine/spe 97.7 7.2E-05 1.6E-09 61.5 6.0 112 21-134 296-419 (482)
255 PF01861 DUF43: Protein of unk 97.7 0.0038 8.3E-08 47.3 14.4 98 19-125 43-142 (243)
256 PF04672 Methyltransf_19: S-ad 97.7 0.00048 1E-08 53.0 9.4 118 16-134 64-193 (267)
257 PRK01747 mnmC bifunctional tRN 97.7 0.00062 1.3E-08 59.5 11.1 103 21-129 58-204 (662)
258 PHA01634 hypothetical protein 97.6 0.0003 6.6E-09 47.8 6.8 74 19-105 27-100 (156)
259 COG1189 Predicted rRNA methyla 97.6 0.00064 1.4E-08 51.2 9.2 99 18-129 77-176 (245)
260 COG0500 SmtA SAM-dependent met 97.6 0.0008 1.7E-08 46.5 9.4 105 24-135 52-159 (257)
261 KOG2940 Predicted methyltransf 97.6 8.7E-05 1.9E-09 55.5 4.2 97 22-130 74-173 (325)
262 PF07942 N2227: N2227-like pro 97.6 0.00089 1.9E-08 51.8 9.5 120 9-136 38-207 (270)
263 KOG1269 SAM-dependent methyltr 97.6 0.00013 2.9E-09 58.8 5.0 107 18-133 108-217 (364)
264 KOG4589 Cell division protein 97.5 0.0014 2.9E-08 47.7 9.0 104 18-136 67-187 (232)
265 KOG3045 Predicted RNA methylas 97.5 0.00052 1.1E-08 52.3 6.8 97 8-133 168-266 (325)
266 PF04445 SAM_MT: Putative SAM- 97.4 0.00034 7.3E-09 52.9 4.7 74 23-105 78-159 (234)
267 COG0286 HsdM Type I restrictio 97.3 0.0014 3.1E-08 55.1 8.7 131 4-136 170-334 (489)
268 COG1064 AdhP Zn-dependent alco 97.2 0.0043 9.4E-08 49.5 9.9 98 17-133 163-261 (339)
269 KOG0024 Sorbitol dehydrogenase 97.2 0.0059 1.3E-07 48.1 10.2 108 16-131 165-273 (354)
270 KOG2671 Putative RNA methylase 97.2 0.00074 1.6E-08 53.4 5.1 117 5-130 193-353 (421)
271 COG5459 Predicted rRNA methyla 97.2 0.00036 7.7E-09 55.4 3.2 109 18-131 111-225 (484)
272 KOG2198 tRNA cytosine-5-methyl 97.1 0.0028 6E-08 50.7 8.0 117 16-134 151-299 (375)
273 KOG4058 Uncharacterized conser 97.1 0.0033 7.1E-08 44.0 7.3 106 15-131 67-172 (199)
274 PF07091 FmrO: Ribosomal RNA m 97.1 0.0018 4E-08 49.2 6.5 75 19-104 104-178 (251)
275 KOG1596 Fibrillarin and relate 97.0 0.0039 8.4E-08 47.2 7.4 118 6-130 136-260 (317)
276 COG1063 Tdh Threonine dehydrog 97.0 0.0071 1.5E-07 48.8 9.4 104 19-134 167-272 (350)
277 PF12692 Methyltransf_17: S-ad 97.0 0.028 6.1E-07 39.3 10.7 112 11-134 17-137 (160)
278 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.0018 3.8E-08 49.8 4.7 112 20-134 56-202 (256)
279 COG3129 Predicted SAM-dependen 96.8 0.0071 1.5E-07 45.5 6.9 84 22-109 80-165 (292)
280 PF00107 ADH_zinc_N: Zinc-bind 96.8 0.0062 1.3E-07 41.5 6.3 92 30-134 1-92 (130)
281 PF11599 AviRa: RRNA methyltra 96.8 0.06 1.3E-06 40.2 11.5 118 10-131 38-214 (246)
282 PF03141 Methyltransf_29: Puta 96.7 0.0069 1.5E-07 50.4 7.3 120 20-178 365-492 (506)
283 KOG1501 Arginine N-methyltrans 96.7 0.0044 9.5E-08 50.7 5.9 59 23-83 69-127 (636)
284 PRK11524 putative methyltransf 96.7 0.0077 1.7E-07 47.2 7.0 56 9-67 195-252 (284)
285 COG4798 Predicted methyltransf 96.6 0.0023 5E-08 46.9 3.4 110 16-134 44-169 (238)
286 cd08283 FDH_like_1 Glutathione 96.6 0.04 8.6E-07 45.0 10.8 107 16-131 180-306 (386)
287 KOG2793 Putative N2,N2-dimethy 96.5 0.015 3.3E-07 44.4 7.6 101 20-130 86-198 (248)
288 PF01555 N6_N4_Mtase: DNA meth 96.4 0.011 2.5E-07 44.0 6.4 52 9-63 178-231 (231)
289 COG4301 Uncharacterized conser 96.4 0.14 3.1E-06 39.2 11.9 119 7-129 61-191 (321)
290 KOG1227 Putative methyltransfe 96.4 0.0015 3.2E-08 50.9 1.2 102 22-133 196-299 (351)
291 KOG3987 Uncharacterized conser 96.3 0.00064 1.4E-08 50.2 -1.2 95 19-133 111-209 (288)
292 PRK13699 putative methylase; P 96.2 0.02 4.4E-07 43.4 6.8 56 10-68 151-208 (227)
293 PF02254 TrkA_N: TrkA-N domain 96.1 0.036 7.7E-07 37.0 6.7 89 29-130 4-95 (116)
294 TIGR00027 mthyl_TIGR00027 meth 96.0 0.41 8.9E-06 37.1 13.1 110 21-133 82-199 (260)
295 PF11968 DUF3321: Putative met 96.0 0.013 2.8E-07 43.7 4.6 80 22-126 53-139 (219)
296 PRK11524 putative methyltransf 96.0 0.02 4.3E-07 44.9 5.8 53 73-130 8-79 (284)
297 cd08254 hydroxyacyl_CoA_DH 6-h 95.9 0.12 2.6E-06 40.9 10.1 99 18-130 163-262 (338)
298 PRK09880 L-idonate 5-dehydroge 95.9 0.091 2E-06 42.1 9.4 99 19-132 168-267 (343)
299 PRK09424 pntA NAD(P) transhydr 95.9 0.24 5.3E-06 42.0 12.1 110 18-136 162-290 (509)
300 PRK13699 putative methylase; P 95.8 0.021 4.5E-07 43.3 5.3 51 74-129 2-70 (227)
301 PF05430 Methyltransf_30: S-ad 95.8 0.027 5.9E-07 38.5 5.1 50 74-129 33-88 (124)
302 PLN03154 putative allyl alcoho 95.7 0.23 5.1E-06 39.9 11.1 101 17-131 155-258 (348)
303 cd08294 leukotriene_B4_DH_like 95.7 0.24 5.1E-06 39.1 11.0 100 16-130 139-240 (329)
304 COG0686 Ald Alanine dehydrogen 95.6 0.23 4.9E-06 39.4 10.1 95 21-129 168-266 (371)
305 PF04378 RsmJ: Ribosomal RNA s 95.5 0.17 3.7E-06 38.7 9.0 114 6-129 44-162 (245)
306 PF02636 Methyltransf_28: Puta 95.5 0.033 7.2E-07 42.8 5.3 47 21-67 19-72 (252)
307 KOG1099 SAM-dependent methyltr 95.4 0.068 1.5E-06 40.4 6.5 97 21-130 42-162 (294)
308 cd08281 liver_ADH_like1 Zinc-d 95.4 0.21 4.6E-06 40.4 10.0 101 18-132 189-291 (371)
309 cd08237 ribitol-5-phosphate_DH 95.4 0.22 4.8E-06 39.9 10.0 94 19-131 162-256 (341)
310 COG0604 Qor NADPH:quinone redu 95.4 0.26 5.7E-06 39.4 10.3 104 15-132 137-242 (326)
311 KOG0822 Protein kinase inhibit 95.4 0.038 8.2E-07 46.5 5.5 102 21-130 368-477 (649)
312 KOG2651 rRNA adenine N-6-methy 95.4 0.063 1.4E-06 43.4 6.6 52 9-62 142-193 (476)
313 TIGR03451 mycoS_dep_FDH mycoth 95.4 0.28 6E-06 39.5 10.5 103 17-132 173-277 (358)
314 cd05188 MDR Medium chain reduc 95.3 0.36 7.7E-06 36.6 10.4 99 19-131 133-232 (271)
315 PF03721 UDPG_MGDP_dh_N: UDP-g 95.2 0.7 1.5E-05 33.8 11.1 126 23-176 2-151 (185)
316 cd00315 Cyt_C5_DNA_methylase C 95.1 0.054 1.2E-06 42.2 5.5 69 23-105 2-70 (275)
317 COG1565 Uncharacterized conser 95.1 0.1 2.2E-06 42.0 7.0 48 22-69 79-133 (370)
318 cd08293 PTGR2 Prostaglandin re 95.0 0.48 1E-05 37.7 10.7 95 22-130 156-253 (345)
319 cd08239 THR_DH_like L-threonin 94.9 0.52 1.1E-05 37.5 10.7 101 17-131 160-262 (339)
320 cd08285 NADP_ADH NADP(H)-depen 94.8 0.7 1.5E-05 37.0 11.3 104 17-132 163-267 (351)
321 PF05050 Methyltransf_21: Meth 94.8 0.085 1.8E-06 37.2 5.4 43 26-68 1-48 (167)
322 COG2961 ComJ Protein involved 94.8 1.4 3E-05 33.8 13.7 115 5-129 74-193 (279)
323 TIGR02825 B4_12hDH leukotriene 94.7 0.89 1.9E-05 35.9 11.6 101 16-131 134-237 (325)
324 cd08295 double_bond_reductase_ 94.7 0.84 1.8E-05 36.3 11.5 101 16-130 147-250 (338)
325 TIGR00561 pntA NAD(P) transhyd 94.7 0.34 7.3E-06 41.2 9.3 102 19-129 162-282 (511)
326 PRK10309 galactitol-1-phosphat 94.6 0.64 1.4E-05 37.1 10.5 102 18-132 158-261 (347)
327 PF03686 UPF0146: Uncharacteri 94.5 0.34 7.4E-06 33.1 7.3 96 12-130 5-101 (127)
328 KOG2078 tRNA modification enzy 94.4 0.031 6.8E-07 45.7 2.4 66 18-86 247-313 (495)
329 TIGR00518 alaDH alanine dehydr 94.3 0.79 1.7E-05 37.4 10.5 104 20-137 166-273 (370)
330 PLN02740 Alcohol dehydrogenase 94.3 0.92 2E-05 36.9 10.9 102 16-131 194-300 (381)
331 COG1062 AdhC Zn-dependent alco 94.3 0.57 1.2E-05 37.5 9.2 108 16-136 181-290 (366)
332 PLN02827 Alcohol dehydrogenase 94.2 0.81 1.7E-05 37.3 10.5 102 17-131 190-295 (378)
333 TIGR03201 dearomat_had 6-hydro 94.2 0.96 2.1E-05 36.3 10.8 107 18-133 164-274 (349)
334 PF01210 NAD_Gly3P_dh_N: NAD-d 94.2 0.73 1.6E-05 32.7 9.0 94 24-129 2-101 (157)
335 KOG1331 Predicted methyltransf 94.2 0.043 9.4E-07 42.6 2.7 92 19-129 44-141 (293)
336 TIGR03366 HpnZ_proposed putati 94.1 1.8 4E-05 33.5 11.9 101 19-133 119-220 (280)
337 KOG0780 Signal recognition par 94.0 1.1 2.4E-05 36.7 10.3 136 21-176 101-248 (483)
338 KOG2360 Proliferation-associat 93.8 0.068 1.5E-06 43.2 3.2 87 13-105 206-292 (413)
339 KOG2798 Putative trehalase [Ca 93.7 1 2.2E-05 35.8 9.4 37 96-133 258-298 (369)
340 cd05278 FDH_like Formaldehyde 93.6 1 2.3E-05 35.7 10.0 102 17-130 164-266 (347)
341 TIGR02356 adenyl_thiF thiazole 93.5 1.8 4E-05 32.0 10.4 93 18-117 18-131 (202)
342 TIGR02822 adh_fam_2 zinc-bindi 93.5 1.2 2.6E-05 35.4 10.1 93 17-132 162-255 (329)
343 cd08261 Zn_ADH7 Alcohol dehydr 93.4 1.6 3.5E-05 34.5 10.8 102 16-130 155-257 (337)
344 TIGR02818 adh_III_F_hyde S-(hy 93.4 2 4.4E-05 34.8 11.4 103 17-132 182-288 (368)
345 cd08230 glucose_DH Glucose deh 93.2 0.78 1.7E-05 36.8 8.7 96 19-132 171-270 (355)
346 PF03807 F420_oxidored: NADP o 93.2 0.37 8E-06 30.8 5.6 85 24-128 2-91 (96)
347 KOG1098 Putative SAM-dependent 93.1 0.99 2.1E-05 39.0 9.1 100 17-133 41-159 (780)
348 cd08238 sorbose_phosphate_red 93.1 0.95 2.1E-05 37.3 9.1 103 18-129 173-286 (410)
349 KOG3924 Putative protein methy 92.9 2.3 5E-05 34.8 10.5 113 16-135 188-312 (419)
350 COG3315 O-Methyltransferase in 92.8 2.7 5.8E-05 33.3 10.8 109 21-132 93-210 (297)
351 COG1568 Predicted methyltransf 92.8 1.7 3.6E-05 34.1 9.2 98 19-124 151-250 (354)
352 cd00401 AdoHcyase S-adenosyl-L 92.7 2 4.2E-05 35.7 10.3 88 19-131 200-289 (413)
353 PF01053 Cys_Met_Meta_PP: Cys/ 92.7 4.3 9.3E-05 33.4 12.3 124 4-134 53-181 (386)
354 PF10354 DUF2431: Domain of un 92.7 0.91 2E-05 32.7 7.4 100 27-130 3-124 (166)
355 cd08300 alcohol_DH_class_III c 92.7 3.4 7.4E-05 33.4 11.7 102 17-132 183-289 (368)
356 PRK12475 thiamine/molybdopteri 92.6 2.9 6.2E-05 33.7 11.0 82 18-107 21-126 (338)
357 COG1748 LYS9 Saccharopine dehy 92.4 0.79 1.7E-05 37.6 7.6 83 22-117 2-88 (389)
358 cd08291 ETR_like_1 2-enoyl thi 92.4 3 6.6E-05 32.9 10.9 98 20-131 142-242 (324)
359 cd08286 FDH_like_ADH2 formalde 92.4 3.4 7.3E-05 32.8 11.2 101 18-130 164-265 (345)
360 cd08233 butanediol_DH_like (2R 92.4 2.8 6.1E-05 33.5 10.8 103 17-132 169-273 (351)
361 PF00145 DNA_methylase: C-5 cy 92.3 0.69 1.5E-05 36.5 7.1 67 23-104 2-68 (335)
362 PRK09422 ethanol-active dehydr 92.3 4 8.8E-05 32.2 11.6 101 16-130 158-260 (338)
363 cd05285 sorbitol_DH Sorbitol d 92.1 3.1 6.7E-05 33.1 10.7 101 17-130 159-264 (343)
364 TIGR01202 bchC 2-desacetyl-2-h 92.0 1.1 2.3E-05 35.4 7.8 88 20-132 144-232 (308)
365 PLN02586 probable cinnamyl alc 92.0 4.4 9.5E-05 32.7 11.5 96 19-131 182-278 (360)
366 PF01262 AlaDh_PNT_C: Alanine 92.0 0.49 1.1E-05 34.0 5.4 44 18-63 17-61 (168)
367 TIGR02819 fdhA_non_GSH formald 92.0 3.1 6.6E-05 34.2 10.7 105 17-133 182-301 (393)
368 COG0677 WecC UDP-N-acetyl-D-ma 91.9 6.3 0.00014 32.5 12.8 106 22-137 10-134 (436)
369 PRK07502 cyclohexadienyl dehyd 91.9 1.5 3.4E-05 34.6 8.6 88 22-128 7-97 (307)
370 KOG0022 Alcohol dehydrogenase, 91.8 3.4 7.4E-05 33.0 10.0 107 15-134 187-297 (375)
371 PRK08114 cystathionine beta-ly 91.8 6.5 0.00014 32.4 12.5 128 4-138 60-193 (395)
372 cd08301 alcohol_DH_plants Plan 91.8 4.6 9.9E-05 32.6 11.4 104 16-132 183-290 (369)
373 cd08278 benzyl_alcohol_DH Benz 91.7 3 6.6E-05 33.6 10.3 101 17-130 183-284 (365)
374 cd00757 ThiF_MoeB_HesA_family 91.6 4.6 0.0001 30.5 10.6 83 18-107 18-121 (228)
375 PF06859 Bin3: Bicoid-interact 91.6 0.12 2.7E-06 34.3 1.7 40 97-136 1-49 (110)
376 PF05206 TRM13: Methyltransfer 91.5 0.99 2.1E-05 35.0 6.9 74 9-83 4-84 (259)
377 KOG2912 Predicted DNA methylas 91.4 0.44 9.5E-06 37.9 4.9 77 25-104 107-185 (419)
378 cd05213 NAD_bind_Glutamyl_tRNA 91.4 6.1 0.00013 31.4 11.9 97 19-133 176-274 (311)
379 COG1255 Uncharacterized protei 91.4 3.1 6.8E-05 28.0 9.0 89 12-121 5-94 (129)
380 cd08277 liver_alcohol_DH_like 91.3 5.1 0.00011 32.3 11.2 103 17-132 181-287 (365)
381 PF11312 DUF3115: Protein of u 91.3 0.68 1.5E-05 36.7 5.8 110 22-132 88-243 (315)
382 PF00899 ThiF: ThiF family; I 91.2 3.5 7.5E-05 28.2 9.1 81 21-109 2-104 (135)
383 KOG0821 Predicted ribosomal RN 91.2 0.42 9E-06 36.1 4.3 58 22-83 52-109 (326)
384 PF02153 PDH: Prephenate dehyd 91.1 1.1 2.5E-05 34.5 6.9 74 36-128 3-76 (258)
385 cd08263 Zn_ADH10 Alcohol dehyd 91.0 4.3 9.4E-05 32.7 10.6 99 19-130 186-286 (367)
386 cd01488 Uba3_RUB Ubiquitin act 91.0 3.6 7.8E-05 32.5 9.6 87 23-116 1-107 (291)
387 PRK05708 2-dehydropantoate 2-r 91.0 2 4.4E-05 33.9 8.4 98 22-129 3-102 (305)
388 KOG2352 Predicted spermine/spe 90.9 1.2 2.6E-05 37.4 7.1 96 23-129 51-159 (482)
389 PLN02353 probable UDP-glucose 90.8 9.2 0.0002 32.4 12.5 102 23-136 3-132 (473)
390 PRK05808 3-hydroxybutyryl-CoA 90.8 6.5 0.00014 30.6 11.1 93 22-129 4-116 (282)
391 PRK15001 SAM-dependent 23S rib 90.6 2.9 6.4E-05 34.3 9.1 105 11-131 35-142 (378)
392 PRK15182 Vi polysaccharide bio 90.6 6.8 0.00015 32.7 11.4 103 20-136 5-125 (425)
393 cd08296 CAD_like Cinnamyl alco 90.5 4.6 9.9E-05 32.0 10.2 98 17-130 160-258 (333)
394 PRK09496 trkA potassium transp 90.5 4.1 8.9E-05 33.9 10.2 94 21-127 231-327 (453)
395 TIGR00675 dcm DNA-methyltransf 90.4 0.94 2E-05 36.1 6.0 65 24-104 1-66 (315)
396 PRK12439 NAD(P)H-dependent gly 90.4 1.6 3.4E-05 35.2 7.4 96 20-128 6-108 (341)
397 PRK07688 thiamine/molybdopteri 90.4 6.8 0.00015 31.6 11.0 81 18-106 21-125 (339)
398 cd08232 idonate-5-DH L-idonate 90.3 2.8 6E-05 33.2 8.8 95 20-130 165-261 (339)
399 cd08265 Zn_ADH3 Alcohol dehydr 90.2 4.4 9.6E-05 32.9 10.0 101 18-130 201-306 (384)
400 cd05279 Zn_ADH1 Liver alcohol 90.2 6.4 0.00014 31.7 10.9 101 17-130 180-284 (365)
401 PRK03659 glutathione-regulated 90.2 1.6 3.4E-05 38.1 7.7 93 22-129 401-496 (601)
402 cd01484 E1-2_like Ubiquitin ac 90.2 6 0.00013 30.2 10.0 88 23-117 1-111 (234)
403 PRK08293 3-hydroxybutyryl-CoA 90.0 5.6 0.00012 31.1 10.1 96 22-129 4-118 (287)
404 cd05286 QOR2 Quinone oxidoredu 90.0 5.9 0.00013 30.5 10.3 98 16-130 132-234 (320)
405 PRK11064 wecC UDP-N-acetyl-D-m 90.0 10 0.00022 31.5 14.0 105 22-136 4-124 (415)
406 PRK07417 arogenate dehydrogena 89.9 3.3 7.2E-05 32.2 8.7 85 23-127 2-87 (279)
407 COG0270 Dcm Site-specific DNA 89.9 3 6.4E-05 33.4 8.5 99 21-133 3-118 (328)
408 cd05288 PGDH Prostaglandin deh 89.8 5.6 0.00012 31.2 10.1 99 18-130 143-243 (329)
409 PRK06130 3-hydroxybutyryl-CoA 89.7 6.7 0.00015 30.9 10.5 94 21-128 4-112 (311)
410 cd08231 MDR_TM0436_like Hypoth 89.7 6.7 0.00015 31.4 10.6 99 20-131 177-280 (361)
411 PRK10669 putative cation:proto 89.7 1.9 4.1E-05 37.2 7.8 92 23-129 419-513 (558)
412 TIGR00692 tdh L-threonine 3-de 89.7 8 0.00017 30.7 11.0 100 19-131 160-261 (340)
413 PRK07810 O-succinylhomoserine 89.5 8.5 0.00018 31.8 11.2 123 5-134 69-195 (403)
414 PF12242 Eno-Rase_NADH_b: NAD( 89.5 1.4 3.1E-05 27.3 4.9 38 18-55 36-74 (78)
415 PF10237 N6-adenineMlase: Prob 89.5 6.2 0.00013 28.3 11.6 110 5-130 8-122 (162)
416 cd08236 sugar_DH NAD(P)-depend 89.5 7.9 0.00017 30.7 10.8 101 17-131 156-258 (343)
417 PRK08762 molybdopterin biosynt 89.4 6.9 0.00015 32.0 10.5 82 19-107 133-235 (376)
418 PRK09496 trkA potassium transp 89.3 5.3 0.00011 33.2 10.0 93 23-129 2-97 (453)
419 cd08255 2-desacetyl-2-hydroxye 89.3 4.6 0.0001 30.9 9.1 93 17-129 94-188 (277)
420 PRK15057 UDP-glucose 6-dehydro 89.1 2.6 5.5E-05 34.7 7.8 100 24-136 3-122 (388)
421 cd05281 TDH Threonine dehydrog 89.0 9.6 0.00021 30.2 11.0 98 19-130 162-261 (341)
422 KOG0023 Alcohol dehydrogenase, 89.0 3.8 8.1E-05 32.8 8.1 102 18-133 179-281 (360)
423 PLN02256 arogenate dehydrogena 88.8 8.5 0.00018 30.5 10.3 94 12-126 27-122 (304)
424 cd08279 Zn_ADH_class_III Class 88.8 6.7 0.00015 31.5 10.0 98 17-130 179-281 (363)
425 COG0287 TyrA Prephenate dehydr 88.8 3.8 8.2E-05 32.1 8.2 89 22-128 4-95 (279)
426 PRK05967 cystathionine beta-ly 88.7 12 0.00027 30.8 12.6 122 5-133 63-188 (395)
427 cd08266 Zn_ADH_like1 Alcohol d 88.7 7.1 0.00015 30.5 10.0 99 18-130 164-264 (342)
428 PRK05690 molybdopterin biosynt 88.6 9.2 0.0002 29.3 10.9 83 18-107 29-132 (245)
429 PLN02514 cinnamyl-alcohol dehy 88.6 11 0.00023 30.4 11.1 97 19-132 179-276 (357)
430 cd01492 Aos1_SUMO Ubiquitin ac 88.5 8.2 0.00018 28.5 9.8 82 18-107 18-120 (197)
431 PRK08324 short chain dehydroge 88.4 11 0.00023 33.5 11.6 82 20-105 421-506 (681)
432 cd08297 CAD3 Cinnamyl alcohol 88.4 11 0.00023 29.9 10.8 101 17-130 162-264 (341)
433 PRK06249 2-dehydropantoate 2-r 88.3 2.6 5.7E-05 33.4 7.2 34 96-129 71-104 (313)
434 PF02558 ApbA: Ketopantoate re 88.3 6.6 0.00014 27.2 10.0 35 95-129 65-99 (151)
435 PF04072 LCM: Leucine carboxyl 88.2 7 0.00015 28.4 8.9 91 13-105 70-165 (183)
436 PF07015 VirC1: VirC1 protein; 88.2 2.5 5.5E-05 32.1 6.6 75 29-104 11-90 (231)
437 PRK12921 2-dehydropantoate 2-r 88.0 3.5 7.6E-05 32.3 7.7 34 96-129 67-100 (305)
438 PTZ00354 alcohol dehydrogenase 87.9 11 0.00023 29.6 10.5 99 18-130 138-239 (334)
439 PF08351 DUF1726: Domain of un 87.9 0.81 1.8E-05 29.5 3.3 76 95-171 9-89 (92)
440 PRK07671 cystathionine beta-ly 87.9 13 0.00027 30.5 11.1 122 5-134 49-174 (377)
441 PF07757 AdoMet_MTase: Predict 87.9 0.53 1.1E-05 31.3 2.4 33 20-55 58-90 (112)
442 PRK10083 putative oxidoreducta 87.9 10 0.00022 30.0 10.3 100 17-130 157-258 (339)
443 cd08244 MDR_enoyl_red Possible 87.7 11 0.00025 29.3 11.6 100 17-130 139-240 (324)
444 PTZ00357 methyltransferase; Pr 87.5 3.1 6.7E-05 36.8 7.4 104 23-126 703-830 (1072)
445 TIGR00497 hsdM type I restrict 87.5 5.8 0.00013 33.8 9.1 67 4-70 199-270 (501)
446 PRK05396 tdh L-threonine 3-deh 87.5 9.3 0.0002 30.3 10.0 100 20-131 163-263 (341)
447 PRK06522 2-dehydropantoate 2-r 87.4 7.9 0.00017 30.2 9.4 93 23-129 2-98 (304)
448 PRK07582 cystathionine gamma-l 87.4 11 0.00024 30.6 10.4 118 5-133 50-171 (366)
449 PRK08064 cystathionine beta-ly 87.3 15 0.00032 30.1 11.6 123 4-134 52-178 (390)
450 PRK05939 hypothetical protein; 87.2 15 0.00033 30.2 12.7 123 4-133 45-170 (397)
451 PRK08574 cystathionine gamma-s 87.2 12 0.00026 30.7 10.6 123 5-134 52-177 (385)
452 PRK08248 O-acetylhomoserine am 87.2 14 0.00031 30.8 11.1 123 5-134 63-189 (431)
453 PRK06940 short chain dehydroge 87.1 10 0.00022 29.2 9.8 80 22-105 3-84 (275)
454 PRK08306 dipicolinate synthase 87.1 12 0.00027 29.5 10.2 87 20-128 151-238 (296)
455 PRK03562 glutathione-regulated 87.1 3.3 7.2E-05 36.3 7.6 93 22-129 401-496 (621)
456 cd08260 Zn_ADH6 Alcohol dehydr 87.0 13 0.00027 29.6 10.5 99 18-130 163-263 (345)
457 PF11899 DUF3419: Protein of u 87.0 2.4 5.1E-05 34.8 6.3 51 11-64 26-76 (380)
458 PLN02494 adenosylhomocysteinas 86.7 7.7 0.00017 32.8 9.2 89 19-131 252-341 (477)
459 PRK08655 prephenate dehydrogen 86.7 5.5 0.00012 33.3 8.4 87 23-128 2-89 (437)
460 PRK07066 3-hydroxybutyryl-CoA 86.7 12 0.00027 29.9 10.1 94 21-128 7-116 (321)
461 COG2130 Putative NADP-dependen 86.7 12 0.00026 29.8 9.6 101 19-133 149-251 (340)
462 COG0541 Ffh Signal recognition 86.5 11 0.00024 31.5 9.7 135 20-175 99-246 (451)
463 COG0075 Serine-pyruvate aminot 86.5 10 0.00022 31.2 9.5 107 21-133 56-169 (383)
464 cd08243 quinone_oxidoreductase 86.4 13 0.00029 28.7 11.3 97 18-131 140-238 (320)
465 cd08235 iditol_2_DH_like L-idi 86.2 13 0.00028 29.4 10.1 99 17-131 162-265 (343)
466 cd08292 ETR_like_2 2-enoyl thi 86.1 14 0.00031 28.7 11.0 98 16-130 135-237 (324)
467 COG5379 BtaA S-adenosylmethion 86.1 2.8 6E-05 33.2 5.8 49 16-67 59-107 (414)
468 cd08234 threonine_DH_like L-th 85.8 10 0.00022 29.8 9.3 98 17-130 156-256 (334)
469 PF02737 3HCDH_N: 3-hydroxyacy 85.7 4.8 0.0001 29.2 6.9 94 23-131 1-114 (180)
470 KOG2920 Predicted methyltransf 85.7 0.71 1.5E-05 36.0 2.5 38 19-58 115-152 (282)
471 PRK10754 quinone oxidoreductas 85.4 16 0.00035 28.6 10.4 99 18-130 138-238 (327)
472 TIGR02817 adh_fam_1 zinc-bindi 85.3 14 0.00031 29.0 10.0 95 21-129 149-245 (336)
473 cd08276 MDR7 Medium chain dehy 85.2 16 0.00034 28.6 10.1 100 17-130 157-258 (336)
474 PF03269 DUF268: Caenorhabditi 85.2 9.4 0.0002 27.5 7.7 99 21-134 2-114 (177)
475 PRK06176 cystathionine gamma-s 85.2 18 0.00039 29.6 10.7 123 4-134 48-174 (380)
476 cd08240 6_hydroxyhexanoate_dh_ 85.2 17 0.00038 28.9 10.6 95 20-130 175-273 (350)
477 PF11899 DUF3419: Protein of u 85.1 3.8 8.2E-05 33.6 6.6 58 72-134 275-337 (380)
478 PRK06223 malate dehydrogenase; 85.1 17 0.00036 28.7 10.2 37 22-59 3-40 (307)
479 KOG1197 Predicted quinone oxid 85.1 14 0.0003 28.9 9.0 99 17-129 143-243 (336)
480 PRK12491 pyrroline-5-carboxyla 85.0 8.8 0.00019 29.9 8.4 86 23-128 4-94 (272)
481 PRK09028 cystathionine beta-ly 85.0 20 0.00044 29.5 12.2 124 6-136 61-188 (394)
482 PRK07877 hypothetical protein; 84.8 15 0.00032 33.0 10.4 82 18-107 104-206 (722)
483 cd08290 ETR 2-enoyl thioester 84.8 17 0.00038 28.6 11.2 103 17-130 143-250 (341)
484 PRK08507 prephenate dehydrogen 84.7 3.8 8.2E-05 31.8 6.3 84 23-128 2-88 (275)
485 TIGR02355 moeB molybdopterin s 84.7 16 0.00034 28.0 10.8 92 18-116 21-133 (240)
486 PRK05786 fabG 3-ketoacyl-(acyl 84.7 14 0.0003 27.4 12.1 82 20-105 4-89 (238)
487 KOG0053 Cystathionine beta-lya 84.6 22 0.00047 29.5 12.0 125 5-136 76-204 (409)
488 cd08250 Mgc45594_like Mgc45594 84.5 16 0.00035 28.6 10.0 98 17-129 136-235 (329)
489 PRK07680 late competence prote 84.5 5.6 0.00012 30.8 7.1 87 23-128 2-93 (273)
490 PRK05225 ketol-acid reductoiso 84.5 8.5 0.00019 32.4 8.3 93 17-131 32-131 (487)
491 TIGR01470 cysG_Nterm siroheme 84.3 8.9 0.00019 28.5 7.8 71 19-106 7-78 (205)
492 cd08241 QOR1 Quinone oxidoredu 84.1 17 0.00037 28.0 10.9 100 17-130 136-237 (323)
493 PRK07063 short chain dehydroge 84.1 16 0.00034 27.7 9.4 85 20-105 6-94 (260)
494 COG0569 TrkA K+ transport syst 83.9 9.5 0.00021 28.8 7.9 73 23-109 2-78 (225)
495 PRK06914 short chain dehydroge 83.9 17 0.00037 27.8 11.4 81 21-105 3-89 (280)
496 KOG0781 Signal recognition par 83.8 9.7 0.00021 32.3 8.3 59 95-168 464-527 (587)
497 PLN02662 cinnamyl-alcohol dehy 83.6 11 0.00025 29.4 8.7 79 20-105 3-84 (322)
498 COG1893 ApbA Ketopantoate redu 83.6 3.8 8.3E-05 32.5 5.9 35 95-129 65-99 (307)
499 PF01408 GFO_IDH_MocA: Oxidore 83.4 10 0.00022 24.9 9.7 92 23-133 2-95 (120)
500 PRK06234 methionine gamma-lyas 83.3 24 0.00053 29.0 11.1 124 5-136 63-193 (400)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=8.6e-40 Score=241.84 Aligned_cols=179 Identities=45% Similarity=0.812 Sum_probs=160.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
|..+++++++|..+++..++++||||||++|++++++|+.++++++|+++|.+++.++.|++++++.|+.++++++.+|+
T Consensus 27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 67889999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 161 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
.+.++++.+.. ..++||+||+|+++.++..+++.+.++|++||+++++|++|+|.+..+....+ ....+++|+
T Consensus 107 ~~~l~~l~~~~-~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~------~~~~ir~f~ 179 (205)
T PF01596_consen 107 LEVLPELANDG-EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDP------KTVAIREFN 179 (205)
T ss_dssp HHHHHHHHHTT-TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSH------HHHHHHHHH
T ss_pred HhhHHHHHhcc-CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhh------hHHHHHHHH
Confidence 99999876541 13589999999999999999999999999999999999999999998843221 455599999
Q ss_pred HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764 162 RSLADDPRVQLSHVALGDGITICRRI 187 (188)
Q Consensus 162 ~~~~~~~~~~~~~lp~~~G~~~~~~~ 187 (188)
+++.++|+|+++++|+++|+++++||
T Consensus 180 ~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 180 EYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999996
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=3.7e-37 Score=233.27 Aligned_cols=186 Identities=57% Similarity=1.011 Sum_probs=163.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
|.++++++++|..+++..++++|||||+++|++++++|..++++++++++|.+++.++.|++++++.|+.++++++.+++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a 140 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence 56789999999999999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 161 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
.+.++++.......++||+||+|+++..+..+++.+.++|++||+++++|++|.|.+.++.....+.........+++|+
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn 220 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN 220 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHH
Confidence 99998875321112689999999999999999999999999999999999999999887743221111110234688999
Q ss_pred HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764 162 RSLADDPRVQLSHVALGDGITICRRI 187 (188)
Q Consensus 162 ~~~~~~~~~~~~~lp~~~G~~~~~~~ 187 (188)
+++.++|+|+++++|+|+|+++++|+
T Consensus 221 ~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 221 KALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 99999999999999999999999986
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=1.9e-36 Score=231.93 Aligned_cols=179 Identities=42% Similarity=0.722 Sum_probs=162.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
|..+++++++|..++...++++||||||++|++++++|..++++++++++|.+++.++.|++++++.|+.++++++.+|+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 57789999999999999999999999999999999999998878899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 161 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
.+.++.+..+ ...++||+||+|+++..+..+++.+.++|++||+++++|++|.|.+.++..... ...++++|+
T Consensus 180 ~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~------~t~~ir~fn 252 (278)
T PLN02476 180 AESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDA------KTISIRNFN 252 (278)
T ss_pred HHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCH------HHHHHHHHH
Confidence 9998876422 113689999999999999999999999999999999999999999987753221 456799999
Q ss_pred HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764 162 RSLADDPRVQLSHVALGDGITICRRI 187 (188)
Q Consensus 162 ~~~~~~~~~~~~~lp~~~G~~~~~~~ 187 (188)
+++.++|+++++++|+|+|+++++|+
T Consensus 253 ~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 253 KKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999985
No 4
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=3.4e-36 Score=227.98 Aligned_cols=185 Identities=60% Similarity=1.048 Sum_probs=166.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
|.++++++++|..++...++++|||+|||+|+++++++..++++++++++|.+++.++.|++++++.++.++++++.+|+
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 57789999999999999999999999999999999999998768899999999999999999999999998999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 161 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
.+.++.+... ...++||+||+|+.+..+..+++.+.++|+|||+++++|++|.|.+.++.....++.+. ....+++|+
T Consensus 130 ~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~ 207 (234)
T PLN02781 130 LSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFN 207 (234)
T ss_pred HHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHH
Confidence 9988776432 01368999999999999999999999999999999999999999998886543344444 567899999
Q ss_pred HHhhcCCCeEEEEeecCCceEEEEEcC
Q 029764 162 RSLADDPRVQLSHVALGDGITICRRIF 188 (188)
Q Consensus 162 ~~~~~~~~~~~~~lp~~~G~~~~~~~~ 188 (188)
+++.++|+++++++|+|+|+++++|++
T Consensus 208 ~~i~~~~~~~~~~lp~gdG~~i~~k~~ 234 (234)
T PLN02781 208 KLLASDPRVEISQISIGDGVTLCRRLV 234 (234)
T ss_pred HHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence 999999999999999999999999874
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=223.50 Aligned_cols=174 Identities=42% Similarity=0.716 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSV 84 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~ 84 (188)
++++++|.+++...++++|||||++.|+|++|||..++.++++++||.+++.++.|++++++.|+.+++..+. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 8999999999999999999999999999999999999978899999999999999999999999999999989 699998
Q ss_pred HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 164 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (188)
+.... .++||+||+|+++..+.++++.+.++|+|||+++++|++++|.+..+.. +..++ ....++.|++++
T Consensus 125 l~~~~-----~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~ 195 (219)
T COG4122 125 LSRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYL 195 (219)
T ss_pred HHhcc-----CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHH
Confidence 87621 5899999999999999999999999999999999999999998887753 22233 556699999999
Q ss_pred hcCCCeEEEEeecCCceEEEEEcC
Q 029764 165 ADDPRVQLSHVALGDGITICRRIF 188 (188)
Q Consensus 165 ~~~~~~~~~~lp~~~G~~~~~~~~ 188 (188)
.++|+++.+++|+|+|+++++|++
T Consensus 196 ~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 196 LEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred hhCcCceeEEEecCCceEEEeecC
Confidence 999999999999999999999974
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-34 Score=209.82 Aligned_cols=184 Identities=58% Similarity=0.975 Sum_probs=167.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764 1 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80 (188)
Q Consensus 1 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 80 (188)
+|.++++.+++++.+++..+++++||||..+|+|++.+|..+|++++|+++|++++.++.+.+..+..|...++++++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHH
Q 029764 81 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL 160 (188)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 160 (188)
+.+.++++.+. .+.++||++|+|+++.++..+.+++.+++|+||+|+++|++|+|.+..|+...+++.+. +..+ -.+
T Consensus 134 a~esLd~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-~r~~-~~~ 210 (237)
T KOG1663|consen 134 ALESLDELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-IREA-LNL 210 (237)
T ss_pred hhhhHHHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-hhhh-hhh
Confidence 99999888765 25679999999999999999999999999999999999999999888876655544443 2222 489
Q ss_pred HHHhhcCCCeEEEEeecCCceEEEEEc
Q 029764 161 NRSLADDPRVQLSHVALGDGITICRRI 187 (188)
Q Consensus 161 ~~~~~~~~~~~~~~lp~~~G~~~~~~~ 187 (188)
+..+..+|+++.+++|+|+|+++++|+
T Consensus 211 n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 211 NKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhHhccCcceeeEeeeccCceeeeccC
Confidence 999999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.80 E-value=4.4e-19 Score=119.69 Aligned_cols=104 Identities=22% Similarity=0.374 Sum_probs=87.2
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
|+.+|||+|||+|..+..+++..+ +.+++++|++|++++.+++++...+..++++++++|+ ...... .+.||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 567999999999999999999655 8899999999999999999997777788999999999 332222 46899
Q ss_pred EEEEeC-Ccc------chHHHHHHHHhccCcCeEEEEec
Q 029764 100 YAFVDA-DKD------NYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 100 ~i~id~-~~~------~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+|++.. ... ....+++.+.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999987 222 23567899999999999999864
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.79 E-value=1e-17 Score=120.22 Aligned_cols=119 Identities=26% Similarity=0.276 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
++.-.+.-..+...++.+++|||||+|..++.++...| .+++++||-++++++..++|++++++ ++++++.+++.+.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 33333434445677788999999999999999996555 89999999999999999999999995 57999999999988
Q ss_pred HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+.+ .++|.||+.+. ......++.++..|++||.+|.+-...
T Consensus 98 ~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 98 PDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred cCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 753 48999999988 788999999999999999999986553
No 9
>PRK04457 spermidine synthase; Provisional
Probab=99.77 E-value=5e-17 Score=125.24 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
..++..+....++++|||||||+|..+.+++...+ +.+++++|++|++++.|++++...+..++++++.+|+.+++...
T Consensus 55 ~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 55 RAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred HHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 33445555556788999999999999999999886 88999999999999999999876554568999999999887653
Q ss_pred hhcccCCCceeEEEEeCCccc-------hHHHHHHHHhccCcCeEEEEe
Q 029764 89 LKYSENEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.++||+|++|..... ..++++.+.+.|+|||+++++
T Consensus 134 ------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 ------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred ------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 468999999963221 368999999999999999996
No 10
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.74 E-value=7.7e-17 Score=119.52 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=94.1
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...++.+|||+|||+|..++.+++..++.++|+++|.++++++.++++++.+++.+++.++.+|..+.++.. .+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~ 110 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NE 110 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CC
Confidence 455778999999999999999988765468999999999999999999999886678999999987765543 36
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
.||.||+......+..+++.+.+.|+|||.++++..
T Consensus 111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 899999987666778899999999999999998543
No 11
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.74 E-value=6.3e-17 Score=110.80 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
+....+...+...+..+|||+|||+|..+..+++..+ .++++++|+++.+++.++++++..+.. +++++.+|.....+
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh
Confidence 3334344444555667999999999999999999877 689999999999999999999888765 58888888764333
Q ss_pred HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.. ..+||.|+++........+++.+.+.|+|||.+++.
T Consensus 84 ~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DS------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hh------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 22 368999999876666778999999999999999985
No 12
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.73 E-value=3e-16 Score=115.33 Aligned_cols=113 Identities=27% Similarity=0.298 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
..++...+...++.+|||+|||+|..+..+++..+ +.+++++|+++++++.++++++..++. +++++.+|+... +
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~ 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c
Confidence 33333344556778999999999999999998876 789999999999999999999888764 589999887421 1
Q ss_pred hhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 89 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
.++||+|++++.......+++.+.+.|+|||.+++...
T Consensus 95 ------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 95 ------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred ------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 35799999987666678889999999999999998653
No 13
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.72 E-value=8.1e-17 Score=120.01 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=87.8
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
.+...++.+|||+|||+|+.+..+++..++.++|+++|+++++++.+++++...++.++++++.+|+.+.++.
T Consensus 67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------- 139 (205)
T PRK13944 67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------- 139 (205)
T ss_pred hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------
Confidence 3345566799999999999999999887656799999999999999999999988877899999998654332
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
..+||+|+++...... .+.+.+.|++||.+++..
T Consensus 140 ~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEE
Confidence 3689999998754433 356789999999998853
No 14
>PLN03075 nicotianamine synthase; Provisional
Probab=99.72 E-value=1.2e-16 Score=123.57 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cCCCCcEEEEEcchHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALS 83 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~ 83 (188)
+..+++|..+... ++++|+|||||.| .+++.++....++++++++|.++++++.|++.++. .++.++++|+.+|+.+
T Consensus 110 ~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~ 188 (296)
T PLN03075 110 KLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD 188 (296)
T ss_pred HHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence 4556666665555 8899999999955 55666665444489999999999999999999964 7888899999999987
Q ss_pred HHHHHhhcccCCCceeEEEEeC----CccchHHHHHHHHhccCcCeEEEEec
Q 029764 84 VLDQLLKYSENEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
..+. .+.||+||++. .+......++++.+.|+|||++++-.
T Consensus 189 ~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4322 37899999985 34778899999999999999999975
No 15
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=2.3e-16 Score=115.52 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=88.2
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|||+|||+|..++.++...+ +++|+++|.++++++.|+++.+..++.+ ++++++|+.+... .++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~ 112 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEK 112 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCC
Confidence 33478999999999999999998766 7899999999999999999999998765 9999999876421 368
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
||+|++.. ..++..+++.+.+.|+|||.+++..
T Consensus 113 fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 113 FDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999975 3466789999999999999999863
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=1.3e-16 Score=120.04 Aligned_cols=109 Identities=20% Similarity=0.334 Sum_probs=95.6
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...++.+|||+|||||-.+..+++..+ .++|+++|+++.|++.+++.+.+.+..+ ++++++|+.+. | + ++.
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~ 118 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDN 118 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCC
Confidence 334789999999999999999999987 8999999999999999999999888776 99999999664 3 3 368
Q ss_pred ceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 97 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 97 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+||++.+.. +..++...++++.|+|||||.+++.+...
T Consensus 119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 999998874 56688999999999999999999987765
No 17
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.71 E-value=1.5e-16 Score=116.27 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=87.5
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...++.+|||+|||+|..+..++...+ +++|+++|.++++++.++++.++.++. +++++++|+.+.. ..+
T Consensus 39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--------~~~ 108 (181)
T TIGR00138 39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--------HEE 108 (181)
T ss_pred HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--------ccC
Confidence 344688999999999999999987665 689999999999999999999988875 5999999987641 137
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+||+|++++ ..++..+++.+.++|+|||.+++.
T Consensus 109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred CccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 899999986 556778889999999999999975
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.71 E-value=8.7e-17 Score=121.73 Aligned_cols=112 Identities=20% Similarity=0.294 Sum_probs=83.3
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
++...++.+|||+|||+|..+..+++...+.++|+++|+++++++.|++++...+.. +++++++|+.+. + + .
T Consensus 42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~-----~ 113 (233)
T PF01209_consen 42 LLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-F-----P 113 (233)
T ss_dssp HHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------
T ss_pred ccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-C-----C
Confidence 345667789999999999999999998876789999999999999999999988765 799999999765 2 2 2
Q ss_pred CCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 95 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 95 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+++||+|++.. +..+....++++.++|||||.+++-+...
T Consensus 114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 58999999874 34567889999999999999999877654
No 19
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.70 E-value=1.8e-16 Score=118.67 Aligned_cols=115 Identities=27% Similarity=0.376 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
.|.....+...+...++.+|||||||+|+.+..+++...++++|+++|+++++++.++++++..++. +++++++|+...
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~ 139 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLG 139 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccC
Confidence 3444444555556778899999999999999999988765689999999999999999999988864 699999998654
Q ss_pred HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+. .++||+|++++..... .+.+.+.|+|||.+++.
T Consensus 140 ~~~-------~~~fD~I~~~~~~~~~---~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEE-------NAPYDRIYVTAAGPDI---PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCc-------CCCcCEEEECCCcccc---hHHHHHhhCCCcEEEEE
Confidence 221 4789999998755443 34567889999999884
No 20
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.2e-16 Score=117.08 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
|.....|-.++...++.+|||||||+||.+.-||+.. .+|+++|..++..+.|+++++..|+.+ +.++++|...-.
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~ 133 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGW 133 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCC
Confidence 3344444446678888999999999999999999974 499999999999999999999999876 999999987654
Q ss_pred HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+. ...||.|++.+......+ .+.+.|++||.+++.
T Consensus 134 ~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 134 PE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred CC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 43 479999999876555433 356788999999985
No 21
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.70 E-value=2.3e-16 Score=118.40 Aligned_cols=113 Identities=27% Similarity=0.349 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
.....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.|+++++..++ ++++++++|+.+..+
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc
Confidence 3333444445677888999999999999999999876567899999999999999999999887 469999999865432
Q ss_pred HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
. ..+||+|+++...... .+.+.+.|+|||.+++.
T Consensus 143 ~-------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 P-------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP 176 (215)
T ss_pred c-------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence 2 3689999998755443 45577899999999984
No 22
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.70 E-value=7.6e-16 Score=114.03 Aligned_cols=121 Identities=24% Similarity=0.269 Sum_probs=96.9
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
+.++...++...+...++.+|||+|||+|..+..++...+ +++++++|.++++++.++++++..++. +++++.+|+.+
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~ 101 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPE 101 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHH
Confidence 4556666555566666778999999999999999987655 689999999999999999999988874 69999999876
Q ss_pred HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.++.+ ...+|.++++.. .....+++.+.++|+|||.+++....
T Consensus 102 ~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 102 CLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 54433 245788888753 34578899999999999999987543
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=2.2e-16 Score=112.26 Aligned_cols=108 Identities=27% Similarity=0.387 Sum_probs=89.9
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+..+|||+|||+|..+..++....++.+++++|+++++++.|++.++..++. +++++++|..+ ++... .++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence 45679999999999999999965544889999999999999999999999887 79999999987 43210 1689
Q ss_pred eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
|+|++... ..+....++.+.++|+++|.+++.+..
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999853 345567899999999999999998766
No 24
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.68 E-value=3.8e-15 Score=116.13 Aligned_cols=118 Identities=14% Similarity=0.280 Sum_probs=93.3
Q ss_pred CcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764 4 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 79 (188)
Q Consensus 4 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
..+++..++...+. ..++.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|++.+++.++++++++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~ 179 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS 179 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34566677766543 13457999999999999999999876 78999999999999999999999988778999999
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 80 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|..+.++ ..+||+|+++.+. ..+..++..+.+.|++||.+++.
T Consensus 180 D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 180 DLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred chhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9865321 3579999987321 11245677788999999999985
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=1.2e-15 Score=117.43 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=87.1
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..+..++.. +.+|+++|+++++++.|++++...++.++++++++|+.+..+.. .++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence 35679999999999999999985 57999999999999999999998888778999999997753322 4789
Q ss_pred eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEe
Q 029764 99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|+|++... ..+...+++.+.++|||||.+++.
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998742 345678899999999999999764
No 26
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.67 E-value=2.8e-15 Score=123.35 Aligned_cols=160 Identities=23% Similarity=0.279 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
....++..++...++.+|||+|||+|..+..++......++|+++|+++++++.++++++.+|+.+ ++++++|+.+...
T Consensus 239 ~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~ 317 (434)
T PRK14901 239 RSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLE 317 (434)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccc
Confidence 344555666666778899999999999999999987656899999999999999999999999864 9999999876431
Q ss_pred HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEeccccCccccCC
Q 029764 87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP 141 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~ 141 (188)
.... ..++||.|++|.+.+. ..++++.+++.|||||.+|....... +
T Consensus 318 ~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-----~ 389 (434)
T PRK14901 318 LKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-----P 389 (434)
T ss_pred cccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----h
Confidence 1100 1368999999853211 24678888999999999988655531 1
Q ss_pred CCCCCCCcccchHHHHHHHHHHhhcCCCeEEE-----Eeec---CCceEEEEEc
Q 029764 142 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRI 187 (188)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~lp~---~~G~~~~~~~ 187 (188)
+++ ...+...+..+|+|+.. ++|- .+|+-+++-+
T Consensus 390 ~En------------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~ 431 (434)
T PRK14901 390 AEN------------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLR 431 (434)
T ss_pred hhH------------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence 111 33444445667888654 3453 3888888754
No 27
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.67 E-value=1.7e-16 Score=117.97 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
+.+...+++++.+ ...++.+|||||||+|+.+..++....+.++|+++|.+++..+.|+++++..++. ++.++++|..
T Consensus 56 s~P~~~a~~l~~L-~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~ 133 (209)
T PF01135_consen 56 SAPSMVARMLEAL-DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGS 133 (209)
T ss_dssp --HHHHHHHHHHT-TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GG
T ss_pred hHHHHHHHHHHHH-hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchh
Confidence 3344556666654 5888899999999999999999988765678999999999999999999999876 6999999987
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.-.+. ..+||.|++.+...... ..+.+.|++||.||+.
T Consensus 134 ~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 134 EGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred hcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence 65433 37899999987655433 3466789999999984
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.67 E-value=9.6e-16 Score=111.02 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
.++|...+...+..+|||+|||+|..++.+++..+ ..+++++|+++.+++.++++++.+++.+ ++++..|..+..+
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-- 95 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-- 95 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--
Confidence 33454444554788999999999999999999877 6789999999999999999999999877 9999999876432
Q ss_pred hhcccCCCceeEEEEeCCc----c----chHHHHHHHHhccCcCeEEEE
Q 029764 89 LKYSENEGSFDYAFVDADK----D----NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~----~----~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.++||+|+++.+. . ....+++.+.+.|+|||.+++
T Consensus 96 ------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 3799999998532 1 246788888999999998865
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.66 E-value=2.2e-15 Score=114.17 Aligned_cols=109 Identities=18% Similarity=0.397 Sum_probs=89.5
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
+...++.+|||+|||+|..+..+++..+++++++++|+++++++.+++++...++ ++++++++|+.+.. + ..
T Consensus 41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-----~~ 112 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F-----DD 112 (231)
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C-----CC
Confidence 3445677999999999999999998875578999999999999999999887776 46999999986531 1 14
Q ss_pred CceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764 96 GSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 96 ~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
++||+|++.. +..++..+++++.++|+|||.+++.+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 7899999863 345667889999999999999988654
No 30
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.7e-15 Score=113.45 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764 10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 89 (188)
Q Consensus 10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (188)
.++..-....++.+|+|.|+|+|..+.+||....+.++|+++|+.++.++.|++|++..++.+++++..+|..+...
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--- 160 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--- 160 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc---
Confidence 34455567889999999999999999999998877899999999999999999999999999889999999877533
Q ss_pred hcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
...||.||+|. ++++++++.+...|+|||.+++-.+.
T Consensus 161 -----~~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 161 -----EEDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred -----ccccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 35899999985 56689999999999999999985444
No 31
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.65 E-value=1.9e-14 Score=118.17 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
..++++..++...++.+|||+|||+|..+..++..+.++++|+++|+++++++.+++++++.|+. +++++++|+.+...
T Consensus 224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~ 302 (431)
T PRK14903 224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh
Confidence 44556666677778889999999999999999998765789999999999999999999999985 48999999876422
Q ss_pred HHhhcccCCCceeEEEEeCCcc-------------------------chHHHHHHHHhccCcCeEEEEecccc
Q 029764 87 QLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.. .++||.|++|.+.. ...+.++.+++.|+|||.+++.....
T Consensus 303 ~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 303 YV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 22 36799999985331 12456788899999999999876664
No 32
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.65 E-value=2.3e-15 Score=111.95 Aligned_cols=105 Identities=23% Similarity=0.331 Sum_probs=85.3
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
++.+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...++ .++.++++|+.+.++... ..++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc----Cccccc
Confidence 567999999999999999998876 67999999999999999999988776 469999999844444321 246899
Q ss_pred EEEEeCCc---c--------chHHHHHHHHhccCcCeEEEEe
Q 029764 100 YAFVDADK---D--------NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 100 ~i~id~~~---~--------~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.|++.... . ....+++.+.+.|+|||.+++.
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 99985321 1 1467899999999999999885
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=2.6e-15 Score=115.75 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=87.6
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh--cCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++... ....++++++++|+.+. + + .
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----~ 142 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----D 142 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----C
Confidence 455677999999999999999998765467999999999999999877532 22235799999998653 1 1 2
Q ss_pred CCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 95 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 95 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.++||+|++.. +..+...++.++.++|||||.+++.+...
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 47899998863 34567889999999999999998876553
No 34
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=9.8e-15 Score=120.54 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
.+...++...+...++.+|||+|||+|..+..++....+.++|+++|+++++++.+++++++.|+.+ ++++++|+.+..
T Consensus 236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~ 314 (444)
T PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVH 314 (444)
T ss_pred ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccccc
Confidence 4456666666777778899999999999999999987547899999999999999999999999865 999999987653
Q ss_pred HHHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 86 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..+ .++||+|++|++... ...+++.+.++|+|||.++......
T Consensus 315 ~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 315 EKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred chh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 333 268999999964210 1356888889999999999765443
No 35
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.63 E-value=3.2e-14 Score=111.96 Aligned_cols=118 Identities=15% Similarity=0.284 Sum_probs=93.0
Q ss_pred CcHHHHHHHHHHHH-H-c--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764 4 TAPDAGQLMAMLLR-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 79 (188)
Q Consensus 4 ~~~~~~~~l~~l~~-~-~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
..+++..++...+. . . ++.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|++.+++.++++++++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~ 191 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES 191 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 34566677665543 1 2 236899999999999999999876 78999999999999999999999888778999999
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 80 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|..+.++ .++||+|+++.+. ..+..+++.+.+.|+|||.+++.
T Consensus 192 D~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 192 DLFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred chhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9865432 2579999987311 11346678888999999999985
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=3.5e-15 Score=115.39 Aligned_cols=109 Identities=22% Similarity=0.331 Sum_probs=85.0
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
+.+.++.+|||||||.|..+..+|+.. +++|+++.++++..+.+++.+++.|+.+++++...|..+. .
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~ 125 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------P 125 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------C
Confidence 457788899999999999999999985 6899999999999999999999999999999999997654 3
Q ss_pred CceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 96 GSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 96 ~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
.+||.|+.-. ...++..+++.+.++|+|||.++++......
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 5899998764 2356789999999999999999998766533
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=6.4e-15 Score=112.95 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=97.9
Q ss_pred HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029764 12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 91 (188)
Q Consensus 12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (188)
+...+.+.++.+|||||||-|..++++|+.+ +.+|+++++|+++.+.+++.++..|+..+++++..|-.++
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~------- 134 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF------- 134 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-------
Confidence 3444567899999999999999999999986 6899999999999999999999999998899998887655
Q ss_pred ccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 92 SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 92 ~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
.+.||-|+.-+ .++++..+|+.+.+.|+|||.++++......
T Consensus 135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 35699998764 4567899999999999999999998877544
No 38
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.63 E-value=1.8e-14 Score=106.56 Aligned_cols=106 Identities=21% Similarity=0.335 Sum_probs=87.4
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+..++||||||+|..+..+|...| +..++++|+++++++.|++++...++. +++++++|+.+....+. ..+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCce
Confidence 3556999999999999999999877 789999999999999999999888875 79999999987655432 13589
Q ss_pred eEEEEeCCc---cc--------hHHHHHHHHhccCcCeEEEEe
Q 029764 99 DYAFVDADK---DN--------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 99 D~i~id~~~---~~--------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|.|+++.+. .. ...+++.+.++|+|||.+++.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 999987421 11 257899999999999999874
No 39
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.63 E-value=6.4e-16 Score=103.36 Aligned_cols=102 Identities=31% Similarity=0.571 Sum_probs=51.4
Q ss_pred EEEcccchHHHHHHHhhCCCCC--EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 25 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 25 LeiG~g~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
||||+..|.++.++++.+++.. +++++|..+. .+.+++.+++.++.++++++.+++.+.++.+. .+++|+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence 7999999999999999887554 7999999986 44455555556777789999999999888774 37999999
Q ss_pred EeCCc--cchHHHHHHHHhccCcCeEEEEecc
Q 029764 103 VDADK--DNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 103 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
+|+.+ +.....++.+++.|+|||+++++|+
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 99865 5567788999999999999999984
No 40
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.62 E-value=7.3e-15 Score=99.72 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=84.8
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+.+|||+|||+|..+..+++.. ..+++++|++|..++.++.++...+..++++++++|..+..+.+ ..++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence 3589999999999999999885 47999999999999999999999988888999999998776433 2589999
Q ss_pred EEEeCCcc-----------chHHHHHHHHhccCcCeEEEE
Q 029764 101 AFVDADKD-----------NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 101 i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|+.+.+.. .+..+++.+.++|++||.+++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99985321 246789999999999999876
No 41
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.62 E-value=5.3e-15 Score=112.26 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-HHHHH
Q 029764 10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQL 88 (188)
Q Consensus 10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 88 (188)
.++-..+.+.++.+|||.|+|+|..+.++++...+.++|++.|..++.++.|+++++.+++.+++++.+.|..+ .+..-
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 34455668899999999999999999999998877899999999999999999999999999899999999863 22110
Q ss_pred hhcccCCCceeEEEEeCCccchHHHHHHHHhcc-CcCeEEEEe
Q 029764 89 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYD 130 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~ 130 (188)
....+|.||+|. +.++..+..+.+.| ++||.+++-
T Consensus 110 -----~~~~~DavfLDl--p~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 110 -----LESDFDAVFLDL--PDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp ------TTSEEEEEEES--SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred -----ccCcccEEEEeC--CCHHHHHHHHHHHHhcCCceEEEE
Confidence 136899999996 34467788999999 899999874
No 42
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.62 E-value=7.3e-14 Score=107.92 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
..+...++...++.+|||+|||+|..+..++..+...++|+++|+++++++.+++++++.++. ++.+++.|+.+....
T Consensus 60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~- 137 (264)
T TIGR00446 60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAA- 137 (264)
T ss_pred HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhh-
Confidence 344444556667789999999999999999998765679999999999999999999999875 589999998654221
Q ss_pred hhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 89 LKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.+.||.|++|.+... ..++++.++++|||||.++......
T Consensus 138 ------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 138 ------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred ------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 356999999853221 2357888889999999999875543
No 43
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=1.6e-14 Score=110.56 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=86.4
Q ss_pred cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++.+|||+|||+|..+..+++.+ .++.+++++|+++++++.|+++++..+..++++++++|+.+.. .+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 466799999999999999988753 2378999999999999999999988887778999999986531 256
Q ss_pred eeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 98 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 98 ~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+|+|++.. .......+++++.+.|+|||.+++.+.+
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 89988653 1223467899999999999999998754
No 44
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.61 E-value=5.4e-15 Score=109.96 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=88.3
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||.|..+.++|+. +..|+++|++++.++.|+......++. +++.+..+.+.... .++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~F 125 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQF 125 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCc
Confidence 46789999999999999999996 689999999999999999998887753 67777777666432 4799
Q ss_pred eEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
|+|++-- +.+++..++..|.+++||||.++++....
T Consensus 126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999763 55677889999999999999999987664
No 45
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.61 E-value=4.3e-14 Score=103.45 Aligned_cols=157 Identities=20% Similarity=0.279 Sum_probs=119.1
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchH--HHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 80 (188)
..|..++++..|+...+.+.++|+.|..|. +++.||.+. ..+++++||.++++.+...++.+...++++.++|+.++
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 357899999999999999999999877543 344444332 23799999999999988888888888888778999998
Q ss_pred hH-HHHHHHhhcccCCCceeEEEEeCCccchH-HHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHH
Q 029764 81 AL-SVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 158 (188)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (188)
.. +.++.+ ...|++++|+...++. .+|+.+ ++-+.|.++|..|.+..+. . --
T Consensus 105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~ 158 (218)
T PF07279_consen 105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GF 158 (218)
T ss_pred CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Cc
Confidence 64 466664 7899999999887777 666654 4445666777787764220 0 12
Q ss_pred HHHHHhhcCCCeEEEEeecCCceEEEEE
Q 029764 159 DLNRSLADDPRVQLSHVALGDGITICRR 186 (188)
Q Consensus 159 ~~~~~~~~~~~~~~~~lp~~~G~~~~~~ 186 (188)
.|...++..+.+.+.+||+|.|+.|++-
T Consensus 159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 159 SWRSVLRGRRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred cHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence 3445567778899999999999999873
No 46
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=3.4e-14 Score=108.29 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=86.5
Q ss_pred CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
++.+|||+|||+|..+..+++.++ ++++++++|+++++++.|++++...+...+++++++|..+.. ...+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 123 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA 123 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence 567999999999999999998753 378999999999999999999887766667999999986541 2468
Q ss_pred eEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 99 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 99 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
|+|++... ..+...+++++.+.|+|||.+++.+...
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 88876532 1234678999999999999999988654
No 47
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.61 E-value=4.8e-14 Score=115.87 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
....++..++...++.+|||+|||+|+.+..++...+ +++|+++|+++++++.+++++++.|+...+.+..+|..+...
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4455666666777888999999999999999999886 789999999999999999999999876444456666543211
Q ss_pred HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+. ..++||.|++|++... ...+++.++++|||||.++......
T Consensus 304 -~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 304 -WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred -cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 10 1368999999843211 2467888899999999999876664
No 48
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.60 E-value=2.7e-14 Score=117.86 Aligned_cols=118 Identities=25% Similarity=0.249 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764 8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 87 (188)
Q Consensus 8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 87 (188)
...+...++...++.+|||+|||+|..+..++..+...++|+++|+++++++.++++++..|+. +++++++|+.+..+
T Consensus 238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~- 315 (445)
T PRK14904 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP- 315 (445)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc-
Confidence 3444445556667789999999999999999987765679999999999999999999999875 69999999865421
Q ss_pred HhhcccCCCceeEEEEeCCcc-------------------------chHHHHHHHHhccCcCeEEEEecccc
Q 029764 88 LLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 88 ~~~~~~~~~~~D~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..+||.|++|.+.. ....+++.+.+.|+|||.+++.....
T Consensus 316 -------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 316 -------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred -------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 36899999984321 01247888899999999999976654
No 49
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=9e-15 Score=116.83 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=88.8
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.++++.+..++.++++++++|+.+. .+ ..++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~-----~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ--PF-----EDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC--CC-----CCCCc
Confidence 456799999999999999999875 5799999999999999999988888877899999998653 11 24789
Q ss_pred eEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
|+|++.. +..+...+++++.++|||||.+++.+..
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999753 3345678999999999999999987644
No 50
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.60 E-value=1.2e-13 Score=112.10 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=89.4
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
...++++|||+|||+|..++..+.. ...+|+++|.++.+++.|++|++.+++. ++++++++|+.+.+..+... .
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~ 291 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---G 291 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---C
Confidence 4557889999999999998876643 2459999999999999999999999986 57999999999987765322 3
Q ss_pred CceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764 96 GSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 96 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
++||+|++|.+. ..+..++..+.++|++||.+++....
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 689999999642 13455666778999999999875443
No 51
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.60 E-value=1.1e-14 Score=109.11 Aligned_cols=113 Identities=21% Similarity=0.276 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
+.|.....+..++...++.+|||+|||+|+.+..++... .+++++|.++++++.+++++++.++.+ +++..+|..+
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~ 137 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWK 137 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCccc
Confidence 345555555556667778899999999999999888763 489999999999999999999988754 9999999754
Q ss_pred HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 138 ~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 138 GWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred CCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 3221 3689999998754433 45678999999999985
No 52
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.60 E-value=6e-14 Score=115.28 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
..+.+...++...++.+|||+|||+|..+..++...+ +++|+++|.++++++.++++++..++. ++++++|+.+...
T Consensus 231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~ 307 (427)
T PRK10901 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ 307 (427)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh
Confidence 3445555566677888999999999999999999875 579999999999999999999998864 6888999865322
Q ss_pred HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.+ ..++||.|++|.+... ...+++.+.+.|+|||.+++.....
T Consensus 308 ~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 308 WW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred hc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 11 1367999999864211 1357888889999999999876543
No 53
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=1.5e-14 Score=114.18 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=85.3
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
++.+|||||||+|..+..+++. +.+|++||+++++++.|+++....+...+++++++++.+... ..++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence 4568999999999999999873 679999999999999999887655554579999999866421 147899
Q ss_pred EEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+|++.. +..+...+++.+.++|||||.+++....
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999764 3456788999999999999999998654
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=3.3e-14 Score=107.27 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=87.2
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
++|||||||+|..+..+++.++ +.+++++|+++++++.+++++...++.++++++.+|..+. + + .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence 4799999999999999999876 6899999999999999999999988888899999987443 1 1 3589999
Q ss_pred EEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 102 FVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 102 ~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
++.. +..+...+++.+.++|+|||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 8652 3345678999999999999999998764
No 55
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.59 E-value=2e-14 Score=108.36 Aligned_cols=116 Identities=21% Similarity=0.281 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
+-+|..++......+|||+|||+|..++.+|+..+ ..++++||+++++++.|+++++.+++.++++++++|..++.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 45677777777888999999999999999999877 59999999999999999999999999999999999998876654
Q ss_pred hhcccCCCceeEEEEeCCc---------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 89 LKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+||+|+++.+. ....++++.+..+||+||.+.+.
T Consensus 112 -----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 112 -----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred -----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 24579999987321 11356778888999999998873
No 56
>PRK00811 spermidine synthase; Provisional
Probab=99.58 E-value=4.2e-14 Score=110.22 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=86.3
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C--CCcEEEEEcchHHHHHHHhhccc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
..++++||+||||.|..+..+++..+ ..+|++||+++++++.+++++...+ . .++++++.+|+...+...
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~----- 147 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET----- 147 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence 34678999999999999999987633 5799999999999999999987542 2 468999999999877652
Q ss_pred CCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEe
Q 029764 94 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 94 ~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.++||+|++|...+ ...++++.+.+.|+|||++++.
T Consensus 148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 47899999985221 1257789999999999999975
No 57
>PLN02366 spermidine synthase
Probab=99.58 E-value=2.7e-13 Score=106.46 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=87.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
..++++||+||||.|..+..++++ +...+|+.+|+++++++.+++.+...+ + .++++++.+|+...+....
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----- 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----- 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence 467889999999999999999886 435799999999999999999987542 2 3689999999988876531
Q ss_pred CCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.++||+|++|...+ ...++++.+.+.|+|||+++...
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 36899999996332 13578999999999999998753
No 58
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=2.5e-14 Score=106.02 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=81.8
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...++.+|||+|||+|..+.++++. +.+|+++|+++++++.++++.+..++. ++++...|..+. .+ .+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~ 94 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DG 94 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CC
Confidence 3556789999999999999999985 569999999999999999998887764 488888887543 11 35
Q ss_pred ceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEe
Q 029764 97 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 97 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+||+|++... ......+++.+.++|+|||.+++.
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7999987632 224568899999999999986543
No 59
>PRK01581 speE spermidine synthase; Validated
Probab=99.57 E-value=2.7e-13 Score=107.43 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=85.4
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH--H---hcCC-CCcEEEEEcchHHHHHHHh
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLL 89 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~---~~~~-~~~~~~~~~d~~~~~~~~~ 89 (188)
....++++||++|||.|..+..+++.. +..+|++||+++++++.|++.. . +..+ .++++++.+|+.+++...
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~- 223 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP- 223 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence 346678899999999999888888753 3679999999999999999731 1 1122 468999999999987653
Q ss_pred hcccCCCceeEEEEeCCccc--------hHHHHHHHHhccCcCeEEEEe
Q 029764 90 KYSENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+.||+|++|..... ..++++.+.+.|+|||++++.
T Consensus 224 -----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 -----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred -----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 468999999953211 256889999999999999886
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.57 E-value=1.6e-13 Score=107.31 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=90.2
Q ss_pred HHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 7 DAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 7 ~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
.+...+..+.. ..++.+|||+|||+|..++.+++. . ..+++++|+++.+++.+++++..+++.+++.+..++....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~- 221 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP- 221 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence 34444444433 346689999999999999888764 3 4699999999999999999999988877777777663211
Q ss_pred HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
..++||+|+++........++..+.++|+|||.+++....
T Consensus 222 --------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 222 --------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred --------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1368999999876666678889999999999999997654
No 61
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.57 E-value=2.9e-14 Score=110.69 Aligned_cols=113 Identities=18% Similarity=0.298 Sum_probs=90.8
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
+...++.+|||+|||+|..+..+++...+.++|+++|+++++++.|+++....++. +++++.+|..+. + + ..
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~ 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----AD 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CC
Confidence 34567789999999999998888877654679999999999999999999888764 689999987543 1 1 14
Q ss_pred CceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 96 GSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 96 ~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
++||+|+... ...+....++++.++|||||.+++.+....+
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 6899999774 2345578899999999999999998776533
No 62
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.57 E-value=5.9e-14 Score=109.58 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHH---cCC-CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764 5 APDAGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80 (188)
Q Consensus 5 ~~~~~~~l~~l~~~---~~~-~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 80 (188)
.+++..++...... .++ .+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..+++.++++++++|
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 45667777665432 223 6899999999999999999876 789999999999999999999998887779999999
Q ss_pred hHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEec
Q 029764 81 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
..+.++ ..+||+|+++.+. ..+..+++.+.+.|++||++++.-
T Consensus 174 ~~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 174 LFEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred hhccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 865321 2479999986210 024467778889999999998853
No 63
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.57 E-value=1.1e-13 Score=111.08 Aligned_cols=114 Identities=21% Similarity=0.343 Sum_probs=96.8
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcc
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYS 92 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 92 (188)
+....++++||++.|.||..++..|.. ++ ++++||.+...++.|++|++.+|+. .++.++++|+.+.+......
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~- 287 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR- 287 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence 445556899999999999999999885 44 9999999999999999999999986 56899999999999887654
Q ss_pred cCCCceeEEEEeCC------------ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 93 ENEGSFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 93 ~~~~~~D~i~id~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+.+||+|++|.+ ..++..++..+.++|+|||.+++.+...
T Consensus 288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 569999999953 1346678888899999999999977664
No 64
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.57 E-value=6.2e-13 Score=102.04 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=84.4
Q ss_pred HHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 7 DAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 7 ~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
.+...+..+.. ..++.+|||+|||+|..++.+++.. ..+++++|+++.+++.|+++++.+++..++.+..++
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----- 177 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----- 177 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----
Confidence 44445555544 3477899999999999998877642 347999999999999999999888765444433221
Q ss_pred HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.+||+|+++........++..+.+.|+|||.+++.+..
T Consensus 178 ----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 ----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 26999998876666678889999999999999997554
No 65
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.56 E-value=2.9e-13 Score=100.10 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764 11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 90 (188)
Q Consensus 11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (188)
++.++....++.+|||+|||+|..++.++... ..+|+++|.++++++.+++|++.+++. +++++++|+.+.++..
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~-- 118 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP-- 118 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc--
Confidence 45555444567899999999999998654432 369999999999999999999998865 6999999998766432
Q ss_pred cccCCCceeEEEEeCC-ccc-hHHHHHHHHh--ccCcCeEEEEec
Q 029764 91 YSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYDN 131 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~ 131 (188)
..+||+||+|.+ ... ....++.+.+ +|++++++++..
T Consensus 119 ----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 119 ----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred ----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 357999999976 222 3445555543 478999988864
No 66
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.56 E-value=4.5e-14 Score=104.47 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
..++. .+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++.+..++. +.+...|.... .+
T Consensus 20 ~~l~~-~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~ 91 (195)
T TIGR00477 20 SAVRE-AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL 91 (195)
T ss_pred HHHHH-HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc
Confidence 33443 345556789999999999999999984 679999999999999999988777763 66667775432 11
Q ss_pred hhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEe
Q 029764 89 LKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.++||+|++... ......+++.+.++|+|||++++-
T Consensus 92 ------~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 ------NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ------cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 357999987532 234567899999999999985553
No 67
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=1.1e-13 Score=109.22 Aligned_cols=104 Identities=22% Similarity=0.394 Sum_probs=83.8
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
+...++.+|||+|||+|+.+..+++..+..++|+++|.++++++.|+++++..+.. ++.++++|+.+..+. .
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~ 147 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------F 147 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-------c
Confidence 34567789999999999999999988754468999999999999999999988874 689999998654332 3
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+||+|+++....+ ..+.+.+.|++||.+++.
T Consensus 148 ~~fD~Ii~~~g~~~---ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 148 APYDVIFVTVGVDE---VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCccEEEECCchHH---hHHHHHHhcCCCCEEEEE
Confidence 67999999865433 234567899999998874
No 68
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.55 E-value=2.9e-13 Score=98.83 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764 10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 89 (188)
Q Consensus 10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (188)
.+|.......++.+|||+|||+|..+..++... .+++++|+++++++.++++++..+. +++++.+|..+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 556566667778899999999999999998863 3899999999999999999987764 4788888875531
Q ss_pred hcccCCCceeEEEEeCCcc------------------------chHHHHHHHHhccCcCeEEEEecc
Q 029764 90 KYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
.++||+|+++.+.. ....+++.+.++|+|||.+++...
T Consensus 80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 35899999874210 034578888999999999888643
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.55 E-value=6.3e-14 Score=112.58 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=82.4
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
..+|||+|||+|..++.+++..| ..+|+++|.++.+++.++++++.++.. .+++++.+|..+.++ ..+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~f 299 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRF 299 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCE
Confidence 35899999999999999999877 789999999999999999999877643 368888888754321 3589
Q ss_pred eEEEEeCCcc--------chHHHHHHHHhccCcCeEEEEe
Q 029764 99 DYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 99 D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|+|+++.+.. ....++..+.+.|+|||.+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999974321 2356788889999999998875
No 70
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=2.3e-14 Score=93.23 Aligned_cols=92 Identities=24% Similarity=0.344 Sum_probs=73.6
Q ss_pred EEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029764 25 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 104 (188)
Q Consensus 25 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id 104 (188)
||+|||+|..+..+++. + ..+++++|+++++++.+++..... ++.+..+|..+. .+ ..++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l--~~-----~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL--PF-----PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS--SS------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC--cc-----ccccccccccc
Confidence 79999999999999997 3 789999999999999999986543 356888988665 22 25899999987
Q ss_pred C---CccchHHHHHHHHhccCcCeEEEE
Q 029764 105 A---DKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 105 ~---~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
. +.++...+++++.++|||||.+++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 4 235678899999999999999986
No 71
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=3.9e-14 Score=93.84 Aligned_cols=93 Identities=20% Similarity=0.394 Sum_probs=73.0
Q ss_pred EEEEcccchHHHHHHHhhCCC--CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 24 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 24 vLeiG~g~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
|||+|||+|..+..++..++. ..+++++|+++++++.++++....+. +++++++|+.+. +.. .++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence 799999999999999988732 37999999999999999999887664 689999999774 332 5799999
Q ss_pred EEeC------CccchHHHHHHHHhccCcCe
Q 029764 102 FVDA------DKDNYCNYHERLMKLLKVGG 125 (188)
Q Consensus 102 ~id~------~~~~~~~~~~~~~~~L~~gG 125 (188)
++.. +.+....+++++.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9942 23345778999999999998
No 72
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=5.1e-14 Score=108.47 Aligned_cols=98 Identities=23% Similarity=0.324 Sum_probs=81.1
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|||||||+|..+..++...+ +.+++++|+++++++.+++++ ++++++.+|..+..+ ..+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~ 93 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQA 93 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCC
Confidence 45667999999999999999998876 789999999999999998864 357888998864321 368
Q ss_pred eeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
||+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999998742 345678899999999999999885
No 73
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.54 E-value=7.2e-13 Score=102.74 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=85.7
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
..++++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+ + .++++++.+|+.+.+...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 34667999999999999988887653 5789999999999999999886543 1 257889999998877653
Q ss_pred CCceeEEEEeCCcc-----c--hHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.++||+|++|.... . ..++++.+.++|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 47899999986311 1 357889999999999999986
No 74
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=9.5e-14 Score=116.03 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=82.4
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..+++.+++.++.+|..+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 45899999999999999998876 789999999999999999999988887789999999765321 358999
Q ss_pred EEEeCCc-----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 101 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 101 i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 9986310 11234566777899999999885
No 75
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=4.9e-14 Score=108.41 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=79.3
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|++. +++++++|+.+.. . .++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~-------~~~ 89 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P-------KPD 89 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C-------CCC
Confidence 34667999999999999999999876 78999999999999988762 4778899986542 1 368
Q ss_pred eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
||+|++.. +..+...++.++.+.|||||.+++.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 99999874 2345678899999999999999885
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.53 E-value=1.4e-13 Score=108.59 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=89.8
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
+...+..+|||||||+|..+..+++..| +.+++++|. |++++.++++++..++.++++++.+|..+. . .
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~-------~ 213 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------Y 213 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C-------C
Confidence 3455668999999999999999999987 789999998 789999999999999888999999998642 1 2
Q ss_pred CceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764 96 GSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 135 (188)
Q Consensus 96 ~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 135 (188)
+.+|+|++.. .......+++++.+.|+|||.+++.|..+.
T Consensus 214 ~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 4579988664 122335689999999999999999987664
No 77
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.53 E-value=2.5e-13 Score=117.63 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=91.7
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhccc
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
+....++++|||+|||+|..++.++..- ..+|+++|+++.+++.|++|++.+++. ++++++++|+.+.+..+
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 4455678899999999999999999852 347999999999999999999999986 67999999999877654
Q ss_pred CCCceeEEEEeCCc--------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764 94 NEGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 94 ~~~~~D~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.++||+|++|.+. ..+..++..+.++|+|||.+++....
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3689999999642 12456778888999999999886543
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.52 E-value=3.7e-13 Score=103.08 Aligned_cols=115 Identities=24% Similarity=0.409 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 6 PDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 6 ~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
+.+..++..++... ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|..+
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 45556666555443 345899999999999999999876 779999999999999999999888875 69999999865
Q ss_pred HHHHHhhcccCCCceeEEEEeCCcc-----------------------------chHHHHHHHHhccCcCeEEEEe
Q 029764 84 VLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+ .++||+|+++.+.. .+..+++.+.++|++||.+++.
T Consensus 149 ~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 149 PLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred cCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 321 37899999863211 0235678888999999999985
No 79
>PRK04266 fibrillarin; Provisional
Probab=99.52 E-value=1.9e-13 Score=103.06 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=81.7
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH--HHHhhccc
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSE 93 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~ 93 (188)
+...++.+|||+|||+|..+..++...+ .++|+++|+++++++.+.++++.. +++.++.+|+.+.. ..+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l----- 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV----- 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence 4556778999999999999999999876 679999999999999887776543 46888999875421 111
Q ss_pred CCCceeEEEEeCCcc-chHHHHHHHHhccCcCeEEEEe
Q 029764 94 NEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 94 ~~~~~D~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+||+|+.+.... ....+++.+.+.|||||.+++.
T Consensus 139 -~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 139 -VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 25699999876432 2234578999999999999985
No 80
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=7.7e-13 Score=103.03 Aligned_cols=116 Identities=21% Similarity=0.288 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 6 PDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 6 ~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
+.+...|..+... .++++|||+|||+|-.++..++.- ..+|+++|++|.+++.|++|++.+++.+++.+. ...+.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence 3444555555554 456799999999999999988752 468999999999999999999999998877653 11111
Q ss_pred HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..++||+|+.+....-...+...+.++|+|||.++++..+.
T Consensus 222 ---------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 222 ---------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 13789999998777677778888889999999999987764
No 81
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=1.3e-13 Score=106.44 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764 8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 87 (188)
Q Consensus 8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 87 (188)
+..++.. +...++.+|||||||+|..+..++... +++|+++|+++.++..+++++.. .+++.+..+|+.+. .
T Consensus 41 ~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~--~ 112 (263)
T PTZ00098 41 TTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK--D 112 (263)
T ss_pred HHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC--C
Confidence 3344433 355677899999999999999998753 57999999999999999987643 35789999987542 1
Q ss_pred HhhcccCCCceeEEEEeC---C--ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 88 LLKYSENEGSFDYAFVDA---D--KDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 88 ~~~~~~~~~~~D~i~id~---~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+ ..++||+|++.. + ..+...+++++.++|||||.+++.+...
T Consensus 113 ~-----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 113 F-----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred C-----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 1 146899999842 1 1356789999999999999999987654
No 82
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=9.7e-13 Score=101.81 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 6 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 6 ~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
|.+...|.++-. ..++++|||+|||+|..++..++.- ..+++++|++|.+++.+++|++.+++...++....+..+.
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 344444554443 3377899999999999999988753 4679999999999999999999998875333333333222
Q ss_pred HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
. ..++||+|+.+.-..-...+...+.++++|||.++++..+
T Consensus 225 ~--------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 225 P--------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred c--------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 1 1369999998865555667888889999999999998765
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.50 E-value=5.4e-13 Score=97.75 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHH
Q 029764 10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL 88 (188)
Q Consensus 10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~ 88 (188)
.+|...+...++++|||+|||+|..+..++.. +.+++++|.++++++.+++++...++.++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 44444444567789999999999999999886 57999999999999999999988777544 8888888765321
Q ss_pred hhcccCCCceeEEEEeCCc------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 89 LKYSENEGSFDYAFVDADK------------------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~------------------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+||+|+.+... .....+++++.+.|+|||.+++.
T Consensus 88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2489999976421 11345789999999999988764
No 84
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.50 E-value=3.6e-14 Score=103.58 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=84.3
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|.|+|||.|.++..+++.+| +..|+++|.|++|++.|++.. .+++|..+|..+.-+ ...
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQP 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCc
Confidence 45667999999999999999999998 999999999999999997764 468999999876532 468
Q ss_pred eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.|++|.++ +..+....+.+++..|.|||++-+.
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 99999885 4456678899999999999999885
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=2.8e-13 Score=105.90 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=80.9
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...++.+|||+|||+|..+.+++.. +.+|+++|+++.+++.++++.+..++ ++++...|.... .+ .+
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~ 183 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QE 183 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cC
Confidence 3456679999999999999999984 67999999999999999999888776 578888876542 11 37
Q ss_pred ceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEE
Q 029764 97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+||+|++.. +......+++++.+.|+|||++++
T Consensus 184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 899998763 223567789999999999999665
No 86
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.49 E-value=4.6e-13 Score=101.61 Aligned_cols=109 Identities=17% Similarity=0.299 Sum_probs=88.5
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..+++.++.+|+.+.. . ..++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~ 121 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F-----PDNS 121 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----CCCC
Confidence 33567999999999999999999875468999999999999999999877666667899999886532 1 1468
Q ss_pred eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
||+|++.. ...+...+++.+.+.|++||.+++.+..
T Consensus 122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 99998763 3446678899999999999999886543
No 87
>PRK08317 hypothetical protein; Provisional
Probab=99.49 E-value=6.2e-13 Score=100.77 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=88.7
Q ss_pred HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764 14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
..+...++.+|||+|||+|..+..++..+.+.++++++|+++.++..++++... ...++.++.+|..+.. +
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~--~----- 83 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP--F----- 83 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC--C-----
Confidence 344566778999999999999999999874478999999999999999987332 2356889888875421 1
Q ss_pred CCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764 94 NEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 135 (188)
Q Consensus 94 ~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 135 (188)
..++||+|++.. +..+...+++.+.++|+|||.+++.+..+.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 128 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWD 128 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 147899999874 335667899999999999999999776543
No 88
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.49 E-value=6.2e-13 Score=107.33 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 4 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
..+++..++..+... .+..+|||+|||+|..++.++...+ +.+++++|+++++++.|++|++..+. +++++++|..
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~ 310 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWF 310 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchh
Confidence 457788888877653 3456999999999999999998766 78999999999999999999988764 6999999986
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+.... ..++||+|+++.+. ..+..+++.+.+.|+|||.+++.
T Consensus 311 e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 311 DTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred ccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 53111 13579999997421 01234566667899999998873
No 89
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.49 E-value=1.1e-12 Score=100.52 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHc----CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 6 PDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 6 ~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
+++..++....... ++.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..++ .+++++|.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 45555665554432 235899999999999999998776 6799999999999999999988765 36888998
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCcc-----------------------------chHHHHHHHHhccCcCeEEEEe
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+.++... .++||+|++|.+.. .+..+++.+.++|++||.+++.
T Consensus 143 ~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 143 YDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 76543321 25799999985311 0235666777999999999875
No 90
>PRK06922 hypothetical protein; Provisional
Probab=99.49 E-value=7.4e-13 Score=111.57 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=88.8
Q ss_pred HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764 13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 92 (188)
Q Consensus 13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 92 (188)
..+....++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|+++....+ .++.++++|+.+....+
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f---- 483 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF---- 483 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----
Confidence 3445566788999999999999999998876 8899999999999999998876544 35788899987632112
Q ss_pred cCCCceeEEEEeCC----------------ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 93 ENEGSFDYAFVDAD----------------KDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 93 ~~~~~~D~i~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..++||+|++... ......+++.+.+.|||||.+++.+...
T Consensus 484 -edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 484 -EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred -CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 2478999986521 1245678899999999999999977544
No 91
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=2.7e-13 Score=112.98 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764 8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 87 (188)
Q Consensus 8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 87 (188)
+..++..+ ...++.+|||||||+|..+..++... +.+++++|+++++++.|+++.. +...+++++++|..+. .
T Consensus 255 te~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~--~ 327 (475)
T PLN02336 255 TKEFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKK--T 327 (475)
T ss_pred HHHHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccC--C
Confidence 34444443 34567799999999999999999865 5799999999999999998765 3345789999997653 1
Q ss_pred HhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 88 LLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 88 ~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+ ..++||+|++.. +..+...+++.+.++|+|||.+++.+...
T Consensus 328 ~-----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 328 Y-----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred C-----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 1 136899999863 34566789999999999999999987654
No 92
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.48 E-value=1.6e-12 Score=95.04 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 4 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
+..-...+..++... .++.++||+.||+|..++..++.- ..+++.||.+++.+...++|++..+..++++++..|+.
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 344445555666556 788999999999999999877652 36999999999999999999999998888999999998
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCcc--c-hHHHHHHHH--hccCcCeEEEEec
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDN 131 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~ 131 (188)
..+..+... ..+||+||+|.+.. . +...++.+. .+|+++|++++..
T Consensus 103 ~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 103 KFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 888766432 57999999997533 2 366777776 7999999999864
No 93
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.48 E-value=1.5e-12 Score=100.84 Aligned_cols=114 Identities=23% Similarity=0.363 Sum_probs=86.6
Q ss_pred HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcc
Q 029764 14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYS 92 (188)
Q Consensus 14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 92 (188)
++....++++||++.|.+|..++..+..- ..++++||.+..+++.+++|++.+++. .+++++.+|+.+.+..+..
T Consensus 117 ~v~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~-- 192 (286)
T PF10672_consen 117 WVRKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK-- 192 (286)
T ss_dssp HHHHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH--
T ss_pred HHHHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc--
Confidence 34456678999999999999999877642 358999999999999999999999986 6799999999998876543
Q ss_pred cCCCceeEEEEeCCc---------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764 93 ENEGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 93 ~~~~~~D~i~id~~~---------~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.++||+|++|.+. .++..++..+.++|+|||.+++....
T Consensus 193 --~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 193 --GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred --CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 4799999999632 34667888889999999998876443
No 94
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.48 E-value=2.5e-13 Score=98.54 Aligned_cols=112 Identities=20% Similarity=0.324 Sum_probs=80.8
Q ss_pred HHHHHHHHHH-HHcCC--CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 7 DAGQLMAMLL-RLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 7 ~~~~~l~~l~-~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
|..+.-+.+. ...++ .++||+|||.|..+..||... .+++++|+++.+++.|++.+... +++++++.+..+
T Consensus 27 E~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~ 100 (201)
T PF05401_consen 27 ERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL---PHVEWIQADVPE 100 (201)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT
T ss_pred HHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCC
Confidence 3334444443 34444 489999999999999999874 49999999999999999988654 379999999977
Q ss_pred HHHHHhhcccCCCceeEEEEeC------CccchHHHHHHHHhccCcCeEEEEecc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
..+ .++||+|++.. +......+++.+...|+|||.+|+...
T Consensus 101 ~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 101 FWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 644 48999999873 123456788999999999999999543
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.48 E-value=9.8e-13 Score=105.51 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=86.1
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
....+||||||+|..+..+|...| +..++++|+++.++..+.+++...++. ++.++++|+...+..+ ..+++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCcee
Confidence 446899999999999999999987 889999999999999999999888875 5999999997765443 257999
Q ss_pred EEEEeCCc---cc------hHHHHHHHHhccCcCeEEEE
Q 029764 100 YAFVDADK---DN------YCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 100 ~i~id~~~---~~------~~~~~~~~~~~L~~gG~lv~ 129 (188)
.|++..+. .. ...+++.+.++|++||.+.+
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 99986421 11 25789999999999998887
No 96
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.47 E-value=4.6e-13 Score=97.91 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
.+...+++.. +...++.++||+|||.|+.+++||+. +-.|+++|.++..++.+++..+..+++ ++....|..+.
T Consensus 16 ~~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~ 89 (192)
T PF03848_consen 16 TPTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF 89 (192)
T ss_dssp ----HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB
T ss_pred CCCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc
Confidence 3455555554 45667889999999999999999996 789999999999999999988887764 88888887543
Q ss_pred HHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEecc
Q 029764 85 LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
.+ .+.||+|+... ..+....+++.+...++|||++++...
T Consensus 90 --~~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 90 --DF------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp --S-------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --cc------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 12 36899998652 345567789999999999999887543
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=5.8e-13 Score=103.43 Aligned_cols=116 Identities=24% Similarity=0.418 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 5 APDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 5 ~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
.+++..++..+.. ..++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....++.++.+|.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 3555666666552 34667999999999999999999886 7899999999999999999987 33345799999987
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCc-----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+... .++||+|+++.+. ..+..+++.+.++|++||.+++.
T Consensus 168 ~~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 168 FEPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 44221 2689999986321 11345677778999999999984
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=6.4e-13 Score=105.80 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
.+..+..|..++...++.+|||+|||+|..++..+.. +.+++++|++++++..+++|++..++.+ +.+.++|+.+.
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l 242 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL 242 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC
Confidence 4556666766777778889999999999998886653 6799999999999999999999988876 88899998763
Q ss_pred HHHHhhcccCCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEe
Q 029764 85 LDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+. ..++||+|++|.+. ..+..+++.+.+.|+|||.+++.
T Consensus 243 -~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 243 -PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred -Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 11 13689999998421 12467889999999999998874
No 99
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.47 E-value=1.2e-12 Score=97.34 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=79.2
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
+....++.+|||+|||+|..+..++...+ +.+++++|+++++++.|++++ +++.+.++|+.+ + + .
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~--~-~-----~ 102 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD--P-F-----K 102 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC--C-C-----C
Confidence 33455777999999999999999988765 789999999999999998864 236777888765 1 1 2
Q ss_pred CCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764 95 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 137 (188)
Q Consensus 95 ~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 137 (188)
.++||+|++... +.....+++++.+.+ ++.+++.+...+..
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSP 148 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCc
Confidence 579999998652 223466778887876 56777777654443
No 100
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.47 E-value=5.8e-12 Score=92.62 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=92.7
Q ss_pred CcHHHHHHHHHHHHH----cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764 4 TAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 79 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
+.|...++...+... .++.++||++||+|..++.+++.. ..+++++|.+++.++.+++|++..++.++++++.+
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~ 106 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRN 106 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEeh
Confidence 345555555554443 467899999999999999998863 24899999999999999999999988778999999
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHH--hccCcCeEEEEec
Q 029764 80 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--KLLKVGGIAVYDN 131 (188)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~--~~L~~gG~lv~~~ 131 (188)
|+.+.+..+... ...||+||.|.+.. .+...++.+. .+|+++|++|+..
T Consensus 107 D~~~~l~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 107 SALRALKFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred hHHHHHHHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 998876554211 23489999997542 3445555554 4799999999863
No 101
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=8.3e-13 Score=102.63 Aligned_cols=116 Identities=20% Similarity=0.385 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHH-HHcCCC-EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 5 APDAGQLMAMLL-RLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 5 ~~~~~~~l~~l~-~~~~~~-~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
.+++..++..+. ...... +|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++.+|.+
T Consensus 93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf 170 (280)
T COG2890 93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF 170 (280)
T ss_pred CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence 567777777743 222222 799999999999999999987 78999999999999999999999998 56666677665
Q ss_pred HHHHHHhhcccCCCceeEEEEeCC---cc-------------------------chHHHHHHHHhccCcCeEEEEec
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+-+ .++||+|+++.+ .. .+..+++.+...|++||++++.-
T Consensus 171 ~~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 171 EPL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 432 358999987631 11 13456677778999999999863
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=1.6e-12 Score=98.12 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=79.4
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..+..+|||+|||+|..+..++.. . ..+++++|+++++++.+++++...+. ++.++.+|..+.++ .++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~ 101 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRP 101 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCC
Confidence 345679999999999999998875 2 35999999999999999999987775 47888888765321 368
Q ss_pred eeEEEEeCCcc------------------------chHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
||+|+++.+.. ....+++.+.++|++||.+++.
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999974211 1345677888999999999873
No 103
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=9.2e-13 Score=104.43 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=82.0
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++++|||||||+|+.+..++...+ ..|+++|+++.++..++......+...++.++.++..+. +. .++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F 190 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF 190 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence 4568999999999999999998643 469999999988865544323223235789999988654 11 3789
Q ss_pred eEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
|+|++-+ +..+...+++++.+.|+|||.+++++....+
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 9999864 3356778999999999999999998765544
No 104
>PLN02823 spermine synthase
Probab=99.46 E-value=1.1e-12 Score=104.06 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=85.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
..++++||.||+|.|..+..+++..+ ..++++||++++.++.+++.+...+ + .++++++.+|+..++...
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------ 173 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------ 173 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence 44678999999999999999888643 5789999999999999999876432 1 368999999999987543
Q ss_pred CCceeEEEEeCCcc---------chHHHHH-HHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~---------~~~~~~~-~~~~~L~~gG~lv~~ 130 (188)
.++||+||+|...+ ...++++ .+.+.|+|||++++.
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 47899999995221 1346787 889999999999875
No 105
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.46 E-value=5e-12 Score=97.85 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=90.5
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
..++++||-||.|.|..+..++++.+ ..+++.||++++.++.+++.+.... . .++++++.+|+.+++...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------ 146 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------ 146 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence 33447999999999999999999875 6799999999999999999987653 2 378999999999998875
Q ss_pred CCceeEEEEeCCcc-c------hHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKD-N------YCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~-~------~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
..+||+|++|.... . ..++++.|.+.|+++|+++...
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 35899999996322 2 3789999999999999999973
No 106
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=1e-12 Score=104.85 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
.+..++..+.. ....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++. .+++.+|..+.
T Consensus 184 gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-- 257 (342)
T PRK09489 184 GSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-- 257 (342)
T ss_pred HHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--
Confidence 34455554443 3345899999999999999998876 779999999999999999999988764 46677776432
Q ss_pred HHhhcccCCCceeEEEEeCCc--------cchHHHHHHHHhccCcCeEEEEe
Q 029764 87 QLLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
. .+.||+|+++.+. .....++..+.+.|+|||.+++.
T Consensus 258 -~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 258 -I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred -c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 1 3689999997532 23467889999999999988663
No 107
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.45 E-value=1.6e-14 Score=95.33 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=62.2
Q ss_pred EEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029764 25 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 104 (188)
Q Consensus 25 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id 104 (188)
||+|||+|..+..++..++ ..+++++|+++.+++.+++++....... ......+..+..... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence 7999999999999999986 8899999999999999999888876432 333343333332211 12599999987
Q ss_pred C---CccchHHHHHHHHhccCcCeEE
Q 029764 105 A---DKDNYCNYHERLMKLLKVGGIA 127 (188)
Q Consensus 105 ~---~~~~~~~~~~~~~~~L~~gG~l 127 (188)
. +..+...+++++.++|+|||.+
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 4 3356778999999999999986
No 108
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.45 E-value=6.3e-13 Score=102.00 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=77.1
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..+..++.. +.+++++|+++++++.++++.. ...++++|..+. + + ..++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~f 104 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATF 104 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcE
Confidence 34679999999999999888764 5799999999999999988642 245778887543 1 1 14689
Q ss_pred eEEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764 99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
|+|+... +..+....+.++.+.|+|||.+++...
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999864 345677889999999999999998743
No 109
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.45 E-value=4.6e-12 Score=100.34 Aligned_cols=103 Identities=12% Similarity=0.054 Sum_probs=81.0
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..++.+|.. +.+|+++|.++++++.|+++++.+++ ++++++++|+.+..... .+.|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~ 241 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP 241 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence 45689999999999999999984 56999999999999999999999888 57999999998765432 3579
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
|+|++|.+.......+......+++++++++..
T Consensus 242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred eEEEECCCCCCccHHHHHHHHHcCCCeEEEEEC
Confidence 999999765543333333445567787777653
No 110
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.44 E-value=1.3e-12 Score=99.06 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=81.5
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
++.+|||+|||+|..+..++...+ ..+++++|++++++..+++... +++.++.+|..+.. + ..++||
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~-----~~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L-----EDSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C-----CCCcee
Confidence 456999999999999999999876 6789999999999998887653 36788889886531 1 146899
Q ss_pred EEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 100 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 100 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+|++... ..+...+++.+.++|++||.+++....
T Consensus 101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 101 LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred EEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9998742 345678899999999999999987543
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.2e-12 Score=100.76 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
-+.-+|..+.....+ +|||+|||.|..++.+++..| ..+++.+|.+..+++.+++|+..++..+. .++.+|..+-.
T Consensus 146 GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v- 221 (300)
T COG2813 146 GSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV- 221 (300)
T ss_pred HHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-
Confidence 344555555554444 899999999999999999987 89999999999999999999999887654 67777776532
Q ss_pred HHhhcccCCCceeEEEEeCCccc--------hHHHHHHHHhccCcCeEEEEe
Q 029764 87 QLLKYSENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.++||+|+++.+.+. .++++....+.|++||.|.+-
T Consensus 222 --------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 222 --------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred --------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 258999999864322 247788889999999977663
No 112
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.43 E-value=2.5e-13 Score=101.95 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=79.3
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-----cEEEEEcchHHHHHHHhhcccCCC
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
++|||+|||+|-.+..||+. +..|++||.++++++.|++.....+..+ ++++.+.++.+. -+
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence 67999999999999999996 6799999999999999999833333222 255555555433 36
Q ss_pred ceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 97 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 97 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.||.|++.- +..+++++++.+.++|+|||.+++.....
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 799999863 45567889999999999999999987554
No 113
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.43 E-value=1.7e-12 Score=95.33 Aligned_cols=162 Identities=16% Similarity=0.223 Sum_probs=93.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
.|.---.++.++...+|+.|+|+|...|.|++++|..+ ...++|++||++..... ++.++..++.+++++++||+
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence 45555667788889999999999999999999987644 34689999999755433 33344456678999999998
Q ss_pred HH--HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEeccccCccccCC--CCCCCCCcccchHH
Q 029764 82 LS--VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP--EEQVPDHFRGSSRQ 155 (188)
Q Consensus 82 ~~--~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~--~~~~~~~~~~~~~~ 155 (188)
.+ .+.+.... .......+|+.|++ +.+..+.++...+++++|+++|+.|.......... ..++.+...
T Consensus 95 ~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~----- 168 (206)
T PF04989_consen 95 IDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNN----- 168 (206)
T ss_dssp SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-----------------
T ss_pred CCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhH-----
Confidence 65 33332111 11245668888875 35677888889999999999999888764433331 122222222
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 029764 156 AILDLNRSLADDPRVQLSH 174 (188)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (188)
-.+++.+++..+++|+...
T Consensus 169 p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 169 PKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp -HHHHHHHHHTTTTEEEET
T ss_pred HHHHHHHHHHHCCCcEecc
Confidence 2677778889999976554
No 114
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.42 E-value=2.2e-12 Score=101.51 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=80.7
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++++|||+|||+|+.+..++...+ ..|+++|+++.++..++..-...+...++.+...+..+. +. ..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~ 188 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYA 188 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCC
Confidence 35568999999999999988887532 479999999998876544322222234678888876543 21 358
Q ss_pred eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
||+||+.+ +..+....+.++.+.|+|||.+++......+
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 99999875 3456678999999999999999998765544
No 115
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=7.1e-12 Score=95.09 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
.+++.......++.+|||+|||+|..+..+++. +.+++++|+++..++.+++++...+. .+.++..+..+.....
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence 344444444556779999999999999988875 56899999999999999998877664 4778888876654221
Q ss_pred hhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764 89 LKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
.++||+|++.. ...+...+++.+.+.|++||.+++...
T Consensus 112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 47899998863 234567788999999999999998643
No 116
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.41 E-value=4.9e-12 Score=95.01 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=85.1
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++. ...+++++.+|+.+.. + ..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~ 106 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNS 106 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCc
Confidence 3467899999999999999999988633799999999999999998875 2356889999886542 1 1368
Q ss_pred eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
||+|++.. +......+++.+.+.|+|||.+++.+..
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998753 3456678899999999999999986654
No 117
>PRK03612 spermidine synthase; Provisional
Probab=99.41 E-value=3.1e-12 Score=107.49 Aligned_cols=107 Identities=19% Similarity=0.320 Sum_probs=84.5
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH--HHhc---CC-CCcEEEEEcchHHHHHHHhhc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY 91 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~~~~~~~d~~~~~~~~~~~ 91 (188)
..++++||+||||+|..+..++++ +...+++++|+|+++++.++++ +... .+ .++++++.+|+.+.+...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 457889999999999999998875 4237999999999999999994 3321 12 257999999998877653
Q ss_pred ccCCCceeEEEEeCCccc--------hHHHHHHHHhccCcCeEEEEec
Q 029764 92 SENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.++||+|++|..... ..++++.+.+.|+|||.+++..
T Consensus 371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 478999999953221 2368899999999999999864
No 118
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.40 E-value=7.7e-12 Score=94.12 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=79.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|||+|||+|..+..++.. +.+++++|++++++..|++++...+..+++++.++|+.+. .++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence 345789999999999999999874 5699999999999999999988777656799999998643 268
Q ss_pred eeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
||+|++.. ........+..+.+++++++++.+.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99998642 1233456788888888887777764
No 119
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.40 E-value=4.6e-12 Score=102.60 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=81.1
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...++.+|||||||+|..+..+++.. +.+|+++|+++++++.++++.+. + .+++...|..+. .+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--l--~v~~~~~D~~~l----------~~ 227 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--L--PVEIRLQDYRDL----------NG 227 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--C--eEEEEECchhhc----------CC
Confidence 34577899999999999999999864 57999999999999999998743 2 377777876432 36
Q ss_pred ceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 97 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 97 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+||.|+.... ..++..+++.+.++|+|||.+++.....
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 8999986531 2345788999999999999999976543
No 120
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=3.8e-12 Score=96.11 Aligned_cols=121 Identities=19% Similarity=0.327 Sum_probs=93.6
Q ss_pred CcHHHHHHHHHHHHHc------CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE
Q 029764 4 TAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~------~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
-.||+.+++.+.+... ++..++|+|||+|..++.++..++ .+++++||.++.++..|.+|..++++.+++.++
T Consensus 126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 3678888888877533 344799999999999999999998 899999999999999999999999999999888
Q ss_pred Ec----chHHHHHHHhhcccCCCceeEEEEeCC-----------------------------ccchHHHHHHHHhccCcC
Q 029764 78 ES----EALSVLDQLLKYSENEGSFDYAFVDAD-----------------------------KDNYCNYHERLMKLLKVG 124 (188)
Q Consensus 78 ~~----d~~~~~~~~~~~~~~~~~~D~i~id~~-----------------------------~~~~~~~~~~~~~~L~~g 124 (188)
+- |..+..+-+ .+++|+++.+.+ ...+..++..+.+.|++|
T Consensus 205 ~~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 205 HNIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred ecccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 54 433332221 578999986521 011234556667999999
Q ss_pred eEEEEec
Q 029764 125 GIAVYDN 131 (188)
Q Consensus 125 G~lv~~~ 131 (188)
|.+.+.-
T Consensus 279 g~~~le~ 285 (328)
T KOG2904|consen 279 GFEQLEL 285 (328)
T ss_pred CeEEEEe
Confidence 9999864
No 121
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.40 E-value=4e-12 Score=100.93 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=80.1
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
++.+|||+|||+|..+..+++..+ ..+++++|.++++++.++++... .+++++.+|+.+. + + ..++||
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFD 180 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYAD 180 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCcee
Confidence 556999999999999999988775 67999999999999999987542 3578899998653 1 1 146899
Q ss_pred EEEEeC---CccchHHHHHHHHhccCcCeEEEEec
Q 029764 100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+|++.. ...+....++++.++|+|||.+++.+
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999864 23355678999999999999988754
No 122
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.40 E-value=4.7e-12 Score=90.28 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=77.9
Q ss_pred HHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 8 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 8 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
..+++..+.. ..++.+|||+|||.|..+..++.. +.+++++|+++.+++. .+......+.....
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~- 73 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPP- 73 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHH-
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhh-
Confidence 4456666664 567789999999999999999765 4599999999999886 11222222222211
Q ss_pred HHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 87 QLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
. ..++||+|++.. +..+...+++.+.++|||||++++.....
T Consensus 74 ~------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 74 F------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp C------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred c------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1 158999999875 34467889999999999999999987764
No 123
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.39 E-value=4.2e-12 Score=95.00 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=75.4
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-----------CCCCcEEEEEcchHHHHHHH
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----------GVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~ 88 (188)
++.+||++|||.|..+++||.. +..|+++|+++.+++.+.+..... .-..+++++++|..+.-...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 5579999999999999999985 789999999999999764321100 00235888999987653221
Q ss_pred hhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 89 LKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.++||.|+-. .++.....+++.+.++|+|||.+++....
T Consensus 111 ------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 111 ------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 2568888643 23344567899999999999976665433
No 124
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=6.1e-12 Score=94.18 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=87.7
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCC-----CCEEEEEeCCchhHHHHHHHHHhcCCCCc--EEEEEcchHHHHHHHhhcc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKYS 92 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~ 92 (188)
+..++||++||+|..+..+.++.+. +.+|+.+|++|++++.+++...+.++... +.++.+|+.+. + +
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F---- 173 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F---- 173 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C----
Confidence 3458999999999999999998863 28999999999999999999877777644 88999999664 2 2
Q ss_pred cCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEec
Q 029764 93 ENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 93 ~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+..+||...+.. +..+.+..+++++++|||||.+.+-+
T Consensus 174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 357899887764 56788999999999999999888743
No 125
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.38 E-value=2.4e-11 Score=98.28 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHH-HHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE
Q 029764 3 GTAPDAGQLMAM-LLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 78 (188)
Q Consensus 3 ~~~~~~~~~l~~-l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 78 (188)
++.+...+-|.. +.. ..++.+|||+|||+|..++.++.. +.+++++|+++++++.|++|.+.+++. +++++.
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~ 287 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAA 287 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 344555544433 322 245679999999999999999864 569999999999999999999998875 799999
Q ss_pred cchHHHHHHHhhcccCCCceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764 79 SEALSVLDQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+|+.+.+... ..+||+|++|.+... ...+++.+. .++|++++++.
T Consensus 288 ~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 288 LDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 9998776432 256999999976543 344555554 57888887775
No 126
>PTZ00146 fibrillarin; Provisional
Probab=99.37 E-value=9.1e-12 Score=96.33 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=77.7
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
.+.+..+|||+|||+|+.+..++....+.++|+++|+++++.+...+..... +++.++.+|+..... ... ..+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~~---~~~ 201 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YRM---LVP 201 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hhc---ccC
Confidence 3567779999999999999999998865689999999987665444433221 468888999754211 100 135
Q ss_pred ceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764 97 SFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 97 ~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+|+||+|....+ ...++.++.+.|||||.+++.
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 7999999975433 334556788999999999983
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.36 E-value=6.5e-12 Score=97.53 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=72.8
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCC--CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
+..+|||+|||+|..+..++...+.. ..++++|+++.+++.|+++. +++.+.++|+.+. + + ..++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCc
Confidence 44689999999999999998876532 47999999999999988753 3578888887653 1 1 2478
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
||+|+....+ ..++++.+.|+|||.+++.
T Consensus 152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 152 LDAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 9999875433 2357788999999999975
No 128
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.36 E-value=2.3e-11 Score=100.52 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=83.0
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..++.++.. ..+++++|+++++++.|++|++.+++. +++++.+|+.+.+....- ...+|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~---~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW---ALGGF 368 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh---hcCCC
Confidence 45579999999999999999986 359999999999999999999988875 599999999776533210 13579
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
|+|++|.+.....+.++.+.+ ++++++++++.
T Consensus 369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 999999766555666666655 68888877753
No 129
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.36 E-value=3.8e-11 Score=86.87 Aligned_cols=121 Identities=18% Similarity=0.222 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 6 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 6 ~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
.-...+..++.. ...+.++||+.+|+|..++..++.. ..+++.||.+.+.+...++|++..++..+.+++..|+...
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 333444455555 3677899999999999999877753 4689999999999999999999999888899999999977
Q ss_pred HHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHH----hccCcCeEEEEecc
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM----KLLKVGGIAVYDNT 132 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~----~~L~~gG~lv~~~~ 132 (188)
++.+.. .++||+||+|.+.. ........+. ..|+|+|.+++...
T Consensus 106 L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 106 LKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 776632 23599999997544 2211222222 67999999999643
No 130
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.36 E-value=3.4e-11 Score=99.32 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=82.9
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..++.+++. ..+|+++|+++++++.|++|+..+++. +++++.+|+.+.++.+... ..+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~---~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWA---GQIP 363 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhc---CCCC
Confidence 45579999999999999999986 358999999999999999999988874 6999999998776553211 3579
Q ss_pred eEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764 99 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 99 D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|+|++|.+... ...+++.+. .+++++.+++.
T Consensus 364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 99999976544 456666654 47888877664
No 131
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.35 E-value=5.9e-12 Score=91.51 Aligned_cols=102 Identities=19% Similarity=0.313 Sum_probs=79.9
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCCceeEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
.+||+|||+|..-.+.-. .+..+|+++|+++.+-+.+.+.++.... .+++ |.+++..+. +++. +++||.|
T Consensus 79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~s~DtV 149 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DGSYDTV 149 (252)
T ss_pred ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cCCeeeE
Confidence 689999999987443321 1589999999999999999998887654 3466 888887554 4553 5899999
Q ss_pred EEe---CCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 102 FVD---ADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 102 ~id---~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+.. +.+++..+.+++..++|+|||.+++-+..
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 654 57788889999999999999999985433
No 132
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.34 E-value=1.1e-11 Score=93.16 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=74.9
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--------------CCcEEEEEcchHHH
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSV 84 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~d~~~~ 84 (188)
.+..+||++|||.|..+++||.. +.+|++||+++.+++.+.+ +.++ ..++++.++|..+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence 34569999999999999999985 7899999999999997643 1221 24688899998765
Q ss_pred HHHHhhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEE
Q 029764 85 LDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+.. .+.||+|+-. .++.....+++.+.++|+|||.+++
T Consensus 110 ~~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 110 TAAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred Cccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3221 3678999832 3445567889999999999986443
No 133
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.34 E-value=2.1e-11 Score=90.04 Aligned_cols=101 Identities=25% Similarity=0.373 Sum_probs=83.9
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
.+||||||.|...+.+|...| +..++|+|+....+..+.+.+...++. |+.++++|+...+..+.+ .+++|.|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheEE
Confidence 899999999999999999988 899999999999999999999988875 699999999988887753 47999998
Q ss_pred EeC---Ccc--------chHHHHHHHHhccCcCeEEEE
Q 029764 103 VDA---DKD--------NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 103 id~---~~~--------~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+.. ++. -..++++.+.+.|++||.+.+
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 863 221 136799999999999998877
No 134
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.34 E-value=3.6e-11 Score=94.65 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=78.8
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..+..+++.++...+++++|++++++..+++++......-++.++++|..+..+-.... .....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCe
Confidence 3557999999999999999999876457999999999999999998765331234777899986643221100 00133
Q ss_pred eEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764 99 DYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 99 D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+++++. .......+++.+.+.|+|||.+++.
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3445442 2334567899999999999999874
No 135
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.33 E-value=4.1e-11 Score=90.10 Aligned_cols=103 Identities=23% Similarity=0.371 Sum_probs=88.7
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
..+||||||.|...+.+|...| +..++|||+....+..+.+.+.+.++. |+.++++|+.+++..+.+ .++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeEE
Confidence 5899999999999999999987 889999999999999999999999976 799999999999888753 3689988
Q ss_pred EEe---CCcc--c------hHHHHHHHHhccCcCeEEEEe
Q 029764 102 FVD---ADKD--N------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 102 ~id---~~~~--~------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
++. .++. + ...+++.+.+.|++||.+.+.
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 775 3321 1 357899999999999999873
No 136
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.33 E-value=4.9e-11 Score=90.21 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=74.2
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..+..++.. +.+++++|++++++..|++++...+..+++.+..+|.. .. .++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCc
Confidence 45679999999999999999875 45799999999999999999988777667999999832 11 3789
Q ss_pred eEEEEeCC-----ccchHHHHHHHHhccCcCeEEEE
Q 029764 99 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|+|++... .......++.+.++++.++++.+
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99987532 12334566777666655554443
No 137
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=1.8e-11 Score=102.10 Aligned_cols=105 Identities=25% Similarity=0.311 Sum_probs=79.6
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+..+|||+|||+|..+..++.. ..+++++|+++++++.+++.. +..++++++++|+.+....+ ..++|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~~~~f 104 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----SDGSV 104 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----CCCCE
Confidence 34569999999999999999986 459999999999998776532 23357899999885321111 24689
Q ss_pred eEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEecccc
Q 029764 99 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 99 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
|+|++.... .....+++++.+.|+|||.+++.+..+
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 999987421 224678899999999999999977654
No 138
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.33 E-value=5.5e-11 Score=89.62 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=82.6
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+.. ++.+..+|+.+..... .++||
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D 114 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFD 114 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCcc
Confidence 3679999999999999988875 457999999999999999988776642 5888888887653221 36899
Q ss_pred EEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764 100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
+|++.. ...+...+++.+.+.|++||.+++...
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999863 345667889999999999999988653
No 139
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.33 E-value=1.9e-11 Score=93.36 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=85.5
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC---CCcEEEEEcchHHHHHHHhhcccC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
..++++||-||.|.|..+..+++..+ ..++++||+++..++.+++.+..... .++++++.+|+..++.+.
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------ 146 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------ 146 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence 34689999999999999999987643 57999999999999999998775432 378999999999988764
Q ss_pred CC-ceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764 95 EG-SFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~-~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.. +||+|++|...+ ...++++.+.+.|+++|++++..
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 34 899999996321 13689999999999999999864
No 140
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.33 E-value=2.2e-11 Score=91.00 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=72.8
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~ 95 (188)
..++.+|||+|||+|..+..+++...+.++|++||+++ + .+. ++++++++|+.+. ++++.+. ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLER-VGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence 45677999999999999999999876568999999988 1 122 3488999997653 2222111 124
Q ss_pred CceeEEEEeCCcc-------c-------hHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
++||+|+++..+. + ....++.+.++|+|||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6899999875211 1 135678889999999999996
No 141
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.29 E-value=3e-11 Score=89.22 Aligned_cols=102 Identities=24% Similarity=0.315 Sum_probs=78.4
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++..|+|..||.|..++.+|+..+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.++.+ ...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~ 169 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK 169 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence 56778999999999999999998644 679999999999999999999999999999999999988765 278
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+|-|+++.+... ..+++.+..++++||++.+
T Consensus 170 ~drvim~lp~~~-~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 170 FDRVIMNLPESS-LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EEEEEE--TSSG-GGGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECChHHH-HHHHHHHHHHhcCCcEEEC
Confidence 999999875443 4788999999999998753
No 142
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.29 E-value=5.4e-11 Score=86.05 Aligned_cols=111 Identities=12% Similarity=-0.016 Sum_probs=82.9
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...++.+|||+|||+|..+..+++. ..+++++|+++.++..+++++.. .++++++++|+.+.... ..
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~ 76 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KL 76 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------cc
Confidence 3455679999999999999999986 46999999999999999998854 24799999999765211 24
Q ss_pred ceeEEEEeCCccchHHHHHHHHh--ccCcCeEEEEeccccCccccC
Q 029764 97 SFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAV 140 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~g~~~~ 140 (188)
+||.|+.+.+.....+.+..+.+ .+.++|++++..-........
T Consensus 77 ~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~ 122 (169)
T smart00650 77 QPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAK 122 (169)
T ss_pred CCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCC
Confidence 69999998655444566666654 345889998876554443333
No 143
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.28 E-value=1.3e-10 Score=96.02 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=94.7
Q ss_pred HHHHHHHH--HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 9 GQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 9 ~~~l~~l~--~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
+.+...++ ...++.+|||++++.|.-|..+|..+...+.+++.|+++..++..++++++.|+. ++.+...|+.....
T Consensus 100 S~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~ 178 (470)
T PRK11933 100 SMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGA 178 (470)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhh
Confidence 33444444 4567889999999999999999998876689999999999999999999999986 48888888865433
Q ss_pred HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.+ ...||.|++|++.+. ..++++.+++.|||||.||.+....
T Consensus 179 ~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 179 AL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 32 367999999964321 1457788889999999999876664
No 144
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.27 E-value=9.2e-11 Score=86.26 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHH
Q 029764 11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQL 88 (188)
Q Consensus 11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~ 88 (188)
+.+.+....++.+|||+|||+|..+..++....+.++++++|+++.+ .. ++++++++|..+. +..+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence 33444455778899999999999999998877546799999999864 11 3477887776432 1111
Q ss_pred hhcccCCCceeEEEEeCCc--------c------chHHHHHHHHhccCcCeEEEEe
Q 029764 89 LKYSENEGSFDYAFVDADK--------D------NYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~--------~------~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
... ...++||+|++++.. . .....++.+.+.|+|||.+++.
T Consensus 91 ~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 RER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 100 023579999987421 1 1256788899999999999985
No 145
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.27 E-value=1.3e-10 Score=75.86 Aligned_cols=99 Identities=20% Similarity=0.323 Sum_probs=77.8
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
+++|+|||.|..+..++. . ...+++++|.+++.+..+++.....+ ..++.++.+|..+.... ..++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEE
Confidence 489999999999999887 2 36899999999999998886433333 35688999998776431 147899999
Q ss_pred EeCCc----cchHHHHHHHHhccCcCeEEEEe
Q 029764 103 VDADK----DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 103 id~~~----~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
++... .....+++.+.+.+++||.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98643 34577889999999999999875
No 146
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.26 E-value=2.4e-10 Score=92.47 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
..+|||++||+|..++.++...+ ..+|+++|+++++++.+++|++.+++. +++++++|+...+.. ...||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence 35899999999999999998754 468999999999999999999988875 477899999776542 257999
Q ss_pred EEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 101 AFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|++|.. ....++++.+.+.+++||++.+.
T Consensus 129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 999964 44567888878889999999986
No 147
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.26 E-value=1.2e-10 Score=84.56 Aligned_cols=109 Identities=23% Similarity=0.288 Sum_probs=73.0
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--CCCcEEEEEcchHHHH-HHHhhccc
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~~~ 93 (188)
...++++|||+|||+|..++.++.... ..+|+..|.++ .++..+.|++.++ ...++.+..-|..+.. ....
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---- 115 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---- 115 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----
Confidence 356778999999999999999998753 67999999988 9999999999876 4566777776543322 2222
Q ss_pred CCCceeEEEEe---CCccchHHHHHHHHhccCcCeEEEEec
Q 029764 94 NEGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 94 ~~~~~D~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+..+||+|+.. ........+++.+..+|+++|.+++..
T Consensus 116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 24689999865 245677889999999999999866653
No 148
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.24 E-value=2e-10 Score=80.88 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=96.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
.++++-.++.|...+.-..+.-|||+|.|+|..+..++++..+...+++||.++++....++.+ +.+.++.||+
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda 103 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDA 103 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccch
Confidence 3577788888888888888889999999999999998887766789999999999999888765 2467999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEE
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+.-..+.+. .++.||.|++..+ .....++++.+...|..||.++-
T Consensus 104 ~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 104 FDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 8764344332 3567999998743 33446788999999999998875
No 149
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.24 E-value=4.6e-10 Score=90.50 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=84.6
Q ss_pred CcHHH-HHHHHHHHHHcC--CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764 4 TAPDA-GQLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80 (188)
Q Consensus 4 ~~~~~-~~~l~~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 80 (188)
+.+.. ..++.++..... +.++||++||+|..++.+++.. .+|+++|.++++++.+++|+..+++. +++++.+|
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d 262 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMS 262 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECC
Confidence 34433 344444444332 3579999999999999999864 49999999999999999999988875 79999999
Q ss_pred hHHHHHHHhhccc---------CCCceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764 81 ALSVLDQLLKYSE---------NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 81 ~~~~~~~~~~~~~---------~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+.+.++.+..... ...+||+||+|.+... ....++.+.+ ++++++++
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 9887765432100 0125899999976443 3444455543 57766664
No 150
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=5.2e-11 Score=92.02 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCCEEEEEcccchHH----HHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHH------hcC----------------
Q 029764 20 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQITAIDVNRETYEIGLPIIK------KAG---------------- 69 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~----~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~------~~~---------------- 69 (188)
++.+|+++|||+|.. ++.+++..+. +.+|+++|+++++++.|++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456999999999964 4455554432 4689999999999999997531 000
Q ss_pred ----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEec
Q 029764 70 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 70 ----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+.++++|.+.|..+... ..++||+|++.. ........++.+.+.|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 12357888888765321 147899999853 12344578999999999999999853
No 151
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.23 E-value=9.3e-11 Score=86.08 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=95.2
Q ss_pred CcHHHHHHHHHHHHHcCC-CE-EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 4 TAPDAGQLMAMLLRLVNA-KK-TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~-~~-vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
..++..-+++.|....+. .+ |||||||+|.-+.++|..+| ..+....|.+++.....++++...++++-...+.-|+
T Consensus 7 aeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 7 AERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 345566677777765443 34 99999999999999999998 8899999999999899999988888765444455554
Q ss_pred HHHHHHHhhc-ccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764 82 LSVLDQLLKY-SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLWG 135 (188)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 135 (188)
.+....+... ....++||+||+. ........+|+.+.++|++||.+++-..+..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 3321111000 0013589999975 2345667889999999999999999887753
No 152
>PHA03411 putative methyltransferase; Provisional
Probab=99.22 E-value=5.2e-10 Score=85.82 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=73.0
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
....+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++ ++++++++|..+... ..+|
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kF 127 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKF 127 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCC
Confidence 3456999999999999998887654 579999999999999998863 258899999876531 3689
Q ss_pred eEEEEeCCccc-----------------------hHHHHHHHHhccCcCeEEEEe
Q 029764 99 DYAFVDADKDN-----------------------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 99 D~i~id~~~~~-----------------------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|+|+++.+... ...++.....+|+|+|.+.+.
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99999742111 124445556789999977664
No 153
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.22 E-value=5.8e-11 Score=84.76 Aligned_cols=119 Identities=21% Similarity=0.360 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHc-------CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764 8 AGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80 (188)
Q Consensus 8 ~~~~l~~l~~~~-------~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 80 (188)
..+++.++.... .+.+|||+|||.|.....|++.-= .+.++++|+++.+++.|+...++.+.++.++|.+.|
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D 126 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD 126 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence 445666665432 234899999999999999987532 356999999999999999999999999889999998
Q ss_pred hHHHHHHHhhcccCCCceeEEE---------EeC--CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 81 ALSVLDQLLKYSENEGSFDYAF---------VDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~D~i~---------id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..+- ++ ..++||+|+ +.+ .......+++.+.++|+|||++++....|
T Consensus 127 I~~~--~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 127 ITDP--DF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ccCC--cc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 8653 21 135677664 221 12223457788889999999999987776
No 154
>PLN02672 methionine S-methyltransferase
Probab=99.22 E-value=2.7e-10 Score=101.58 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHHHc----CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC----------
Q 029764 5 APDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---------- 70 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---------- 70 (188)
.+++..++..+.... ++.+|||+|||+|..++.++...+ ..+++++|+++++++.|++|...+++
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 567777777743321 245899999999999999999876 67999999999999999999987643
Q ss_pred -----CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC----------------c---------------------c
Q 029764 71 -----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----------------K---------------------D 108 (188)
Q Consensus 71 -----~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~----------------~---------------------~ 108 (188)
.++++++++|..+..... ..+||+|+.+.+ + .
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~ 251 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQ 251 (1082)
T ss_pred ccccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCC
Confidence 247999999987654221 236999986521 0 0
Q ss_pred c----hHHHHHHHHhccCcCeEEEEec
Q 029764 109 N----YCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 109 ~----~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+ +..++.++.++|+|||.+++.-
T Consensus 252 dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 252 FGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 0 1345566678999999999853
No 155
>PRK06202 hypothetical protein; Provisional
Probab=99.22 E-value=5.5e-11 Score=90.24 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=72.9
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
...++.+|||+|||+|..+..++...+ ++.+++++|+++++++.|+++.... ++.+...++... +.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------ 125 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------ 125 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc------
Confidence 335667999999999999998886432 2469999999999999998875433 345555544322 11
Q ss_pred CCCceeEEEEeCCc---cc--hHHHHHHHHhccCcCeEEEEecccc
Q 029764 94 NEGSFDYAFVDADK---DN--YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 94 ~~~~~D~i~id~~~---~~--~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..++||+|++.... .+ ...+++.+.++++ |.+++.+...
T Consensus 126 ~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 126 EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 14789999987421 12 3468888888887 5666666554
No 156
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.22 E-value=1.9e-10 Score=88.86 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=80.0
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
-..+++|||||||.|+.+..++..- ...|+++|+++..+...+-.-.-.|....+..+ ....+.++. .+.
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-------~~~ 182 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-------LGA 182 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-------cCC
Confidence 4577899999999999999998863 357999999988766544332223333333333 223333333 378
Q ss_pred eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCccc
Q 029764 98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 138 (188)
Q Consensus 98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 138 (188)
||+||+-+ +..++...+.++...|++||.+|+.....+|..
T Consensus 183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE 226 (315)
T ss_pred cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence 99999875 556778899999999999999999888776643
No 157
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.21 E-value=5e-10 Score=90.25 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=86.8
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
.+|||..||+|..++.++...+...+|+++|+++++++.+++|++.++.. +++++++|+...+... ...||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence 48999999999999999987542468999999999999999999888765 5889999998887654 3679999
Q ss_pred EEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 102 FVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 102 ~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
++|. .....++++.+.+.+++||++.+.
T Consensus 119 dlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 9997 445568999999999999999986
No 158
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.3e-10 Score=87.81 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
+.+.++ ++++..++.+|+|-|+|+|+.+.++++...+.+++++.|......+.|.+.++..++.+++++.+.|....
T Consensus 93 Dia~I~-~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~-- 169 (314)
T KOG2915|consen 93 DIAMIL-SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS-- 169 (314)
T ss_pred cHHHHH-HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC--
Confidence 344444 45688999999999999999999999999889999999999999999999999999999999999987652
Q ss_pred HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+.. ....+|.||+|... +...+..+++.||.+|.-++
T Consensus 170 GF~~---ks~~aDaVFLDlPa--Pw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 170 GFLI---KSLKADAVFLDLPA--PWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred Cccc---cccccceEEEcCCC--hhhhhhhhHHHhhhcCceEE
Confidence 1111 14789999999633 34555666677887774433
No 159
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=1.4e-10 Score=87.61 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=69.9
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..+..+++.. +.+|+++|+++++++.|++.. .++++|+.+. + + ..++|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~l-p-~-----~d~sf 111 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEAL-P-F-----RDKSF 111 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhC-C-C-----CCCCE
Confidence 356799999999999999998865 469999999999999988641 3467777543 2 2 25799
Q ss_pred eEEEEeC---CccchHHHHHHHHhccCcCe
Q 029764 99 DYAFVDA---DKDNYCNYHERLMKLLKVGG 125 (188)
Q Consensus 99 D~i~id~---~~~~~~~~~~~~~~~L~~gG 125 (188)
|+|++.. +..+....++++.+.|||..
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 9999764 34567889999999999953
No 160
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.2e-09 Score=87.73 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
...+++...++...++.+|||..++.|.=|..+|..+.. +..|+++|.++..++..+++++++|..+ +...+.|+...
T Consensus 142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~ 220 (355)
T COG0144 142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRL 220 (355)
T ss_pred CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccc
Confidence 345566677778888899999999999999999998874 3456999999999999999999999876 77778776544
Q ss_pred HHHHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..... ....||.|++|++.+. ..++++.++++|||||.||.+.+..
T Consensus 221 ~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 221 AELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 33321 1235999999953211 2357788889999999999987765
No 161
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.6e-10 Score=91.42 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHHHHH----HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE
Q 029764 2 MGTAPDAGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~----~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
.++++...+-|...+ ...+..+++|+.||.|..++.+|.. ..+|+++|+++++++.|++|++.+++.+ ++|.
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~ 346 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFI 346 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEE
Confidence 344555555554433 3445679999999999999999965 5699999999999999999999999876 9999
Q ss_pred EcchHHHHHHHhhcccCCCceeEEEEeCCccchH-HHHHHHHhccCcCeEEEEe
Q 029764 78 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 78 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~ 130 (188)
.+++.++.+.+.. ...+|.|++|.+-.... .+++.+ ..++|..++.++
T Consensus 347 ~~~ae~~~~~~~~----~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 347 AGDAEEFTPAWWE----GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred eCCHHHHhhhccc----cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 9999998877531 35889999998765555 555655 555666665554
No 162
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.19 E-value=1.3e-09 Score=87.54 Aligned_cols=120 Identities=11% Similarity=0.089 Sum_probs=84.3
Q ss_pred CcHHHH-HHHHHHHHHcC--CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764 4 TAPDAG-QLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80 (188)
Q Consensus 4 ~~~~~~-~~l~~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 80 (188)
..+... .++..+....+ +.++||+|||+|..++.+++.. .+|+++|.++++++.|++|+..+++. +++++.+|
T Consensus 178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d 253 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMS 253 (353)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcC
Confidence 334433 44445444332 3479999999999999999874 39999999999999999999998875 59999999
Q ss_pred hHHHHHHHhh-------c--ccCCCceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764 81 ALSVLDQLLK-------Y--SENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 81 ~~~~~~~~~~-------~--~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+.+.++.... . +.....||+||+|.+... ....++.+.+ ++++++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 9887764211 0 000123899999976443 3455555543 67777765
No 163
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.17 E-value=1.8e-10 Score=86.40 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cC----------CCCc
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG----------VDHK 73 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~----------~~~~ 73 (188)
.|...+++.. ....++.+||..|||.|....+||.. +.+|+++|+++.+++.+.+.... .. -..+
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 3445555555 34556669999999999999999986 77999999999999988432111 10 1246
Q ss_pred EEEEEcchHHHHHHHhhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCC
Q 029764 74 INFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH 148 (188)
Q Consensus 74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~ 148 (188)
+++.++|.++.-+.. .++||+|+=. .++.....+.+.+.++|+|||.+++-...++.... ..++
T Consensus 99 i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~----~GPP- 167 (218)
T PF05724_consen 99 ITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM----EGPP- 167 (218)
T ss_dssp EEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS----SSSS-
T ss_pred eEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC----CCcC-
Confidence 889999998753321 2589999733 35667788999999999999994443333322111 1111
Q ss_pred cccchHHHHHHHHHHhhcCCCeEEEEe
Q 029764 149 FRGSSRQAILDLNRSLADDPRVQLSHV 175 (188)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 175 (188)
......++.+.+. +.|+...+
T Consensus 168 ----f~v~~~ev~~l~~--~~f~i~~l 188 (218)
T PF05724_consen 168 ----FSVTEEEVRELFG--PGFEIEEL 188 (218)
T ss_dssp --------HHHHHHHHT--TTEEEEEE
T ss_pred ----CCCCHHHHHHHhc--CCcEEEEE
Confidence 2222566666665 56665544
No 164
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.3e-10 Score=84.74 Aligned_cols=119 Identities=16% Similarity=0.207 Sum_probs=89.5
Q ss_pred CCCcHHHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCC---------
Q 029764 2 MGTAPDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGV--------- 70 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~--------- 70 (188)
++...-.+..|..|-. ..++.+.||+|+|+|+.+..++..... +...++||.-++.++.+++++.+.-.
T Consensus 63 iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 63 ISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred EcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence 3445566777777653 667779999999999999999966643 34459999999999999999876531
Q ss_pred CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 71 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 71 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+.+..+|.....++ ..+||.|++.+..+ +.-+.+...|++||.|++.
T Consensus 143 ~~~l~ivvGDgr~g~~e-------~a~YDaIhvGAaa~---~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYAE-------QAPYDAIHVGAAAS---ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCceEEEeCCccccCCc-------cCCcceEEEccCcc---ccHHHHHHhhccCCeEEEe
Confidence 14577889998776543 58999999986443 3345567788999988874
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.17 E-value=1.5e-09 Score=84.96 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
+.....+...+...++.+|||||||+|..+..++.. ..+++++|+++++++.+++++...+..++++++++|+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~- 97 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT- 97 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-
Confidence 334444444445667789999999999999999885 4589999999999999999998776556899999999764
Q ss_pred HHHhhcccCCCceeEEEEeCCc
Q 029764 86 DQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~ 107 (188)
. ...||.|+.+.+.
T Consensus 98 -~-------~~~~d~VvaNlPY 111 (294)
T PTZ00338 98 -E-------FPYFDVCVANVPY 111 (294)
T ss_pred -c-------ccccCEEEecCCc
Confidence 1 2578999887644
No 166
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.17 E-value=9.4e-11 Score=86.54 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=87.4
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
+..++||+|+|.|+.|..++... -.+|..+|+.+.+++.|++.+.... ....++++....++.|. ..+||
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD 124 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD 124 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence 34589999999999999876543 3599999999999999998765421 23356777777777654 47999
Q ss_pred EEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc-cCcc-ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEE
Q 029764 100 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL-WGGT-VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL 172 (188)
Q Consensus 100 ~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (188)
+|++-- .-.+..+++.+|...|+|+|+||+.+-. ..+. +.+++++. +++..+.|.+.+.. .++..
T Consensus 125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsS-------vTRs~~~~~~lF~~-AGl~~ 196 (218)
T PF05891_consen 125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSS-------VTRSDEHFRELFKQ-AGLRL 196 (218)
T ss_dssp EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTE-------EEEEHHHHHHHHHH-CT-EE
T ss_pred EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCe-------eecCHHHHHHHHHH-cCCEE
Confidence 999873 2345678999999999999999995544 3443 44444331 22334555444433 46555
Q ss_pred EEe
Q 029764 173 SHV 175 (188)
Q Consensus 173 ~~l 175 (188)
..-
T Consensus 197 v~~ 199 (218)
T PF05891_consen 197 VKE 199 (218)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 167
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.17 E-value=1e-10 Score=83.25 Aligned_cols=77 Identities=23% Similarity=0.310 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
..|+|..||.|..++.+|+.+. +|++||++|..++.++.|++-.|..++++++++|..+.++.+.. ...+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence 3699999999999999999854 99999999999999999999999999999999999987665421 1128999
Q ss_pred EEeC
Q 029764 102 FVDA 105 (188)
Q Consensus 102 ~id~ 105 (188)
|++.
T Consensus 74 FlSP 77 (163)
T PF09445_consen 74 FLSP 77 (163)
T ss_dssp EE--
T ss_pred EECC
Confidence 9984
No 168
>PHA03412 putative methyltransferase; Provisional
Probab=99.15 E-value=6.3e-10 Score=83.60 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
|++..++.+.. ....+.+|||+|||+|..++.+++..+ +..+|+++|+++.+++.|+++.. ++.++.+|.
T Consensus 35 TP~~iAr~~~i--~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~ 106 (241)
T PHA03412 35 TPIGLARDFTI--DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADA 106 (241)
T ss_pred CCHHHHHHHHH--hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcch
Confidence 45556565532 233467999999999999999988643 25699999999999999998752 478889988
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCc---------------cchHHHHHHHHhccCcCeEEEEec
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADK---------------DNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~---------------~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.... + .++||+|+.+.+. .....+++.+.+++++|+.|+-..
T Consensus 107 ~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 107 LTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred hccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 6431 1 3689999987421 113457778888888887744333
No 169
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=6.5e-10 Score=87.87 Aligned_cols=110 Identities=21% Similarity=0.178 Sum_probs=93.8
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
.-....+.+|+|..+|.|..++.+|..-. .+|+++|+||.+++..++|+..+++.+.+..+++|+.+..+.+
T Consensus 183 a~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------ 254 (341)
T COG2520 183 AELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------ 254 (341)
T ss_pred HhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------
Confidence 33455688999999999999999999743 3499999999999999999999999988999999999887653
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+.+|-|++.... ....++..+.+.+++||.+.+.....
T Consensus 255 -~~aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 255 -GVADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred -ccCCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEeccc
Confidence 789999997644 34678888999999999999987664
No 170
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=4e-10 Score=83.91 Aligned_cols=110 Identities=20% Similarity=0.318 Sum_probs=79.1
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC----------------------------
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------------------------- 69 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------------------------- 69 (188)
...++.+|||||.+|..++.+|+.+. ...+.|+|+++..+..|+++++..-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 44677899999999999999999997 6789999999999999999876421
Q ss_pred ------CCCcEEEEE----cchHHHHHHHhhcccCCCceeEEEEe---------CCccchHHHHHHHHhccCcCeEEEEe
Q 029764 70 ------VDHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVD---------ADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 70 ------~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~D~i~id---------~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+++++.+.. .+..+++ .. ....||+|++- .+-+....+|..++++|.|||++|+.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL-DM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh-hh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111111 1122233 11 25789999753 12345678999999999999999997
Q ss_pred cccc
Q 029764 131 NTLW 134 (188)
Q Consensus 131 ~~~~ 134 (188)
---|
T Consensus 209 PQpW 212 (288)
T KOG2899|consen 209 PQPW 212 (288)
T ss_pred CCch
Confidence 5555
No 171
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1e-09 Score=79.01 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=78.7
Q ss_pred CCcHHHHHHHHHHHHH---cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764 3 GTAPDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 79 (188)
Q Consensus 3 ~~~~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
.|++..+..+-+.+.. ..+++|+|+|||+|..++..+..- ..+|+++|+++++++.+++|..+ +..++.+..+
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~ 100 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVA 100 (198)
T ss_pred CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEc
Confidence 4566666666666643 355689999999999998877653 36999999999999999999988 3467999999
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhcc
Q 029764 80 EALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLL 121 (188)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L 121 (188)
|..++ .+.+|.++++.+. ..-.++++.+.+.-
T Consensus 101 dv~~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 101 DVSDF----------RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS 137 (198)
T ss_pred chhhc----------CCccceEEECCCCccccccCCHHHHHHHHHhh
Confidence 99765 5789999988532 12245666555543
No 172
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.14 E-value=1.8e-09 Score=85.18 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=69.1
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC----CCcEEEEEcchHHHHHHHhhcccCC
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+. ..++++...|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 5679999999999999999974 57999999999999999999876421 13578888886432 3
Q ss_pred CceeEEEEeCC----cc-chHHHHHHHHhccCcCeEEEE
Q 029764 96 GSFDYAFVDAD----KD-NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 96 ~~~D~i~id~~----~~-~~~~~~~~~~~~L~~gG~lv~ 129 (188)
++||+|++... +. ....++..+.+ +.+||+++.
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 78999986422 11 12334555543 466776664
No 173
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.13 E-value=9.6e-10 Score=80.21 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCC--------EEEEEeCCchhHHHHHHHHHhcCCCCcE
Q 029764 3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------QITAIDVNRETYEIGLPIIKKAGVDHKI 74 (188)
Q Consensus 3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~--------~v~~iD~~~~~~~~a~~~~~~~~~~~~~ 74 (188)
+..+..+..|-.++...++..++|..||+|...+..+....... ++++.|+++++++.+++|++..++...+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 45678888888888888888999999999999988766554222 3999999999999999999999998889
Q ss_pred EEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-----------cchHHHHHHHHhccCcCeEEEEe
Q 029764 75 NFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 75 ~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+.+.|+.+.- + ..+++|.|+.|.+. ..+..+++.+.+++++..++++.
T Consensus 91 ~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999987653 1 14789999999532 22456678888899996666654
No 174
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.12 E-value=1e-08 Score=80.07 Aligned_cols=149 Identities=23% Similarity=0.296 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
....+...++...++.+|||++++.|.=+..++..+...+++++.|++++.+...++++++.|..+ +.....|+....+
T Consensus 72 ~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 72 ESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHH
T ss_pred cccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccc
Confidence 344555666677788899999999999999999998767999999999999999999999999764 7777788877655
Q ss_pred HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhcc----CcCeEEEEeccccCcc
Q 029764 87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLL----KVGGIAVYDNTLWGGT 137 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L----~~gG~lv~~~~~~~g~ 137 (188)
... ...||.|++|++.+. ..+.++.+.+.+ +|||.+|..-....-
T Consensus 151 ~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~- 224 (283)
T PF01189_consen 151 KKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP- 224 (283)
T ss_dssp HHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG-
T ss_pred ccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH-
Confidence 442 346999999953211 135778888999 999999987655411
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEEeecC
Q 029764 138 VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 178 (188)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 178 (188)
++. ...++.| +..+|+++...++..
T Consensus 225 ----eEN---------E~vV~~f---l~~~~~~~l~~~~~~ 249 (283)
T PF01189_consen 225 ----EEN---------EEVVEKF---LKRHPDFELVPIPLP 249 (283)
T ss_dssp ----GGT---------HHHHHHH---HHHSTSEEEECCESS
T ss_pred ----HHH---------HHHHHHH---HHhCCCcEEEecccc
Confidence 111 1225555 445788876655433
No 175
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=81.33 Aligned_cols=104 Identities=15% Similarity=0.245 Sum_probs=81.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
..++.+|||.++|-|+.++..++. ++ +|+++|.+|..+..|+-|-=..++ +.+++++.||+.+.++.+ ++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D 203 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DD 203 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cc
Confidence 345779999999999999988875 54 999999999999988755211111 235899999999999887 46
Q ss_pred CceeEEEEeCCcc------chHHHHHHHHhccCcCeEEEE
Q 029764 96 GSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 96 ~~~D~i~id~~~~------~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+||+|+-|.+.- -..++.+++.+.|++||.++-
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 7899999985321 135788999999999999864
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.10 E-value=1.5e-09 Score=85.64 Aligned_cols=83 Identities=13% Similarity=0.252 Sum_probs=65.5
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEE-cchHHHHHHHhhcccCCCc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~ 97 (188)
+..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++.. .+..+....... ..+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence 346899999999998888887765 789999999999999999999998 7888898865 444444433211 1468
Q ss_pred eeEEEEeCC
Q 029764 98 FDYAFVDAD 106 (188)
Q Consensus 98 ~D~i~id~~ 106 (188)
||+|++..+
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999999853
No 177
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.10 E-value=8.1e-10 Score=86.85 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=96.4
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-ch
Q 029764 3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA 81 (188)
Q Consensus 3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~ 81 (188)
+..|..++.|..|++..++..|||-.||||...+..... +.+++++|++..++.-|+.|++..++.+ ..+... |+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da 255 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDA 255 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccc
Confidence 467999999999999999999999999999998887664 7899999999999999999999988765 444444 77
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEec
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
... + + ...++|.|..|.+. .-+.++++.+.+.|++||++++.-
T Consensus 256 ~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 256 TNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred ccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 554 2 3 13469999999531 125678889999999999999853
No 178
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.09 E-value=2.3e-09 Score=80.52 Aligned_cols=108 Identities=8% Similarity=0.014 Sum_probs=79.1
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH------h-----cCCCCcEEEEEcchHHHHHHH
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK------K-----AGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~------~-----~~~~~~~~~~~~d~~~~~~~~ 88 (188)
++.+||..|||.|..+.+||.. +.+|+++|+++.+++.+.+... . .--...+++.++|.++.-+.-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 4479999999999999999986 7799999999999998755210 0 001246899999998752110
Q ss_pred hhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 89 LKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+ ..+.||+|+-. .+++....+.+.+.++|+|||.+++-....
T Consensus 120 -~---~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 -N---NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred -c---ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 0 13689998643 345566789999999999999887765433
No 179
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.08 E-value=1.7e-09 Score=78.92 Aligned_cols=96 Identities=23% Similarity=0.290 Sum_probs=81.3
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
+++|||||.|.-++.+|-..| +.+++.+|.....+...++....++++ +++++++.+.+ .. ...+||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence 799999999999999999987 899999999999999999999999997 59999999977 11 258999999
Q ss_pred EeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 103 VDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 103 id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.-+.. ....+++.+.+++++||.+++
T Consensus 121 aRAv~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 121 ARAVA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred eehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence 98744 557888999999999999886
No 180
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=1.8e-09 Score=78.35 Aligned_cols=99 Identities=12% Similarity=0.204 Sum_probs=72.8
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++.+|||+|||.|....++... ++.+.+++|++++.+..+.++ .+.++++|..+.+..+. +++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~-----d~s 75 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFP-----DQS 75 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCC-----CCC
Confidence 456679999999999999888775 378999999999987766553 36789999988877763 689
Q ss_pred eeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecc
Q 029764 98 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 98 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
||.|++... ...+...++++.+.-+ .+++.|.|.
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 999998753 2344556666654422 345555553
No 181
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.05 E-value=3.5e-10 Score=83.63 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=96.0
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
-+++||+|||+|-.+..+-.. ..+++++|+|..|+++|.++ ++-+ ++.+.++..+++.. +...||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~-----~~er~DL 191 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL-----TQERFDL 191 (287)
T ss_pred cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc-----cCCcccc
Confidence 469999999999998887665 34899999999999988875 2222 45667776665543 3578999
Q ss_pred EEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCcc---ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEE
Q 029764 101 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT---VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH 174 (188)
Q Consensus 101 i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (188)
|.... .......++-....+|++||.+.|+--...+. +..|.. |+ ...+.+.+......+++...
T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~------Ry---AH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ------RY---AHSESYVRALLAASGLEVIA 262 (287)
T ss_pred hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhh------hh---ccchHHHHHHHHhcCceEEE
Confidence 97532 23345667777889999999999964332221 111111 11 11345555555556776654
Q ss_pred e-----------ecCCceEEEEEc
Q 029764 175 V-----------ALGDGITICRRI 187 (188)
Q Consensus 175 l-----------p~~~G~~~~~~~ 187 (188)
+ |+..++.|++|+
T Consensus 263 ~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 263 IEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred eecccchhhcCCCCCCceEEEecC
Confidence 4 777888888875
No 182
>PRK00536 speE spermidine synthase; Provisional
Probab=99.05 E-value=2.3e-09 Score=82.20 Aligned_cols=100 Identities=9% Similarity=0.065 Sum_probs=78.7
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
...+|++||=||.|-|..+..++++ + .+|+.||+|++.++.+++.+.... + .+|++++.. +.+.
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~----- 135 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL----- 135 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc-----
Confidence 4567899999999999999999997 3 399999999999999999655432 2 367887751 1111
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
..++||+|++|.. ...++++.+.+.|+|||+++...
T Consensus 136 ~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 136 DIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence 1368999999963 33678899999999999999854
No 183
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.8e-08 Score=72.05 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=79.5
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
.++.++|||||+|..+.++++.+.++..+.++|++|++.+..++....++. +++.++.|..+.+. .++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence 478899999999999999999887788999999999999999998877664 47788888877654 37899
Q ss_pred EEEEeCCc--------------------cc----hHHHHHHHHhccCcCeEEEEec
Q 029764 100 YAFVDADK--------------------DN----YCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 100 ~i~id~~~--------------------~~----~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+++.+.+. .+ ...++.++-.+|.|.|++.+.-
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 99876310 01 2344555567889999887753
No 184
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.02 E-value=4.7e-09 Score=78.03 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=83.2
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc-ee
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD 99 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~D 99 (188)
+++++|||+|.|.-++.+|-..| +.+++-+|.....+...++.....+++ |++++++.+.++-++ .. ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence 68999999999999999997777 778999999999999999999999986 599999999776432 23 99
Q ss_pred EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+|.+-+ ......+.+.+.+++++||.+++
T Consensus 138 ~vtsRA-va~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 138 VVTSRA-VASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEEeeh-ccchHHHHHHHHHhcccCCcchh
Confidence 999876 33557788899999999998764
No 185
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.02 E-value=1.3e-09 Score=83.25 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=79.9
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
...+.++|+|||+|.|..+..+++.+| +.+++..|. |+.++.+++ .++++++.+|..+. + +
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~-------P 157 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---L-------P 157 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---C-------S
T ss_pred cccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhh---h-------c
Confidence 344567999999999999999999998 899999999 889988887 56899999998732 2 3
Q ss_pred ceeEEEEeC-----CccchHHHHHHHHhccCcC--eEEEEeccccC
Q 029764 97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVG--GIAVYDNTLWG 135 (188)
Q Consensus 97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~ 135 (188)
.+|++++.. +.+....+++++.+.|+|| |.|++.+.+.+
T Consensus 158 ~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 158 VADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp SESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred cccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 399999874 2334567899999999999 99999988863
No 186
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=5.7e-10 Score=83.08 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=77.5
Q ss_pred CEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCcee
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFD 99 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D 99 (188)
.+|||+|||.|.....+.+..+. +..++++|.+|.+++..+++..-.. .++...+.|...- +... ...+++|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~----~~~~svD 146 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEP----PEEGSVD 146 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCC----CCcCccc
Confidence 37999999999999999987762 2789999999999999998743222 3455445444221 1111 2356788
Q ss_pred EEEEe-----CCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 100 YAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 100 ~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+|.+. .++......++++.++|||||.|++.|.-.
T Consensus 147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 77432 356667889999999999999999987553
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.01 E-value=6.4e-09 Score=80.21 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
.+...+.+...+...++.+|||||||+|..+..+++. ..+++++|+++++++.+++++.. .++++++++|+.+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~ 87 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV 87 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC
Confidence 4455555555556667789999999999999999986 45899999999999999988754 24799999998764
Q ss_pred HHHHhhcccCCCceeEEEEeCCc
Q 029764 85 LDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
. ...||.|+...+.
T Consensus 88 ~---------~~~~d~Vv~NlPy 101 (258)
T PRK14896 88 D---------LPEFNKVVSNLPY 101 (258)
T ss_pred C---------chhceEEEEcCCc
Confidence 1 2457988887543
No 188
>KOG2730 consensus Methylase [General function prediction only]
Probab=99.00 E-value=1.8e-09 Score=79.33 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=73.4
Q ss_pred HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764 14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
......++..|+|..||.|..++.+|... ..|++||++|..+..|+.|++-.|.+++++|++||.++....+...
T Consensus 88 ~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~-- 162 (263)
T KOG2730|consen 88 RVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD-- 162 (263)
T ss_pred HHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh--
Confidence 33344477799999999999999999874 5999999999999999999999999999999999999988776432
Q ss_pred CCCceeEEEEeCC
Q 029764 94 NEGSFDYAFVDAD 106 (188)
Q Consensus 94 ~~~~~D~i~id~~ 106 (188)
...+|++|..++
T Consensus 163 -K~~~~~vf~spp 174 (263)
T KOG2730|consen 163 -KIKYDCVFLSPP 174 (263)
T ss_pred -hheeeeeecCCC
Confidence 345889998753
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.99 E-value=1.6e-08 Score=78.56 Aligned_cols=101 Identities=16% Similarity=0.072 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
.+...+.+...+...++.+|||+|||+|..+..++... .+++++|+++++++.+++++.. ++++++++|+.+.
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 34444444444455677899999999999999999874 3999999999999999987642 4799999998764
Q ss_pred HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHh
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 119 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~ 119 (188)
- +. .-.+|.|+.+.+.....+++..+..
T Consensus 100 ~--~~-----~~~~~~vv~NlPY~iss~ii~~~l~ 127 (272)
T PRK00274 100 D--LS-----ELQPLKVVANLPYNITTPLLFHLLE 127 (272)
T ss_pred C--HH-----HcCcceEEEeCCccchHHHHHHHHh
Confidence 1 10 0115777777554444555555543
No 190
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.96 E-value=6.8e-09 Score=81.02 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=68.0
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++..++|++||.|+.+..+++.+++.++|+++|.++++++.+++.+.. .+++++++++..++...+.+. ..++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~---~~~v 91 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG---LGKV 91 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC---CCcc
Confidence 4567999999999999999999987678999999999999999998765 368999999998775544210 2379
Q ss_pred eEEEEeCCc
Q 029764 99 DYAFVDADK 107 (188)
Q Consensus 99 D~i~id~~~ 107 (188)
|.|++|...
T Consensus 92 DgIl~DLGv 100 (296)
T PRK00050 92 DGILLDLGV 100 (296)
T ss_pred CEEEECCCc
Confidence 999998543
No 191
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.94 E-value=4e-08 Score=75.45 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=95.2
Q ss_pred HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764 12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 90 (188)
Q Consensus 12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (188)
+..+....++.+||||.||.|.-.+......+. ...|...|.++..++..++.++..|+.+.++|.++|+++... +..
T Consensus 127 i~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~ 205 (311)
T PF12147_consen 127 IARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA 205 (311)
T ss_pred HHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc
Confidence 334445568889999999999998888887774 368999999999999999999999999878999999988522 211
Q ss_pred cccCCCceeEEEEeCCc------cchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764 91 YSENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTLWGGT 137 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 137 (188)
. ...++++++.+-. .-....+..+...+.|||++|..+-.|+-.
T Consensus 206 l---~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 206 L---DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred c---CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 1 4678999887632 224456778889999999999988666443
No 192
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.93 E-value=4.1e-09 Score=77.86 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=65.8
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|||+|||+|..+..++... ...++++|+++++++.+++. +++++++|+.+.++.+ ..++|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf 76 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF 76 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence 356799999999999998887653 45789999999998887641 3678888876533222 14689
Q ss_pred eEEEEeC---CccchHHHHHHHHhccCc
Q 029764 99 DYAFVDA---DKDNYCNYHERLMKLLKV 123 (188)
Q Consensus 99 D~i~id~---~~~~~~~~~~~~~~~L~~ 123 (188)
|+|++.. +..+...+++++.+.+++
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 9999874 334566777777776654
No 193
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.92 E-value=1.4e-09 Score=81.01 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCC-EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764 11 LMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 89 (188)
Q Consensus 11 ~l~~l~~~~~~~-~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (188)
+...++...+.. .++|+|||+|..+..+|.++. +|+++|+++++++.|++.....-+.....+...+..+.+.
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--- 96 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--- 96 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC---
Confidence 444555555555 899999999988888888765 9999999999999998764332221222333333333321
Q ss_pred hcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCe-EEEE
Q 029764 90 KYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVY 129 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG-~lv~ 129 (188)
..++.|+|.+.. +.-+...++..+.++||+.| .+.+
T Consensus 97 ----~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 97 ----GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ----CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 157999998763 23356789999999999888 5544
No 194
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.91 E-value=2.6e-08 Score=76.60 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
+...+-+...+...++.+|||||||+|..+..++...+ +++++|+++++++.+++++.. .++++++++|+.+..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC
Confidence 33333333344556778999999999999999998753 699999999999999987743 357999999987642
Q ss_pred HHHhhcccCCCcee---EEEEeCCccchHHHHHHHHh
Q 029764 86 DQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK 119 (188)
Q Consensus 86 ~~~~~~~~~~~~~D---~i~id~~~~~~~~~~~~~~~ 119 (188)
. ..+| +|+.+.+..-..+.+..+..
T Consensus 89 ~---------~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 89 L---------PDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred h---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 1 2344 66666544334455555543
No 195
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.90 E-value=1.8e-08 Score=76.41 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
..+.+..-+..-+...++..|||||.|+|..|..+.+. +.+|+++|++|.++...++.++..+.+++.+++++|...
T Consensus 42 kNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 42 KNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred cCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 34555555555566778889999999999999999986 669999999999999999999888878899999999876
Q ss_pred HHHHHhhcccCCCceeEEEEeCCc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
. +...||.++.+.+.
T Consensus 119 ~---------d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 119 T---------DLPRFDGCVSNLPY 133 (315)
T ss_pred C---------CCcccceeeccCCc
Confidence 5 23679999986543
No 196
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.88 E-value=3.6e-08 Score=82.76 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
....+||||||.|.....+|...| +..++++|+....+..+.+.....++. |+.++.+|+..+...+ ..+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence 356899999999999999999987 889999999999988888888887875 5888888875444443 246799
Q ss_pred EEEEe---CCcc--c------hHHHHHHHHhccCcCeEEEEe
Q 029764 100 YAFVD---ADKD--N------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 100 ~i~id---~~~~--~------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.|++. .++. + ...+++.+.+.|++||.+.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 99876 3321 1 357899999999999988773
No 197
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.87 E-value=9.3e-09 Score=80.65 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=80.1
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..+++.|||+|||+|-.+.+.|++. ..+|+++|.+ +++..|++.+..+++.+.++++++...++ .++ .++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence 5688999999999999999999975 4699999985 56699999999999999999999998775 331 378
Q ss_pred eeEEEEeC--CccchHHHHHHHH----hccCcCeEEEEe
Q 029764 98 FDYAFVDA--DKDNYCNYHERLM----KLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~--~~~~~~~~~~~~~----~~L~~gG~lv~~ 130 (188)
.|+|+... ..-.+...++... +.|+|||.+.-+
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 99998762 2222233333332 799999998654
No 198
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.84 E-value=2.7e-08 Score=82.08 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=76.6
Q ss_pred CCEEEEEcccchHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 21 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.+.|+++|||+|-.+...+++. ....+|++||-++.+....++.+...+..++|+++++|..++-. ..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence 4689999999999987776654 12469999999999888888877888888999999999987622 368
Q ss_pred eeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.|+|+.. +..+...+.+....+.|||+|.++=.
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 9999865 23344556778888999999988743
No 199
>PRK04148 hypothetical protein; Provisional
Probab=98.84 E-value=3.7e-08 Score=67.85 Aligned_cols=104 Identities=12% Similarity=0.079 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 8 AGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 8 ~~~~l~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
.+++|..-....++.+++|||||+|. .+..|++. +..|+++|++++.++.++++ .++++.+|.++--.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 34445444444456789999999997 66677753 67999999999988877765 26788898876433
Q ss_pred HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+ -..+|+|+.--++......+-.+.+. -|.-+++.
T Consensus 73 ~~------y~~a~liysirpp~el~~~~~~la~~--~~~~~~i~ 108 (134)
T PRK04148 73 EI------YKNAKLIYSIRPPRDLQPFILELAKK--INVPLIIK 108 (134)
T ss_pred HH------HhcCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 44 26899999887777766666666553 34445443
No 200
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.83 E-value=2.4e-08 Score=77.02 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=69.6
Q ss_pred CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-hcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.|++|+=|||| --.+++.+++....+..++++|+++++...+++.++ ..++..++.|+.+|..+...+ ...
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-------LKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-------ccc
Confidence 35699999999 456777787654336789999999999999999888 667788899999998765333 368
Q ss_pred eeEEEEeCCcc----chHHHHHHHHhccCcCeEEEEec
Q 029764 98 FDYAFVDADKD----NYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
||+||+.+-.. .-.+.++++.+.+++|+.+++-.
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 99999986443 77889999999999999999863
No 201
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.81 E-value=5.7e-08 Score=73.91 Aligned_cols=137 Identities=19% Similarity=0.194 Sum_probs=84.8
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhC---C-CCCEEEEEeCCc--------------------------hhHHHHHHHHHh
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVNR--------------------------ETYEIGLPIIKK 67 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~---~-~~~~v~~iD~~~--------------------------~~~~~a~~~~~~ 67 (188)
..-+..|+|+|+..|.+++.++..+ . .+.++++.|.-. -..+..++++.+
T Consensus 72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 3455689999999999887765432 1 246788988411 123445566666
Q ss_pred cCC-CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-ccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCC
Q 029764 68 AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV 145 (188)
Q Consensus 68 ~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~ 145 (188)
.++ .+++.++.|...+.++... ...+-++.+|++ .+.....++.+++.|.+||+|+++|...+|
T Consensus 152 ~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g--------- 217 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG--------- 217 (248)
T ss_dssp TTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH---------
T ss_pred cCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH---------
Confidence 664 3689999999988877642 467888888875 355678899999999999999999977633
Q ss_pred CCCcccchHHHHHHHHHHhhcCCCeEEEEeecCC
Q 029764 146 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 179 (188)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 179 (188)
+.+++.+|.+.- +....+.+++.
T Consensus 218 -------cr~AvdeF~~~~----gi~~~l~~id~ 240 (248)
T PF05711_consen 218 -------CRKAVDEFRAEH----GITDPLHPIDW 240 (248)
T ss_dssp -------HHHHHHHHHHHT----T--S--EE-SS
T ss_pred -------HHHHHHHHHHHc----CCCCccEEecC
Confidence 677777775553 44444556554
No 202
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.79 E-value=1e-07 Score=70.85 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=73.4
Q ss_pred EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029764 24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 103 (188)
Q Consensus 24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~i 103 (188)
|.||||-.|+.++++++.-. ..+++++|+++..+..|+++++..++.++++++.+|.++.++. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999998754 5689999999999999999999999999999999999886653 234799988
Q ss_pred eC-CccchHHHHHHHHhccCcCeEEEEe
Q 029764 104 DA-DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 104 d~-~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+ .-.-..++++.....++....+|+.
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence 75 3344567777777777776677775
No 203
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.79 E-value=5.9e-08 Score=78.02 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcC--CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764 9 GQLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 86 (188)
Q Consensus 9 ~~~l~~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (188)
.+++.+.....+ +..+||+.||+|..++.+|... .+|++||.++++++.|++|++.+++. +++|+.+++.++..
T Consensus 183 ~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhH
Confidence 344444444333 2389999999999999999874 59999999999999999999999985 59999988766433
Q ss_pred HHhh---------cccCCCceeEEEEeCCccchH-HHHHHH
Q 029764 87 QLLK---------YSENEGSFDYAFVDADKDNYC-NYHERL 117 (188)
Q Consensus 87 ~~~~---------~~~~~~~~D~i~id~~~~~~~-~~~~~~ 117 (188)
.+.. .......+|+|++|.+..... ..++.+
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 2210 000123689999997654433 344444
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.2e-07 Score=70.09 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=73.7
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhccc
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSE 93 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~ 93 (188)
.+...++.+|||||+|.|..|..+++. ..+|+++|+|+..+...++.+. ..++++++++|+... ++.+
T Consensus 25 ~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l----- 93 (259)
T COG0030 25 AANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL----- 93 (259)
T ss_pred hcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh-----
Confidence 445556779999999999999999997 4589999999999999998875 345899999999875 2221
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCc--CeEEEE
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKV--GGIAVY 129 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~--gG~lv~ 129 (188)
..++.|+.+.+..-..+++..+...-.. ..++++
T Consensus 94 --~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 94 --AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred --cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 1678888886544444554444432222 455554
No 205
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.77 E-value=2.4e-08 Score=73.66 Aligned_cols=95 Identities=22% Similarity=0.219 Sum_probs=70.2
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+.-|||||||+|-++..+... +-..+++|++|.|++.|.+.- . . -.++.+|--+-++- ..++||.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e--~--e--gdlil~DMG~Glpf------rpGtFDg 115 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE--L--E--GDLILCDMGEGLPF------RPGTFDG 115 (270)
T ss_pred CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh--h--h--cCeeeeecCCCCCC------CCCccce
Confidence 568999999999998887663 668999999999999999732 1 1 14666666544432 3689998
Q ss_pred EEEe--------CC------ccchHHHHHHHHhccCcCeEEEEe
Q 029764 101 AFVD--------AD------KDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 101 i~id--------~~------~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+++- ++ +.....||..+...|++|+.-|+.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 8743 11 122456788899999999999886
No 206
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.71 E-value=1e-07 Score=75.85 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=70.0
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC---------CCCcEEEEEcchHH-HHHHHh
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALS-VLDQLL 89 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~~~~~~~d~~~-~~~~~~ 89 (188)
++.+|||+|||-|.-..-.... .-.+++|+|++.+.++.|++.+.... ..-...++.+|... .+....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5679999999988755554443 24699999999999999999883321 11245678888764 222221
Q ss_pred hcccCCCceeEEEEeC-------CccchHHHHHHHHhccCcCeEEEEe
Q 029764 90 KYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.. ...+||+|=+-. ..+....++.++...|+|||+++..
T Consensus 140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 125899996542 2233456899999999999999874
No 207
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.70 E-value=4.2e-07 Score=66.88 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=84.7
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+||++|-|.|-....+-+. + -.+-+.||.+|+.++..++.- ..-..++-+..+--.+.++.+. ++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~-p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-P-PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-C-CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence 67789999999999887776554 3 346677899999988777642 2223678888898888888875 4679
Q ss_pred eEEEEeCCc---cchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764 99 DYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLWGGT 137 (188)
Q Consensus 99 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 137 (188)
|-|+-|... ++...+.+.+.++|||+|++-+.|.+-.++
T Consensus 171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~ 212 (271)
T KOG1709|consen 171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADN 212 (271)
T ss_pred ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccch
Confidence 999999753 445567788889999999999888775443
No 208
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.70 E-value=2.8e-07 Score=66.61 Aligned_cols=150 Identities=18% Similarity=0.133 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-- 83 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-- 83 (188)
--.++.++-..+|..|+|+|+-.|.+++++|...- ...+|+++|++-..+..+-.. .+++.++.+++.+
T Consensus 58 ~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpa 131 (237)
T COG3510 58 MWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPA 131 (237)
T ss_pred HHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHH
Confidence 34456677788999999999999999999987542 135899999876654322211 2469999998765
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764 84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 161 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
+..+.... +...+--+++.|.+ +.+..+.++...++|..|-++++.|...++... +..++...... .+++.
T Consensus 132 i~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~~~p~~~g~gP-----~~AVe 204 (237)
T COG3510 132 IAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-PVLPWRFGGGP-----YEAVE 204 (237)
T ss_pred HHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-cccchhcCCCh-----HHHHH
Confidence 22221111 01122234445544 445667778888999999999999988877643 22222111111 56666
Q ss_pred HHhhcCC-CeE
Q 029764 162 RSLADDP-RVQ 171 (188)
Q Consensus 162 ~~~~~~~-~~~ 171 (188)
.+++++| +|+
T Consensus 205 ~ylr~~p~~yE 215 (237)
T COG3510 205 AYLREFPQDYE 215 (237)
T ss_pred HHHHhCCcccc
Confidence 6777778 454
No 209
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.66 E-value=6.6e-08 Score=69.27 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=60.3
Q ss_pred EEEeCCchhHHHHHHHHHhc--CCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCc
Q 029764 49 TAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 123 (188)
Q Consensus 49 ~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~ 123 (188)
+++|+++++++.|+++.... +..++++++++|+.+. + + ..++||+|++.. ...+....++++.++|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P-F-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C-C-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 48999999999998776532 2235799999998764 2 1 246899998764 345678899999999999
Q ss_pred CeEEEEeccc
Q 029764 124 GGIAVYDNTL 133 (188)
Q Consensus 124 gG~lv~~~~~ 133 (188)
||.+++.+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999887654
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.2e-07 Score=65.59 Aligned_cols=94 Identities=20% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCCcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE
Q 029764 2 MGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 2 ~~~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
++++|+.+.-|-..++ ...++.++|+|||+|..+..++ .+....++++|++|++++.+++|.+...+ ++.+.
T Consensus 26 Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlL 101 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLL 101 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--hhhee
Confidence 3456666655544444 3467899999999999885443 44467899999999999999999888765 35788
Q ss_pred EcchHHHHHHHhhcccCCCceeEEEEeCC
Q 029764 78 ESEALSVLDQLLKYSENEGSFDYAFVDAD 106 (188)
Q Consensus 78 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~ 106 (188)
+.|..+.... .+.||.++++.+
T Consensus 102 qcdildle~~-------~g~fDtaviNpp 123 (185)
T KOG3420|consen 102 QCDILDLELK-------GGIFDTAVINPP 123 (185)
T ss_pred eeeccchhcc-------CCeEeeEEecCC
Confidence 8888775433 488999999853
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.61 E-value=1.9e-07 Score=73.89 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=82.0
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhC------CCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEE
Q 029764 3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH-KIN 75 (188)
Q Consensus 3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~ 75 (188)
-|+....++|..++...++.+|+|.+||+|.....+...+ ....+++|+|+++..+..++-++.-.+... +..
T Consensus 29 ~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 29 YTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp ---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred ehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 3678889999999987777899999999999888877643 126799999999999999998876555433 246
Q ss_pred EEEcchHHHHHHHhhcccCCCceeEEEEeCCcc------------------------chHHHHHHHHhccCcCeEEEE
Q 029764 76 FIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 76 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+..+|++...... ....||+|+...+.. ....++..+...|++||.+.+
T Consensus 109 i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 109 IIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp EEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 7888876431110 136899999873211 012578889999999997433
No 212
>PRK10742 putative methyltransferase; Provisional
Probab=98.59 E-value=5.9e-07 Score=68.08 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCC--EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc------CC--CCcEEEEEc
Q 029764 10 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------GV--DHKINFIES 79 (188)
Q Consensus 10 ~~l~~l~~~~~~~--~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~--~~~~~~~~~ 79 (188)
+.|..-+...++. +|||+.+|+|..++.++.. +++|+++|-+|......+++++.. +. ..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4444444445555 8999999999999999986 778999999999999999998875 22 257999999
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeCC
Q 029764 80 EALSVLDQLLKYSENEGSFDYAFVDAD 106 (188)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~D~i~id~~ 106 (188)
|+.+++... ..+||+||+|..
T Consensus 153 da~~~L~~~------~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI------TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC------CCCCcEEEECCC
Confidence 999988764 357999999953
No 213
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.4e-07 Score=75.14 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=88.8
Q ss_pred CCcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE
Q 029764 3 GTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 78 (188)
Q Consensus 3 ~~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 78 (188)
+++...++.|+..+. ...++.++|+.||+|.+++.+|+. ..+|++||++|+.+..|+.|...+|.+ |.+|++
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~ 437 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIV 437 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCcc-ceeeee
Confidence 455566777766654 556678999999999999999986 459999999999999999999999987 599999
Q ss_pred cchHHHHHHHhhcccCCCcee-EEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764 79 SEALSVLDQLLKYSENEGSFD-YAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~D-~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|-+.+.++.+... ..++-+ ++++|.+... ...++..+...-++.-.+.+.
T Consensus 438 gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvS 489 (534)
T KOG2187|consen 438 GQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVS 489 (534)
T ss_pred cchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEE
Confidence 9888888776533 112445 5677754333 345556665544455544443
No 214
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.58 E-value=1.4e-07 Score=71.13 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=58.6
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHH-HHHHHHhcCCCCcEE-EEEcchHHH-HHHHhhcccCC
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENE 95 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~~~-~~~~d~~~~-~~~~~~~~~~~ 95 (188)
.+++++||+|||+|..+..+++. . ..+|+++|+++.++.. .+++ .++. +...+.... ...+. .+.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~ 141 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDF 141 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCc
Confidence 35679999999999999999986 2 4689999999977764 2222 1221 222222211 01110 013
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
..+|++|+.. ...+..+.++|++ |.+++
T Consensus 142 ~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 142 ATFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 5778888753 3357888899999 76654
No 215
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.55 E-value=2.3e-06 Score=67.78 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=83.4
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH--HHhcC---C-CCcEEEEEcchHHHHHHHhhc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKAG---V-DHKINFIESEALSVLDQLLKY 91 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~---~-~~~~~~~~~d~~~~~~~~~~~ 91 (188)
.....++|-+|.|-|--...+.+ +|.-.+|+-+|.+|++++.++.+ +.+.+ + .++++++..|+.+.+..-
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a--- 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA--- 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence 34567899999999998888876 45457999999999999999843 33322 2 378999999999988764
Q ss_pred ccCCCceeEEEEeCC-ccc-------hHHHHHHHHhccCcCeEEEEec
Q 029764 92 SENEGSFDYAFVDAD-KDN-------YCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 92 ~~~~~~~D~i~id~~-~~~-------~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
...||.|++|.. +.. -.++...+.+.|+++|.+|+..
T Consensus 363 ---~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 ---ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ---cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 469999999953 221 2467788889999999999864
No 216
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.51 E-value=5.5e-06 Score=63.01 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=84.8
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
+..++||||+|.|..+..++..+. +|++.|.++.|....++ .| .+.+. ..+. .+ ...+||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg----~~vl~--~~~w-~~------~~~~fD 153 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KG----FTVLD--IDDW-QQ------TDFKFD 153 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CC----CeEEe--hhhh-hc------cCCceE
Confidence 556899999999999999998876 79999999988654443 34 33332 2222 11 146899
Q ss_pred EEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCcc--------ccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029764 100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT--------VAVPEEQVPDHFRGSSRQAILDLNRSLADDP 168 (188)
Q Consensus 100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (188)
+|-+-. ....+..+++.+.+.|+|+|.+++.=++-..+ ...|.+.-+..-.+ ....+..+.+ +-...
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~~-v~~p~ 231 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLVN-VFEPA 231 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHHH-HHHhc
Confidence 996531 24456788999999999999998855443211 22222111222233 5666777774 44455
Q ss_pred CeEEE
Q 029764 169 RVQLS 173 (188)
Q Consensus 169 ~~~~~ 173 (188)
+|+..
T Consensus 232 GF~v~ 236 (265)
T PF05219_consen 232 GFEVE 236 (265)
T ss_pred CCEEE
Confidence 66654
No 217
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.49 E-value=8e-07 Score=69.16 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=76.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-----cEEEEEcchHH-HHHHHhhc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALS-VLDQLLKY 91 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~-~~~~~~~~ 91 (188)
..+...++++|||-|.-.+..-++- -+.++|+|+..-.+..|++..+.+.-.. .+.|+.+|... .+..+...
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 4566789999999999777665542 4699999999999999998877653222 36789998765 34443311
Q ss_pred ccCCCceeEEEEe---C----CccchHHHHHHHHhccCcCeEEEEe
Q 029764 92 SENEGSFDYAFVD---A----DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 92 ~~~~~~~D~i~id---~----~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+.+||+|=+. + ......-++.++...|+|||++|-.
T Consensus 193 --~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 193 --KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred --CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 23459999432 2 1233455788889999999999863
No 218
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.48 E-value=8.8e-07 Score=69.37 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=76.3
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+++.|||+|||+|-.+.+.|.+- ..+|++||. .++...|++.++.+++.+++.++.|...++ ++ .++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence 466789999999999998888763 469999998 579999999999999999999999998776 33 4789
Q ss_pred eEEEEeC--CccchHHHHH---HHHhccCcCeEEEE
Q 029764 99 DYAFVDA--DKDNYCNYHE---RLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~--~~~~~~~~~~---~~~~~L~~gG~lv~ 129 (188)
|+|+... ..--....++ .+.+.|+|.|.+.-
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 9998763 1111122222 23489999998763
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.47 E-value=2.3e-06 Score=63.68 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-------hcCC-CCcEEEEEcc
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIESE 80 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~d 80 (188)
.++++ .+...+....+|+|||.|...+..|...+ -.+.+|||+.+...+.|++..+ ..+. ..++++.++|
T Consensus 32 ~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 34443 33566778999999999999888876654 4569999999998887765432 2333 2568888998
Q ss_pred hHHH--HHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 81 ALSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 81 ~~~~--~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..+. ...+ ....|+||++.. .+.....+......||+|..+|....+.
T Consensus 110 fl~~~~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 110 FLDPDFVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp TTTHHHHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred ccccHhHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 7652 3333 246899999853 2334445566678899999988765554
No 220
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.47 E-value=2.2e-06 Score=69.40 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCce
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
++.++||.=+|+|.-++..+..++...+|+.-|+++++.+.+++|++.+++++ ++++.+.|+...+.. ....|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccC
Confidence 34589999999999999999987645799999999999999999999999987 799999999876642 15899
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
|+|=+|. .....+|++.+.+.++.||+|.+..+-
T Consensus 123 D~IDlDP-fGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 123 DVIDLDP-FGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEEE---SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CEEEeCC-CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 9999995 334578999999999999999986543
No 221
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.43 E-value=5.1e-06 Score=65.19 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=68.3
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++..++|.-+|.|.-+..++..++ +++|+++|.+++++..+++.++.. .+++.+++++..++...+... ...+
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~ 92 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTK 92 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCc
Confidence 34567999999999999999999887 599999999999999999988754 468999999887765444221 1357
Q ss_pred eeEEEEeCCc
Q 029764 98 FDYAFVDADK 107 (188)
Q Consensus 98 ~D~i~id~~~ 107 (188)
+|.|++|...
T Consensus 93 vDgIl~DLGv 102 (305)
T TIGR00006 93 IDGILVDLGV 102 (305)
T ss_pred ccEEEEeccC
Confidence 9999999543
No 222
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.41 E-value=3.1e-06 Score=74.00 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhC---CC--------------------------------------
Q 029764 7 DAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTI---PE-------------------------------------- 44 (188)
Q Consensus 7 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~---~~-------------------------------------- 44 (188)
..+.-|-.++.- .++..++|.+||+|...+..|... ++
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 333333334433 356799999999999888766521 11
Q ss_pred CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC
Q 029764 45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 106 (188)
Q Consensus 45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~ 106 (188)
..+++++|+++++++.|++|+...|+.+.+++.++|+.+..... ..++||+|+.+.+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP 312 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP 312 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence 23799999999999999999999999888999999987653221 1257999999853
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.41 E-value=1.9e-06 Score=72.91 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=66.2
Q ss_pred CcHHHHHHHHHHHHHc-------CCCEEEEEcccchHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHhcC
Q 029764 4 TAPDAGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKKAG 69 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~~~ 69 (188)
|++..+++|..++... ...+|+|.+||+|...+.++..++. ...++++|+++..+..++.++...+
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 5666777776654321 3458999999999999988876631 2578999999999999999987765
Q ss_pred CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC
Q 029764 70 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 105 (188)
Q Consensus 70 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~ 105 (188)
. ..+.+...|.......... ...+.||+|+.+.
T Consensus 88 ~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNP 120 (524)
T TIGR02987 88 L-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNP 120 (524)
T ss_pred C-CCceeeecccccccccccc--cccCcccEEEeCC
Confidence 1 2245555654431110100 0136899998774
No 224
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.40 E-value=1.9e-06 Score=59.77 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=58.8
Q ss_pred EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC------Cc------cchHHHH
Q 029764 47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DK------DNYCNYH 114 (188)
Q Consensus 47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~------~~------~~~~~~~ 114 (188)
+|+++|+.+++++..++.+++.++.++++++...-......+. .+++|+++.+. ++ ......+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999999999999999999988899998876544433231 24899998772 22 2235678
Q ss_pred HHHHhccCcCeEEEEeccccCcc
Q 029764 115 ERLMKLLKVGGIAVYDNTLWGGT 137 (188)
Q Consensus 115 ~~~~~~L~~gG~lv~~~~~~~g~ 137 (188)
+.+.++|++||.+++. .++|.
T Consensus 76 ~~al~lL~~gG~i~iv--~Y~GH 96 (140)
T PF06962_consen 76 EAALELLKPGGIITIV--VYPGH 96 (140)
T ss_dssp HHHHHHEEEEEEEEEE--E--ST
T ss_pred HHHHHhhccCCEEEEE--EeCCC
Confidence 8889999999999985 55554
No 225
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.40 E-value=2.9e-06 Score=59.51 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=51.8
Q ss_pred cCCCEEEEEcccchHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHhcC--CCCcEEEEEcchHH
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALS 83 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~ 83 (188)
.+..+|+|+|||.|+.+..++..+ .++.+|++||.+++..+.+++..+..+ ...+..+..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 677799999999999999999822 137899999999999999999888776 43456666665543
No 226
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.39 E-value=1.4e-06 Score=64.41 Aligned_cols=105 Identities=22% Similarity=0.258 Sum_probs=63.8
Q ss_pred CCCEEEEEcccchHHHHHHHhhC--------CCCCEEEEEeCCchhHHHHHH------------------HH-HhcC---
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTI--------PEDGQITAIDVNRETYEIGLP------------------II-KKAG--- 69 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~--------~~~~~v~~iD~~~~~~~~a~~------------------~~-~~~~--- 69 (188)
++-+|+-.||++|.-+..+|-.+ +...+|+++|+|+.+++.|++ .+ ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999996444433211 113589999999999999974 11 0101
Q ss_pred -----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEec
Q 029764 70 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 70 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+..+++|...|..+..+ ..+.||+||+-. +.......++.+.+.|+|||+|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 11467888888777212 247999999874 34445778999999999999999853
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=9.2e-06 Score=59.93 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=71.4
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~ 95 (188)
..++..|+|+|+..|+++..+++.+.++++|+++|+.|-. .-.++.++++|..+ ....+... ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~-l~~ 109 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEA-LGG 109 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHH-cCC
Confidence 4456899999999999999999998767889999997632 11348888887653 22222221 123
Q ss_pred CceeEEEEeCCc--------cc------hHHHHHHHHhccCcCeEEEEeccc
Q 029764 96 GSFDYAFVDADK--------DN------YCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 96 ~~~D~i~id~~~--------~~------~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
..+|+|+.|..+ ++ ....++.+...|++||.+++...-
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 457999999543 11 123445556899999999997543
No 228
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=4.9e-06 Score=66.67 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC---CC----------------------------C-------EE
Q 029764 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---ED----------------------------G-------QI 48 (188)
Q Consensus 7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~~----------------------------~-------~v 48 (188)
..+.-|-.++.-.+...++|--||+|...+..|...+ |+ . .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3344444455555666899999999999888776543 11 1 37
Q ss_pred EEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-----------cchHHHHHHH
Q 029764 49 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERL 117 (188)
Q Consensus 49 ~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----------~~~~~~~~~~ 117 (188)
+|+|+++.+++.|+.|....|+.+.++|.++|+.++-+. ...+|+|+++.+. .-|..+.+.+
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999765322 1689999998532 1345566677
Q ss_pred HhccCcCeEEEEe
Q 029764 118 MKLLKVGGIAVYD 130 (188)
Q Consensus 118 ~~~L~~gG~lv~~ 130 (188)
.+.++..+..|+.
T Consensus 331 k~~~~~ws~~v~t 343 (381)
T COG0116 331 KRLLAGWSRYVFT 343 (381)
T ss_pred HHHhcCCceEEEE
Confidence 7888888888774
No 229
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.34 E-value=2e-06 Score=60.11 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=49.1
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
+++|+|||.|..+.+++...+ ..+++++|++|+.+..++++++.+++. ++.++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeee
Confidence 489999999999999998876 679999999999999999999888765 477776554
No 230
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.32 E-value=9.3e-06 Score=65.37 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=86.5
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH-HHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~ 95 (188)
.-+++.+|||..+..|.=+.++|.-+...+.|++-|.+...++..++|+.++|+.+ .-....|..++- ..+ .
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~------~ 310 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF------P 310 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc------C
Confidence 45567799999999999999999988877999999999999999999999999765 334556654432 112 3
Q ss_pred CceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 96 GSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 96 ~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
++||-|++|++.+. ..+++..+.+++++||+||.+....
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 48999999954322 1356777789999999999876654
No 231
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.30 E-value=2.7e-05 Score=57.78 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=85.6
Q ss_pred HHHHHHHc-CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764 12 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 90 (188)
Q Consensus 12 l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (188)
|.++++.. +..++.||||-.++.++++.+.-+ ...++..|+++..+..|.+++.+.++.++++...+|.+..+..
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--- 82 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--- 82 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---
Confidence 44444433 344599999999999999999866 7899999999999999999999999999999999998654322
Q ss_pred cccCCCceeEEEEeC-CccchHHHHHHHHhccCcCeEEEEe
Q 029764 91 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 91 ~~~~~~~~D~i~id~-~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|.|.+.+ .-.....++++-...|+.--.+|+.
T Consensus 83 ----~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 83 ----EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred ----cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence 35799999876 3334566777777777655556653
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.30 E-value=3.2e-06 Score=61.67 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=60.2
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-----HHHHHhhcccC
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSEN 94 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~~~ 94 (188)
++.++||+||+.|.++..++....+..+|+++|+.+.. +. ..+..+++|..+ .+..... ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~-~~~~~i~~d~~~~~~~~~i~~~~~--~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PL-QNVSFIQGDITNPENIKDIRKLLP--ES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHG--TT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cc-cceeeeecccchhhHHHhhhhhcc--cc
Confidence 34799999999999999999986336899999998761 11 235555555432 1222110 01
Q ss_pred CCceeEEEEeCCcc--------c------hHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~--------~------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+|++|..+. . ....+..+.+.|++||.+|+.
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 36899999997210 0 122344455789999988875
No 233
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.29 E-value=1.5e-05 Score=61.44 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=107.1
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CCC-CcEEEEEcchHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
+..+++.+|-||-|-|......+++ +.-..+..+|++...++..++.+... ++. +++.++.||...++....
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~---- 192 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK---- 192 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence 4678899999999999988888777 43578999999999999999988764 443 679999999998887652
Q ss_pred CCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec-cccCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029764 94 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 165 (188)
Q Consensus 94 ~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (188)
.++||+|+.|.+.. ....++..+.+.||++|+++... ..| - + .. ....+++|-..+.
T Consensus 193 -~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w-l-----------~-~~-~i~e~r~~~~~~f 257 (337)
T KOG1562|consen 193 -ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW-L-----------H-LD-YIKEGRSFCYVIF 257 (337)
T ss_pred -cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh-H-----------H-HH-HHHHHHHhHHHhc
Confidence 47999999985321 13457788889999999988743 222 0 0 00 4555788888877
Q ss_pred cCCCeEEEEeecC
Q 029764 166 DDPRVQLSHVALG 178 (188)
Q Consensus 166 ~~~~~~~~~lp~~ 178 (188)
..-++-.+..|..
T Consensus 258 ~~t~ya~ttvPTy 270 (337)
T KOG1562|consen 258 DLTAYAITTVPTY 270 (337)
T ss_pred CccceeeecCCCC
Confidence 7777777777744
No 234
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.29 E-value=1e-05 Score=63.80 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
-...+|+|.|.|..+..+...+| +|-+++.+...+..+.+++. .| ++.+-+|.++.. +.-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence 46899999999999999999776 68888888888877777664 33 777788876543 34568
Q ss_pred EEEe---C--CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 101 AFVD---A--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 101 i~id---~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
||+- + .-++..+++++|+..|+|||.|++.+...+.
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 8865 2 2345678999999999999999988876543
No 235
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.28 E-value=1.4e-06 Score=68.00 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCCEEEEEcccchHHHHHHH----hhCC---CCCEEEEEeCCchhHHHHHHH------------------HHhc-----C
Q 029764 20 NAKKTIEIGVFTGYSLLLTA----LTIP---EDGQITAIDVNRETYEIGLPI------------------IKKA-----G 69 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la----~~~~---~~~~v~~iD~~~~~~~~a~~~------------------~~~~-----~ 69 (188)
++.+|+-.||.+|--+..+| ...+ ...+|+++|+++.+++.|++. +... +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999996444433 3222 136899999999999999864 1110 0
Q ss_pred -------CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764 70 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 70 -------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+...++|.+.|..+. .+ +..+.||+||+-. +.+.....++.+.+.|+|||++++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~--~~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAK--QW----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCC--CC----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 113455666665431 00 0136899999742 3345678899999999999999874
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.27 E-value=5.5e-06 Score=64.07 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
+...+-+...+...++..|||||+|.|..|..++... .+++++|.++...+..++.+. ..++++++.+|+.+.-
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc
Confidence 4444555555566678899999999999999999874 699999999999999998765 2357999999998642
Q ss_pred HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccC---cCeEEEEeccccCcccc
Q 029764 86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK---VGGIAVYDNTLWGGTVA 139 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~g~~~ 139 (188)
.... .......|+...+......++..+...-+ ...++++..-.......
T Consensus 90 ~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 90 LYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLA 142 (262)
T ss_dssp GGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHT
T ss_pred cHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccC
Confidence 1100 01244566666555444566666665333 34566665544444333
No 237
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.26 E-value=1.3e-05 Score=59.74 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=72.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
+.++.+||=+|..+|.....++....+++.|+++|.++......-+..++- +|+-.+.+|+..-.... .--+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~----~lv~~ 143 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR----MLVEM 143 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT----TTS--
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh----ccccc
Confidence 556789999999999999999988877899999999997655554443332 46888888885321110 01358
Q ss_pred eeEEEEeCCccch-HHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~ 130 (188)
.|+||.|-..++. .-+..++...||+||.+++.
T Consensus 144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 9999999655443 44567777899999987763
No 238
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.26 E-value=5.6e-06 Score=63.88 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=68.7
Q ss_pred CCEEEEEcccchH----HHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHh-----cCCC----------------
Q 029764 21 AKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AGVD---------------- 71 (188)
Q Consensus 21 ~~~vLeiG~g~G~----~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~~~---------------- 71 (188)
+-+|...||++|- .++.+.+..+. ..+|++.|+|...++.|++-.=. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6799999999994 44444455542 57899999999999999742110 1111
Q ss_pred -------CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764 72 -------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 72 -------~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..|.|...|..+-.+ ..+.||+||+-. +.+.....++.....|+|||+|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 123343444332211 146799999752 4455567889999999999999984
No 239
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.24 E-value=3.7e-06 Score=60.78 Aligned_cols=99 Identities=9% Similarity=0.122 Sum_probs=76.5
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
..+.|+|+|+|-.+...|.. .-+|++||.+|.....|++|+.-.|. ++++++.+|+.+. . ....|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~-------fe~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--D-------FENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--c-------cccccee
Confidence 68999999999998887776 35999999999999999999866564 5799999999775 1 2567888
Q ss_pred EEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 102 FVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 102 ~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
++.. -.+..-+.++.+.+.|+..+.++-..+.
T Consensus 101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred HHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence 7542 1123346677888899999988765544
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.12 E-value=3.3e-05 Score=60.16 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=63.6
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+|.+|||+|||.|..+......++.-.+++++|.++.+++.++..++......... ...+. ..... .....
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~~---~~~~~----~~~~~ 103 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRVL---YRDFL----PFPPD 103 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhhh---hcccc----cCCCC
Confidence 467899999999998777666666645689999999999999998776543111111 11111 11110 12345
Q ss_pred eEEEEeC-----CccchHHHHHHHHhccCcCeEEEE
Q 029764 99 DYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|+|++.. .......+++.++..+++ .||+
T Consensus 104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl 137 (274)
T PF09243_consen 104 DLVIASYVLNELPSAARAELVRSLWNKTAP--VLVL 137 (274)
T ss_pred cEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence 8988763 124455677777777666 4444
No 241
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=9.7e-05 Score=57.38 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=70.1
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..+...++|.--|.|..+..++..++..++++++|.||++++.|++.+...+ +++.++++...+....+... ..++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~ 96 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK 96 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence 4455699999999999999999999877899999999999999999887755 68999999876654444322 2468
Q ss_pred eeEEEEeCCc
Q 029764 98 FDYAFVDADK 107 (188)
Q Consensus 98 ~D~i~id~~~ 107 (188)
+|-|++|...
T Consensus 97 vDGiL~DLGV 106 (314)
T COG0275 97 VDGILLDLGV 106 (314)
T ss_pred eeEEEEeccC
Confidence 9999998543
No 242
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.08 E-value=2.1e-05 Score=58.10 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764 8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 87 (188)
Q Consensus 8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 87 (188)
...++.++....+...|.|+|||.+..+..+ +..-+|.+.|+-+. +-.++..|.... .
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~----------------n~~Vtacdia~v--P 117 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP----------------NPRVTACDIANV--P 117 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS---S
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC----------------CCCEEEecCccC--c
Confidence 4556677766655679999999999887544 32457999998532 113556776443 1
Q ss_pred HhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029764 88 LLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 165 (188)
Q Consensus 88 ~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (188)
+ +.++.|+++... --.++..++.++.|.||+||.+.+.++..+ ....+.|.+.+.
T Consensus 118 L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR------------------f~~~~~F~~~~~ 174 (219)
T PF05148_consen 118 L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSR------------------FENVKQFIKALK 174 (219)
T ss_dssp -------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHH
T ss_pred C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEeccc------------------CcCHHHHHHHHH
Confidence 2 258999998764 346788999999999999999999876631 112788888876
Q ss_pred cCCCeEEEE
Q 029764 166 DDPRVQLSH 174 (188)
Q Consensus 166 ~~~~~~~~~ 174 (188)
.- +|....
T Consensus 175 ~~-GF~~~~ 182 (219)
T PF05148_consen 175 KL-GFKLKS 182 (219)
T ss_dssp CT-TEEEEE
T ss_pred HC-CCeEEe
Confidence 54 565544
No 243
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=6.4e-05 Score=59.83 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=85.7
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+.+|+|.-+|+|--++.+|...+ ..+++.=|++|++.+.+++|+..+... +...++.|+...+.+. ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence 78999999999999999999876 338999999999999999999887333 4666778998777654 478999
Q ss_pred EEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 101 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
|=+|. ...+.+|++.+.+.++.||++.+..+-
T Consensus 125 IDiDP-FGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 125 IDIDP-FGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred EecCC-CCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 98884 334578999999999999999985443
No 244
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.08 E-value=9.2e-05 Score=58.73 Aligned_cols=110 Identities=12% Similarity=0.049 Sum_probs=75.2
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccC
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
.++..++|+|||+|.=+..++.++.+ ..+++++|++.+.+..+.+.+....++. .+.-+++|..+.+.-+... ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~-~~ 153 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP-EN 153 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc-cc
Confidence 34458999999999988887776642 3679999999999999999887333332 2444788876654333210 00
Q ss_pred CCceeEEEEeC------CccchHHHHHHHHh-ccCcCeEEEE
Q 029764 95 EGSFDYAFVDA------DKDNYCNYHERLMK-LLKVGGIAVY 129 (188)
Q Consensus 95 ~~~~D~i~id~------~~~~~~~~~~~~~~-~L~~gG~lv~ 129 (188)
.....+++.-+ .+.....++..+.+ .|+||+.+++
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 12345665432 23445678889988 9999998887
No 245
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.07 E-value=1.8e-05 Score=61.88 Aligned_cols=81 Identities=12% Similarity=0.297 Sum_probs=50.0
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEEcchH-HHHHHHhhcccCCCcee
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFD 99 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~D 99 (188)
.++||||||...+=-.|+.... +-++++.|+++..++.|+++++.+ ++.++++++..... .++..+.. ..+.||
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence 4799999987765333333333 789999999999999999999999 89999998765432 23333221 246899
Q ss_pred EEEEeCC
Q 029764 100 YAFVDAD 106 (188)
Q Consensus 100 ~i~id~~ 106 (188)
+.++..+
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 9998753
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00014 Score=53.34 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=81.3
Q ss_pred HHHHHHHHHH------HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 8 AGQLMAMLLR------LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 8 ~~~~l~~l~~------~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
..++-+.++. +.++.+||=+|..+|.....++.-.+ .+.+++||.++......-..+++- +|+-.+.+|+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA 133 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDA 133 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeeccc
Confidence 3445555443 45677999999999999999988877 899999999998776666555442 4677788887
Q ss_pred HH--HHHHHhhcccCCCceeEEEEeCCccchH-HHHHHHHhccCcCeEEEE
Q 029764 82 LS--VLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 82 ~~--~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~ 129 (188)
.. ....+ -+..|+||.|-..++.. -+..++...|++||.+++
T Consensus 134 ~~P~~Y~~~------Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 134 RKPEKYRHL------VEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred CCcHHhhhh------cccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 53 22222 36799999997655544 455777889999996555
No 247
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.99 E-value=4.6e-05 Score=59.87 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764 10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 89 (188)
Q Consensus 10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (188)
+.+..|. ..++..++|.-.|.|+-+..+++.++ +++++++|.||++++.+++.+... .+++.+++++..++...+.
T Consensus 11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 3444333 55667999999999999999999998 599999999999999999877643 5789999988766544333
Q ss_pred hcccCCCceeEEEEeCCcc
Q 029764 90 KYSENEGSFDYAFVDADKD 108 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~~~ 108 (188)
.. ....++|.|++|...+
T Consensus 87 ~~-~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 87 EL-NGINKVDGILFDLGVS 104 (310)
T ss_dssp HT-TTTS-EEEEEEE-S--
T ss_pred Hc-cCCCccCEEEEccccC
Confidence 21 1246899999996543
No 248
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.98 E-value=7.7e-06 Score=67.35 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=58.0
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
..+||+|||+|+.+.+|... +..++++-. .--..++..++. -|++.-+..+ +.+.++-. .+.||+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~--~d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp------~~~fDm 184 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAP--NDEHEAQVQFALERGVPAMIGVL---GSQRLPFP------SNAFDM 184 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEccc--ccCCchhhhhhhhcCcchhhhhh---ccccccCC------ccchhh
Confidence 47999999999999999874 434444333 222222222221 2443222211 12333332 578999
Q ss_pred EEEeC----CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 101 AFVDA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 101 i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
|.+.. +.....-++-++-++|+|||+++.+....
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 97652 22222345667779999999999876654
No 249
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.93 E-value=4.2e-05 Score=56.04 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=76.9
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC------CCcEEEEEcchHHHHHHHhhcccC
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV------DHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...+.|||||.|...+.++-.+| +.-+.+.|+.-...+..++.+..+.. -.++.+...++..+++.+...
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k--- 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK--- 136 (249)
T ss_pred cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---
Confidence 34799999999999999999998 88999999999888888888877642 246788899999888887643
Q ss_pred CCceeEEEE---eCCcc--------chHHHHHHHHhccCcCeEEEE
Q 029764 95 EGSFDYAFV---DADKD--------NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 95 ~~~~D~i~i---d~~~~--------~~~~~~~~~~~~L~~gG~lv~ 129 (188)
++.+-.|+ |.+.. ....++.+..=+|++||.+..
T Consensus 137 -gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 137 -GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred -cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 44443332 21110 012456666679999998765
No 250
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=3.5e-05 Score=56.17 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=69.9
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++++|||.|+|+|-.++..++.- ...++..|++|-....++-|.+.++. .+.+...|... +...
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g----------~~~~ 142 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG----------SPPA 142 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC----------CCcc
Confidence 4567899999999999998888763 36899999999888888888888774 47777777643 1478
Q ss_pred eeEEEEeC---CccchHHHHHHHHhccCcCeEEEE
Q 029764 98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+|+++... ++.....++. +...|+..|..|+
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 99998752 3444445555 4455555554333
No 251
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00015 Score=51.41 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=67.9
Q ss_pred HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccC
Q 029764 18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
..++++|+|+|.|. |-.++.+|...+ ...|...|-+.+.++..++....+-.+ .++....-+.-.. +... .
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~---e 100 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQ---E 100 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHH---h
Confidence 44567899999985 446666666655 789999999999999888875443211 1121111111111 1111 1
Q ss_pred CCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+||+|++.. -.+....+.+.++.+|+|.|.-++-
T Consensus 101 q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 36899998642 1244567788899999999986653
No 252
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.86 E-value=0.00016 Score=57.50 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=62.6
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.++||+||++|.++..+++. +.+|++||..+ +. ..+.. .+++..+.+|.....+. .+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MA----QSLMD---TGQVEHLRADGFKFRPP-------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cC----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence 46779999999999999999986 67999999654 21 12222 35799999988766442 3689
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcC
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVG 124 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~g 124 (188)
|++++|... .+....+.+.+.|..|
T Consensus 272 DwvVcDmve-~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 272 DWLVCDMVE-KPARVAELMAQWLVNG 296 (357)
T ss_pred CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence 999999643 3345556666666666
No 253
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=2.9e-05 Score=63.76 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=94.8
Q ss_pred HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764 13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 92 (188)
Q Consensus 13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 92 (188)
....+..++.+|||.-|++|.-++..|..++...++++-|.++..++..++|++.++..+.++..++|+.-..-...+
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~-- 179 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM-- 179 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc--
Confidence 344566777899999999999999999999856789999999999999999999988888888889998765433211
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
-...||+|=+|..- ....|++.+.+.++.||+|++..+-
T Consensus 180 -~~~~FDvIDLDPyG-s~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 180 -VAKFFDVIDLDPYG-SPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred -cccccceEecCCCC-CccHHHHHHHHHhhcCCEEEEEecc
Confidence 12679999998532 3467899999999999999986544
No 254
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.74 E-value=7.2e-05 Score=61.53 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=83.8
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+..+|-+|-|+|....++-.+++ ..++++|+++|++++.|++++.-..- .+......|..+++.+......+...||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 34688888888999999888887 78999999999999999999865432 24566678888887776653234568999
Q ss_pred EEEeCCccc------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 101 AFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 101 i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+++|-+..+ ...++..+...|.|.|+++++-+..
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 999843211 1235556668999999999876554
No 255
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.72 E-value=0.0038 Score=47.27 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=61.0
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
..+++||=+|=.--.| +.+|.... ..+|+.+|+++..++..++..++.|++ ++.++.|..+-+|.-. .++|
T Consensus 43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKF 113 (243)
T ss_dssp STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-B
T ss_pred ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCC
Confidence 3678999999654443 44443333 469999999999999999999999975 8999999988777532 5899
Q ss_pred eEEEEeCCc--cchHHHHHHHHhccCcCe
Q 029764 99 DYAFVDADK--DNYCNYHERLMKLLKVGG 125 (188)
Q Consensus 99 D~i~id~~~--~~~~~~~~~~~~~L~~gG 125 (188)
|++|.|.+. ....-|+.+..+.||.-|
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999999743 445678888888888776
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.68 E-value=0.00048 Score=52.98 Aligned_cols=118 Identities=10% Similarity=0.105 Sum_probs=67.7
Q ss_pred HHHcCCCEEEEEcccch--HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh---h
Q 029764 16 LRLVNAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---K 90 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~ 90 (188)
+....-...||||||.- .++-.+|+...++++|+-+|.+|-.+..++..+....- ....++.+|..+.-.-+. .
T Consensus 64 a~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 64 AEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp HCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHH
T ss_pred HHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHH
Confidence 33335568999999944 36667777776799999999999999999998876541 247899998765322111 0
Q ss_pred cc-cC-CCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 91 YS-EN-EGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 91 ~~-~~-~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.. .+ ....=++++. .+..+....+..+...|.||++|+++....
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 00 11 2233333332 133567789999999999999999976553
No 257
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.66 E-value=0.00062 Score=59.45 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCEEEEEcccchHHHHHHHhhC-------CC----CCEEEEEeCCchh---H-----------HHHHHHHHhc-----CC
Q 029764 21 AKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRET---Y-----------EIGLPIIKKA-----GV 70 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~-------~~----~~~v~~iD~~~~~---~-----------~~a~~~~~~~-----~~ 70 (188)
.-+|+|+|-|+|.+.+...+.+ ++ ..+++++|..|-. + ..+++..+.. |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999877766544 11 2489999975522 2 2222222221 21
Q ss_pred ------CC--cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC--ccc----hHHHHHHHHhccCcCeEEEE
Q 029764 71 ------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN----YCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 71 ------~~--~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~--~~~----~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+ .++++.+|+.+.++++ ...+|++|.|+- ..+ ..+++..+.+++++||.+..
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 11 3457789999988876 356999999962 222 35789999999999999985
No 258
>PHA01634 hypothetical protein
Probab=97.64 E-value=0.0003 Score=47.78 Aligned_cols=74 Identities=14% Similarity=0.036 Sum_probs=55.7
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++++|+|||.+.|.++++++..- ..+|+++|.++...+..+++++.+..-++..-. ++. +. .-+.|
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~eW----~~------~Y~~~ 93 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-GEW----NG------EYEDV 93 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-ccc----cc------cCCCc
Confidence 467899999999999999998763 468999999999999999988766544333221 111 11 13789
Q ss_pred eEEEEeC
Q 029764 99 DYAFVDA 105 (188)
Q Consensus 99 D~i~id~ 105 (188)
|+..+|+
T Consensus 94 Di~~iDC 100 (156)
T PHA01634 94 DIFVMDC 100 (156)
T ss_pred ceEEEEc
Confidence 9999996
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00064 Score=51.19 Aligned_cols=99 Identities=20% Similarity=0.155 Sum_probs=70.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccCCC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEG 96 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~ 96 (188)
..+++.+||||+.+|..+..+.+.- ..+|+++|.....+.-- ++ ..+++..+. .++....+.-. .+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---LR---~d~rV~~~E~tN~r~l~~~~~-----~~ 143 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---LR---NDPRVIVLERTNVRYLTPEDF-----TE 143 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---Hh---cCCcEEEEecCChhhCCHHHc-----cc
Confidence 4577899999999999999988862 46999999876544311 11 124554443 45544322211 34
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
..|++++|...-.....+..+..++++++.++.
T Consensus 144 ~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 144 KPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 789999998887888889999999999987765
No 260
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.63 E-value=0.0008 Score=46.45 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=66.5
Q ss_pred EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC-CceeEEE
Q 029764 24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAF 102 (188)
Q Consensus 24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~D~i~ 102 (188)
++|+|||.|..+ .++...+....++++|.++.++..++..... .....+.+...+.......+ .. ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF-----EDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC-----CCCCceeEEe
Confidence 999999999977 4443322124889999999988885544332 21111567777665421111 12 3799993
Q ss_pred EeCCc--cchHHHHHHHHhccCcCeEEEEeccccC
Q 029764 103 VDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWG 135 (188)
Q Consensus 103 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 135 (188)
..... ......+..+.+.++++|.+++......
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33211 1146788899999999999988766543
No 261
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=8.7e-05 Score=55.53 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=72.4
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
+.++||||+.|.....+...- -.+++.+|.+..+++.++.. ++.++ ....+.+|- ++++ + ...++|+|
T Consensus 74 p~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DE-E~Ld-f-----~ens~DLi 141 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDE-EFLD-F-----KENSVDLI 141 (325)
T ss_pred cceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc-CCCce--EEEEEecch-hccc-c-----cccchhhh
Confidence 479999999999988876542 36899999999999988764 22232 245566765 3333 2 36899999
Q ss_pred EEe---CCccchHHHHHHHHhccCcCeEEEEe
Q 029764 102 FVD---ADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 102 ~id---~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+.. ++..+.+..+.+|...|||+|.++..
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 865 35567788899999999999998763
No 262
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.57 E-value=0.00089 Score=51.80 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcC-------CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC-----------
Q 029764 9 GQLMAMLLRLVN-------AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------- 70 (188)
Q Consensus 9 ~~~l~~l~~~~~-------~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------- 70 (188)
.-++..|....+ +.+||--|||.|+.+..+|.. +-.+.+.|.|--|+-..+-.+....-
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 344555555444 368999999999999999986 67899999987775444332221000
Q ss_pred ----------------------------CCcEEEEEcchHHHHHHHhhcccCCCceeEE----EEeCCccchHHHHHHHH
Q 029764 71 ----------------------------DHKINFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERLM 118 (188)
Q Consensus 71 ----------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i----~id~~~~~~~~~~~~~~ 118 (188)
..++.+..||..+....- ...++||.| |+|- ..+..++++.+.
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~ 189 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFIDT-AENIIEYIETIE 189 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEeec-hHHHHHHHHHHH
Confidence 112333344443332110 013689988 4553 457889999999
Q ss_pred hccCcCeEEEEeccccCc
Q 029764 119 KLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 119 ~~L~~gG~lv~~~~~~~g 136 (188)
.+|||||+-|=-.++..+
T Consensus 190 ~lLkpgG~WIN~GPLlyh 207 (270)
T PF07942_consen 190 HLLKPGGYWINFGPLLYH 207 (270)
T ss_pred HHhccCCEEEecCCcccc
Confidence 999999966554555433
No 263
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.56 E-value=0.00013 Score=58.78 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=81.8
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..++..++++|||.|.....++..- .+.+++++.++-.+..+.......++.++..+..++..+.. +++.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn~ 178 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDNT 178 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCccc
Confidence 4455579999999999999988752 67899999999888888887777777766666555554321 13578
Q ss_pred eeEEEE-e--CCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 98 FDYAFV-D--ADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 98 ~D~i~i-d--~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
||.+.+ + .+.+.....++++.+.++|||+.+..+..
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 999854 4 35567788999999999999999986544
No 264
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.0014 Score=47.73 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=66.0
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHH--HHHHHhhcccC
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS--VLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~~~~~~ 94 (188)
..+..+|||+|+..|.++.-.-+...+++.|.+||+-+= . +. ..++++.+ |..+ ....+... ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~-~Ga~~i~~~dvtdp~~~~ki~e~-lp 133 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP-EGATIIQGNDVTDPETYRKIFEA-LP 133 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC-CCcccccccccCCHHHHHHHHHh-CC
Confidence 456789999999999999988888866899999998421 1 11 22455555 3322 11111111 12
Q ss_pred CCceeEEEEeCCc-------cchHHHHHHH-------HhccCcCeEEEEeccccCc
Q 029764 95 EGSFDYAFVDADK-------DNYCNYHERL-------MKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 95 ~~~~D~i~id~~~-------~~~~~~~~~~-------~~~L~~gG~lv~~~~~~~g 136 (188)
....|+|+.|-.+ .+....++.| ...++|+|.+++. +|.|
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 4689999998422 1222333333 4688999999996 6655
No 265
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.47 E-value=0.00052 Score=52.32 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764 8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 87 (188)
Q Consensus 8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 87 (188)
...++.++-.......|.|+|||-+..+. . ..-.|.+.|+-+ .+-.++.+|..++ |
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a----------------~~~~V~~cDm~~v-P- 223 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA----------------VNERVIACDMRNV-P- 223 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec----------------CCCceeeccccCC-c-
Confidence 34566666666566689999999988755 2 134799999842 1235667776553 1
Q ss_pred HhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 88 LLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 88 ~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+ ++++.|+++... --.+...++.++.+.|++||.+.+.++-
T Consensus 224 l-----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 224 L-----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred C-----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 1 258999988764 3467889999999999999999987655
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.35 E-value=0.00034 Score=52.89 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=48.5
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc---C-C----CCcEEEEEcchHHHHHHHhhcccC
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---G-V----DHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~-~----~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
+|||+-+|-|.-++.+|.. +++|+++|-+|-.....+.-++.. . . ..+++++++|+.+++...
T Consensus 78 ~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~------ 148 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP------ 148 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH------
T ss_pred EEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc------
Confidence 8999999999999998864 679999999998776666544332 1 1 147999999999887621
Q ss_pred CCceeEEEEeC
Q 029764 95 EGSFDYAFVDA 105 (188)
Q Consensus 95 ~~~~D~i~id~ 105 (188)
..+||+|++|.
T Consensus 149 ~~s~DVVY~DP 159 (234)
T PF04445_consen 149 DNSFDVVYFDP 159 (234)
T ss_dssp SS--SEEEE--
T ss_pred CCCCCEEEECC
Confidence 57999999995
No 267
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.33 E-value=0.0014 Score=55.11 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 80 (188)
|+++..++|..++...+..+|+|..||+|+.....+..+.. ...+++.|.++..+..++.|+--.+....+...++|
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 67888899998888766779999999999877776665532 367999999999999999998877765445666666
Q ss_pred hHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCe---EEEE
Q 029764 81 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGG---IAVY 129 (188)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG---~lv~ 129 (188)
........ +. .+...||+|+...+. .....++..+...|+||| +++.
T Consensus 250 tl~~~~~~-~~-~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 250 TLSNPKHD-DK-DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccCCccc-cc-CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 54321110 00 124678988654211 112567888899999865 4555
Q ss_pred eccccCc
Q 029764 130 DNTLWGG 136 (188)
Q Consensus 130 ~~~~~~g 136 (188)
++++..|
T Consensus 328 ~gvlfr~ 334 (489)
T COG0286 328 DGVLFRG 334 (489)
T ss_pred CCcCcCC
Confidence 6666544
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.22 E-value=0.0043 Score=49.50 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=69.8
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
...++++|+-+|.| .|..++.+|+.+ +.+|+++|.+++..+.|++. |. -.++.....+..... .
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~ 227 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------K 227 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------H
Confidence 46677888888877 456888899876 58999999999998888875 31 233343222333333 2
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+.+|+|+.-.. ...++...+.|++||.+++-...
T Consensus 228 ~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 34999987643 45678888999999999986555
No 269
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.21 E-value=0.0059 Score=48.13 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=72.4
Q ss_pred HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
.....+.+||-+|+| .|..+...|+++. ..+|+.+|+.++.++.|++ + |...-...-+.++.+.+.+..++...
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence 346677899999999 5778888889886 7899999999999999998 4 43321111222223333333332122
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
...+|+.|-.. .....++.....++.||.+++..
T Consensus 240 ~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 240 KKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred ccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence 24588888543 33455677788999999987754
No 270
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.18 E-value=0.00074 Score=53.45 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHH-------HHHHHHHhcCCCC-cEEE
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVDH-KINF 76 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~~-~~~~ 76 (188)
.++..-+++.++...+++.|.|-..|+|+..+..|.- ++.|+|.|++-.++. ..+.|+++.|.++ -+.+
T Consensus 193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldv 269 (421)
T KOG2671|consen 193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDV 269 (421)
T ss_pred chhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhhe
Confidence 4677888899999999999999999999988887765 779999999877766 5678899988653 3566
Q ss_pred EEcchHHHHHHHhhcccCCCceeEEEEeCCcc------------------------c------------hHHHHHHHHhc
Q 029764 77 IESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------N------------YCNYHERLMKL 120 (188)
Q Consensus 77 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------------~------------~~~~~~~~~~~ 120 (188)
..+|...- .+. ....||.|++|.+.. + +-+.+....+.
T Consensus 270 l~~D~sn~--~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~ 343 (421)
T KOG2671|consen 270 LTADFSNP--PLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRR 343 (421)
T ss_pred eeecccCc--chh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhh
Confidence 77776432 221 136899999983110 0 12345555689
Q ss_pred cCcCeEEEEe
Q 029764 121 LKVGGIAVYD 130 (188)
Q Consensus 121 L~~gG~lv~~ 130 (188)
|..||.+++-
T Consensus 344 L~~ggrlv~w 353 (421)
T KOG2671|consen 344 LVDGGRLVFW 353 (421)
T ss_pred hhcCceEEEe
Confidence 9999999984
No 271
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00036 Score=55.39 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=67.9
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
...+++|||+|.|.|.....+-.-+|.-..++.+|.+|..-+..-...+.... .+.....+|...--..+. ....
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp----~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP----AADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC----ccce
Confidence 34567999999999988777766677445678888887655555443333222 222233333322111221 1356
Q ss_pred eeEEEEe------CCccchHHHHHHHHhccCcCeEEEEec
Q 029764 98 FDYAFVD------ADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id------~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
|+++++- .........++.+|.++.|||.+|+.+
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 7877653 234445668999999999999999864
No 272
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0028 Score=50.70 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=78.9
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh--h
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL--K 90 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~ 90 (188)
+...++.+|||.++..|+-++.+.+.+.+ .+.+++=|.++..+...+......+ +.+..+...++... +... +
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~-p~~~~~~ 228 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLF-PNIYLKD 228 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceec-ccccccc
Confidence 46778889999999999999988887642 3589999999998888877765544 23344444444322 1110 1
Q ss_pred c-ccCCCceeEEEEeCCccc--------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764 91 Y-SENEGSFDYAFVDADKDN--------------------------YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 91 ~-~~~~~~~D~i~id~~~~~--------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
. +.....||-|++|.+.+. ...++.+..++||+||.+|.+....
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 0 012468999999832110 1245667779999999999987665
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0033 Score=44.02 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=75.7
Q ss_pred HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
++..++....+|+|+|-|...+..++.. -..-+++|++|=....++-..-+.|+.....|...|...+ .
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--d------- 135 (199)
T KOG4058|consen 67 LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--D------- 135 (199)
T ss_pred HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--c-------
Confidence 3344555689999999999988888763 2467899999988888887777778887888888887654 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
...|..+.+-+..+-...+-+.+...+..|..++..-
T Consensus 136 l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 136 LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 2455555554444444455556666888888887753
No 274
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.11 E-value=0.0018 Score=49.24 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=51.8
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.++.+|+|||||.-=.++...... ++..++++|+++.+++.....+...+.. .++...|.....+ ....
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~~~ 172 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KEPA 172 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TSEE
T ss_pred CCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CCCc
Confidence 447899999998777776655433 3679999999999999999999888754 5555666544322 4679
Q ss_pred eEEEEe
Q 029764 99 DYAFVD 104 (188)
Q Consensus 99 D~i~id 104 (188)
|+.++=
T Consensus 173 DlaLll 178 (251)
T PF07091_consen 173 DLALLL 178 (251)
T ss_dssp SEEEEE
T ss_pred chhhHH
Confidence 999874
No 275
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.04 E-value=0.0039 Score=47.19 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=77.3
Q ss_pred HHHHHHHHHHH------HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764 6 PDAGQLMAMLL------RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 79 (188)
Q Consensus 6 ~~~~~~l~~l~------~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
|-..+|.+.++ ++.++..||=+|.++|.+...+.....+++-|+++|.++..=...-.... --.|+-.+..
T Consensus 136 PfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk---kRtNiiPIiE 212 (317)
T KOG1596|consen 136 PFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK---KRTNIIPIIE 212 (317)
T ss_pred hHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh---ccCCceeeec
Confidence 34445555443 46788899999999999988888777678999999998754333322222 1245777888
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeCCccchHHHH-HHHHhccCcCeEEEEe
Q 029764 80 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYD 130 (188)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~ 130 (188)
|+..-....- .-+-.|+||.|..+++....+ -++.-.||+||-+++.
T Consensus 213 DArhP~KYRm----lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 213 DARHPAKYRM----LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred cCCCchheee----eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 8754221100 024679999997665544433 3344689999987773
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.00 E-value=0.0071 Score=48.80 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=70.5
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG 96 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~ 96 (188)
.++.+|+-+|+| .|-.+..+++... ..+|+.+|.+++.++.|++.... ..+..... +......... ...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCC
Confidence 344489999998 4667777888775 68999999999999999885421 11111112 2222222221 124
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
.+|++|-... ....++++.+.+++||.+++-.+..
T Consensus 238 g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 238 GADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 7999997654 4557889999999999999876554
No 277
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.97 E-value=0.028 Score=39.34 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=60.0
Q ss_pred HHHHHHHHcCC--CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764 11 LMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 88 (188)
Q Consensus 11 ~l~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (188)
.|.+.+..... .-|||+|-|.|..=-.+-..+| +.+|+.+|-.-..... ..++.-.++.||+.+.++.+
T Consensus 17 ~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~--------~~P~~~~~ilGdi~~tl~~~ 87 (160)
T PF12692_consen 17 CLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPS--------STPPEEDLILGDIRETLPAL 87 (160)
T ss_dssp HHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GG--------G---GGGEEES-HHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCC--------CCCchHheeeccHHHHhHHH
Confidence 44555544433 3699999999998888888888 8999999964222111 11233458999999988873
Q ss_pred hhcccCCCceeEEEEeCCccc---hHHHH----HHHHhccCcCeEEEEecccc
Q 029764 89 LKYSENEGSFDYAFVDADKDN---YCNYH----ERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 89 ~~~~~~~~~~D~i~id~~~~~---~~~~~----~~~~~~L~~gG~lv~~~~~~ 134 (188)
... ..+.-++..|....+ -..+. ..+.++|.+||++|....+.
T Consensus 88 ~~~---g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 88 ARF---GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHH----S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred Hhc---CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 322 456667777742222 11222 22347999999999877664
No 278
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.89 E-value=0.0018 Score=49.84 Aligned_cols=112 Identities=17% Similarity=0.103 Sum_probs=63.7
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC---c-----------------------
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH---K----------------------- 73 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~---~----------------------- 73 (188)
++.++||||||.-.. .+..+.+.-.+|++.|..+.-.+..++.+++.+..+ .
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 456899999987432 222222223489999999988888887776543111 0
Q ss_pred -E-EEEEcchHHHHHHHhhcccCCCceeEEEEeC-------CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 74 -I-NFIESEALSVLDQLLKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 74 -~-~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+ +++..|..+.- .+.......++||+|+.-. +.+.+...++++.++|||||.+++..++.
T Consensus 134 ~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 1 12223322110 0000000013599997652 45667888999999999999999977664
No 279
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.76 E-value=0.0071 Score=45.54 Aligned_cols=84 Identities=10% Similarity=0.193 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEE-cchHHHHHHHhhcccCCCcee
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~D 99 (188)
.++||||+|.-+.=- +.-....+-+.++.|+++..+..|+.++..+ ++...+++.. .|...+++..... .+.||
T Consensus 80 i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE~yd 155 (292)
T COG3129 80 IRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NERYD 155 (292)
T ss_pred eEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---cceee
Confidence 479999987654311 2221123678999999999999999998876 6666677654 4444455554321 57899
Q ss_pred EEEEeCCccc
Q 029764 100 YAFVDADKDN 109 (188)
Q Consensus 100 ~i~id~~~~~ 109 (188)
+..++.+...
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999865443
No 280
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.76 E-value=0.0062 Score=41.50 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=61.9
Q ss_pred cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccc
Q 029764 30 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 109 (188)
Q Consensus 30 g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~ 109 (188)
|.|..++.+|+.. +.+|+++|.+++..+.+++ .|...-+.....|..+.+.++. ....+|+||-...
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHh----hccccccccccccccccccccc----ccccceEEEEecC---
Confidence 4688999999986 4899999999988777765 3422111111223444444442 1247999987543
Q ss_pred hHHHHHHHHhccCcCeEEEEecccc
Q 029764 110 YCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 110 ~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
....++.+..+++++|.+++-....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2467888999999999999865543
No 281
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.75 E-value=0.06 Score=40.22 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=66.3
Q ss_pred HHHHHHHHHc---CCCEEEEEcccchHHHHHHHhhCCCC-CEEEEEeCCchhHHHHHHHHHhc-----------------
Q 029764 10 QLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKA----------------- 68 (188)
Q Consensus 10 ~~l~~l~~~~---~~~~vLeiG~g~G~~~~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~----------------- 68 (188)
++++.-++.. .|-++.|..||+|+....+..-.+.. ..|++-|+++++++.|++|+.-.
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 4444443333 44589999999999776665543322 57999999999999997654322
Q ss_pred ------------------------CCCCcEEEEEcchHHH--HHHHhhcccCCCceeEEEEeC-------Cc-----cch
Q 029764 69 ------------------------GVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDA-------DK-----DNY 110 (188)
Q Consensus 69 ------------------------~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D~i~id~-------~~-----~~~ 110 (188)
|-.....+.+.|.++- +.... .....|+|+.|. |. ...
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~----~~~~~diViTDlPYG~~t~W~g~~~~~p~ 193 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD----AGFTPDIVITDLPYGEMTSWQGEGSGGPV 193 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH----TT---SEEEEE--CCCSSSTTS---HHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc----cCCCCCEEEecCCCcccccccCCCCCCcH
Confidence 1111245566666552 22221 134579999983 11 124
Q ss_pred HHHHHHHHhccCcCeEEEEec
Q 029764 111 CNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 111 ~~~~~~~~~~L~~gG~lv~~~ 131 (188)
..+++.+.+.|..++++++.|
T Consensus 194 ~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 194 AQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHHhhCCCCcEEEEec
Confidence 578899999997777877743
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.73 E-value=0.0069 Score=50.40 Aligned_cols=120 Identities=12% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC--CchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV--NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
+-..|+|..+|.|..++.|... ..-|.-+=+ .+..+.. +-.-|+ +...+ |-.+.++.. ..+
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~~~ntL~v----IydRGL---IG~yh-DWCE~fsTY------PRT 427 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD---PVWVMNVVPVSGPNTLPV----IYDRGL---IGVYH-DWCEAFSTY------PRT 427 (506)
T ss_pred ceeeeeeecccccHHHHHhccC---CceEEEecccCCCCcchh----hhhccc---chhcc-chhhccCCC------Ccc
Confidence 3458999999999999998753 222322222 2222221 222232 22222 333333332 579
Q ss_pred eeEEEEeCCcc------chHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeE
Q 029764 98 FDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 171 (188)
Q Consensus 98 ~D~i~id~~~~------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (188)
||+|..++-.+ .....+-++-+.|+|+|.+++.|... +...++.+...+ +++
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~l----rW~ 485 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSL----RWE 485 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhC----cce
Confidence 99998774222 24566777789999999999976553 455566666665 555
Q ss_pred EEEeecC
Q 029764 172 LSHVALG 178 (188)
Q Consensus 172 ~~~lp~~ 178 (188)
+.+....
T Consensus 486 ~~~~d~e 492 (506)
T PF03141_consen 486 VRIHDTE 492 (506)
T ss_pred EEEEecC
Confidence 5555433
No 283
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.71 E-value=0.0044 Score=50.75 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=51.3
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.+||||+|+|-.+...+++. .-.++++|.-..+.+.|++...++|.+++++++...+.+
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 58999999999998888875 347999999999999999999999999999988755433
No 284
>PRK11524 putative methyltransferase; Provisional
Probab=96.68 E-value=0.0077 Score=47.19 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh
Q 029764 9 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 67 (188)
Q Consensus 9 ~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 67 (188)
.+|+..++.. .++..|||..+|+|..++...+. +.+.+|+|++++.++.|++.++.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4566766654 46779999999999988876654 67999999999999999998754
No 285
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0023 Score=46.85 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHH------HHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG------LPIIKKAGVDHKINFIESEALSVLDQLL 89 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a------~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (188)
+...++.+|+|+-.|.|+++.-++....+.+.|++.-..+...-.. +....+..+ .|++.+-.+.....
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~---- 118 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG---- 118 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC----
Confidence 3466778999999999999999999887778888875533211100 111111111 12333322221111
Q ss_pred hcccCCCceeEEEEeC----------CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 90 KYSENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
..+..|+++... +......+...+.+.|||||++++.|...
T Consensus 119 ----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 119 ----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred ----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 024455554321 12234567788899999999988877653
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.57 E-value=0.04 Score=44.96 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=68.0
Q ss_pred HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhccc
Q 029764 16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSE 93 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~ 93 (188)
....++.+||.+|+|. |..+..+|+... ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+.
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~---- 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT---- 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----
Confidence 3455677999999987 888888998864 346999999998888777642 21 112222221 223333331
Q ss_pred CCCceeEEEEeCCc------------------cchHHHHHHHHhccCcCeEEEEec
Q 029764 94 NEGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 94 ~~~~~D~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
....+|+++-.... .+....++.+.+.++++|.++.-.
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 12468988653211 112456788889999999988754
No 287
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.54 E-value=0.015 Score=44.42 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=61.4
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-----cCCCCcEEEEE---cchHHHHHHHhhc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-----AGVDHKINFIE---SEALSVLDQLLKY 91 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-----~~~~~~~~~~~---~d~~~~~~~~~~~ 91 (188)
+..+|||+|+|+|..++..|... ...++..|. +......+.+... .++...+.... +++.+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 46689999999998888877754 568888776 4444444333222 22222233222 334333222
Q ss_pred ccCCCc-eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764 92 SENEGS-FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 92 ~~~~~~-~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+. +|+|+... ..+....+...+..+|..++.+.+.
T Consensus 159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 234 89998642 3456677788888899999955554
No 288
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.43 E-value=0.011 Score=44.01 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 029764 9 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 63 (188)
Q Consensus 9 ~~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 63 (188)
.+++..++. ..++..|||..+|+|..+....+. +.+.+++|++++.++.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 456666654 346679999999999988876664 6689999999999998875
No 289
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.14 Score=39.16 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=79.1
Q ss_pred HHHHHHHH----HHHHcCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764 7 DAGQLMAM----LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 79 (188)
Q Consensus 7 ~~~~~l~~----l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
..+.+++. ++....+...+|+|+|+-.-+..+...+.. -.+++.||++...+...-+.+...-..-.+.-+.+
T Consensus 61 tEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~ 140 (321)
T COG4301 61 TEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCG 140 (321)
T ss_pred hHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh
Confidence 34455544 345667889999999999888888877752 26899999999988655444443221222555677
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEE
Q 029764 80 EALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|....+..+.. .+.-=++|+.. .+.....|+.++...|+||-++.+
T Consensus 141 ~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 141 DYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred hHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 76655555531 23333445542 345567899999999999998877
No 290
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.37 E-value=0.0015 Score=50.86 Aligned_cols=102 Identities=16% Similarity=0.065 Sum_probs=70.4
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
..|+|+..|.||.+..+.-... ...|.++|.+|..++..+.+++.++...+..++.+|....-+ ....|-|
T Consensus 196 eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~AdrV 266 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRADRV 266 (351)
T ss_pred chhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccchhe
Confidence 6899999999999994443332 578999999999999999999988877777777777643311 3567888
Q ss_pred EEeCCccchHHHHHHHHhccCc-Ce-EEEEeccc
Q 029764 102 FVDADKDNYCNYHERLMKLLKV-GG-IAVYDNTL 133 (188)
Q Consensus 102 ~id~~~~~~~~~~~~~~~~L~~-gG-~lv~~~~~ 133 (188)
.+..-++.-..... +.+.|++ || .+-++...
T Consensus 267 nLGLlPSse~~W~~-A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 267 NLGLLPSSEQGWPT-AIKALKPEGGSILHIHENV 299 (351)
T ss_pred eeccccccccchHH-HHHHhhhcCCcEEEEeccc
Confidence 77654444333333 3355554 44 56555444
No 291
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.27 E-value=0.00064 Score=50.20 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=62.4
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
..+.++||+|.|.|-.+..++..+. +|++.|.+..|....++. ++ .++. ..+.... +-+|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~y----nVl~--~~ew~~t-------~~k~ 170 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----NY----NVLT--EIEWLQT-------DVKL 170 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----CC----ceee--ehhhhhc-------Ccee
Confidence 3457999999999999999987765 788889888887655542 22 2111 1122111 3578
Q ss_pred eEEEEeC---CccchHHHHHHHHhccCc-CeEEEEeccc
Q 029764 99 DYAFVDA---DKDNYCNYHERLMKLLKV-GGIAVYDNTL 133 (188)
Q Consensus 99 D~i~id~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 133 (188)
|+|.+-. .+-+...+++.++..|+| +|.+|+.=++
T Consensus 171 dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 171 DLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred ehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 8885421 123446788889999998 7877765433
No 292
>PRK13699 putative methylase; Provisional
Probab=96.25 E-value=0.02 Score=43.38 Aligned_cols=56 Identities=7% Similarity=0.029 Sum_probs=44.6
Q ss_pred HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc
Q 029764 10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68 (188)
Q Consensus 10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~ 68 (188)
+++..++. ..++..|||..||+|..+....+. +.+.+++|++++..+.+.+.++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 45555553 346779999999999988876664 669999999999999998887654
No 293
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.08 E-value=0.036 Score=36.99 Aligned_cols=89 Identities=20% Similarity=0.110 Sum_probs=58.6
Q ss_pred ccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCceeEEEEeC
Q 029764 29 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA 105 (188)
Q Consensus 29 ~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~i~id~ 105 (188)
||.|..+..+++.+.... +++.+|.+++..+.+++. + +.++.+|..+ .+.+. ...+.+.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA-----GIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc-----CccccCEEEEcc
Confidence 556788888888775455 899999999987766653 2 6688899865 34433 246889998876
Q ss_pred CccchHHHHHHHHhccCcCeEEEEe
Q 029764 106 DKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 106 ~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
......-..-...+.+.+...+++.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5443333344445667777777653
No 294
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.01 E-value=0.41 Score=37.06 Aligned_cols=110 Identities=7% Similarity=0.040 Sum_probs=65.4
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--CCcEEEEEcchHHH-HHHHhhcccCCCc
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSV-LDQLLKYSENEGS 97 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~-~~~~~~~~~~~~~ 97 (188)
...|+.+|||.=.-...+ ..+.+.+++=+|. |+.++.-++.+.+.+. ..+.+++..|..+. ...+...+.+...
T Consensus 82 ~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 458999999655544444 2232456666665 5666666666766543 35678888887532 2333221111122
Q ss_pred eeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 98 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 98 ~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.-+++..+ ..+....+++.+.+...+|+.++++-..
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 22344333 3455677888888888899999997543
No 295
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.01 E-value=0.013 Score=43.71 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=52.2
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCceeE
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDY 100 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~ 100 (188)
.++|||||=+....+.... --.|+.||+++.. -.+.+.|..+. ++.- +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~-----~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN-----ESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC-----cccceeE
Confidence 4899999976665443322 3469999998742 12445554442 2211 2478999
Q ss_pred EEEeC------CccchHHHHHHHHhccCcCeE
Q 029764 101 AFVDA------DKDNYCNYHERLMKLLKVGGI 126 (188)
Q Consensus 101 i~id~------~~~~~~~~~~~~~~~L~~gG~ 126 (188)
|.+.. .+...-+.+..+.+.|+++|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 96552 344456788899999999999
No 296
>PRK11524 putative methyltransferase; Provisional
Probab=95.97 E-value=0.02 Score=44.89 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=40.2
Q ss_pred cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc------c-------------hHHHHHHHHhccCcCeEEEEe
Q 029764 73 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------N-------------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 73 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------~-------------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+++++|+.+.+..+. .++||+|++|.+.. . ...++..+.++||+||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45789999999876653 47899999985421 0 135778889999999998874
No 297
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.90 E-value=0.12 Score=40.87 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=61.4
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
..++.+||..|+| .|..++.+|+.. +.++++++.+++..+.+++ .+....+.....+..+.+ ... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence 4556688888875 477778888875 5789999999887776644 343211111111222222 221 246
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+|+++-.... ...++.+++.|+++|.++.-
T Consensus 232 ~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 79977643222 34677888999999998864
No 298
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.90 E-value=0.091 Score=42.06 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=59.3
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++.+||-+|+| .|..++.+|+... ..+|+++|.+++..+.+++ +|...-+.....+.. ++... .+.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~---~g~ 235 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE---KGY 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc---CCC
Confidence 356788888875 3456666777653 2379999999988877765 343211111111221 22111 245
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
+|+||-.... ...++.+.+.|++||.++.-..
T Consensus 236 ~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 236 FDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 8988754322 2356778899999999987643
No 299
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.87 E-value=0.24 Score=42.01 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=67.5
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEE--EE-------------cch
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IE-------------SEA 81 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~--~~-------------~d~ 81 (188)
..++.+|+-+|+| .|..++..|+.+ +.+|+.+|.+++..+.+++. |.. .+.+ .. .+.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhH
Confidence 3578899999998 466778888876 45899999999988877762 321 0111 01 011
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCccc--hHHH-HHHHHhccCcCeEEEEeccccCc
Q 029764 82 LSVLDQLLKYSENEGSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
.+.......+ ....+|++|-....+. .... .+++.+.+|+||+++.-.....|
T Consensus 235 ~~~~~~~~~~--~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 235 IKAEMALFAE--QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHHHHHh--ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 1111111100 1246999987653221 1234 48899999999998876554334
No 300
>PRK13699 putative methylase; Provisional
Probab=95.85 E-value=0.021 Score=43.28 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=39.2
Q ss_pred EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc------------------chHHHHHHHHhccCcCeEEEE
Q 029764 74 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+++++|+.+.+..+. .+++|+|+.|.+.. -....+.++.++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3678999999988874 68999999994321 123567888899999998875
No 301
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.79 E-value=0.027 Score=38.50 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=37.6
Q ss_pred EEEEEcchHHHHHHHhhcccCCCceeEEEEeCC--ccc----hHHHHHHHHhccCcCeEEEE
Q 029764 74 INFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN----YCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~--~~~----~~~~~~~~~~~L~~gG~lv~ 129 (188)
+++..+|+.+.++++ ...+|+||.|+- ..+ ..+++..+.+++++||.+..
T Consensus 33 L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 567889999988886 479999999962 222 36799999999999999986
No 302
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.71 E-value=0.23 Score=39.91 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=63.3
Q ss_pred HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~ 93 (188)
...++.+||-.|+ +.|..++.+|+.. +.++++++.+++..+.+++. .|...-+..... +..+.+....
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---- 225 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF---- 225 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC----
Confidence 3456778998887 4777888888875 57899999888766655432 343221221111 3333333321
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.+.+|++|-... ...+..+++.|+++|.+++-.
T Consensus 226 -~~gvD~v~d~vG----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 226 -PEGIDIYFDNVG----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -CCCcEEEEECCC----HHHHHHHHHHhccCCEEEEEC
Confidence 246898873322 235678889999999998754
No 303
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.70 E-value=0.24 Score=39.06 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=62.4
Q ss_pred HHHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764 16 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 16 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
....++.+||-.| .+.|..++.+|+.. +.++++++.+++..+.+++ .|...-+.....+..+.+..+.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~---- 208 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA---- 208 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC----
Confidence 3455677888887 45677888888875 5689999888877666654 3532212211123333333321
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+|+ |..- ...+...++.|+++|.++.-
T Consensus 209 -~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 -PDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -CCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEEE
Confidence 35699887 3322 14567888999999998864
No 304
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.61 E-value=0.23 Score=39.35 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 21 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 21 ~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
+..|.-||.| .|..+..+|..+ ++.|+.+|.|.+.+......+ ..+++..-.+...+.... .++|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~aD 233 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKAD 233 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhcc
Confidence 3356677776 577888888876 689999999998887776655 246777777776665444 5788
Q ss_pred EEEEe---CCccchHHHHHHHHhccCcCeEEEE
Q 029764 100 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 100 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+++-. .....+.-..+++...+|||+++|=
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 88643 2233444566788899999998874
No 305
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.50 E-value=0.17 Score=38.71 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 85 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 85 (188)
+....++..+...++... +..-+|+-..+..+.+ +.-+.+.+|+.|+-.+..++++.. ..++.+++.|..+.+
T Consensus 44 ~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l 116 (245)
T PF04378_consen 44 PALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL 116 (245)
T ss_dssp GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred HHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence 344566666666665544 5566666556665555 367999999999999988888764 347999999999877
Q ss_pred HHHhhcccCCCceeEEEEeCC---ccchHHHHHHHHhccC--cCeEEEE
Q 029764 86 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY 129 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~ 129 (188)
..+... ...=-+|+||.+ +.++....+.+...++ +.|++++
T Consensus 117 ~allPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 117 KALLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hhhCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 665422 345569999974 3455555555554444 4555544
No 306
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.50 E-value=0.033 Score=42.78 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.3
Q ss_pred CCEEEEEcccchHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHh
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK 67 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~ 67 (188)
+-+|+|+|+|.|..+..+++.+.. ..+++.||.+|...+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 359999999999999998887652 35899999999998888887765
No 307
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.45 E-value=0.068 Score=40.35 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCEEEEEcccchHHHHHHHhhCCC----C----CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhh
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPE----D----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLK 90 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~----~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~ 90 (188)
.++++|+....|+++..+.+.+-. . .+|++||+.+=+ ++. .+.-+++|... .+.....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHH
Confidence 468999999999999998886631 1 239999996521 233 24555666432 2222211
Q ss_pred cccCCCceeEEEEeCCcc-----chH---------HHHHHHHhccCcCeEEEEe
Q 029764 91 YSENEGSFDYAFVDADKD-----NYC---------NYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~~~-----~~~---------~~~~~~~~~L~~gG~lv~~ 130 (188)
. +..++.|+|++|+.+. +.. ..+.-....|++||.+|..
T Consensus 110 h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 H-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred H-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 1 2356899999997432 222 2233344799999999874
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.44 E-value=0.21 Score=40.43 Aligned_cols=101 Identities=24% Similarity=0.353 Sum_probs=60.0
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
..++.+||-.|+| .|..+..+|+.. +. +|+++|.+++..+.+++ .|...-+.....+..+.+..+. .
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~ 257 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----G 257 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence 4566788888875 344556667654 44 69999999988777654 3432111111122222232221 2
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
+.+|++|-.... ...++.+.+.++++|.++.-..
T Consensus 258 ~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence 368988743221 3456777889999999887543
No 309
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.42 E-value=0.22 Score=39.89 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=57.1
Q ss_pred cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++.+||-+|+|. |..++.+++......+|+++|.+++.++.+++ .+. ...+ + +. .. ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------ccC
Confidence 4577999999752 33445566642214689999999888777764 221 1111 1 11 11 235
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+|+||=..........++...++|++||.+++-.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 8988743222113456788889999999998754
No 310
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.41 E-value=0.26 Score=39.42 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=65.6
Q ss_pred HHHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764 15 LLRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 92 (188)
Q Consensus 15 l~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 92 (188)
.....++.+||-.|. |.|..++.||+.+. ..++.+-.+++..+.+ .+.|-..-+.+...|..+.+.++.
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t--- 207 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT--- 207 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc---
Confidence 344667889999984 45567888999863 3666666665544433 344543334555566655555542
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
....+|+|+-.. -...+......|+++|.++.-..
T Consensus 208 -~g~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 -GGKGVDVVLDTV----GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred -CCCCceEEEECC----CHHHHHHHHHHhccCCEEEEEec
Confidence 124799998532 23456667889999998887544
No 311
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=0.038 Score=46.45 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=70.8
Q ss_pred CCEEEEEcccchHHHHH---HHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 21 AKKTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
...|+-+|.|.|-..-. .|+......++++||-+|.++-..+. .......++++++.+|-.+..+. ..+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~eq 439 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------REQ 439 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hhh
Confidence 34688899999965444 33433345789999999998876665 22233457899999998765321 267
Q ss_pred eeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.|+++.. ++-+--.+.++.+...|||.|+-|-.
T Consensus 440 ~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 440 ADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 8888643 23344567889999999999876643
No 312
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.41 E-value=0.063 Score=43.41 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHH
Q 029764 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL 62 (188)
Q Consensus 9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 62 (188)
.+++..+....+.+.++|+|.|.|+.+.+++-.+ +..|.+||-+...-+.|+
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 4566667777788899999999999999998765 689999999876655554
No 313
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.39 E-value=0.28 Score=39.51 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=61.3
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+||-.|+| .|..++.+|+.. +. +|+++|.+++..+.+++ .|...-+.....+..+.+.... .
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~ 242 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----G 242 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----C
Confidence 34567789988874 244566677765 44 59999999887777654 3432112222223333333321 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
...+|+|+-.... ...++...+.+++||.+++-..
T Consensus 243 ~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 243 GFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence 2468988743221 2356677889999999987543
No 314
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.28 E-value=0.36 Score=36.58 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=61.3
Q ss_pred cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++.+||-.|+|+ |..++.+++.. +.++++++.+++..+.+++. +....+.....+....+. .. ....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~----~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LT----GGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-Hh----cCCC
Confidence 5677999999885 66777777764 57899999988776665432 321111111122222211 11 2467
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+|+++-.... ......+.+.|+++|.++.-.
T Consensus 202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence 9999864322 145677788999999988643
No 315
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.16 E-value=0.7 Score=33.84 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=63.6
Q ss_pred EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHHHh
Q 029764 23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL 89 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (188)
+|--+|. |+.++.+|..+. .+-+|+++|++++.++..++- +++..-..++.+ ..|..+.+
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI---- 74 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH----
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh----
Confidence 4555666 444443333332 257999999999877766531 111000122332 22222211
Q ss_pred hcccCCCceeEEEEeCC----------ccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 029764 90 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD 159 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (188)
...|++|+.-+ ........+.+.+.++++..+|+......|. .......
T Consensus 75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt---------------t~~~~~~ 133 (185)
T PF03721_consen 75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT---------------TEELLKP 133 (185)
T ss_dssp ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH---------------HHHHHHH
T ss_pred ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee---------------ehHhhhh
Confidence 34688887531 2234667788889999999999988887663 2324555
Q ss_pred HHHHhhcC-CCeEEEEee
Q 029764 160 LNRSLADD-PRVQLSHVA 176 (188)
Q Consensus 160 ~~~~~~~~-~~~~~~~lp 176 (188)
+++..... .+|.....|
T Consensus 134 ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 134 ILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp HHHHHCCTTTCEEEEE--
T ss_pred hhhhhcccccCCeEEECC
Confidence 55543321 456666655
No 316
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.14 E-value=0.054 Score=42.25 Aligned_cols=69 Identities=12% Similarity=-0.010 Sum_probs=49.1
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
+++|+.||.|..+..+...- -..+.++|+++.+++..+.|+.. .++.+|..++...-. ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~-----~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF-----IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc-----CCCCCEEE
Confidence 68999999999988877642 23578899999999988887632 145667655432210 25799999
Q ss_pred EeC
Q 029764 103 VDA 105 (188)
Q Consensus 103 id~ 105 (188)
.+.
T Consensus 68 ~gp 70 (275)
T cd00315 68 GGF 70 (275)
T ss_pred eCC
Confidence 773
No 317
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.1 Score=41.98 Aligned_cols=48 Identities=21% Similarity=0.054 Sum_probs=39.6
Q ss_pred CEEEEEcccchHHHHHHHhhCC-------CCCEEEEEeCCchhHHHHHHHHHhcC
Q 029764 22 KKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKAG 69 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~ 69 (188)
-.++|+|+|.|..+..+++.+. ...++..||+|++....-+++++...
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 4799999999999998887652 25799999999999888888776653
No 318
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=95.00 E-value=0.48 Score=37.71 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=58.8
Q ss_pred CEEEEEcc--cchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 22 KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 22 ~~vLeiG~--g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+||-.|. +.|..++.+|+.. +. +|++++.+++..+.+++. .|...-+.....+..+.+..+. ...+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv 225 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV 225 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence 68888885 5777888888875 55 799998888766655543 3532211111123333333331 2579
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|+|+ |.... ..+..+++.|+++|.++.-
T Consensus 226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 226 DVYF-DNVGG---EISDTVISQMNENSHIILC 253 (345)
T ss_pred eEEE-ECCCc---HHHHHHHHHhccCCEEEEE
Confidence 9888 33221 1247788999999998863
No 319
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.91 E-value=0.52 Score=37.46 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=58.6
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+||-+|+| .|..++.+|+.. +.+ +++++.+++..+.+++ .|...-+.....+ .+.+.+.. .
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~ 228 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----S 228 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----C
Confidence 34567788888764 334555677765 455 9999998887766654 3432111111122 22222221 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
...+|++|-.... ...+....+.|+++|.+++-.
T Consensus 229 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSGN---TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 3479988843222 234566778999999988643
No 320
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.82 E-value=0.7 Score=36.95 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=61.9
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~ 233 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GG 233 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence 34566788888765 4556667777653 3368999998877666654 3432112221223222222321 13
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
..+|+++-.... ...+..+++.|+++|.++.-..
T Consensus 234 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 234 KGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 569988754322 2456788899999999886443
No 321
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=94.80 E-value=0.085 Score=37.21 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=28.4
Q ss_pred EEcccch--HHHHHHH-hhCCCCCEEEEEeCCchhHHHHHHH--HHhc
Q 029764 26 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA 68 (188)
Q Consensus 26 eiG~g~G--~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~ 68 (188)
|||++.| .++..++ +...++.+++++|++|..+...+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 6666654 2344478999999999999999988 5544
No 322
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=94.79 E-value=1.4 Score=33.83 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
..+...++..+-+.+++.. |..-+|+-..+..+.+. .-++..+|+.|+-....+++|.. ..++.+..+|....
T Consensus 74 pa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~ 146 (279)
T COG2961 74 PAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLA 146 (279)
T ss_pred hHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHH
Confidence 4556667777777777766 78888888887777764 67999999999999999999863 45799999999876
Q ss_pred HHHHhhcccCCCceeEEEEeCCc---cchHHHHHHHHhccC--cCeEEEE
Q 029764 85 LDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLK--VGGIAVY 129 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~--~gG~lv~ 129 (188)
+...+. ..+.=-+|+||.+. .++....+.+.+.++ ++|.+.+
T Consensus 147 l~a~LP---P~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 147 LKAHLP---PKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred HhhhCC---CCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 655432 23456799999754 345544444443333 3444443
No 323
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.73 E-value=0.89 Score=35.91 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=61.8
Q ss_pred HHHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029764 16 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS 92 (188)
Q Consensus 16 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~ 92 (188)
....++.+||-.| .+.|..++.+|+.. +.++++++.+++..+.+++ .|...-+..... +..+.....
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---- 203 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---- 203 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence 3455677898888 45777888888875 5689988888877665543 353211111111 222222222
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
..+.+|++| |..-. ..++..++.|+++|.++.-.
T Consensus 204 -~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 204 -SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred -CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEec
Confidence 134799888 33211 24577889999999998643
No 324
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.73 E-value=0.84 Score=36.32 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=62.8
Q ss_pred HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029764 16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS 92 (188)
Q Consensus 16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~ 92 (188)
....++.+||-.|+ +.|..++.+|+.. +.++++++.+++..+.+++. .|...-+..... +..+.+....
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~--- 218 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF--- 218 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC---
Confidence 34556789998885 5677788888875 56888888888776666543 343221221111 2223233321
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..++|++|- ..- ...+..+++.|+++|.++.-
T Consensus 219 --~~gvd~v~d-~~g---~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 --PNGIDIYFD-NVG---GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred --CCCcEEEEE-CCC---HHHHHHHHHHhccCcEEEEe
Confidence 257998883 321 14567888999999998864
No 325
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.66 E-value=0.34 Score=41.15 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=59.3
Q ss_pred cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE---------------EcchH
Q 029764 19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI---------------ESEAL 82 (188)
Q Consensus 19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~d~~ 82 (188)
.++.+++-+|+|. |..++.+++.+ +..|+.+|.+++..+.+++ +|.. .+++- ..+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence 4567999999974 56677777765 5679999999987666654 2321 11111 01111
Q ss_pred HHHHHHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEE
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+...++..+ ....+|+||... ....+.-..+.+.+.+|+|+++|=
T Consensus 235 ~~~~~~~~e--~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAA--QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHH--HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111111110 135799997553 222222356777899999998774
No 326
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.57 E-value=0.64 Score=37.13 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=59.1
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
..++.+||-.|+| .|..++.+|+.. +. .+++++.+++..+.+++ .|...-+.....+ .+.+..+. ..
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~----~~ 226 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL----RE 226 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh----cC
Confidence 3456788888874 344556677765 44 47889988887766543 3432111111112 22222221 13
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
..+|.+++|..-. ...+....+.|++||.+++-..
T Consensus 227 ~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 227 LRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 4688666664221 3467778899999999987643
No 327
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.47 E-value=0.34 Score=33.09 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764 12 MAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 90 (188)
Q Consensus 12 l~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (188)
...+++..+..+|+|+|-|.=. .+..|.+. +..|+++|+++. .+. ..+.++..|..+--..+-
T Consensus 5 a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~iY- 68 (127)
T PF03686_consen 5 AEYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEIY- 68 (127)
T ss_dssp HHHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHHH-
T ss_pred HHHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc---------cCcceeeecccCCCHHHh-
Confidence 3445556677799999998665 44445444 679999999987 111 235678888766322331
Q ss_pred cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...|+|+.--.+......+-.+.+ +-|.-+++.
T Consensus 69 -----~~a~lIYSiRPP~El~~~il~lA~--~v~adlii~ 101 (127)
T PF03686_consen 69 -----EGADLIYSIRPPPELQPPILELAK--KVGADLIIR 101 (127)
T ss_dssp -----TTEEEEEEES--TTSHHHHHHHHH--HHT-EEEEE
T ss_pred -----cCCcEEEEeCCChHHhHHHHHHHH--HhCCCEEEE
Confidence 579999988777676666666655 345555553
No 328
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.37 E-value=0.031 Score=45.70 Aligned_cols=66 Identities=21% Similarity=0.129 Sum_probs=57.6
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc-EEEEEcchHHHHH
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD 86 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~ 86 (188)
..++..|-|+.||.|-.++..+.. +++|++-|.+|++++..+.++..+.+.+. ++++..|+.+++.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 456678999999999999988875 68999999999999999999988877755 9999999988774
No 329
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.34 E-value=0.79 Score=37.40 Aligned_cols=104 Identities=17% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
++.+|+-+|+| .|..++..+..+ +.+|+.+|.+++..+.+.+.+ + ..+.....+. +.+.+. -..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~-~~l~~~------l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---G--GRIHTRYSNA-YEIEDA------VKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCH-HHHHHH------HccC
Confidence 56679999987 566666666665 468999999887655444332 2 1122212222 222232 2578
Q ss_pred eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764 99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 137 (188)
Q Consensus 99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 137 (188)
|+|+.... ...+.-+-+...+.++++++++--.+...|.
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence 99987531 1111112355667789998766533333343
No 330
>PLN02740 Alcohol dehydrogenase-like
Probab=94.27 E-value=0.92 Score=36.92 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=59.6
Q ss_pred HHHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhc
Q 029764 16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKY 91 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~ 91 (188)
....++.+||-+|+| .|..++.+|+.. +. +|+++|.+++.++.+++ .|....+.... .+..+.+..+.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT-- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh--
Confidence 345667789999875 334555667664 44 69999999988777754 34322121111 11223333321
Q ss_pred ccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEec
Q 029764 92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 131 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 131 (188)
.+.+|++|-.... ...+......+++| |.+++-.
T Consensus 266 ---~~g~dvvid~~G~---~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 ---GGGVDYSFECAGN---VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred ---CCCCCEEEECCCC---hHHHHHHHHhhhcCCCEEEEEc
Confidence 2369988754322 24566777888886 8877644
No 331
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.26 E-value=0.57 Score=37.55 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=69.2
Q ss_pred HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029764 16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE 93 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~ 93 (188)
++..++.+|.-+||| .|-.++.-|.... ..+|+++|++++.++.|++. |-..-+..... |..+.+..+.
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T---- 251 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT---- 251 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc----
Confidence 356677899999997 4666677666654 68999999999998888763 43222222112 3444444442
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
.+..|..|-... ..+.+++....+.++|..++-.+.-.+
T Consensus 252 -~gG~d~~~e~~G---~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 252 -DGGADYAFECVG---NVEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred -CCCCCEEEEccC---CHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 347888864321 233677777778889988875544433
No 332
>PLN02827 Alcohol dehydrogenase-like
Probab=94.25 E-value=0.81 Score=37.27 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=58.6
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~ 93 (188)
...++.+||-.|+| .|..++.+|+... ...++++|.+++..+.+++ .|...-+.... .+..+.+.++.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT---- 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence 35567799988864 3445556676643 2368899988887766644 34321111111 12222233321
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEec
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 131 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 131 (188)
.+.+|+|+-.... ...+....+.+++| |.+++-.
T Consensus 261 -~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 -GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence 2368988743222 23466778889998 9998744
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.22 E-value=0.96 Score=36.26 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=60.5
Q ss_pred HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
..++.+|+-.|+|. |..++.+|+.. +.++++++.+++..+.+++ .|...-+.....+..+......+. -...
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~ 236 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKAR 236 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccC
Confidence 45677999999854 66677778775 4689999999988777654 243211211111111222211110 0123
Q ss_pred ceeE---EEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 97 SFDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 97 ~~D~---i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.+|. +++|..- ....++.+.+.|++||.+++-...
T Consensus 237 g~d~~~d~v~d~~g--~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 237 GLRSTGWKIFECSG--SKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCCcCEEEECCC--ChHHHHHHHHHHhcCCeEEEECcC
Confidence 4551 3444321 134566778899999999876543
No 334
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.19 E-value=0.73 Score=32.66 Aligned_cols=94 Identities=17% Similarity=0.093 Sum_probs=59.1
Q ss_pred EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC------CCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
|.-+|+|.+..++....... +.+|+....+++.++..++.-.... ++.++.+ ..|..+.+ ..
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~~ 69 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------ED 69 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------TT
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------Cc
Confidence 56678876665554333222 5689999999888877776533211 1133433 34543332 46
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.|+|++.-+......+++++.+.++++-.+++
T Consensus 70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred ccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 79999988777888999999999988877776
No 335
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.15 E-value=0.043 Score=42.57 Aligned_cols=92 Identities=23% Similarity=0.179 Sum_probs=62.0
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
..+..++|+|||.|-... ..+.+.+++.|.+...+..++.. + -.....+|+..... ...+|
T Consensus 44 ~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~-------~~~s~ 104 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPF-------REESF 104 (293)
T ss_pred CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCC-------CCCcc
Confidence 335689999999996422 11367899999988877766542 1 11456677765422 25789
Q ss_pred eEEEEeCCc------cchHHHHHHHHhccCcCeEEEE
Q 029764 99 DYAFVDADK------DNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|.++.-+.. ......++.+.+.|+|||...+
T Consensus 105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 988755322 2235678899999999997655
No 336
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.11 E-value=1.8 Score=33.47 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++.+||-+|+| .|..++.+|+... ..+|+.+|.+++..+.+++ .|...-+. ..+..+.+..+. ....
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~--~~~~~~~~~~~~----~~~g 187 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAE--PEVLAERQGGLQ----NGRG 187 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecC--chhhHHHHHHHh----CCCC
Confidence 356789888874 3445666777652 2348889988887766655 34321111 111112222221 1346
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+|++|-.... ...++.+.+.++++|.++.-...
T Consensus 188 ~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 188 VDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence 8988753222 34567788999999999875543
No 337
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=1.1 Score=36.73 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCEEEEEcc-cch--HHHHHHHhhCCC-C--CEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764 21 AKKTIEIGV-FTG--YSLLLTALTIPE-D--GQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 93 (188)
Q Consensus 21 ~~~vLeiG~-g~G--~~~~~la~~~~~-~--~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 93 (188)
|..|+=+|- |+| .+...+|..+.+ + .-++|.|. .+.+.+..++|..+.+++-...+...|...+..+-.+. +
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~-f 179 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR-F 179 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH-H
Confidence 334555554 233 233445555432 2 45777784 66788888998887775533334444554433221110 1
Q ss_pred CCCceeEEEEeCC--ccchHHHHHHH---HhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029764 94 NEGSFDYAFVDAD--KDNYCNYHERL---MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 168 (188)
Q Consensus 94 ~~~~~D~i~id~~--~~~~~~~~~~~---~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (188)
..+.||+|++|-. +..-..+++++ .+.++|+-++++-|... |. + .....++|.+.+
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi-GQ---a-----------ae~Qa~aFk~~v---- 240 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI-GQ---A-----------AEAQARAFKETV---- 240 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc-cH---h-----------HHHHHHHHHHhh----
Confidence 2578999999943 33334455554 57899999888766553 10 0 334466666664
Q ss_pred CeEEEEee
Q 029764 169 RVQLSHVA 176 (188)
Q Consensus 169 ~~~~~~lp 176 (188)
++....+.
T Consensus 241 dvg~vIlT 248 (483)
T KOG0780|consen 241 DVGAVILT 248 (483)
T ss_pred ccceEEEE
Confidence 66665553
No 338
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=0.068 Score=43.20 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=68.2
Q ss_pred HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764 13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 92 (188)
Q Consensus 13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 92 (188)
+.++.-.++.+|+|+.|-.|..|..+|...+..+++.+.|.+++.....++.+...|.+. ++...+|.... +...
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t-~~~~--- 280 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNT-ATPE--- 280 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCC-CCcc---
Confidence 455566677899999999999999999988778999999999999999999999888763 66668887654 2221
Q ss_pred cCCCceeEEEEeC
Q 029764 93 ENEGSFDYAFVDA 105 (188)
Q Consensus 93 ~~~~~~D~i~id~ 105 (188)
.......|++|.
T Consensus 281 -~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 281 -KFRDVTYILVDP 292 (413)
T ss_pred -cccceeEEEeCC
Confidence 235566777773
No 339
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.69 E-value=1 Score=35.77 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=28.1
Q ss_pred CceeEEE----EeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 96 GSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 96 ~~~D~i~----id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+.||+|+ +|. .++..++++.+...|+|||+-|=-.++
T Consensus 258 ~~~d~VvTcfFIDT-a~NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDT-AHNILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred CccceEEEEEEeec-hHHHHHHHHHHHHhccCCcEEEeccce
Confidence 4799884 553 457789999999999999987654444
No 340
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.61 E-value=1 Score=35.70 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
+..++.+||-.|+| .|..++.+|+... ..++++++.+++....+++ .+....+.....+..+.+.... ..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~ 234 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GG 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CC
Confidence 34556788887764 4667777888753 2478888877766655543 2321111111222223233321 13
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+|+++-.... ...+...++.|+++|.++.-
T Consensus 235 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence 579988743211 24677778999999998864
No 341
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.52 E-value=1.8 Score=32.03 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=48.1
Q ss_pred HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764 18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
..+..+|+-+|||. |...+..+.... -++++.+|.+. ...+.+.+.+...+-.-+++.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 44567899999974 443333222222 36899999762 3344555566554422234444
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCccchHHHHHHH
Q 029764 78 ESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 117 (188)
Q Consensus 78 ~~d~~~-~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~ 117 (188)
...... .+..+ ...+|+|+...+.......+...
T Consensus 97 ~~~i~~~~~~~~------~~~~D~Vi~~~d~~~~r~~l~~~ 131 (202)
T TIGR02356 97 KERVTAENLELL------INNVDLVLDCTDNFATRYLINDA 131 (202)
T ss_pred hhcCCHHHHHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence 333322 22333 36799988654433333333333
No 342
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.49 E-value=1.2 Score=35.44 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
...++.+||-.|+| .|..++.+|+.. +.++++++.+++..+.+++ .|... ++... +. ..
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~~~--~~---------~~ 221 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGGAY--DT---------PP 221 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecccc--cc---------Cc
Confidence 34567789998864 344556677764 5689999998887666554 35321 11111 10 02
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
+.+|+++..... ...+....+.|++||.+++-..
T Consensus 222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 457876643222 2467788899999999987544
No 343
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=93.43 E-value=1.6 Score=34.54 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=61.9
Q ss_pred HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
....++.+||-.|+|. |..++.+|+.. +.+++++..+++..+.+++ .+...-+.....+..+.+.... .
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~ 224 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----D 224 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----C
Confidence 3445677899888763 67777888875 6788888888777665543 2322112222223223333332 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+++-.... ...+..+++.|+++|.++.-
T Consensus 225 ~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 225 GEGADVVIDATGN---PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 3468999864322 34567788899999988753
No 344
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.43 E-value=2 Score=34.75 Aligned_cols=103 Identities=19% Similarity=0.299 Sum_probs=59.9
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~ 93 (188)
...++.+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++ .|...-+.... .+..+.+.++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 252 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT---- 252 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence 34567789988875 3456666777653 2379999999988777754 34321111111 11222222221
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 132 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 132 (188)
.+.+|+++-.... ...+..+.+.++++ |.+++-..
T Consensus 253 -~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 253 -DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred -CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence 2368988743221 34567778889886 88776543
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.24 E-value=0.78 Score=36.83 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=57.4
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeC---CchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
.++.+|+-+|+| .|..++.+|+.. +.++++++. +++..+.++ +.|.. .+.....+..+ . . .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~-~------~ 235 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-V-K------L 235 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-h-h------h
Confidence 366789988876 355677777775 458999886 455555444 33432 12111111111 1 1 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
...+|+||-.... ...+....+.|++||.+++-..
T Consensus 236 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 236 VGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEec
Confidence 3579988764332 2356778899999999887543
No 346
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.20 E-value=0.37 Score=30.85 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=52.9
Q ss_pred EEEEcccchHHHHHHHhhCC-CC---CEEEEE-eCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 24 TIEIGVFTGYSLLLTALTIP-ED---GQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 24 vLeiG~g~G~~~~~la~~~~-~~---~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
|-=||+ |..+..+++.+- .+ .+++.+ +.+++......+.+ + +.+...+..+.+. ..
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a 62 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA 62 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence 334555 665555555432 13 578844 99998776665543 2 4444445555432 47
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
|+||+...+....+.++++ ..+.++..+|
T Consensus 63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 9999998888888888888 6666766665
No 347
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.11 E-value=0.99 Score=39.04 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=63.1
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-----HHHHHhhc
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKY 91 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~ 91 (188)
.+.+...|||+||..|.+....++.+|.++-|++||+-|=. . .+++..++.|... -+.....
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p-~~~c~t~v~dIttd~cr~~l~k~l~- 107 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------P-IPNCDTLVEDITTDECRSKLRKILK- 107 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------c-CCccchhhhhhhHHHHHHHHHHHHH-
Confidence 35677889999999999999999999988999999986521 1 1223333333221 1222221
Q ss_pred ccCCCceeEEEEeCCccc--------------hHHHHHHHHhccCcCeEEEEeccc
Q 029764 92 SENEGSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
-.+.|+|+.|+.+.- ....++.+...|+.||.++. .++
T Consensus 108 ---t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt-kvf 159 (780)
T KOG1098|consen 108 ---TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT-KVF 159 (780)
T ss_pred ---hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc-ccc
Confidence 245699999864321 11234445578999999543 344
No 348
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=93.09 E-value=0.95 Score=37.27 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=61.3
Q ss_pred HcCCCEEEEEc--ccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhc----CCCCcEEEEE----cchHHHHH
Q 029764 18 LVNAKKTIEIG--VFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLD 86 (188)
Q Consensus 18 ~~~~~~vLeiG--~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~----~d~~~~~~ 86 (188)
..++.+|+-+| .+.|..++.+|+.... ..+|+++|.+++.++.+++.+... |. ...++. .+..+.+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHH
Confidence 34556888886 3467777778876421 237999999999988888753211 21 111222 12323333
Q ss_pred HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+. ....+|+++..... ...+....+.++++|.+++
T Consensus 251 ~~t----~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 251 ELT----GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHh----CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 332 13479988865322 3456778889998876544
No 349
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.89 E-value=2.3 Score=34.82 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHH-------HHHHhcCC-CCcEEEEEcchHH--HH
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL-------PIIKKAGV-DHKINFIESEALS--VL 85 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~-------~~~~~~~~-~~~~~~~~~d~~~--~~ 85 (188)
+..++.....|+|+|.|....+.|.... ...=+|+++.......+. +.....|- .+.++.++++..+ ..
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHH
Confidence 3567778999999999999888877543 345566665443332222 11222333 3557888888754 33
Q ss_pred HHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEEEeccccC
Q 029764 86 DQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLWG 135 (188)
Q Consensus 86 ~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~~~~~ 135 (188)
..+ ....++||+....- ...--++.+...+++|..++-.+.+..
T Consensus 267 ~eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 267 TEI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 344 35678999874322 222234578889999999999887763
No 350
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.79 E-value=2.7 Score=33.26 Aligned_cols=109 Identities=11% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchH-H-HHHHHhhcccCCC
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEAL-S-VLDQLLKYSENEG 96 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~-~-~~~~~~~~~~~~~ 96 (188)
...|+-+|||-= +...--..+++.+++=+|. |+.++.=++.+...+.. ...+.+..|.. + ....+.+.+.+..
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 578999999544 4433222233567777777 77877777777776543 35778888876 3 4444543221122
Q ss_pred ceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEecc
Q 029764 97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
.-=++++.+ ..+....+++.+..++.+|..+++...
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 222344333 455677899999999988888887653
No 351
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.76 E-value=1.7 Score=34.06 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=66.5
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
..++.|+-+|---=.+...++..+| -+|..+|+++..++...+..+..|+. +++.+.-|..+-+|+-. .+.|
T Consensus 151 L~gK~I~vvGDDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kF 222 (354)
T COG1568 151 LEGKEIFVVGDDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKF 222 (354)
T ss_pred cCCCeEEEEcCchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhC
Confidence 3566788888443333333334444 48999999999999999999998874 58888888877666532 4789
Q ss_pred eEEEEeCCcc--chHHHHHHHHhccCcC
Q 029764 99 DYAFVDADKD--NYCNYHERLMKLLKVG 124 (188)
Q Consensus 99 D~i~id~~~~--~~~~~~~~~~~~L~~g 124 (188)
|+++-|.+.. ....|+.+=...|+.-
T Consensus 223 DvfiTDPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 223 DVFITDPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred CeeecCchhhHHHHHHHHhccHHHhcCC
Confidence 9999885432 2334444444556554
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.72 E-value=2 Score=35.69 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=56.5
Q ss_pred cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++++|+-+|+|. |......++.. +.+|+.+|.++.....|++ .|. +.. +..+ . ...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e----~------v~~ 257 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE----A------VKE 257 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH----H------HcC
Confidence 4678999999984 55555566654 5689999999887766654 242 211 1111 1 145
Q ss_pred eeEEEEeCCccchHHHHHH-HHhccCcCeEEEEec
Q 029764 98 FDYAFVDADKDNYCNYHER-LMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~-~~~~L~~gG~lv~~~ 131 (188)
.|+|+..... ...+.. ..+.+++||.++.-.
T Consensus 258 aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 258 GDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence 7988864322 334554 478999999987654
No 353
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=92.71 E-value=4.3 Score=33.39 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
..|.+..+=+.++.+..+..++-..||.+..+..+...++++.+|+..+. -.......++.+...|. .+.+...+-.
T Consensus 53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~ 130 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDL 130 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSH
T ss_pred ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhH
Confidence 35777777788888888888999999888886666666666788888763 34455556666666664 3555544333
Q ss_pred HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe--EEEEecccc
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG--IAVYDNTLW 134 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG--~lv~~~~~~ 134 (188)
+.+.... .....+||+... +......++.+.++.++.| .+++||++.
T Consensus 131 ~~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 131 EALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp HHHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred HHHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence 4333332 357899999853 3223345566666666665 566666553
No 354
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.67 E-value=0.91 Score=32.66 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=58.2
Q ss_pred EcccchHHHHHHHhhCCCCCEEEEEeC--CchhHH---HHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccCCCceeE
Q 029764 27 IGVFTGYSLLLTALTIPEDGQITAIDV--NRETYE---IGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 27 iG~g~G~~~~~la~~~~~~~~v~~iD~--~~~~~~---~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+|=|-=+.+..|++......++++.-. ..+..+ .+.++++.+. ...+.++. -|+.+....+.- ....||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~~~---~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHFRL---KNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCcccccccc---cCCcCCE
Confidence 455556778888887754556665544 333332 2335555442 12244333 466544332211 2478999
Q ss_pred EEEeCCccc----------------hHHHHHHHHhccCcCeEEEEe
Q 029764 101 AFVDADKDN----------------YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 101 i~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~ 130 (188)
|+...++.. ...++..+.++|+++|.+.+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998743322 346788888999999998884
No 355
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.67 E-value=3.4 Score=33.37 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=59.9
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS 92 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~ 92 (188)
...++.+||-.|+| .|..++.+|+.. +. ++++++.+++..+.+++ .|...-+..... +..+.+.++.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~--- 253 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT--- 253 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh---
Confidence 34567788888864 344556677765 44 79999999888776654 343211211111 1223333321
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 132 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 132 (188)
.+.+|+|+-.... ...+....+.++++ |.++.-..
T Consensus 254 --~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 --DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred --CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence 2479988743221 24567778899887 88876543
No 356
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.64 E-value=2.9 Score=33.75 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=47.3
Q ss_pred HcCCCEEEEEcccc-hHHH-HHHHhhCCCCCEEEEEeCCc---------------------hhHHHHHHHHHhcCCCCcE
Q 029764 18 LVNAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKI 74 (188)
Q Consensus 18 ~~~~~~vLeiG~g~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~ 74 (188)
..+..+|+-+|||. |... ..|+.. . -++++.+|.+. ...+.+++.+...+-.-++
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~a-G-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRA-G-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 33557899999973 3322 223332 1 36899999864 2345556666665533345
Q ss_pred EEEEcchH-HHHHHHhhcccCCCceeEEEEeCCc
Q 029764 75 NFIESEAL-SVLDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 75 ~~~~~d~~-~~~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
+.+..+.. +.+..+ ...+|+|+...+.
T Consensus 99 ~~~~~~~~~~~~~~~------~~~~DlVid~~D~ 126 (338)
T PRK12475 99 VPVVTDVTVEELEEL------VKEVDLIIDATDN 126 (338)
T ss_pred EEEeccCCHHHHHHH------hcCCCEEEEcCCC
Confidence 55655543 233343 3579998876543
No 357
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.44 E-value=0.79 Score=37.59 Aligned_cols=83 Identities=22% Similarity=0.177 Sum_probs=50.4
Q ss_pred CEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCc
Q 029764 22 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS 97 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~ 97 (188)
++||-|||| ..+...|..+. .+.+|+..|-+++....+.+... .+++.++-|+.+. +..+. .+
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li------~~ 68 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI------KD 68 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH------hc
Confidence 478999994 44444333321 13799999999888776665431 2677878777553 34443 55
Q ss_pred eeEEEEeCCccchHHHHHHH
Q 029764 98 FDYAFVDADKDNYCNYHERL 117 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~ 117 (188)
+|+|+.-.+......+++.|
T Consensus 69 ~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 69 FDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred CCEEEEeCCchhhHHHHHHH
Confidence 69998765443333333333
No 358
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=92.37 E-value=3 Score=32.85 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=54.7
Q ss_pred CCCEEEEE--c-ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 20 NAKKTIEI--G-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 20 ~~~~vLei--G-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
++..++=+ | .+.|..++.+|+.. +.++++++.+++..+.+++ .|...-+.....+..+.+.++. ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~ 211 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL 211 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence 34444443 3 34566677788765 5689999988887776654 3432212211223333333322 124
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.+|+++-.... ......++.++++|.++.-.
T Consensus 212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCcEEEECCCc----HHHHHHHHhhCCCCEEEEEE
Confidence 68988743221 22345578889999987743
No 359
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=92.36 E-value=3.4 Score=32.85 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=57.2
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
..++.+||-.|+| .|..++.+|+... ..++++++.+++....+++ .+...-+.....+....+..+. ...
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~ 234 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence 4456677666653 3344555666642 2678888888776665553 3432222322233323233332 135
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+|+++- .. .....++.+.+.|+++|.++.-
T Consensus 235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 235 GVDVVIE-AV--GIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEEe
Confidence 6998873 32 1233577888999999998853
No 360
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.36 E-value=2.8 Score=33.47 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=60.4
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+||-.|+| .|..++.+|+.. +. +|+.++.+++..+.+++ .+...-+.....+..+.+.++. .
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~ 238 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----G 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----C
Confidence 34566788888753 344556667664 45 78999888887776644 2432112222223333333331 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
...+|+++-.... ...++.+++.|+++|.++.-..
T Consensus 239 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 239 GGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence 2459998854321 2356778899999999887543
No 361
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.31 E-value=0.69 Score=36.46 Aligned_cols=67 Identities=13% Similarity=-0.016 Sum_probs=48.9
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
+++|+.||.|..+.-+-..- -..+.++|+++.+.+..+.|+. ....+|..++..... ...+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence 68999999999999887752 2468899999999998888873 677888876543321 11599998
Q ss_pred Ee
Q 029764 103 VD 104 (188)
Q Consensus 103 id 104 (188)
..
T Consensus 67 gg 68 (335)
T PF00145_consen 67 GG 68 (335)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 362
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=92.31 E-value=4 Score=32.22 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=60.4
Q ss_pred HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029764 16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE 93 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~ 93 (188)
+...++.+||-.|+| .|..++.+|+... +.++++++.+++..+.+++ .+...-+.... .+..+.+...
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~----- 227 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK----- 227 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh-----
Confidence 345566788888753 4556666777532 6689999999887777643 34321111111 1112222222
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+.+|.++.+... ...++.+++.|+++|.++.-
T Consensus 228 -~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 228 -TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred -cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence 2368877776432 34578889999999998864
No 363
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.11 E-value=3.1 Score=33.12 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=58.4
Q ss_pred HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch---HHHHHHHhhc
Q 029764 17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKY 91 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~ 91 (188)
...++.+||-.|+|. |..++.+|+.. +.+ ++.++.+++..+.+++ .+...-+.....+. .+.+....
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~-- 230 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL-- 230 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh--
Confidence 445667777777654 66777788875 445 8888888777665544 23221111111121 12222221
Q ss_pred ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
....+|+|+-.... ...+...++.|+++|.++.-
T Consensus 231 --~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 --GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred --CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 13469988854322 22567778999999998864
No 364
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.04 E-value=1.1 Score=35.42 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=53.8
Q ss_pred CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
++.+++-+|+| .|..++.+|+... ...|+.+|.+++.++.+++. . .+ +..+. . ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~ 201 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDY 201 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCC
Confidence 55678888865 4566777777653 33577788887766554431 1 11 11110 0 2568
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
|+||=.... ...++.+.+.++++|.+++-..
T Consensus 202 Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 202 RAIYDASGD---PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CEEEECCCC---HHHHHHHHHhhhcCcEEEEEee
Confidence 988743222 3456788899999999997543
No 365
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.99 E-value=4.4 Score=32.73 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=54.6
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++.+||-.|+| .|..++.+|+.. +.+++.++.+++....+ .+..|.. .++.....+.+... .+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~ 247 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGT 247 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCC
Confidence 456788888875 445666677765 56788888776543222 1234432 12221111222222 135
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
+|++|-... ....++.+++.|++||.++.-.
T Consensus 248 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 248 MDYIIDTVS---AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence 898883222 2335677889999999988654
No 366
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.98 E-value=0.49 Score=33.97 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=32.0
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 63 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 63 (188)
..+|.+|+=+|.| .|..++.++..+ +.+++..|..++..+..+.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES 61 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence 4567899999998 567788888887 5799999998876665444
No 367
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.98 E-value=3.1 Score=34.19 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=60.6
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS 92 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 92 (188)
...++.+||-.|+| .|..++.+|+... ...++.+|.+++.++.+++ .|.. .+.. .+..+.+.++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~--- 250 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQIL--- 250 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHc---
Confidence 34566777777764 3445566777653 2346667888777776665 3431 2221 12323333321
Q ss_pred cCCCceeEEEEeCCccc-----------hHHHHHHHHhccCcCeEEEEeccc
Q 029764 93 ENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
....+|++|-...... ....++.+.+.+++||.+++-...
T Consensus 251 -~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 251 -GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred -CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 1246898875432211 124678888999999999985543
No 368
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.91 E-value=6.3 Score=32.52 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc--------
Q 029764 22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-------- 92 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------- 92 (188)
.+|--+|- |+.++.+|..+. .+.+|+++|+++..++.... | ...+..-+....+......+
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 56777776 565555554443 25799999999988775543 1 22333333322233322221
Q ss_pred cCCCceeEEEEeC----------CccchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764 93 ENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 137 (188)
Q Consensus 93 ~~~~~~D~i~id~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 137 (188)
.+...-|++++.- +.+......+.+.+.|++|-.+++..+.++|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 0112456666542 11223456677789999999999999998774
No 369
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.89 E-value=1.5 Score=34.57 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=48.8
Q ss_pred CEEEEEcccchHHHHHHHhhCCC-C--CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPE-D--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~-~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+|.=||+|. .+..++..+.. + .+|+++|.+++..+.+++ .+... . ...+..+. ....
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~a 67 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGA 67 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCC
Confidence 4688888764 33333333221 2 379999999887665543 23211 1 11221111 1457
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
|+|++.........+++.+.+.++++..++
T Consensus 68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 888887655555566666667777776544
No 370
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.80 E-value=3.4 Score=33.02 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=64.6
Q ss_pred HHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE--EcchHHHHHHHhhc
Q 029764 15 LLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKY 91 (188)
Q Consensus 15 l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~ 91 (188)
.+...++.++.-+|.|.=. +.+.-|+... .++|++||++++..+.|++. |..+-+... .....+.+.+.-
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT-- 259 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT-- 259 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh--
Confidence 4567788899999987533 3334444433 68999999999999888764 433222221 123445555542
Q ss_pred ccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecccc
Q 029764 92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNTLW 134 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~~ 134 (188)
++.+|+-|=... ....+.++....++| |.-++-.+..
T Consensus 260 ---dgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 260 ---DGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred ---cCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 578998884321 133455555666777 7655544443
No 371
>PRK08114 cystathionine beta-lyase; Provisional
Probab=91.78 E-value=6.5 Score=32.45 Aligned_cols=128 Identities=10% Similarity=0.080 Sum_probs=74.6
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
.+|....+=..++.+..+...+-..+|++.....+...+.++.+|++.+. -.......++.+++.|. ++.++.....
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~ 137 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG 137 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence 35666667777777888888999999887776555544565778887653 33455566666666664 3555443222
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCc---CeEEEEeccccCccc
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV---GGIAVYDNTLWGGTV 138 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~---gG~lv~~~~~~~g~~ 138 (188)
+.+.... ...-.+|++.... ......++.+.++.+. |-.+++|++...+..
T Consensus 138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~ 193 (395)
T PRK08114 138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL 193 (395)
T ss_pred HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence 3333322 2345789888532 1111233444444444 457888887755443
No 372
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.78 E-value=4.6 Score=32.58 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=58.6
Q ss_pred HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcc
Q 029764 16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS 92 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~ 92 (188)
....++.+||-.|+| .|..++.+|+... ..++++++.+++..+.+++ .|...-+..... +..+.+.++.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 254 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT--- 254 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence 345567788888864 3345556777643 2379999999887776644 343211211111 1222233321
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 132 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 132 (188)
.+.+|+++-.... ...+....+.+++| |.+++-..
T Consensus 255 --~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 --GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred --CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence 2368877643211 33556677888996 88887543
No 373
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.69 E-value=3 Score=33.61 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=59.1
Q ss_pred HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
...++.+||-.|+|. |..++.+|+... ..++++++.+++....+++ .+...-+.....+..+.+..+. .
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~ 252 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----G 252 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----C
Confidence 345667888887643 566677777753 2369999998877665544 2321111111112223333321 2
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+|+|+-.... ...+..+++.++++|.++.-
T Consensus 253 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALDTTGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence 568988753322 23567788999999988864
No 374
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.63 E-value=4.6 Score=30.47 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=45.3
Q ss_pred HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCC-------------------chhHHHHHHHHHhcCCCCcEEEE
Q 029764 18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
.....+|+-+|||. |...+..+.... -++++.+|.+ ....+.+++.+.+.+-.-+++.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 33457899999973 433333222222 4688888653 23445566666665533345555
Q ss_pred Ecch-HHHHHHHhhcccCCCceeEEEEeCCc
Q 029764 78 ESEA-LSVLDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 78 ~~d~-~~~~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
.... .+.+..+ ...+|+|+...+.
T Consensus 97 ~~~i~~~~~~~~------~~~~DvVi~~~d~ 121 (228)
T cd00757 97 NERLDAENAEEL------IAGYDLVLDCTDN 121 (228)
T ss_pred cceeCHHHHHHH------HhCCCEEEEcCCC
Confidence 4443 1223333 2569999876543
No 375
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.58 E-value=0.12 Score=34.29 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=27.6
Q ss_pred ceeEEEEeCC---------ccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 97 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 97 ~~D~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
.||+|++=.. ......+++.+..+|+|||.+|+.--.|..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s 49 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS 49 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence 4899986531 234567999999999999999997666533
No 376
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.54 E-value=0.99 Score=34.96 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=46.6
Q ss_pred HHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764 9 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 81 (188)
Q Consensus 9 ~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 81 (188)
+.++..+.. ..+...++|.|||.|..+.+++..++ +...++.||-.....+.-+. +........++-+..|.
T Consensus 4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~-~~~~~~~~~~~R~riDI 82 (259)
T PF05206_consen 4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNK-IRKDESEPKFERLRIDI 82 (259)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhh-hhccCCCCceEEEEEEe
Confidence 344554443 24566899999999999999999884 25789999986554433332 33322112355555565
Q ss_pred HH
Q 029764 82 LS 83 (188)
Q Consensus 82 ~~ 83 (188)
.+
T Consensus 83 ~d 84 (259)
T PF05206_consen 83 KD 84 (259)
T ss_pred ec
Confidence 55
No 377
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=91.45 E-value=0.44 Score=37.85 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=51.1
Q ss_pred EEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCceeEEE
Q 029764 25 IEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 25 LeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~i~ 102 (188)
+|||+ |.+.++-+... ..+-..+++|++......|+.+..+++++..+.+++.+..+. +..-... .....||++.
T Consensus 107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcM 183 (419)
T KOG2912|consen 107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCM 183 (419)
T ss_pred eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEe
Confidence 67777 55555544332 224678999999999999999999999998888887766542 2221111 1133577777
Q ss_pred Ee
Q 029764 103 VD 104 (188)
Q Consensus 103 id 104 (188)
++
T Consensus 184 cN 185 (419)
T KOG2912|consen 184 CN 185 (419)
T ss_pred cC
Confidence 65
No 378
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.44 E-value=6.1 Score=31.40 Aligned_cols=97 Identities=22% Similarity=0.130 Sum_probs=52.9
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
.++.+|+-+|+ |..+..+++.+. ...+|+.++.+++......+. .+. .... ..+. .+. ..
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~---~g~----~~~~--~~~~-~~~------l~ 237 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE---LGG----NAVP--LDEL-LEL------LN 237 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---cCC----eEEe--HHHH-HHH------Hh
Confidence 46789999998 555544444332 135788899987654332222 232 2222 1122 222 24
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.+|+||.......+...+.......+.++.+++|-..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 6899998765444434444444433345777776554
No 379
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.38 E-value=3.1 Score=28.00 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=56.2
Q ss_pred HHHHHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764 12 MAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 90 (188)
Q Consensus 12 l~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (188)
...++......+|+|+|-|.=. .+..+++. +..++++|+++. .+ + ..+.+...|..+---.+
T Consensus 5 a~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------~--~g~~~v~DDitnP~~~i-- 67 (129)
T COG1255 5 AEYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------P--EGLRFVVDDITNPNISI-- 67 (129)
T ss_pred HHHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------c--ccceEEEccCCCccHHH--
Confidence 3445566777799999986543 44555553 679999999876 11 1 23778888876532222
Q ss_pred cccCCCceeEEEEeCCccchHHHHHHHHhcc
Q 029764 91 YSENEGSFDYAFVDADKDNYCNYHERLMKLL 121 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L 121 (188)
=...|+|+.--++......+-.+.+.+
T Consensus 68 ----Y~~A~lIYSiRpppEl~~~ildva~aV 94 (129)
T COG1255 68 ----YEGADLIYSIRPPPELQSAILDVAKAV 94 (129)
T ss_pred ----hhCccceeecCCCHHHHHHHHHHHHhh
Confidence 257899998765555555444444433
No 380
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.33 E-value=5.1 Score=32.32 Aligned_cols=103 Identities=20% Similarity=0.338 Sum_probs=59.0
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~ 93 (188)
...++.+||-+|+| .|..++.+|+... ..+|++++.+++..+.+++ .+...-+..... +..+.+..+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~---- 251 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT---- 251 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh----
Confidence 34567788888864 3445566777653 2379999998887776654 343211111111 1122233321
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 132 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 132 (188)
...+|+|+-.... ...+...++.++++ |.++.-..
T Consensus 252 -~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 -GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence 2468988743221 24567778889885 88876443
No 381
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.30 E-value=0.68 Score=36.67 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=65.7
Q ss_pred CEEEEEcccchHHHHHHHhhCC-------------------CCCEEEEEeCCc--hhHHHHHHHHHhc------------
Q 029764 22 KKTIEIGVFTGYSLLLTALTIP-------------------EDGQITAIDVNR--ETYEIGLPIIKKA------------ 68 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~-------------------~~~~v~~iD~~~--~~~~~a~~~~~~~------------ 68 (188)
.+||-||.|.|.-.+.+|..+. +...++.||+.+ ..++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999988777777661 114899999844 2333333333322
Q ss_pred CC--C--CcEEEEEcchHHHHH-HHhhcccCCCceeEEEE--------eCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 69 GV--D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFV--------DADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 69 ~~--~--~~~~~~~~d~~~~~~-~~~~~~~~~~~~D~i~i--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
.. + -++.|.+.|+..... ++... ......++|-+ .........++..+-..+++|.++++.|.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 146788888765322 11100 00124566511 12244556888899999999999888653
No 382
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.23 E-value=3.5 Score=28.24 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=47.4
Q ss_pred CCEEEEEccc-chHHHHH-HHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEEc
Q 029764 21 AKKTIEIGVF-TGYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 79 (188)
Q Consensus 21 ~~~vLeiG~g-~G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
..+|+=+|+| .|...+. |+.. . -++++.+|.+. ...+.+++.+.+.+..-+++.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-G-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-T-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-C-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 4689999996 4443333 3332 2 46889888632 344566777776554445666666
Q ss_pred ch-HHHHHHHhhcccCCCceeEEEEeCCccc
Q 029764 80 EA-LSVLDQLLKYSENEGSFDYAFVDADKDN 109 (188)
Q Consensus 80 d~-~~~~~~~~~~~~~~~~~D~i~id~~~~~ 109 (188)
+. .+....+. ..+|+|+...+...
T Consensus 80 ~~~~~~~~~~~------~~~d~vi~~~d~~~ 104 (135)
T PF00899_consen 80 KIDEENIEELL------KDYDIVIDCVDSLA 104 (135)
T ss_dssp HCSHHHHHHHH------HTSSEEEEESSSHH
T ss_pred ccccccccccc------cCCCEEEEecCCHH
Confidence 65 23444442 57899987654433
No 383
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.17 E-value=0.42 Score=36.06 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=45.3
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.-|+|||.|.|..+..+..+- ..++..+|.++.++.-.+-..+... .+..++++|+..
T Consensus 52 ~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred ceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 469999999999999998763 3589999999998887766555433 367888888764
No 384
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.05 E-value=1.1 Score=34.50 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=45.6
Q ss_pred HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHH
Q 029764 36 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 115 (188)
Q Consensus 36 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~ 115 (188)
..+.+..+ ..+|+++|.+++.++.|++. |..+ -...+ .+. + ..+|+|++..+......+++
T Consensus 3 ~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~-~~~---~-------~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 3 LALRKAGP-DVEVYGYDRDPETLEAALEL----GIID---EASTD-IEA---V-------EDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSS---EEESH-HHH---G-------GCCSEEEE-S-HHHHHHHHH
T ss_pred HHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCee---eccCC-HhH---h-------cCCCEEEEcCCHHHHHHHHH
Confidence 34444433 68999999999987766542 4332 12222 222 1 45699999888878888888
Q ss_pred HHHhccCcCeEEE
Q 029764 116 RLMKLLKVGGIAV 128 (188)
Q Consensus 116 ~~~~~L~~gG~lv 128 (188)
++.+.+++|++++
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 8888888876554
No 385
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=91.03 E-value=4.3 Score=32.66 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=56.4
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
.++.+||-.|+| .|..+..+|+.. +.+ +++++.+++..+.+++ .+...-+.....+..+.+.... ...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~ 255 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGR 255 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCC
Confidence 456677777664 555666677765 445 8888888777665543 2432111111112222222221 135
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+|+|+-..... ..+..+++.|+++|.++.-
T Consensus 256 ~~d~vld~vg~~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 256 GVDVVVEALGKP---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCCEEEEeCCCH---HHHHHHHHHHhcCCEEEEE
Confidence 699998432221 3567788999999988763
No 386
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.01 E-value=3.6 Score=32.46 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=47.1
Q ss_pred EEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 23 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 23 ~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
+||-+||| .|...+..+.... -++++.+|.+. ...+.|.+.+.+.+-.-+++.+..+..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47888886 3433333222222 46888888532 233455566665553345666666554
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCccchHHHHHH
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 116 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~ 116 (188)
+...++ ..+||+|+...+......++..
T Consensus 80 ~~~~~f------~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 80 DKDEEF------YRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred chhHHH------hcCCCEEEECCCCHHHHHHHHH
Confidence 443344 3689999876543333334444
No 387
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.00 E-value=2 Score=33.94 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=53.9
Q ss_pred CEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 22 KKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 22 ~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
.+|+=+|+| .|+.+..|++. +..|+.++-.++.++..++. .|+ .+.........+.........+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGL----TLVEQGQASLYAIPAETADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCe----EEeeCCcceeeccCCCCcccccccC
Confidence 368888886 23455555553 46788998876555444331 121 1111000000000000000135899
Q ss_pred EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
+||+..-..+..+.++.+.+.+.++..+++
T Consensus 73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 73 RLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 999986555567788888899999987654
No 388
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.87 E-value=1.2 Score=37.38 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=62.7
Q ss_pred EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
+++.+|||.-..+..+-... -..|+.+|.|+-.++.....-.. -..-..+...|..... + ++++||+++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~--f-----edESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLV--F-----EDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhcc--C-----CCcceeEEE
Confidence 79999998776666655432 24799999999887766543221 1234667777765532 2 257788776
Q ss_pred EeC-------------CccchHHHHHHHHhccCcCeEEEE
Q 029764 103 VDA-------------DKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 103 id~-------------~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.-+ +..+....+....+++++||..+.
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 321 122345667888899999998554
No 389
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.84 E-value=9.2 Score=32.41 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=54.9
Q ss_pred EEEEEcccchHHHHH--HHhhCCCCCEEEEEeCCchhHHHHHHHHHh---cCCC--------CcEEEEEcchHHHHHHHh
Q 029764 23 KTIEIGVFTGYSLLL--TALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVD--------HKINFIESEALSVLDQLL 89 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~--la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~--------~~~~~~~~d~~~~~~~~~ 89 (188)
+|.-+|+|....... ||..- .+.+|+++|.+++.++..++.... .++. .++.+ ..|..+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~----- 75 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKC-PDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKH----- 75 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHH-----
Confidence 467778765443333 33221 146799999999987765542100 0000 01111 1111111
Q ss_pred hcccCCCceeEEEEeCC--c-------------cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 90 KYSENEGSFDYAFVDAD--K-------------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~--~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
-...|++|+.-+ . .......+.+.+.|++|-.+|+..+...|
T Consensus 76 -----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 76 -----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred -----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 135688877521 1 12345667777889988888887777655
No 390
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.80 E-value=6.5 Score=30.60 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=54.0
Q ss_pred CEEEEEcccc--hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH-------HhcCC-C--------CcEEEEEcchHH
Q 029764 22 KKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-------KKAGV-D--------HKINFIESEALS 83 (188)
Q Consensus 22 ~~vLeiG~g~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-------~~~~~-~--------~~~~~~~~d~~~ 83 (188)
++|--||+|. +..+..++.. +.+|+.+|.+++.++.+++.+ .+.+. . .++.+ ..|. +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~ 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-D 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-H
Confidence 3577788862 2333334432 568999999999887655332 22221 1 02221 2221 1
Q ss_pred HHHHHhhcccCCCceeEEEEeCCccc--hHHHHHHHHhccCcCeEEEE
Q 029764 84 VLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG~lv~ 129 (188)
. ....|+|+....... ...+++.+.+.++++..++.
T Consensus 79 ---~-------~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 79 ---D-------LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ---H-------hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 156799998754322 25788888888998887743
No 391
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.59 E-value=2.9 Score=34.25 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHHh
Q 029764 11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQLL 89 (188)
Q Consensus 11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~ 89 (188)
+|..+.......+|+-++=..|..+++++.+-+ +.+--+--.....++|++.++++.. ++++... +. +
T Consensus 35 ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~--~~---~- 103 (378)
T PRK15001 35 LLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDST--AD---Y- 103 (378)
T ss_pred HHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeeccc--cc---c-
Confidence 445554433223799999999999999995422 2221122233455778888887643 5544322 22 2
Q ss_pred hcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEEEec
Q 029764 90 KYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.+.+|+|++-.++. .....+..+.+.|.+|+.+++-.
T Consensus 104 -----~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 104 -----PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred -----cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 35699999876543 34456677788999999987643
No 392
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=90.58 E-value=6.8 Score=32.67 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=60.1
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh---cCC-----CCcEEEEEcchHHHHHHHhhc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY 91 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~~~~~~~d~~~~~~~~~~~ 91 (188)
++.+|-=||. |+.+..+|..+..+.+|+++|++++.++..++-... .++ ..+..+ ..+. +.
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~~------- 73 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-EK------- 73 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-HH-------
Confidence 3456777766 777777777776567899999999887766521100 000 001111 1111 11
Q ss_pred ccCCCceeEEEEeCCc-------cc---hHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 92 SENEGSFDYAFVDADK-------DN---YCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~-------~~---~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
....|++|+.-+. .+ .....+.+.+.|++|.++|...+..+|
T Consensus 74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 1467888876321 12 223345667889999888887777644
No 393
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.53 E-value=4.6 Score=32.01 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
...++.+||-.|+| .|..+..+|+.. +.+++.++.+++..+.+++ .|...-+.....+..+.+.. .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~-------~ 226 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQE-------L 226 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHh-------c
Confidence 44556788888853 344556677764 5689999988877666643 34321111111222222222 1
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+|+++-... ....++..++.|+++|.++.-
T Consensus 227 ~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 227 GGAKLILATAP---NAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCCCEEEECCC---chHHHHHHHHHcccCCEEEEE
Confidence 45898874211 134567788999999988864
No 394
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.50 E-value=4.1 Score=33.86 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=57.3
Q ss_pred CCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCc
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS 97 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~ 97 (188)
.++++=+|+ |..+..+++.+.. +..++.+|.+++.++.+++.. ..+.++.+|+.+. +... ....
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~ 297 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE 297 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence 467998877 7777777776643 578999999999877666542 2356788887543 3222 2457
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEE
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIA 127 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~l 127 (188)
+|.+++..+.....-....+.+.+.+.-++
T Consensus 298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii 327 (453)
T PRK09496 298 ADAFIALTNDDEANILSSLLAKRLGAKKVI 327 (453)
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCeEE
Confidence 888887543322222223333445444333
No 395
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.40 E-value=0.94 Score=36.09 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=46.5
Q ss_pred EEEEcccchHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764 24 TIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 102 (188)
Q Consensus 24 vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 102 (188)
|+|+.||.|..+.-+-.+ +.+ +.++|+++.+.+..+.|+. + .++.+|..++...- ...+|+++
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEE
Confidence 589999999998888664 444 5679999999888887752 2 34567876654321 25689987
Q ss_pred Ee
Q 029764 103 VD 104 (188)
Q Consensus 103 id 104 (188)
..
T Consensus 65 gg 66 (315)
T TIGR00675 65 GG 66 (315)
T ss_pred ec
Confidence 65
No 396
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.36 E-value=1.6 Score=35.18 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=55.7
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cCCC------CcEEEEEcchHHHHHHHhhcc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVD------HKINFIESEALSVLDQLLKYS 92 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~------~~~~~~~~d~~~~~~~~~~~~ 92 (188)
...+|.=||+|.-..++ |..+...+.++....+++..+..++.-.. ..+. .++.. ..|..+.
T Consensus 6 ~~mkI~IiGaGa~G~al--A~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a-------- 74 (341)
T PRK12439 6 REPKVVVLGGGSWGTTV--ASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA-------- 74 (341)
T ss_pred CCCeEEEECCCHHHHHH--HHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH--------
Confidence 44578889986544433 33222233667777777776666543110 0111 12221 2232221
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
....|+|++..........++.+.+.++++..++
T Consensus 75 --~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 75 --ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred --HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 1567999998777778888999998898887544
No 397
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.36 E-value=6.8 Score=31.61 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=45.2
Q ss_pred HcCCCEEEEEcccc-hHHH-HHHHhhCCCCCEEEEEeCCc---------------------hhHHHHHHHHHhcCCCCcE
Q 029764 18 LVNAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKI 74 (188)
Q Consensus 18 ~~~~~~vLeiG~g~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~ 74 (188)
.....+|+-+|||. |... ..|+.. . -++++.+|.+. ...+.+++.+.+.+-.-++
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 33556899999973 3332 233332 2 46899999863 2334455666655433335
Q ss_pred EEEEcchHH-HHHHHhhcccCCCceeEEEEeCC
Q 029764 75 NFIESEALS-VLDQLLKYSENEGSFDYAFVDAD 106 (188)
Q Consensus 75 ~~~~~d~~~-~~~~~~~~~~~~~~~D~i~id~~ 106 (188)
+.+..+... .+..+ ...||+|+...+
T Consensus 99 ~~~~~~~~~~~~~~~------~~~~DlVid~~D 125 (339)
T PRK07688 99 EAIVQDVTAEELEEL------VTGVDLIIDATD 125 (339)
T ss_pred EEEeccCCHHHHHHH------HcCCCEEEEcCC
Confidence 555554422 22333 267999887543
No 398
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.34 E-value=2.8 Score=33.23 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=56.9
Q ss_pred CCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 20 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 20 ~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
++.+||-.|+|. |..++.+|+.. +. ++++++.+++..+.+++ .+.. .++..+... +..+.. ..+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~ 231 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGD 231 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCC
Confidence 667888888764 66777777765 44 78899888777665443 2321 222221111 112211 1245
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+|+++-.... ...++..++.|+++|.++.-
T Consensus 232 vd~vld~~g~---~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 232 FDVVFEASGA---PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ccEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 8998854321 23567788999999998863
No 399
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=90.24 E-value=4.4 Score=32.93 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=55.9
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcc
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS 92 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~ 92 (188)
..++.+||-.|+| .|..++.+|+.. +. ++++++.+++..+.+++ .+...-+..... +..+.+..+.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~--G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~--- 271 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAA--GASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT--- 271 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc---
Confidence 3455677777664 233445566654 44 79999888775544443 343211111111 2223233332
Q ss_pred cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
....+|+|+ +..- .....++.+++.|+++|.++.-
T Consensus 272 -~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 -KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred -CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence 135699887 4322 2234577788999999998864
No 400
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.21 E-value=6.4 Score=31.74 Aligned_cols=101 Identities=21% Similarity=0.352 Sum_probs=57.4
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~ 93 (188)
...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++ .+....+..... +..+.+.++.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---- 250 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---- 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence 34566788888764 3445555677653 2358888888877766643 343221222122 2222222321
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccC-cCeEEEEe
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD 130 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~ 130 (188)
.+.+|+++-... ....+...++.|+ ++|.++.-
T Consensus 251 -~~~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 -DGGVDYAFEVIG---SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -CCCCcEEEECCC---CHHHHHHHHHHhccCCCEEEEE
Confidence 256898884221 1345677788899 99988864
No 401
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.18 E-value=1.6 Score=38.08 Aligned_cols=93 Identities=10% Similarity=0.004 Sum_probs=57.8
Q ss_pred CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764 22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 98 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~ 98 (188)
.+|+=+| .|..+..+++.+. .+..++.+|.|++.++.+++ .| ...+.||+.+ .+.+. .-.+.
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~A 465 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA-----GAEKA 465 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc-----CCccC
Confidence 3566655 4777777776553 25689999999998887764 23 4578888765 33332 24578
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|++++..+........-...+.+.|...++.
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 8888764433322233333455667766665
No 402
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=90.18 E-value=6 Score=30.16 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=44.8
Q ss_pred EEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEEcch-
Q 029764 23 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA- 81 (188)
Q Consensus 23 ~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~- 81 (188)
+||-+|+| .|...+..+.... -++++.+|.+. ...+.+.+++.+.+-.-+++.+....
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 47778885 3333222222222 46888888633 23344555665554333455555554
Q ss_pred --HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHH
Q 029764 82 --LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 117 (188)
Q Consensus 82 --~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~ 117 (188)
.+....+ ..+||+|+...+......++.++
T Consensus 80 ~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 80 PEQDFNDTF------FEQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred hhhhchHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence 2222233 36799999765443333444433
No 403
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.02 E-value=5.6 Score=31.09 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=54.7
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--------CCC---------CcEEEEEcchHHH
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV 84 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~~~~~~~d~~~~ 84 (188)
++|.-||+|.=..++..+-... +.+|+.+|.+++.++.+++.+... .+. .++.+ ..|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 4688888874433333222212 568999999999888887654321 111 12222 2222211
Q ss_pred HHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEEE
Q 029764 85 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~ 129 (188)
...-|+|+...... ....+++.+.+.++++.+++.
T Consensus 82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 14568888765422 345677778777777765544
No 404
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=90.01 E-value=5.9 Score=30.51 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=59.6
Q ss_pred HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhh
Q 029764 16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK 90 (188)
Q Consensus 16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 90 (188)
....++.+||-.|+ +.|..+..+++.. +.++++++.+++..+.+++ .+.. .++..+ ..+.+..+.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~- 201 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT- 201 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence 34556778888884 4667777788775 5788998888776665533 3432 222222 222222221
Q ss_pred cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
....+|+++-... . .....+++.++++|.++.-
T Consensus 202 ---~~~~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 202 ---GGRGVDVVYDGVG-K---DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred ---CCCCeeEEEECCC-c---HhHHHHHHhhccCcEEEEE
Confidence 1356999884322 1 3456778899999988853
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.96 E-value=10 Score=31.51 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=57.5
Q ss_pred CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----cCC
Q 029764 22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE 95 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~ 95 (188)
++|-=||.|. .+..+|..+. .+.+|+++|.+++.++..+. +. +.+...+..+.+.+..+.+ ...
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 4677788764 3333333321 25789999999987764321 21 1222222222222111000 011
Q ss_pred CceeEEEEeCCc----------cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 96 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 96 ~~~D~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
...|+||+..+. .......+.+.+.+++|.++|...+...|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 357899887543 24455667788899998888887666544
No 406
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.91 E-value=3.3 Score=32.25 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
+|.=||+| ..+..++..+. .+.+|+++|.+++..+.+.+. +. +.....+. + . ....|+|
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV 61 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence 35556764 34333333331 256899999998876665432 21 11111111 1 1 1457888
Q ss_pred EEeCCccchHHHHHHHHhccCcCeEE
Q 029764 102 FVDADKDNYCNYHERLMKLLKVGGIA 127 (188)
Q Consensus 102 ~id~~~~~~~~~~~~~~~~L~~gG~l 127 (188)
|+..+.....+.++.+.+.++++.++
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 88776666666777777777766433
No 407
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.89 E-value=3 Score=33.44 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=63.9
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC-cee
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD 99 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~D 99 (188)
..+++|+.||.|....-+..+. ---+.++|+++.+++.-+.|+.. -.++..|..+...+-. .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence 3579999999999988877652 13577899999998888887632 3566677765543321 12 789
Q ss_pred EEEEeCCccc----------------hHHHHHHHHhccCcCeEEEEeccc
Q 029764 100 YAFVDADKDN----------------YCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 100 ~i~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
+++...+.+. ..-.+.++...++| -.+++.|+-
T Consensus 70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK 118 (328)
T ss_pred EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence 8875422111 11123444577777 777777654
No 408
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=89.81 E-value=5.6 Score=31.21 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=58.2
Q ss_pred HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
..++.+||=.|. +.|..+..+|+.. +.++++++.+++..+.+++. .+....+.....+..+.+..+. .
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----P 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----c
Confidence 345668887773 4677777788874 57899998888766655543 2332111111112222222221 2
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+|+++-... ...+...++.++++|.++.-
T Consensus 213 ~~~d~vi~~~g----~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 213 DGIDVYFDNVG----GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred CCceEEEEcch----HHHHHHHHHhcCCCceEEEE
Confidence 56898873221 23567778999999988753
No 409
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.75 E-value=6.7 Score=30.94 Aligned_cols=94 Identities=23% Similarity=0.145 Sum_probs=52.3
Q ss_pred CCEEEEEcccchHH--HHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CC----------CCcEEEEEcchHHHHHH
Q 029764 21 AKKTIEIGVFTGYS--LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GV----------DHKINFIESEALSVLDQ 87 (188)
Q Consensus 21 ~~~vLeiG~g~G~~--~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~----------~~~~~~~~~d~~~~~~~ 87 (188)
-++|.=||+|.=.. +..++. .+.+|+.+|.+++.++.+++.+... +. ..++.+ ..|..+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~--- 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR---KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA--- 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---
Confidence 35688888874332 223333 2568999999999888877643221 11 011221 1222111
Q ss_pred HhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEE
Q 029764 88 LLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 88 ~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv 128 (188)
....|+|+...... ....++..+.+.++++.+++
T Consensus 77 -------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 77 -------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred -------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 14679998875433 24567777777666655443
No 410
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.75 E-value=6.7 Score=31.41 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH---HHHHHHhhcccC
Q 029764 20 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSEN 94 (188)
Q Consensus 20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~ 94 (188)
++.+||-.|+| .|..++.+|+.. +. ++++++.+++....++ +.+...-+.....+.. ..+.+.. .
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----G 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----C
Confidence 56678777754 334556677765 45 8999988777655543 3353221111111111 1122221 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
...+|++|-.... ...+...++.++++|.++.-.
T Consensus 247 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 247 GRGADVVIEASGH---PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEEc
Confidence 3579988753222 235677789999999988643
No 411
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.72 E-value=1.9 Score=37.18 Aligned_cols=92 Identities=8% Similarity=-0.027 Sum_probs=56.9
Q ss_pred EEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029764 23 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD 99 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D 99 (188)
+++=+|+ |..+..+++.+.. +..++.+|.|++..+.+++. ....+.+|+.+. +.+. .-++.|
T Consensus 419 hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a~ 483 (558)
T PRK10669 419 HALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCAR 483 (558)
T ss_pred CEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----CccccC
Confidence 5666555 7777777777642 46899999999987777642 256788988653 3322 235789
Q ss_pred EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+++..+.+.....+-.+.+...+...++.
T Consensus 484 ~viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 484 WLLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 887753322222223333455566666665
No 412
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=89.70 E-value=8 Score=30.69 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=56.5
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
.++.+|+-.|+| .|..++.+|+.. +.+ ++.++.+++....+++ .+...-+.....+..+.+.++. ...
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence 455666666654 455666677765 454 8888777665554443 3432112222223333333332 235
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.+|+++-.... ...+..+++.|+++|.++.-.
T Consensus 230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEEc
Confidence 68998864222 245677889999999887643
No 413
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=89.54 E-value=8.5 Score=31.78 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCC-chhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.|...++-..++.......++-.++|+......+...++++.+|+..+.. ........+.+...|. .+.++..+..+
T Consensus 69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 146 (403)
T PRK07810 69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS 146 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 45667777778888888888988888877655554445556777776532 2333444444555553 34554433223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW 134 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~ 134 (188)
.+.... .....+|++... +......++.+.++.+..| .+++|++..
T Consensus 147 ~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 147 QWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 333321 234678887632 2221223455555555545 566676654
No 414
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=89.51 E-value=1.4 Score=27.27 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=21.5
Q ss_pred HcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCc
Q 029764 18 LVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNR 55 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~ 55 (188)
...|++||-||+-+|+ .+..++..+..+...++|-.+.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 3556899999999998 4444555554467777776543
No 415
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=89.45 E-value=6.2 Score=28.30 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 5 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 5 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
+.++.+.|...+.. .+..+|+=|||=+-+..+.- ...+..+++..|.|... +..+- +...+.-....
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~-~~F~fyD~~~p 76 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGG-DEFVFYDYNEP 76 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCC-cceEECCCCCh
Confidence 34555666555444 44568999998555544433 22236789999998764 22221 11334444443
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCcc--c-hHHHHHHHHhccCcCeEEEEe
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~~~--~-~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..++... .++||+|++|.+.- . .......+.-++++++.+++.
T Consensus 77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 3344322 47999999997641 1 223334444566887888765
No 416
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.45 E-value=7.9 Score=30.66 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=57.9
Q ss_pred HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+||-.|+|. |..+..+|+.. +.+ ++.++.+++..+.++ ..+...-+...... .+.+.... .
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~ 224 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----E 224 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----C
Confidence 344666888888754 66777778765 444 888888776655443 23432111111112 22222221 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
...+|+++-.... ...+..+++.|+++|.++.-.
T Consensus 225 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 225 GRGADLVIEAAGS---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 2459998853211 345677889999999887643
No 417
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.42 E-value=6.9 Score=32.00 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=44.8
Q ss_pred cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCC-------------------chhHHHHHHHHHhcCCCCcEEEEE
Q 029764 19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIE 78 (188)
Q Consensus 19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~ 78 (188)
....+|+-+|||. |...+..+.... -++++.+|.+ ....+.+.+.+.+.+-.-+++.+.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 3567899999973 443333322222 4689999987 345566666666554222344443
Q ss_pred cchHH-HHHHHhhcccCCCceeEEEEeCCc
Q 029764 79 SEALS-VLDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 79 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
..... .+..+ ...+|+|+...+.
T Consensus 212 ~~~~~~~~~~~------~~~~D~Vv~~~d~ 235 (376)
T PRK08762 212 ERVTSDNVEAL------LQDVDVVVDGADN 235 (376)
T ss_pred ccCChHHHHHH------HhCCCEEEECCCC
Confidence 33221 22233 2579988865433
No 418
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.31 E-value=5.3 Score=33.23 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=56.6
Q ss_pred EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029764 23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD 99 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D 99 (188)
+|+-+|+ |..+..++..+. .+..++.+|.+++.++.+++. . .+.++.+|+.+. +... ....+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~~l~~~-----~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPDVLREA-----GAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence 5677666 788888887664 256899999999887766542 1 367778887542 2222 135789
Q ss_pred EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
.+++..........+....+.+.+.-.+++
T Consensus 68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 68 LLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 888865433333334444455534433443
No 419
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.26 E-value=4.6 Score=30.86 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=56.9
Q ss_pred HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.++|-.|+|. |..++.+|+.. +.+ +++++.+++..+.+++. +..+.+ +.... .. . .
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~~-~~---~-----~ 156 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEAL----GPADPV--AADTA-DE---I-----G 156 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHc----CCCccc--cccch-hh---h-----c
Confidence 455667888888764 66777778775 345 99999888877655542 311111 11100 01 0 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
...+|+++-.... ...+...++.|+++|.++.
T Consensus 157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 3579988854322 2356777888999998875
No 420
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.14 E-value=2.6 Score=34.71 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=52.9
Q ss_pred EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc---CCC-----CcEEEEEc-chHHHHHHHhhcccC
Q 029764 24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVD-----HKINFIES-EALSVLDQLLKYSEN 94 (188)
Q Consensus 24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~-----~~~~~~~~-d~~~~~~~~~~~~~~ 94 (188)
|--||+ |+.+..+|..+..+.+|+++|.+++.++.+++..... ++. .+..+... +..+.
T Consensus 3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------- 70 (388)
T PRK15057 3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------- 70 (388)
T ss_pred EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----------
Confidence 445666 5544444443333568999999999988776521100 000 01122111 11111
Q ss_pred CCceeEEEEeCCc-----------cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764 95 EGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 136 (188)
Q Consensus 95 ~~~~D~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 136 (188)
....|+|++.-+. .......+.+.+ +++|..+|...+..+|
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 1456888876421 122344556666 6888888777666544
No 421
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.01 E-value=9.6 Score=30.23 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=54.8
Q ss_pred cCCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 19 VNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
.++.+||-.|+|. |..++.+|+.. +. ++++++.+++....+++ .+....+.....+.. .+.++. ..+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~ 230 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGT 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCC
Confidence 4556777666543 55666777765 44 68888766665554443 343211111122222 222222 135
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+|+++-.... ......+++.|+++|.++.-
T Consensus 231 ~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 231 GVDVVLEMSGN---PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence 78998854322 23466778899999998864
No 422
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.99 E-value=3.8 Score=32.82 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=61.1
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
..+++++--+|.| -|..++.+|+++ +.+|++||.+...-+ +.++.+|-...+.+. .|. +..... ..
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kke---ea~~~LGAd~fv~~~-~d~-d~~~~~------~~ 245 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKE---EAIKSLGADVFVDST-EDP-DIMKAI------MK 245 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHH---HHHHhcCcceeEEec-CCH-HHHHHH------HH
Confidence 4466776666643 789999999998 689999999875433 344555644322222 222 333333 23
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
..|.++-... ......++.+..+||++|.+|+-...
T Consensus 246 ~~dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 246 TTDGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred hhcCcceeee-eccccchHHHHHHhhcCCEEEEEeCc
Confidence 4454432211 00223467788999999999986544
No 423
>PLN02256 arogenate dehydrogenase
Probab=88.82 E-value=8.5 Score=30.54 Aligned_cols=94 Identities=16% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHcCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764 12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 90 (188)
Q Consensus 12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (188)
|+.-++..+..+|.=||+| ..+..++..+. .+.+|+++|.++. .+. ....+. .. ..+..+.+
T Consensus 27 ~~~~~~~~~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~~-~~~----a~~~gv----~~-~~~~~e~~----- 89 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSDY-SDI----AAELGV----SF-FRDPDDFC----- 89 (304)
T ss_pred HhHhhccCCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECccH-HHH----HHHcCC----ee-eCCHHHHh-----
Confidence 3444455566688889874 44444444432 1458999998863 122 222332 22 22322221
Q ss_pred cccCCCceeEEEEeCCccchHHHHHHH-HhccCcCeE
Q 029764 91 YSENEGSFDYAFVDADKDNYCNYHERL-MKLLKVGGI 126 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~~~~~~~~~~~~-~~~L~~gG~ 126 (188)
....|+|++........+.++.+ ...++++.+
T Consensus 90 ----~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 90 ----EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred ----hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCE
Confidence 13468888876666666667766 455666653
No 424
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=88.82 E-value=6.7 Score=31.52 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=57.8
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY 91 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~ 91 (188)
...++.+||-.|+| .|..++.+|+.. +. +|+.++.+++..+.+++ .+.. .++.. +....+..+.
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~--G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~-- 247 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIA--GASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLT-- 247 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHc--
Confidence 34566788887764 466677778765 44 48888888776655532 3431 22222 2222233331
Q ss_pred ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
....+|+++-.... ...+..+++.|+++|.++.-
T Consensus 248 --~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 248 --DGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred --CCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence 13569977643221 24567788999999988764
No 425
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=88.79 E-value=3.8 Score=32.14 Aligned_cols=89 Identities=21% Similarity=0.105 Sum_probs=49.1
Q ss_pred CEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+|+=+|. |..+-++++.+.. ...+++.|.+....+.+.+ .+..+ -..+.... .. ....
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d----~~~~~~~~--~~------~~~a 65 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID----ELTVAGLA--EA------AAEA 65 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc----ccccchhh--hh------cccC
Confidence 45677775 4555555544432 3446777776665554432 12211 11111001 10 2567
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
|+|++.-+.....++++++.+.|++|..++
T Consensus 66 D~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 66 DLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred CEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 888888777777778888877777776554
No 426
>PRK05967 cystathionine beta-lyase; Provisional
Probab=88.73 E-value=12 Score=30.84 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchh-HHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.|....+-..++........+-+.+|.+.....+...+.++.+|+..+..-.. ...+++.++..|. .+.++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 45555555555565556566777787766665555556667888887654332 2334455566664 35555433223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL 133 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 133 (188)
.+.+.. .....+|++..+ +.-....++.+.++.+..| .+++|+++
T Consensus 141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 333332 244678988843 2334456677777777666 45555554
No 427
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=88.73 E-value=7.1 Score=30.50 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=56.3
Q ss_pred HcCCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
..++.+++-.|.+ .|..+..++... +.+++.++.+++....+++ .+....+.....+..+.+.... ..
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence 4566788888864 556666666654 5788888888776555432 2321111111112222222221 12
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+|+++-.... ..++.+++.++++|.++.-
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 468988754322 3456777889999988764
No 428
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.65 E-value=9.2 Score=29.28 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=44.7
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
..+..+|+-+|+| .|...+..+.... -++++.+|.+. ...+.+++.+.+.+-.-+++.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 3456799999997 3443333222222 46888887532 2334455666655433344444
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCc
Q 029764 78 ESEALS-VLDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 78 ~~d~~~-~~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
.....+ ....+ ...||+|+...+.
T Consensus 108 ~~~i~~~~~~~~------~~~~DiVi~~~D~ 132 (245)
T PRK05690 108 NARLDDDELAAL------IAGHDLVLDCTDN 132 (245)
T ss_pred eccCCHHHHHHH------HhcCCEEEecCCC
Confidence 443322 22333 3679998876543
No 429
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.62 E-value=11 Score=30.36 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=55.3
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
.++.+++-.|+| .|..++.+|+.. +.+++.++.+++....+.+ ..|... .+...+. +.+... ...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~------~~~ 244 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA------ADS 244 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh------cCC
Confidence 356778877654 455666677765 5678888877765443332 345321 1111221 222222 235
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 132 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 132 (188)
+|++|-.... ...++.+.+.++++|.++.-..
T Consensus 245 ~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 245 LDYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CcEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence 8888743221 2356777889999999887543
No 430
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.53 E-value=8.2 Score=28.51 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=44.5
Q ss_pred HcCCCEEEEEcccchHHHHHHHhhC--CCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEE
Q 029764 18 LVNAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINF 76 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~ 76 (188)
.....+|+-+|||. .+..+++.+ ..-++++.+|.+. ...+.+++++++.+-.-+++.
T Consensus 18 ~L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 18 RLRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred HHHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 33456899999864 333333322 2146888888642 223455566666553334554
Q ss_pred EEcchHHHHHHHhhcccCCCceeEEEEeCCc
Q 029764 77 IESEALSVLDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 77 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
+.....+..+.+ ..+||+|+.....
T Consensus 96 ~~~~~~~~~~~~------~~~~dvVi~~~~~ 120 (197)
T cd01492 96 DTDDISEKPEEF------FSQFDVVVATELS 120 (197)
T ss_pred EecCccccHHHH------HhCCCEEEECCCC
Confidence 444333322333 3679999876543
No 431
>PRK08324 short chain dehydrogenase; Validated
Probab=88.40 E-value=11 Score=33.51 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=45.6
Q ss_pred CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE 95 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~ 95 (188)
.++.+|-+|++ |..+..+++.+ ..+.+|+.++.+++..+.+.+.+... .++.++..|..+. +....+.. ...
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 34678888753 34444444433 13678999999987766655544322 3567777665321 11111100 013
Q ss_pred CceeEEEEeC
Q 029764 96 GSFDYAFVDA 105 (188)
Q Consensus 96 ~~~D~i~id~ 105 (188)
+.+|+|+...
T Consensus 497 g~iDvvI~~A 506 (681)
T PRK08324 497 GGVDIVVSNA 506 (681)
T ss_pred CCCCEEEECC
Confidence 5789998764
No 432
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=88.39 E-value=11 Score=29.89 Aligned_cols=101 Identities=23% Similarity=0.253 Sum_probs=60.8
Q ss_pred HHcCCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+||-.|++ .|..++.+|+.. +.+++.+..+++..+.++ ..+...-+.....+..+.+..+. .
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~ 231 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----G 231 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----c
Confidence 34566788888775 667777788875 568999988877655443 23422111111113323333332 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+++-+... ...+..+++.++++|.++.-
T Consensus 232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence 3579999854322 23466778889999999864
No 433
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.28 E-value=2.6 Score=33.37 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=26.7
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
..+|+||+........+.++.+.+++++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 6799999986555566788888888999987664
No 434
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=88.26 E-value=6.6 Score=27.16 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=28.1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
...||+||+........+.++.+.+.+.++..+++
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 37899999987666778889999999999976665
No 435
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.17 E-value=7 Score=28.36 Aligned_cols=91 Identities=8% Similarity=0.098 Sum_probs=47.1
Q ss_pred HHHHHHcCC-CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHH--HHHH
Q 029764 13 AMLLRLVNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS--VLDQ 87 (188)
Q Consensus 13 ~~l~~~~~~-~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~--~~~~ 87 (188)
..++...++ ..|+.+|||.=.....+....+ +.+++-+|. |+.+..-++.+...+.. .+.+++..|..+ ....
T Consensus 70 ~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~ 147 (183)
T PF04072_consen 70 REFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDA 147 (183)
T ss_dssp HHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHH
T ss_pred HHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHH
Confidence 333433343 4999999977776666665433 567777777 66666666666654321 234567777653 4444
Q ss_pred HhhcccCCCceeEEEEeC
Q 029764 88 LLKYSENEGSFDYAFVDA 105 (188)
Q Consensus 88 ~~~~~~~~~~~D~i~id~ 105 (188)
+.+.+.+....-+++..+
T Consensus 148 L~~~g~~~~~ptl~i~Eg 165 (183)
T PF04072_consen 148 LPKAGFDPDRPTLFIAEG 165 (183)
T ss_dssp HHHCTT-TTSEEEEEEES
T ss_pred HHHhCCCCCCCeEEEEcc
Confidence 543322233444555554
No 436
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=88.16 E-value=2.5 Score=32.10 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=40.8
Q ss_pred ccchHHHHH--HHhhCC-CCCEEEEEeCCchhHHHHHHH-HHhc-CCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029764 29 VFTGYSLLL--TALTIP-EDGQITAIDVNRETYEIGLPI-IKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 103 (188)
Q Consensus 29 ~g~G~~~~~--la~~~~-~~~~v~~iD~~~~~~~~a~~~-~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~i 103 (188)
.|.|-.+.. +|..+. .+.+|..||.||..--..... .... .+++++.+...+-...+....+. .+...||+|++
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~Vlv 89 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLV 89 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEE
Confidence 355654444 444442 378999999988754433322 2222 34556776665544333332211 01246999999
Q ss_pred e
Q 029764 104 D 104 (188)
Q Consensus 104 d 104 (188)
|
T Consensus 90 D 90 (231)
T PF07015_consen 90 D 90 (231)
T ss_pred e
Confidence 9
No 437
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.99 E-value=3.5 Score=32.27 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.8
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
..+|+||+..........++.+.+.+.++..+++
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 6799999987666677888888888888876654
No 438
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=87.94 E-value=11 Score=29.55 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=58.2
Q ss_pred HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhcccC
Q 029764 18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN 94 (188)
Q Consensus 18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~ 94 (188)
..++.+|+-.|+ +.|..++.+|+.. +.+++.+..+++..+.+++ .+...-+.....+ ....+.... .
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~ 207 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----G 207 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----C
Confidence 445668888774 5777888888875 5666677777776666543 3432111111112 222222221 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+++-... ...+..+++.|+++|.++.-
T Consensus 208 ~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 208 EKGVNLVLDCVG----GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CCCceEEEECCc----hHHHHHHHHHhccCCeEEEE
Confidence 356899984321 24667788899999988864
No 439
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=87.92 E-value=0.81 Score=29.50 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCC-----CCCCCcccchHHHHHHHHHHhhcCCC
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE-----QVPDHFRGSSRQAILDLNRSLADDPR 169 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (188)
+..+|++++|.......+.+..+...++-||++++--..+......+.. .......- .....+.|.+.+.++++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~-~~~F~~rf~~~L~~~~~ 87 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDV-TPRFIRRFIRSLQSDPG 87 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B---HHHHHHHHHHHCCSTT
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcc-cHHHHHHHHHHHHHCcC
Confidence 5689999999987777889999999999999988854333221111100 00000011 33456777777777776
Q ss_pred eE
Q 029764 170 VQ 171 (188)
Q Consensus 170 ~~ 171 (188)
+.
T Consensus 88 i~ 89 (92)
T PF08351_consen 88 II 89 (92)
T ss_dssp S-
T ss_pred Cc
Confidence 43
No 440
>PRK07671 cystathionine beta-lyase; Provisional
Probab=87.89 E-value=13 Score=30.46 Aligned_cols=122 Identities=12% Similarity=0.191 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCch-hHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.|...++-..++........+-+++|++.....++ .+.++.+|++.+..-. .+....+.+...|. .+.++..+-.+
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 125 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE 125 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 46677777777776666666668887765544333 3445778887765322 33333444444453 24444332223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcC-eEEEEecccc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG-GIAVYDNTLW 134 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~ 134 (188)
.+.+.. .....+|++..+ +......++.+.++.+.. ..+++|++..
T Consensus 126 ~l~~ai-----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 126 EVEEAI-----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 233321 234578887632 211123345555555554 4666676653
No 441
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=87.87 E-value=0.53 Score=31.26 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=25.3
Q ss_pred CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR 55 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~ 55 (188)
+....+|||||.|...--|.+. +-.-.++|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4557999999999987777664 55678888754
No 442
>PRK10083 putative oxidoreductase; Provisional
Probab=87.86 E-value=10 Score=30.02 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=53.3
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+|+-.|+| .|..++.+|+.. . ...+++++.+++..+.+++ .|...-+.....+..+.+.. .
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~---~--- 225 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEE---K--- 225 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhc---C---
Confidence 34566788888853 233444555542 2 3368888988877766654 34321111111122222211 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|++|-.... ...+...++.|+++|.++.-
T Consensus 226 g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 226 GIKPTLIIDAACH---PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 1234555532221 23567778999999998874
No 443
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=87.73 E-value=11 Score=29.27 Aligned_cols=100 Identities=12% Similarity=0.096 Sum_probs=58.9
Q ss_pred HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+|+=.| .+.|..+..+|+.. +.++++++.+++..+.+++ .+...-+.....+..+.+.... .
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~ 208 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPDQVREAL----G 208 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHc----C
Confidence 445667888877 45667777788875 5789999888877665533 3432111111112222222221 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+++-.... .....+++.|+++|.++.-
T Consensus 209 ~~~~d~vl~~~g~----~~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 209 GGGVTVVLDGVGG----AIGRAALALLAPGGRFLTY 240 (324)
T ss_pred CCCceEEEECCCh----HhHHHHHHHhccCcEEEEE
Confidence 3469999843221 2346778899999988853
No 444
>PTZ00357 methyltransferase; Provisional
Probab=87.51 E-value=3.1 Score=36.84 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=62.5
Q ss_pred EEEEEcccchHHHHHHH---hhCCCCCEEEEEeCCchhHHHHHHHHH---hcCC-----CCcEEEEEcchHHHHHHHh-h
Q 029764 23 KTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIK---KAGV-----DHKINFIESEALSVLDQLL-K 90 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la---~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~~~-----~~~~~~~~~d~~~~~~~~~-~ 90 (188)
.|+-+|+|-|-..-... +......+|++||-+|..+...+.+.. .+.- .++++++..|....-.... .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999996544433 333334689999999876545444432 2211 2469999999876522100 0
Q ss_pred c---ccCCCceeEEEEe-----CCccchHHHHHHHHhccCc----CeE
Q 029764 91 Y---SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI 126 (188)
Q Consensus 91 ~---~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~----gG~ 126 (188)
+ ....+++|+|+.. ++-+--.+.++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0 0012479999754 2333445677777777776 665
No 445
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=87.48 E-value=5.8 Score=33.79 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHhcCC
Q 029764 4 TAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGV 70 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~ 70 (188)
|+++..+++..+.... +...+.|..||+|........... ....+++-|..+.+...++.+..-.+.
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 4556667776665533 446899999999997765544332 125699999999999999988654443
No 446
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=87.46 E-value=9.3 Score=30.30 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=56.1
Q ss_pred CCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 20 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 20 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
++.+|+-.|+|. |..+..+|+... ..++++++.+++..+.+++ .|...-+.....+..+.+..+. ....+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~ 233 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGF 233 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCC
Confidence 556777667653 566777887753 2368888777765554443 3432111111122223333331 13568
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
|+||-.... ...+..+.+.|+++|.++.-.
T Consensus 234 d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 234 DVGLEMSGA---PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence 988753221 345677788999999988754
No 447
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.43 E-value=7.9 Score=30.19 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=52.2
Q ss_pred EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCC---CcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
+|.=+|+|.- +..+|..+. .+.+|+.++.+++.++..++. ++. ..... .......... ...+
T Consensus 2 ~I~IiG~G~~--G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~~~~~-------~~~~ 67 (304)
T PRK06522 2 KIAILGAGAI--GGLFGAALAQAGHDVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAADDPAE-------LGPQ 67 (304)
T ss_pred EEEEECCCHH--HHHHHHHHHhCCCeEEEEECChHHHHHHHHc----CCcccCCceee-cccCCCChhH-------cCCC
Confidence 4777888543 333333221 146899999877665544432 321 11110 0000010111 2679
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|+|++..........++.+.+.+.++..+++
T Consensus 68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 68 DLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 9999987666677888888888888776654
No 448
>PRK07582 cystathionine gamma-lyase; Validated
Probab=87.41 E-value=11 Score=30.61 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.|...++-+.++... +..++-+++|+......+...+.++.+|++.+..- .....++..+...|. .+.++..+..
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~- 125 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGM- 125 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCCh-
Confidence 456677777777776 56677788887665555544455577888877544 333444444555553 2344332211
Q ss_pred HHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCc-CeEEEEeccc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV-GGIAVYDNTL 133 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~-gG~lv~~~~~ 133 (188)
.... ....++|++.... ......++.+.++.+. |..+++|++.
T Consensus 126 -~~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 126 -AEAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred -HHHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 1111 2456888876421 1112234555555554 5567777765
No 449
>PRK08064 cystathionine beta-lyase; Provisional
Probab=87.28 E-value=15 Score=30.14 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=63.1
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCch-hHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
..|...++-+.++........+-+++|+......+. .+.++.+|+..+..-. .+....+.+...|. .+.++..+..
T Consensus 52 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~ 128 (390)
T PRK08064 52 GNPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNL 128 (390)
T ss_pred CChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCH
Confidence 356677777777776655555666776655444442 4555678887765322 33444444455553 3444433222
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCc-CeEEEEecccc
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV-GGIAVYDNTLW 134 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 134 (188)
+.+.... .....+|++.... ......++.+.++.+. |..+++|+...
T Consensus 129 ~~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 129 EEVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred HHHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence 3232221 2345788877422 1122233444444444 44666676643
No 450
>PRK05939 hypothetical protein; Provisional
Probab=87.22 E-value=15 Score=30.21 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
..|.+..+=+.++........+-+.+|.+.....+...+.++.+|+..+..-......-+.+...|. .+.++..+-.+
T Consensus 45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~--~v~~v~~~d~e 122 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV--EVTMVDATDVQ 122 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCC--EEEEECCCCHH
Confidence 3466667777777887777788888876655555444455577888876532211111223444553 24444332223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL 133 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 133 (188)
.+.... ...-.+|++... +......++.+.++.+..| .+++|++.
T Consensus 123 ~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 123 NVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 233322 234568887642 2222345666666666655 45555544
No 451
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=87.20 E-value=12 Score=30.65 Aligned_cols=123 Identities=17% Similarity=0.102 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
.|.+.++=+.++.......++-.++|+......+...+.++.+|+..+..-......-+.+...+. .+.+...|..++
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l 129 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDI 129 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHH
Confidence 345566666677776667777777766655544444455567777765543322222222333342 233433343233
Q ss_pred HHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCcC-eEEEEecccc
Q 029764 85 LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG-GIAVYDNTLW 134 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~g-G~lv~~~~~~ 134 (188)
...+ ......+|++.... ......++.+.++.+.. ..+++|++..
T Consensus 130 ~~~i-----~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a 177 (385)
T PRK08574 130 IEAI-----KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFA 177 (385)
T ss_pred HHhc-----CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence 2222 11256888886422 11111245555555554 4666677653
No 452
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=87.18 E-value=14 Score=30.82 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.|....+-..++........+-.++|+......+...+.++.+|+..+..- ......+..+...|. ++.++..+..+
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e 140 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE 140 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence 566667777777777777788888877766655544455567777766421 223334444455553 34444333223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW 134 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~ 134 (188)
.+.+.. .....+|++... +......++.+.++.+..| .+|+|++..
T Consensus 141 ~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 141 NFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 333322 235678888632 2111222345555555545 566666643
No 453
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.11 E-value=10 Score=29.23 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=47.6
Q ss_pred CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD 99 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D 99 (188)
+.+|-.|+ |..+..+++.+..+.+|+.++.+++.++...+.+...+ .++.++..|..+. +..+.+.....+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666664 46777777777657899999988776665555554433 2466677665331 222211101136789
Q ss_pred EEEEeC
Q 029764 100 YAFVDA 105 (188)
Q Consensus 100 ~i~id~ 105 (188)
.++..+
T Consensus 79 ~li~nA 84 (275)
T PRK06940 79 GLVHTA 84 (275)
T ss_pred EEEECC
Confidence 988764
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.10 E-value=12 Score=29.49 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=49.9
Q ss_pred CCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 20 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 20 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
.+++++-+|.|. |...+..++.+ +.+|+.+|.+++....+ ...+. ++.. . +.+.+. ...+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~----~~~G~----~~~~--~-~~l~~~------l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARI----TEMGL----SPFH--L-SELAEE------VGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH----HHcCC----eeec--H-HHHHHH------hCCC
Confidence 568999999863 33333444443 57999999987654433 23342 2221 1 122222 2679
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
|+||...+. .-.-+...+.+++|++++
T Consensus 212 DiVI~t~p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 212 DIIFNTIPA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence 999985432 123355667888877655
No 455
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.05 E-value=3.3 Score=36.26 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=56.0
Q ss_pred CEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764 22 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 98 (188)
Q Consensus 22 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~ 98 (188)
.+|+=+|+ |..+..+++.+.. +..++.+|.|++.++.+++. | ...+.||+.+ .+.+. .-++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A 465 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA-----GAAKA 465 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc-----CCCcC
Confidence 46888666 6666666665432 46899999999988877652 3 4578888765 33332 23578
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|++++..+........-...+.+.|+-.++.
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 8888764333222222233344556555554
No 456
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=87.03 E-value=13 Score=29.56 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=57.5
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~ 95 (188)
..++.+|+-.|+| .|..+..+|+.. +.++++++.+++..+.+++ .+...-+.... .+....+..+. .
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~-----~ 231 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT-----G 231 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----C
Confidence 4456688887753 445556677764 6789999888887666643 34321111111 22222222221 2
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+.+|+++-.... ...+...++.|+++|.++.-
T Consensus 232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Confidence 379988843221 33566778999999988753
No 457
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.99 E-value=2.4 Score=34.81 Aligned_cols=51 Identities=18% Similarity=0.093 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH
Q 029764 11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 64 (188)
Q Consensus 11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~ 64 (188)
.....+++.++.+||-|.+| |..++.++..- -.+|++||+||......+=+
T Consensus 26 vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~--P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSA-GCNALDYLLAG--PKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HHHHHhCCCCCCeEEEEccC-CchHHHHHhcC--CceEEEEeCCHHHHHHHHHH
Confidence 33455678888899999875 55555554443 36999999999887666543
No 458
>PLN02494 adenosylhomocysteinase
Probab=86.73 E-value=7.7 Score=32.80 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=53.8
Q ss_pred cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..+++|+-+|+| .|......++.+ +.+|+.+|.++.....+.. .|. .+. +..+.+ ..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal----------~~ 309 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV----------SE 309 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH----------hh
Confidence 457899999997 344555555554 5689999998865433322 132 221 222221 45
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.|+|+......+ -+.....+.+|+|++++--.
T Consensus 310 ADVVI~tTGt~~--vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 310 ADIFVTTTGNKD--IIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred CCEEEECCCCcc--chHHHHHhcCCCCCEEEEcC
Confidence 798887432221 22366778999999998653
No 459
>PRK08655 prephenate dehydrogenase; Provisional
Probab=86.72 E-value=5.5 Score=33.33 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=45.6
Q ss_pred EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764 23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 101 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 101 (188)
+|.=|| |.|..+.+++..+. .+.+|+++|.+++..... ....+. .. ..+..+. ....|+|
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~----------~~~aDvV 62 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA----------AKDADIV 62 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH----------hccCCEE
Confidence 456676 23444444444432 145899999887654221 222231 11 1222111 1456888
Q ss_pred EEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 102 FVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 102 ~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
++..+.......++.+.+.+++|.+++
T Consensus 63 Ilavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 63 IISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 877665555666677777777766444
No 460
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.68 E-value=12 Score=29.93 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred CCEEEEEcccc-h-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-------hcCCC-----CcEEEEEcchHHHHH
Q 029764 21 AKKTIEIGVFT-G-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGVD-----HKINFIESEALSVLD 86 (188)
Q Consensus 21 ~~~vLeiG~g~-G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~~-----~~~~~~~~d~~~~~~ 86 (188)
.++|--||+|+ | .++..++.+ +.+|+..|.+++..+.+++.+. +.+.. .++++. .+..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~---- 78 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIE---- 78 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHH----
Confidence 36788999973 2 344445543 7899999999988776655433 12211 122221 1211
Q ss_pred HHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEE
Q 029764 87 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 87 ~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv 128 (188)
.. -..-|+|+-... ..--..++..+.+.++++.+|.
T Consensus 79 ~a------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 79 AC------VADADFIQESAPEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred HH------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 11 246788886532 2223567788888899887443
No 461
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=86.67 E-value=12 Score=29.83 Aligned_cols=101 Identities=12% Similarity=0.095 Sum_probs=69.6
Q ss_pred cCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764 19 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 96 (188)
Q Consensus 19 ~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 96 (188)
..+.+|+--+. ..|.....+|+. . +++|+++--+++..+.+++. .|+..-+.+...|..+.+.+.. ..
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKl-k-G~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~~L~~a~-----P~ 218 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKL-K-GCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQALKEAC-----PK 218 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHh-h-CCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHHHHHHHC-----CC
Confidence 33445544333 356777888884 3 89999999999988877764 3665556777777776666542 46
Q ss_pred ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
.+|+.|=+-. -+.++.+.++|+..+.++++...
T Consensus 219 GIDvyfeNVG----g~v~DAv~~~ln~~aRi~~CG~I 251 (340)
T COG2130 219 GIDVYFENVG----GEVLDAVLPLLNLFARIPVCGAI 251 (340)
T ss_pred CeEEEEEcCC----chHHHHHHHhhccccceeeeeeh
Confidence 7888774421 24578888888999888887655
No 462
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.51 E-value=11 Score=31.48 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=75.0
Q ss_pred CCCEEEEEcc-cch--HHHHHHHhhCC---CCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEE-EcchHHHHHHHhhc
Q 029764 20 NAKKTIEIGV-FTG--YSLLLTALTIP---EDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKY 91 (188)
Q Consensus 20 ~~~~vLeiG~-g~G--~~~~~la~~~~---~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~ 91 (188)
+|..|+-+|- |+| .++.-||..+. ...-++++|. .|.+++..+....+.+.+- .... ..|..++...-.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-FGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCce-ecCCCCCCHHHHHHHHHHH
Confidence 4556787774 344 23344555443 2345788884 6777888888777766431 1111 12344433221111
Q ss_pred ccCCCceeEEEEeCC--cc---chHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029764 92 SENEGSFDYAFVDAD--KD---NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 166 (188)
Q Consensus 92 ~~~~~~~D~i~id~~--~~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (188)
.....||+|++|-. ++ ...+-+..+...++|.=.+++-|... |. . .....++|++.+
T Consensus 178 -ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~-GQ------d--------A~~~A~aF~e~l-- 239 (451)
T COG0541 178 -AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI-GQ------D--------AVNTAKAFNEAL-- 239 (451)
T ss_pred -HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc-ch------H--------HHHHHHHHhhhc--
Confidence 01367999999932 22 23344566678999998777666553 11 1 344578888876
Q ss_pred CCCeEEEEe
Q 029764 167 DPRVQLSHV 175 (188)
Q Consensus 167 ~~~~~~~~l 175 (188)
+++.+.+
T Consensus 240 --~itGvIl 246 (451)
T COG0541 240 --GITGVIL 246 (451)
T ss_pred --CCceEEE
Confidence 4444444
No 463
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=86.47 E-value=10 Score=31.21 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=64.2
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chH--HHHHHHhhcccCC
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EAL--SVLDQLLKYSENE 95 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~--~~~~~~~~~~~~~ 95 (188)
...++=-|+|++..-..+++..+++.+|..+.. -.+=+...+.++..|.. +..+.. .+. +.+.+..+. .
T Consensus 56 ~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~n-G~FG~R~~~ia~~~g~~--v~~~~~~wg~~v~p~~v~~~L~~---~ 129 (383)
T COG0075 56 GDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVN-GKFGERFAEIAERYGAE--VVVLEVEWGEAVDPEEVEEALDK---D 129 (383)
T ss_pred CcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeC-ChHHHHHHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhc---C
Confidence 356777799999988888888887889988886 33444555556666643 333332 221 222333222 4
Q ss_pred CceeEEEEeCCc--cchHHHHHHHHhccCcCeEEEEeccc
Q 029764 96 GSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 96 ~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
..++.|++-+.. ....+.++.+..+.|..|.+++-|..
T Consensus 130 ~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaV 169 (383)
T COG0075 130 PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAV 169 (383)
T ss_pred CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEec
Confidence 688888776432 22344566666666766655554443
No 464
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.39 E-value=13 Score=28.69 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=59.8
Q ss_pred HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
..++.+||-.|+ +.|..++.+|+.. +.+++++..+++..+.++ ..|.. .+-....+..+.+..+ .
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------~ 206 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------P 206 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------C
Confidence 456678888885 5777888888875 578999888877655553 23432 1211112222222222 2
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
.++|+++-... ...+..+++.|+++|.++...
T Consensus 207 ~~~d~vl~~~~----~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 207 GGFDKVLELVG----TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred CCceEEEECCC----hHHHHHHHHHhccCCEEEEEc
Confidence 57998884322 135677789999999988643
No 465
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=86.24 E-value=13 Score=29.42 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=58.3
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY 91 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~ 91 (188)
...++.+||-.|+| .|..++.+|+.. +.+ +++++.+++....+++ .+.. .++.. +..+.+....
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~-- 230 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELT-- 230 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHh--
Confidence 34566788888764 556666677764 456 8888888877665542 2321 22222 2222222221
Q ss_pred ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
....+|+++-.... ...+..+++.|+++|.++.-.
T Consensus 231 --~~~~vd~vld~~~~---~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 231 --DGRGADVVIVATGS---PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred --CCcCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEe
Confidence 13458988753221 235677788999999888743
No 466
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=86.08 E-value=14 Score=28.74 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=56.5
Q ss_pred HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhh
Q 029764 16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK 90 (188)
Q Consensus 16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 90 (188)
....++.+||-.|+ +.|..++.+|+.. +.+++.+.-+++..+.+++ .+.. .++... ..+.+..+.
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~- 204 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAA- 204 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHh-
Confidence 34556678887764 4677778888876 5677777655555444433 3432 222222 222233332
Q ss_pred cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
....+|+||-.... .....+++.|+++|.++.-
T Consensus 205 ---~~~~~d~v~d~~g~----~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 205 ---GGAPISVALDSVGG----KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred ---CCCCCcEEEECCCC----hhHHHHHHhhcCCcEEEEE
Confidence 13579998843221 2346778999999988854
No 467
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=86.06 E-value=2.8 Score=33.18 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=36.1
Q ss_pred HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh
Q 029764 16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 67 (188)
Q Consensus 16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 67 (188)
++...+.+|+-||+|.-....++++. ..+|.+||+++..+..-+-.++.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHHHH
Confidence 35667789999999866566666654 46999999999888766555444
No 468
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.76 E-value=10 Score=29.83 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=58.4
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhccc
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSE 93 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~ 93 (188)
+..++.+||-+|+| .|..++.+|+.. +.+ ++.++.+++....+++ .+.. .++..+..+... ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~---- 222 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED---- 222 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh----
Confidence 44566788888865 356667777764 445 8888888887666543 2322 222222111111 111
Q ss_pred CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
....+|+++-.... ...+..+.+.|+++|.++.-
T Consensus 223 ~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 223 NPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred cCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEEE
Confidence 13579999853221 34667778999999988764
No 469
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.74 E-value=4.8 Score=29.21 Aligned_cols=94 Identities=19% Similarity=0.124 Sum_probs=53.2
Q ss_pred EEEEEcccchH--HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-------C-CC--------CcEEEEEcchHHH
Q 029764 23 KTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------G-VD--------HKINFIESEALSV 84 (188)
Q Consensus 23 ~vLeiG~g~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~ 84 (188)
+|.-+|+|+=. ++..++.. +.+|+.+|.+++.++.+++.+... + ++ .++.+ ..|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH-
Confidence 35667886433 33344443 789999999999998887776541 1 11 12221 222211
Q ss_pred HHHHhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEec
Q 029764 85 LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
....|+|+=.. ..+...+++.++.+.++++..+..+.
T Consensus 76 ----------~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 76 ----------AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ----------GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ----------HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 13678777432 22334678899988998888877654
No 470
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.65 E-value=0.71 Score=35.97 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.2
Q ss_pred cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhH
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 58 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~ 58 (188)
..+++|||+|||+|--.+...... ...+...|.+.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 467899999999999888877653 26788888877766
No 471
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=85.36 E-value=16 Score=28.63 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=57.2
Q ss_pred HcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764 18 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 95 (188)
Q Consensus 18 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 95 (188)
..++.+++-.| ...|..++.+|+.. +.++++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 138 ~~~g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~ 207 (327)
T PRK10754 138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVERVKEIT----GG 207 (327)
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHHHHHHHc----CC
Confidence 44566777665 34667777788875 5789999888776655532 3432111111112222223322 13
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
..+|+++ +... ...+...++.++++|.++.-
T Consensus 208 ~~~d~vl-~~~~---~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 208 KKVRVVY-DSVG---KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred CCeEEEE-ECCc---HHHHHHHHHHhccCCEEEEE
Confidence 5689777 4322 13456678899999988853
No 472
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=85.29 E-value=14 Score=28.99 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=56.1
Q ss_pred CCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764 21 AKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 98 (188)
Q Consensus 21 ~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 98 (188)
+.+||-.|+ +.|..++.+|+... +.+++++..+++..+.+++ .+...-+.. ..+....+... ....+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~~~i~~~-----~~~~v 217 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLKAQLEKL-----GLEAV 217 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHHHHHHHh-----cCCCC
Confidence 668888874 56677777888642 5689998887766555533 343211111 12222222222 13569
Q ss_pred eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
|+++ +... ....+...++.|+++|.++.
T Consensus 218 d~vl-~~~~--~~~~~~~~~~~l~~~G~~v~ 245 (336)
T TIGR02817 218 SYVF-SLTH--TDQHFKEIVELLAPQGRFAL 245 (336)
T ss_pred CEEE-EcCC--cHHHHHHHHHHhccCCEEEE
Confidence 9888 3211 12346777888999998875
No 473
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.23 E-value=16 Score=28.60 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 94 (188)
...++.+|+-.|+| .|..+..+++.. +.+++.++.+++..+.+++ .+....+.... .+....+.... .
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~ 226 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----G 226 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----C
Confidence 34455666655553 445556666664 5789999988877666654 23221111111 22223333332 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+++-... ...+..+++.|+++|.++..
T Consensus 227 ~~~~d~~i~~~~----~~~~~~~~~~l~~~G~~v~~ 258 (336)
T cd08276 227 GRGVDHVVEVGG----PGTLAQSIKAVAPGGVISLI 258 (336)
T ss_pred CCCCcEEEECCC----hHHHHHHHHhhcCCCEEEEE
Confidence 357898884321 23466778999999998863
No 474
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.22 E-value=9.4 Score=27.46 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=52.8
Q ss_pred CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+++.+-+|+..-..-..... .. ..+|.+||.++--+. .+ + .+++. .-...++...+... .++||+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-~G-A~~iltveyn~L~i~--~~-~-----~dr~s--si~p~df~~~~~~y---~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-HG-AAKILTVEYNKLEIQ--EE-F-----RDRLS--SILPVDFAKNWQKY---AGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHH-cC-CceEEEEeecccccC--cc-c-----ccccc--cccHHHHHHHHHHh---hccchh
Confidence 46788888875543333222 22 568999998752211 00 0 11221 11122333333322 578888
Q ss_pred EEEe-----------CCcc---chHHHHHHHHhccCcCeEEEEecccc
Q 029764 101 AFVD-----------ADKD---NYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 101 i~id-----------~~~~---~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+.+- +++- .....+..+.++||+||.+++.-+..
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 7432 1222 22445566778999999999865443
No 475
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=85.21 E-value=18 Score=29.59 Aligned_cols=123 Identities=13% Similarity=0.107 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCC-chhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEAL 82 (188)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 82 (188)
..|....+=..++........+-+++|+......++ .+.++.+|+..+.. +.........+...|.. +.++..+..
T Consensus 48 ~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~--v~~vd~~d~ 124 (380)
T PRK06176 48 GNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS--CTIIDTSDL 124 (380)
T ss_pred CChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCeE--EEEcCCCCH
Confidence 356667777777776666677777887775554443 44557788886642 22333334444444432 333322222
Q ss_pred HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW 134 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~ 134 (188)
+.+.+.. .....+|++... +......++.+.++.+..| .+++|++..
T Consensus 125 e~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 125 SQIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 3233321 235678887532 2111223455555556555 555666543
No 476
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=85.16 E-value=17 Score=28.86 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcccCC
Q 029764 20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE 95 (188)
Q Consensus 20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~ 95 (188)
++.+||-.|+| .|..+..+|+... ..++++++.+++..+.+++ .|.. .++.. +..+.+.... .
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~ 241 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G 241 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence 55678877764 3455666777653 2378889888777666643 3432 22222 2222222221 2
Q ss_pred CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
+.+|+++-.... ...++..++.|+++|.++.-
T Consensus 242 ~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 242 GGVDAVIDFVNN---SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence 368988842221 23577788999999998864
No 477
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.10 E-value=3.8 Score=33.65 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=45.4
Q ss_pred CcEEEEEcchHHHHHHHhhcccCCCceeEEEE-eC----CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764 72 HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW 134 (188)
Q Consensus 72 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~i-d~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 134 (188)
+++++++++..+.+.+. ..+++|.+++ |. +.....+.++.+.+.++|||.+++-+...
T Consensus 275 drv~i~t~si~~~L~~~-----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRL-----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhC-----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 78999999999988765 2578997754 43 34556778888899999999999876654
No 478
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.09 E-value=17 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=24.3
Q ss_pred CEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHH
Q 029764 22 KKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYE 59 (188)
Q Consensus 22 ~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~ 59 (188)
.+|.-||+|. |......+....-. +++.+|++++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH
Confidence 4688899977 66544433332212 8999999888653
No 479
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=85.08 E-value=14 Score=28.90 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
+..++.+||--. .|.|.....+++.. +.++++.--+.+..+.|+++ |....+.....|..+.+..+- .
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiT----n 212 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKIT----N 212 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhcc----C
Confidence 356677766543 45566777777764 56788877777777777765 544445555566655544442 2
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
....|+++=.-.. +.++.-+..||++|.+|.
T Consensus 213 gKGVd~vyDsvG~----dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 213 GKGVDAVYDSVGK----DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred CCCceeeeccccc----hhhHHHHHHhccCceEEE
Confidence 4578888743222 345666789999999886
No 480
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.00 E-value=8.8 Score=29.88 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=51.3
Q ss_pred EEEEEcccchHHHHHHHhhCC-----CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 23 KTIEIGVFTGYSLLLTALTIP-----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~-----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
+|.=||| |..+..++..+- ...++++.|.+++.++.+.+. .+ ++. ..+..+.. ..
T Consensus 4 ~IgfIG~--G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---~g----~~~-~~~~~e~~----------~~ 63 (272)
T PRK12491 4 QIGFIGC--GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---YG----ITI-TTNNNEVA----------NS 63 (272)
T ss_pred eEEEECc--cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh---cC----cEE-eCCcHHHH----------hh
Confidence 5677787 555555555331 123699999887665544332 23 222 23332322 34
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
-|+||+...+....+.++.+.+.++++.+++
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvI 94 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKNDVIVV 94 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCCcEEE
Confidence 5999998777777888888877777664433
No 481
>PRK09028 cystathionine beta-lyase; Provisional
Probab=84.97 E-value=20 Score=29.54 Aligned_cols=124 Identities=12% Similarity=0.077 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764 6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALSV 84 (188)
Q Consensus 6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 84 (188)
|....+=+.++.......++-..+|+......+...++++.+|+..+..- .....+...+...|. .+.++..+..+.
T Consensus 61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~ 138 (394)
T PRK09028 61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEG 138 (394)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHH
Confidence 33344444555555555677666666555444433455578888887643 333444444555553 244443322233
Q ss_pred HHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccccCc
Q 029764 85 LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLWGG 136 (188)
Q Consensus 85 ~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~~g 136 (188)
+.... ...-.+|++... +......++.+.++.+..| .+++|++...+
T Consensus 139 l~~~l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 139 IRELI-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred HHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 33322 234678888742 3233455677777777655 55666666443
No 482
>PRK07877 hypothetical protein; Provisional
Probab=84.83 E-value=15 Score=32.96 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=49.3
Q ss_pred HcCCCEEEEEcccchHHHHH-HHhhCCCC-CEEEEEeCCc------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764 18 LVNAKKTIEIGVFTGYSLLL-TALTIPED-GQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 18 ~~~~~~vLeiG~g~G~~~~~-la~~~~~~-~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
..+..+|+-+|||.|+.... |+.. . . ++++.+|.+. ...+.+++.+...+-.-+++.+
T Consensus 104 ~L~~~~V~IvG~GlGs~~a~~Lara-G-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 104 RLGRLRIGVVGLSVGHAIAHTLAAE-G-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHhcCCEEEEEecHHHHHHHHHHHc-c-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 34556899999998875544 4443 1 2 6888887632 3445566666665533456666
Q ss_pred EcchH-HHHHHHhhcccCCCceeEEEEeCCc
Q 029764 78 ESEAL-SVLDQLLKYSENEGSFDYAFVDADK 107 (188)
Q Consensus 78 ~~d~~-~~~~~~~~~~~~~~~~D~i~id~~~ 107 (188)
..... +.+.++ ...+|+|+-..+.
T Consensus 182 ~~~i~~~n~~~~------l~~~DlVvD~~D~ 206 (722)
T PRK07877 182 TDGLTEDNVDAF------LDGLDVVVEECDS 206 (722)
T ss_pred eccCCHHHHHHH------hcCCCEEEECCCC
Confidence 65433 234444 2568988865443
No 483
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=84.81 E-value=17 Score=28.61 Aligned_cols=103 Identities=21% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029764 17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY 91 (188)
Q Consensus 17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~ 91 (188)
...++.+||-.|+ +.|..++.+|+.. +.+++.+..+++..+.-++.+...+...-+..... +..+.+..+.
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~-- 218 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP-- 218 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc--
Confidence 3456778888774 5677777788875 45665554444222222333333443221111111 2223333221
Q ss_pred ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
.+.+|+|+-.... ..+..+++.|+++|.++.-
T Consensus 219 ---~~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 219 ---GGRPKLALNCVGG----KSATELARLLSPGGTMVTY 250 (341)
T ss_pred ---CCCceEEEECcCc----HhHHHHHHHhCCCCEEEEE
Confidence 1268988843221 1234567889999988853
No 484
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.74 E-value=3.8 Score=31.80 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=48.9
Q ss_pred EEEEEcccchHHHHHHHhhCCCC---CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764 23 KTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 99 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 99 (188)
+|.=||+ |..+..++..+... .+|+++|.+++..+.+++ .+... . ..+.. .. ...|
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~---~-~~~~~----~~-------~~aD 60 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD---E-IVSFE----EL-------KKCD 60 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc---c-cCCHH----HH-------hcCC
Confidence 3556676 44444444443212 379999998887665432 33211 1 11211 12 2379
Q ss_pred EEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 100 YAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
+||+........+.+..+.+ ++++.+++
T Consensus 61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 61 VIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 99998777777777788777 77776444
No 485
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.72 E-value=16 Score=27.96 Aligned_cols=92 Identities=17% Similarity=0.142 Sum_probs=47.9
Q ss_pred HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764 18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 77 (188)
Q Consensus 18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
..+..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+++.+.+.+..-+++.+
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3345789999997 3544333333322 46888887532 2334455666655433334444
Q ss_pred EcchH-HHHHHHhhcccCCCceeEEEEeCCccchHHHHHH
Q 029764 78 ESEAL-SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 116 (188)
Q Consensus 78 ~~d~~-~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~ 116 (188)
..... +...++ ...+|+|+...+.......+..
T Consensus 100 ~~~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~ln~ 133 (240)
T TIGR02355 100 NAKLDDAELAAL------IAEHDIVVDCTDNVEVRNQLNR 133 (240)
T ss_pred eccCCHHHHHHH------hhcCCEEEEcCCCHHHHHHHHH
Confidence 43322 123333 3679999866544333333333
No 486
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.68 E-value=14 Score=27.40 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=45.8
Q ss_pred CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE 95 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~ 95 (188)
++++|+-.|++ |..+..+++.+ ..+.+|++++.+++....+.+.+... .++.++..|..+. +..+.+.. ...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45788888875 44445555444 23679999998877665554444332 2467777765431 11111110 012
Q ss_pred CceeEEEEeC
Q 029764 96 GSFDYAFVDA 105 (188)
Q Consensus 96 ~~~D~i~id~ 105 (188)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 5678887654
No 487
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=84.63 E-value=22 Score=29.53 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEe-CCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALS 83 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 83 (188)
.|....+-..++.......++-.-+|...+...+....+.+.++++.+ +-.......++...+.|.. ..++..+-.+
T Consensus 76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~ 153 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLK 153 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHH
Confidence 355556666777788888899999988777777777777788888886 3345556666666655543 3455544433
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccccCc
Q 029764 84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLWGG 136 (188)
Q Consensus 84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~~g 136 (188)
-+.... .+..++||+..+ +-.....+..+.++.+..| .+|+||++...
T Consensus 154 ~~~~~i-----~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 154 KILKAI-----KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred HHHHhh-----ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 333321 345899999853 2222233455555555555 66667766544
No 488
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=84.54 E-value=16 Score=28.57 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=57.3
Q ss_pred HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+|+-.|+ +.|..++.+|+.. +.+++.++.+++..+.+++ .+...-+.....+..+.+....
T Consensus 136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----- 204 (329)
T cd08250 136 EMKSGETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCSSDEKAEFLKS----LGCDRPINYKTEDLGEVLKKEY----- 204 (329)
T ss_pred CCCCCCEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHH----cCCceEEeCCCccHHHHHHHhc-----
Confidence 4456778888874 5667777788775 5678888877766555533 3431111111112222222221
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
...+|+++-... ...+..+++.++++|.++.
T Consensus 205 ~~~vd~v~~~~g----~~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 205 PKGVDVVYESVG----GEMFDTCVDNLALKGRLIV 235 (329)
T ss_pred CCCCeEEEECCc----HHHHHHHHHHhccCCeEEE
Confidence 246898874322 2456777889999998875
No 489
>PRK07680 late competence protein ComER; Validated
Probab=84.52 E-value=5.6 Score=30.80 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=49.7
Q ss_pred EEEEEcccchHHHHHHHhhCCC-C----CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 23 KTIEIGVFTGYSLLLTALTIPE-D----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~-~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
+|.=||+ |..+..++..+.. + ..++..+.+++..+.+.+. .+ .+.. ..+..+.+ ..
T Consensus 2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~---~~---g~~~-~~~~~~~~----------~~ 62 (273)
T PRK07680 2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER---YP---GIHV-AKTIEEVI----------SQ 62 (273)
T ss_pred EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH---cC---CeEE-ECCHHHHH----------Hh
Confidence 3566776 5544444443321 1 3688888887665443322 11 2332 23333322 35
Q ss_pred eeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764 98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 128 (188)
Q Consensus 98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 128 (188)
.|+||+...+....+.++.+.+.++++..++
T Consensus 63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence 6899988766666777788877887776544
No 490
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=84.49 E-value=8.5 Score=32.45 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=56.6
Q ss_pred HHcCCCEEEEEcccchHHHHHHHhhCCC-CCEEE------EEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764 17 RLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIT------AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 89 (188)
Q Consensus 17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~------~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (188)
...++++|+-|||| ..+...|..+.. +..++ +||.+....+.|++. |+ ...+..+.+
T Consensus 32 ~~LkgKtIaIIGyG--SqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d----GF------~v~~~~Ea~---- 95 (487)
T PRK05225 32 SYLKGKKIVIVGCG--AQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN----GF------KVGTYEELI---- 95 (487)
T ss_pred HHhCCCEEEEEccC--HHHHHHhCCCccccceeEEeccccccccccchHHHHHhc----CC------ccCCHHHHH----
Confidence 45677899999995 444444544431 33444 455555555544432 43 223443332
Q ss_pred hcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764 90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 131 (188)
Q Consensus 90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 131 (188)
...|+|++-.+......+.+.+.+.||+|..|.+.-
T Consensus 96 ------~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 96 ------PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred ------HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 467888876544344556688899999999999854
No 491
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.25 E-value=8.9 Score=28.52 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=40.7
Q ss_pred cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764 19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 97 (188)
Q Consensus 19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 97 (188)
..+++||-+|.| .++..-++.+ ..+++|+.++.+.. ...++. ... .+++++.++.... . ...
T Consensus 7 l~gk~vlVvGgG--~va~rk~~~Ll~~ga~VtVvsp~~~--~~l~~l-~~~---~~i~~~~~~~~~~--d-------l~~ 69 (205)
T TIGR01470 7 LEGRAVLVVGGG--DVALRKARLLLKAGAQLRVIAEELE--SELTLL-AEQ---GGITWLARCFDAD--I-------LEG 69 (205)
T ss_pred cCCCeEEEECcC--HHHHHHHHHHHHCCCEEEEEcCCCC--HHHHHH-HHc---CCEEEEeCCCCHH--H-------hCC
Confidence 346789999985 3333322222 22678888876543 222222 222 2688888775421 2 267
Q ss_pred eeEEEEeCC
Q 029764 98 FDYAFVDAD 106 (188)
Q Consensus 98 ~D~i~id~~ 106 (188)
+|+|++..+
T Consensus 70 ~~lVi~at~ 78 (205)
T TIGR01470 70 AFLVIAATD 78 (205)
T ss_pred cEEEEECCC
Confidence 999998643
No 492
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=84.15 E-value=17 Score=27.96 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=58.2
Q ss_pred HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764 17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 94 (188)
Q Consensus 17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 94 (188)
...++.+|+-.|+ +.|..++.+++.. +.+++.++.+++..+.+++ .+...-+.....+..+.+.... .
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----~ 205 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT----G 205 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc----C
Confidence 3446678998887 4566666677764 5689999888876665543 2432111111122323233321 1
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 130 (188)
...+|+++-.... .....+.+.++++|.++..
T Consensus 206 ~~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 206 GRGVDVVYDPVGG----DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCCcEEEEECccH----HHHHHHHHhhccCCEEEEE
Confidence 3468988743221 3456677889999988754
No 493
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.10 E-value=16 Score=27.68 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=49.2
Q ss_pred CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE 95 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~ 95 (188)
+++++|-.|+.. ..+..+++.+ ..+.+|+.++.+++..+...+.+...+...++.++..|..+. +..+.+.. ...
T Consensus 6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467889888754 4444444433 236789999998887776666665422234577777775431 12221110 113
Q ss_pred CceeEEEEeC
Q 029764 96 GSFDYAFVDA 105 (188)
Q Consensus 96 ~~~D~i~id~ 105 (188)
+.+|.++...
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 6789888653
No 494
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.91 E-value=9.5 Score=28.80 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=47.5
Q ss_pred EEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHH-HHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764 23 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLP-IIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 98 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~ 98 (188)
+++=+|+ |..+..+|+.+.. +..|+.||.+++..+.... .+ ....+++|+.+ .+.+. .-..+
T Consensus 2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~a-----gi~~a 67 (225)
T COG0569 2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEA-----GIDDA 67 (225)
T ss_pred EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhc-----CCCcC
Confidence 5667777 6666666666643 3589999999987765332 11 35677777754 45543 24689
Q ss_pred eEEEEeCCccc
Q 029764 99 DYAFVDADKDN 109 (188)
Q Consensus 99 D~i~id~~~~~ 109 (188)
|++++.-....
T Consensus 68 D~vva~t~~d~ 78 (225)
T COG0569 68 DAVVAATGNDE 78 (225)
T ss_pred CEEEEeeCCCH
Confidence 99988754433
No 495
>PRK06914 short chain dehydrogenase; Provisional
Probab=83.88 E-value=17 Score=27.79 Aligned_cols=81 Identities=22% Similarity=0.179 Sum_probs=47.8
Q ss_pred CCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--H---HHHhhcccC
Q 029764 21 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L---DQLLKYSEN 94 (188)
Q Consensus 21 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~---~~~~~~~~~ 94 (188)
.+++|-+|+ +|..+..+++.+ ..+.+|++++-+++..+...+.....+...++.++..|..+. + ....+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--- 78 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--- 78 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh---
Confidence 457788785 344444544433 236789999888776666555554444445688888876542 1 112111
Q ss_pred CCceeEEEEeC
Q 029764 95 EGSFDYAFVDA 105 (188)
Q Consensus 95 ~~~~D~i~id~ 105 (188)
.+..|.|+...
T Consensus 79 ~~~id~vv~~a 89 (280)
T PRK06914 79 IGRIDLLVNNA 89 (280)
T ss_pred cCCeeEEEECC
Confidence 35789887653
No 496
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.81 E-value=9.7 Score=32.28 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=41.6
Q ss_pred CCceeEEEEeC--Cccc---hHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029764 95 EGSFDYAFVDA--DKDN---YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 168 (188)
Q Consensus 95 ~~~~D~i~id~--~~~~---~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (188)
.++||+|++|- ..++ ...-+..+...-+|+=++.+-+++... . ....+..|++.+.+++
T Consensus 464 ~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-------d--------sv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 464 NQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-------D--------SVDQLKKFNRALADHS 527 (587)
T ss_pred hcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-------H--------HHHHHHHHHHHHhcCC
Confidence 47999999993 2223 334455556777888888887777521 1 4566999999999887
No 497
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=83.57 E-value=11 Score=29.45 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCC
Q 029764 20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG 96 (188)
Q Consensus 20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~ 96 (188)
++++||-.|+ +|+.+..+++.+- .+.+|++++.++.............+..++++++.+|..+. +... ..
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~ 75 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD 75 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence 3567887774 6887777776653 25688888776554332222211112234688898887652 3333 24
Q ss_pred ceeEEEEeC
Q 029764 97 SFDYAFVDA 105 (188)
Q Consensus 97 ~~D~i~id~ 105 (188)
.+|.||..+
T Consensus 76 ~~d~Vih~A 84 (322)
T PLN02662 76 GCEGVFHTA 84 (322)
T ss_pred CCCEEEEeC
Confidence 578887654
No 498
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.57 E-value=3.8 Score=32.55 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764 95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 129 (188)
Q Consensus 95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 129 (188)
...+|+|++..-.-+..+.++.+.+.+++...+++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence 46899999987666778899999999999986665
No 499
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.43 E-value=10 Score=24.91 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=52.5
Q ss_pred EEEEEcccchHHHHH-HHhhCCCCCEEE-EEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764 23 KTIEIGVFTGYSLLL-TALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 100 (188)
Q Consensus 23 ~vLeiG~g~G~~~~~-la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 100 (188)
+|.=||+|.-..... -+....++.+++ .+|.+++..+.+.+ ..+ +. .-.|..+.+.. ..+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~~----~~-~~~~~~~ll~~--------~~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE---KYG----IP-VYTDLEELLAD--------EDVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HTT----SE-EESSHHHHHHH--------TTESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hhc----cc-chhHHHHHHHh--------hcCCE
Confidence 577789865532222 222222356665 46888876665533 334 23 45555555443 58999
Q ss_pred EEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764 101 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 133 (188)
Q Consensus 101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 133 (188)
|++..+.....+. +...++.|--+++.-++
T Consensus 66 V~I~tp~~~h~~~---~~~~l~~g~~v~~EKP~ 95 (120)
T PF01408_consen 66 VIIATPPSSHAEI---AKKALEAGKHVLVEKPL 95 (120)
T ss_dssp EEEESSGGGHHHH---HHHHHHTTSEEEEESSS
T ss_pred EEEecCCcchHHH---HHHHHHcCCEEEEEcCC
Confidence 9998766554444 44455566677765444
No 500
>PRK06234 methionine gamma-lyase; Provisional
Probab=83.26 E-value=24 Score=29.03 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCch-hHHHHHHHHHhcCCCCcEEEEEc-chH
Q 029764 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL 82 (188)
Q Consensus 5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~ 82 (188)
.|...++-+.++.......++-+++|++.....+...++++.+|+..+..-. ........+...|. ++.++.. |..
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e 140 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE 140 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence 4556677777777766667787877776655545444555677777654221 22222333344443 2344333 333
Q ss_pred HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCc---CeEEEEeccccCc
Q 029764 83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV---GGIAVYDNTLWGG 136 (188)
Q Consensus 83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~---gG~lv~~~~~~~g 136 (188)
++...+ ...-.+|++... +......++.+.++.+. |-.+++|+++..+
T Consensus 141 ~l~~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 141 EVRNAL------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred HHHHHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 332222 234578887642 11111224444444444 6678888876533
Done!