Query 029765
Match_columns 188
No_of_seqs 128 out of 1104
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 1.2E-13 2.5E-18 90.2 6.0 53 8-60 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.5 6.4E-14 1.4E-18 92.3 4.7 58 6-63 2-59 (60)
3 smart00353 HLH helix loop heli 99.4 1.5E-12 3.2E-17 84.0 6.6 52 13-64 1-52 (53)
4 KOG1318 Helix loop helix trans 98.9 4.5E-09 9.8E-14 93.3 7.0 59 8-66 233-292 (411)
5 KOG2483 Upstream transcription 98.6 1.6E-07 3.5E-12 78.1 8.1 70 4-73 55-124 (232)
6 KOG1319 bHLHZip transcription 98.5 2.7E-07 5.9E-12 73.8 6.6 67 8-74 62-132 (229)
7 KOG4029 Transcription factor H 98.4 4.4E-07 9.6E-12 75.3 4.5 63 6-68 107-170 (228)
8 PLN03217 transcription factor 98.3 2.9E-06 6.2E-11 59.7 5.9 56 20-75 19-77 (93)
9 KOG3561 Aryl-hydrocarbon recep 98.1 2.1E-06 4.5E-11 82.1 4.2 52 8-62 20-75 (803)
10 KOG4304 Transcriptional repres 98.0 3.1E-06 6.8E-11 71.3 2.7 59 7-65 31-94 (250)
11 cd04895 ACT_ACR_1 ACT domain-c 98.0 0.00014 3E-09 50.1 9.9 67 114-183 3-69 (72)
12 cd04897 ACT_ACR_3 ACT domain-c 97.9 0.00018 4E-09 49.9 9.7 66 114-182 3-72 (75)
13 cd04927 ACT_ACR-like_2 Second 97.8 0.00027 5.8E-09 48.8 9.5 70 114-184 2-73 (76)
14 cd04900 ACT_UUR-like_1 ACT dom 97.8 0.0005 1.1E-08 46.8 10.2 66 114-182 3-69 (73)
15 cd04928 ACT_TyrKc Uncharacteri 97.8 0.00052 1.1E-08 46.7 9.8 65 114-183 3-68 (68)
16 KOG3960 Myogenic helix-loop-he 97.8 0.00017 3.6E-09 60.4 8.6 67 6-73 116-182 (284)
17 cd04896 ACT_ACR-like_3 ACT dom 97.8 0.00037 7.9E-09 48.4 9.0 67 115-182 3-72 (75)
18 KOG0561 bHLH transcription fac 97.6 3.4E-05 7.4E-10 66.0 2.8 57 9-66 61-117 (373)
19 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.0031 6.7E-08 41.8 10.2 64 115-182 3-66 (70)
20 cd04925 ACT_ACR_2 ACT domain-c 97.4 0.0033 7.2E-08 42.9 10.2 67 115-184 3-74 (74)
21 cd04926 ACT_ACR_4 C-terminal 97.3 0.0048 1E-07 41.9 9.7 66 114-183 3-68 (72)
22 KOG2588 Predicted DNA-binding 97.1 0.00029 6.2E-09 68.2 2.7 66 6-74 274-340 (953)
23 PRK00275 glnD PII uridylyl-tra 96.6 0.024 5.2E-07 55.8 11.7 80 102-184 802-887 (895)
24 cd04873 ACT_UUR-ACR-like ACT d 96.6 0.047 1E-06 35.6 9.7 64 115-182 3-66 (70)
25 PRK03381 PII uridylyl-transfer 96.5 0.037 8.1E-07 53.7 12.1 81 102-185 588-669 (774)
26 PF13740 ACT_6: ACT domain; PD 96.4 0.044 9.6E-07 37.4 8.9 65 113-183 3-67 (76)
27 PF01842 ACT: ACT domain; Int 96.4 0.041 8.8E-07 35.5 8.3 64 114-182 2-65 (66)
28 KOG4447 Transcription factor T 96.2 0.0035 7.5E-08 49.0 2.3 55 8-63 78-132 (173)
29 KOG3898 Transcription factor N 96.1 0.0034 7.4E-08 53.1 2.3 58 6-63 70-127 (254)
30 PF13291 ACT_4: ACT domain; PD 96.1 0.054 1.2E-06 37.0 7.8 63 113-180 7-71 (80)
31 PRK05092 PII uridylyl-transfer 96.1 0.078 1.7E-06 52.4 11.7 81 102-185 831-917 (931)
32 cd04893 ACT_GcvR_1 ACT domains 96.0 0.13 2.8E-06 35.2 9.6 65 113-183 2-66 (77)
33 PRK05007 PII uridylyl-transfer 96.0 0.053 1.1E-06 53.4 10.3 70 112-184 808-880 (884)
34 PRK00194 hypothetical protein; 96.0 0.06 1.3E-06 37.7 7.9 68 112-183 3-70 (90)
35 PRK04374 PII uridylyl-transfer 96.0 0.096 2.1E-06 51.5 11.7 79 102-183 784-867 (869)
36 TIGR01693 UTase_glnD [Protein- 96.0 0.08 1.7E-06 51.8 11.2 72 111-185 667-743 (850)
37 cd04869 ACT_GcvR_2 ACT domains 95.9 0.17 3.6E-06 34.4 9.6 65 115-184 2-72 (81)
38 PRK01759 glnD PII uridylyl-tra 95.9 0.14 3E-06 50.3 12.4 83 101-186 664-752 (854)
39 cd04872 ACT_1ZPV ACT domain pr 95.8 0.076 1.7E-06 37.1 7.8 68 113-184 2-69 (88)
40 PRK03059 PII uridylyl-transfer 95.7 0.098 2.1E-06 51.4 10.6 68 112-182 786-854 (856)
41 cd04875 ACT_F4HF-DF N-terminal 95.7 0.16 3.5E-06 34.2 8.7 68 115-184 2-69 (74)
42 PRK05007 PII uridylyl-transfer 95.6 0.16 3.5E-06 50.1 11.5 82 101-185 688-775 (884)
43 PRK03381 PII uridylyl-transfer 95.5 0.15 3.3E-06 49.5 11.2 66 112-182 707-772 (774)
44 KOG4395 Transcription factor A 95.5 0.029 6.3E-07 47.3 5.1 56 8-63 174-229 (285)
45 KOG3910 Helix loop helix trans 95.3 0.017 3.8E-07 52.8 3.5 60 7-66 525-585 (632)
46 PRK01759 glnD PII uridylyl-tra 95.2 0.16 3.4E-06 50.0 10.1 67 112-181 783-852 (854)
47 cd04887 ACT_MalLac-Enz ACT_Mal 95.1 0.29 6.2E-06 32.5 8.4 62 115-181 2-64 (74)
48 PRK03059 PII uridylyl-transfer 95.0 0.25 5.4E-06 48.6 10.9 84 102-186 666-753 (856)
49 PRK00275 glnD PII uridylyl-tra 94.9 0.28 6E-06 48.5 10.9 73 111-186 703-781 (895)
50 PRK05092 PII uridylyl-transfer 94.8 0.6 1.3E-05 46.3 13.0 84 101-185 719-807 (931)
51 cd04870 ACT_PSP_1 CT domains f 94.8 0.45 9.9E-06 32.1 8.8 64 115-183 2-65 (75)
52 cd04886 ACT_ThrD-II-like C-ter 94.6 0.38 8.3E-06 31.0 8.0 59 117-180 3-66 (73)
53 PRK04374 PII uridylyl-transfer 94.6 0.34 7.4E-06 47.7 10.7 74 110-185 688-762 (869)
54 TIGR01693 UTase_glnD [Protein- 94.4 0.32 7E-06 47.7 10.1 67 112-182 779-845 (850)
55 cd04888 ACT_PheB-BS C-terminal 94.3 0.36 7.8E-06 32.1 7.3 63 115-181 3-66 (76)
56 PRK04435 hypothetical protein; 94.1 0.49 1.1E-05 36.7 8.6 69 109-181 66-135 (147)
57 cd04880 ACT_AAAH-PDT-like ACT 93.4 0.97 2.1E-05 30.3 8.2 58 123-181 9-67 (75)
58 COG2844 GlnD UTP:GlnB (protein 93.4 0.49 1.1E-05 46.1 8.9 74 102-179 779-854 (867)
59 cd04876 ACT_RelA-SpoT ACT dom 93.3 0.72 1.6E-05 28.6 7.2 60 116-180 2-62 (71)
60 cd04881 ACT_HSDH-Hom ACT_HSDH_ 92.4 0.9 2E-05 29.7 6.9 62 114-180 2-65 (79)
61 cd04877 ACT_TyrR N-terminal AC 92.4 0.81 1.8E-05 30.7 6.7 58 115-180 3-60 (74)
62 cd04905 ACT_CM-PDT C-terminal 91.7 2.9 6.4E-05 28.3 9.3 42 123-164 11-53 (80)
63 cd04878 ACT_AHAS N-terminal AC 91.7 2.1 4.5E-05 27.3 7.9 60 115-180 3-64 (72)
64 PRK13011 formyltetrahydrofolat 90.8 2.3 5.1E-05 36.5 9.4 70 112-184 7-76 (286)
65 PRK08577 hypothetical protein; 90.6 3.8 8.2E-05 31.0 9.5 66 112-181 56-123 (136)
66 cd04894 ACT_ACR-like_1 ACT dom 90.6 2.7 5.8E-05 28.3 7.3 66 114-181 2-67 (69)
67 PRK00227 glnD PII uridylyl-tra 90.4 3.3 7.1E-05 40.0 10.8 73 111-186 545-617 (693)
68 PRK06027 purU formyltetrahydro 90.0 3.4 7.3E-05 35.5 9.7 69 112-184 6-76 (286)
69 cd02116 ACT ACT domains are co 89.8 2.6 5.6E-05 24.4 6.9 34 116-150 2-35 (60)
70 PF13710 ACT_5: ACT domain; PD 89.7 1.5 3.2E-05 29.0 5.7 55 124-183 3-59 (63)
71 cd04879 ACT_3PGDH-like ACT_3PG 89.5 3.8 8.2E-05 25.9 7.6 57 117-181 4-62 (71)
72 cd04874 ACT_Af1403 N-terminal 89.1 4.2 9.2E-05 25.9 8.0 59 115-180 3-62 (72)
73 KOG3560 Aryl-hydrocarbon recep 89.1 0.37 7.9E-06 44.9 3.1 38 17-57 34-75 (712)
74 KOG4447 Transcription factor T 88.7 0.3 6.6E-06 38.3 2.0 45 15-60 29-73 (173)
75 KOG3559 Transcriptional regula 88.5 0.49 1.1E-05 42.8 3.5 43 13-58 6-52 (598)
76 cd04903 ACT_LSD C-terminal ACT 88.0 4.9 0.00011 25.5 7.4 58 116-181 3-62 (71)
77 cd04904 ACT_AAAH ACT domain of 87.7 3.9 8.4E-05 27.6 6.9 41 123-163 10-51 (74)
78 PRK07334 threonine dehydratase 87.4 4.5 9.7E-05 36.2 9.1 64 113-181 327-395 (403)
79 COG2844 GlnD UTP:GlnB (protein 87.2 3.8 8.2E-05 40.2 8.7 79 105-186 677-759 (867)
80 cd04931 ACT_PAH ACT domain of 86.9 5.4 0.00012 28.3 7.5 64 115-181 17-81 (90)
81 cd04884 ACT_CBS C-terminal ACT 86.9 3.7 8.1E-05 27.1 6.4 55 123-181 9-66 (72)
82 KOG3558 Hypoxia-inducible fact 86.5 0.52 1.1E-05 45.0 2.6 45 10-57 48-96 (768)
83 TIGR00655 PurU formyltetrahydr 86.3 6 0.00013 33.9 8.8 62 115-180 3-66 (280)
84 cd04929 ACT_TPH ACT domain of 85.9 6.9 0.00015 26.7 7.4 42 123-164 10-52 (74)
85 PRK13010 purU formyltetrahydro 85.4 6.4 0.00014 33.9 8.6 69 113-184 10-80 (289)
86 COG3830 ACT domain-containing 85.2 2 4.4E-05 30.7 4.5 66 113-182 4-69 (90)
87 TIGR00119 acolac_sm acetolacta 83.7 7.3 0.00016 30.6 7.5 63 115-183 4-68 (157)
88 PRK11895 ilvH acetolactate syn 83.5 7.6 0.00016 30.7 7.6 63 115-183 5-69 (161)
89 cd04902 ACT_3PGDH-xct C-termin 83.4 6 0.00013 25.6 6.1 53 122-181 8-62 (73)
90 COG4492 PheB ACT domain-contai 82.8 9.2 0.0002 29.5 7.5 65 113-181 73-138 (150)
91 PRK11152 ilvM acetolactate syn 82.5 14 0.00029 25.5 8.1 55 123-183 13-69 (76)
92 cd04883 ACT_AcuB C-terminal AC 80.6 13 0.00028 24.1 8.7 60 114-181 3-64 (72)
93 PF05088 Bac_GDH: Bacterial NA 79.9 15 0.00032 38.7 10.0 68 112-182 489-561 (1528)
94 cd04889 ACT_PDH-BS-like C-term 79.5 12 0.00026 23.2 6.3 38 123-160 8-46 (56)
95 cd04930 ACT_TH ACT domain of t 78.5 11 0.00024 28.0 6.6 42 123-164 51-93 (115)
96 cd04901 ACT_3PGDH C-terminal A 77.9 3 6.5E-05 26.9 3.1 52 122-180 8-59 (69)
97 cd04908 ACT_Bt0572_1 N-termina 77.7 16 0.00035 23.6 8.2 44 115-161 4-47 (66)
98 PRK06737 acetolactate synthase 77.5 18 0.00039 24.9 7.0 63 115-183 5-69 (76)
99 cd04882 ACT_Bt0572_2 C-termina 76.6 11 0.00025 23.6 5.6 49 123-180 9-59 (65)
100 PRK10872 relA (p)ppGpp synthet 74.8 17 0.00037 35.5 8.4 64 113-181 667-732 (743)
101 PRK11899 prephenate dehydratas 72.5 23 0.0005 30.4 7.9 56 122-181 203-259 (279)
102 PRK11589 gcvR glycine cleavage 71.9 13 0.00027 30.2 5.8 65 112-182 8-72 (190)
103 PRK11898 prephenate dehydratas 71.8 22 0.00048 30.4 7.7 47 118-164 202-249 (283)
104 TIGR00691 spoT_relA (p)ppGpp s 71.8 21 0.00046 34.4 8.3 64 113-181 611-675 (683)
105 PRK11092 bifunctional (p)ppGpp 71.7 21 0.00046 34.6 8.3 64 113-181 627-691 (702)
106 PF02120 Flg_hook: Flagellar h 70.9 23 0.0005 24.0 6.3 47 103-149 28-79 (85)
107 cd04909 ACT_PDH-BS C-terminal 70.7 25 0.00055 22.6 7.7 35 114-149 3-37 (69)
108 cd04868 ACT_AK-like ACT domain 70.3 20 0.00044 21.3 5.9 27 123-149 13-39 (60)
109 PRK11589 gcvR glycine cleavage 66.6 52 0.0011 26.6 8.4 68 113-183 96-167 (190)
110 PRK13562 acetolactate synthase 64.0 43 0.00094 23.6 6.5 63 115-182 5-69 (84)
111 CHL00100 ilvH acetohydroxyacid 63.1 50 0.0011 26.4 7.6 63 115-183 5-69 (174)
112 PRK10622 pheA bifunctional cho 62.4 44 0.00096 30.0 7.9 56 122-181 306-362 (386)
113 cd04898 ACT_ACR-like_4 ACT dom 59.3 24 0.00053 24.5 4.4 65 119-184 6-76 (77)
114 cd04922 ACT_AKi-HSDH-ThrA_2 AC 57.8 44 0.00096 20.9 6.4 34 115-148 4-39 (66)
115 cd04885 ACT_ThrD-I Tandem C-te 57.0 51 0.0011 21.4 6.8 53 123-180 8-61 (68)
116 COG3074 Uncharacterized protei 56.3 24 0.00052 24.2 3.9 26 49-74 13-38 (79)
117 PRK14637 hypothetical protein; 55.8 90 0.002 24.2 7.7 60 123-183 7-66 (151)
118 KOG3582 Mlx interactors and re 54.5 3.7 8.1E-05 39.5 -0.3 65 6-70 649-715 (856)
119 PRK15385 magnesium transport p 54.2 1E+02 0.0022 25.8 8.2 66 112-179 142-210 (225)
120 PRK08198 threonine dehydratase 52.8 1.2E+02 0.0026 26.9 9.1 64 112-180 327-395 (404)
121 PLN02317 arogenate dehydratase 51.2 94 0.002 28.0 8.0 54 123-180 293-361 (382)
122 COG0077 PheA Prephenate dehydr 51.0 88 0.0019 27.0 7.5 56 122-181 203-259 (279)
123 PF06005 DUF904: Protein of un 50.1 39 0.00085 23.0 4.3 25 49-73 13-37 (72)
124 COG3978 Acetolactate synthase 48.6 94 0.002 21.9 7.5 63 114-183 5-69 (86)
125 TIGR01127 ilvA_1Cterm threonin 48.2 1.5E+02 0.0033 25.9 9.0 64 113-181 306-374 (380)
126 PF09789 DUF2353: Uncharacteri 47.4 82 0.0018 27.7 6.9 35 41-75 66-100 (319)
127 PF05687 DUF822: Plant protein 47.0 24 0.00053 27.5 3.2 27 8-34 11-37 (150)
128 PRK14638 hypothetical protein; 46.5 1E+02 0.0022 23.9 6.7 54 130-183 14-67 (150)
129 cd04891 ACT_AK-LysC-DapG-like_ 46.2 64 0.0014 19.3 5.8 38 122-159 10-48 (61)
130 COG0788 PurU Formyltetrahydrof 45.5 1.5E+02 0.0033 25.6 8.0 69 112-182 7-75 (287)
131 PRK08178 acetolactate synthase 45.4 1.2E+02 0.0025 22.0 7.6 63 113-182 9-73 (96)
132 PRK06382 threonine dehydratase 45.3 1.5E+02 0.0032 26.5 8.5 64 113-181 331-399 (406)
133 PF02344 Myc-LZ: Myc leucine z 45.2 27 0.00059 20.1 2.4 17 16-32 13-29 (32)
134 cd04919 ACT_AK-Hom3_2 ACT doma 44.6 78 0.0017 19.8 6.5 26 123-148 14-39 (66)
135 PF14689 SPOB_a: Sensor_kinase 44.1 80 0.0017 20.5 5.0 41 17-67 17-57 (62)
136 PRK14639 hypothetical protein; 43.3 1.1E+02 0.0025 23.3 6.5 53 130-183 3-55 (140)
137 PRK15422 septal ring assembly 42.4 55 0.0012 22.9 4.1 26 49-74 13-38 (79)
138 cd04892 ACT_AK-like_2 ACT doma 42.3 77 0.0017 19.1 5.9 25 124-148 14-38 (65)
139 TIGR01268 Phe4hydrox_tetr phen 41.7 1.1E+02 0.0023 28.2 6.9 42 123-164 26-68 (436)
140 cd04913 ACT_AKii-LysC-BS-like_ 41.2 90 0.0019 19.6 6.3 39 122-160 11-50 (75)
141 smart00338 BRLZ basic region l 39.8 46 0.001 21.6 3.4 23 52-74 24-46 (65)
142 PF14992 TMCO5: TMCO5 family 39.1 52 0.0011 28.4 4.3 31 43-73 140-170 (280)
143 PTZ00324 glutamate dehydrogena 39.0 2.6E+02 0.0057 28.5 9.7 78 101-180 216-299 (1002)
144 PF00170 bZIP_1: bZIP transcri 38.5 53 0.0011 21.3 3.5 22 53-74 25-46 (64)
145 TIGR01270 Trp_5_monoox tryptop 38.1 1.1E+02 0.0025 28.2 6.6 41 123-163 41-83 (464)
146 PRK14645 hypothetical protein; 37.8 1.9E+02 0.0042 22.5 7.4 56 129-184 14-70 (154)
147 PF07544 Med9: RNA polymerase 37.1 1.4E+02 0.003 20.6 5.7 47 22-73 32-78 (83)
148 cd04890 ACT_AK-like_1 ACT doma 37.1 1E+02 0.0023 19.1 5.8 23 124-146 14-36 (62)
149 cd04932 ACT_AKiii-LysC-EC_1 AC 36.6 1.3E+02 0.0028 20.1 6.0 24 123-146 14-37 (75)
150 cd04923 ACT_AK-LysC-DapG-like_ 36.3 1E+02 0.0022 18.8 6.2 24 124-147 14-37 (63)
151 PRK14647 hypothetical protein; 36.3 2.1E+02 0.0045 22.3 7.2 53 130-183 14-66 (159)
152 PF07293 DUF1450: Protein of u 36.0 1E+02 0.0022 21.4 4.7 62 127-188 16-78 (78)
153 PF07485 DUF1529: Domain of Un 35.5 1.8E+02 0.0038 21.9 6.3 52 126-183 69-121 (123)
154 cd04918 ACT_AK1-AT_2 ACT domai 34.9 1.2E+02 0.0027 19.3 5.2 30 124-153 14-43 (65)
155 COG4747 ACT domain-containing 34.8 1.8E+02 0.0039 22.2 6.1 41 114-155 5-45 (142)
156 COG0317 SpoT Guanosine polypho 34.4 1.9E+02 0.0041 28.3 7.7 64 113-181 628-692 (701)
157 PRK13669 hypothetical protein; 34.2 1.1E+02 0.0023 21.3 4.5 62 127-188 16-78 (78)
158 PF12289 Rotavirus_VP1: Rotavi 33.9 44 0.00094 21.0 2.2 29 17-47 21-50 (52)
159 PRK14630 hypothetical protein; 33.0 2.3E+02 0.0049 21.8 6.9 54 130-184 14-67 (143)
160 PF02576 DUF150: Uncharacteris 32.6 1.8E+02 0.0038 21.9 6.0 52 132-184 4-55 (141)
161 PRK14644 hypothetical protein; 32.2 1.6E+02 0.0034 22.5 5.6 49 132-184 6-54 (136)
162 PRK14640 hypothetical protein; 32.1 2.4E+02 0.0052 21.8 7.0 54 130-184 12-65 (152)
163 PRK14634 hypothetical protein; 31.5 2.4E+02 0.0051 21.9 6.7 52 132-183 15-67 (155)
164 PF04508 Pox_A_type_inc: Viral 31.2 84 0.0018 16.8 2.8 17 56-72 3-19 (23)
165 cd04911 ACT_AKiii-YclM-BS_1 AC 31.1 1.8E+02 0.0038 20.0 5.3 53 125-183 16-68 (76)
166 PRK14646 hypothetical protein; 31.1 2.5E+02 0.0055 21.8 7.3 55 129-183 12-67 (155)
167 PF10393 Matrilin_ccoil: Trime 29.4 1.5E+02 0.0032 18.6 4.1 27 48-74 17-43 (47)
168 PRK14641 hypothetical protein; 28.5 2.6E+02 0.0057 22.2 6.5 48 135-183 20-67 (173)
169 PRK06635 aspartate kinase; Rev 28.3 2.8E+02 0.0061 24.5 7.5 52 109-160 259-311 (404)
170 cd04937 ACT_AKi-DapG-BS_2 ACT 28.3 1.6E+02 0.0035 18.6 4.9 22 123-144 14-35 (64)
171 PRK08526 threonine dehydratase 28.1 4.4E+02 0.0096 23.6 8.7 64 113-181 327-395 (403)
172 PRK06291 aspartate kinase; Pro 27.6 3.2E+02 0.0069 24.9 7.8 39 112-150 321-361 (465)
173 PF13224 DUF4032: Domain of un 26.9 1.3E+02 0.0029 23.9 4.5 40 126-165 20-59 (165)
174 COG1591 Holliday junction reso 26.9 3E+02 0.0065 21.2 6.4 51 127-178 10-72 (137)
175 PF09383 NIL: NIL domain; Int 26.8 1.9E+02 0.0042 19.0 8.4 39 125-164 17-55 (76)
176 PRK14632 hypothetical protein; 26.5 3.2E+02 0.0068 21.6 6.7 50 132-183 16-65 (172)
177 PF12180 EABR: TSG101 and ALIX 26.5 74 0.0016 18.7 2.2 13 54-66 23-35 (35)
178 PF08490 DUF1744: Domain of un 26.4 1.6E+02 0.0034 26.7 5.4 52 127-188 320-371 (396)
179 cd04936 ACT_AKii-LysC-BS-like_ 26.2 1.6E+02 0.0034 17.8 6.2 24 124-147 14-37 (63)
180 PF14193 DUF4315: Domain of un 25.5 1.5E+02 0.0033 20.7 4.2 27 49-75 10-36 (83)
181 PF08826 DMPK_coil: DMPK coile 25.4 1.8E+02 0.004 19.1 4.3 26 49-74 34-59 (61)
182 cd04916 ACT_AKiii-YclM-BS_2 AC 25.4 1.7E+02 0.0037 18.0 6.3 26 123-148 14-39 (66)
183 cd04912 ACT_AKiii-LysC-EC-like 25.2 2.1E+02 0.0045 18.8 8.1 24 123-146 14-37 (75)
184 PF09849 DUF2076: Uncharacteri 25.1 1.7E+02 0.0037 24.7 5.1 51 20-73 6-74 (247)
185 PRK14633 hypothetical protein; 24.9 3.3E+02 0.0071 21.0 6.4 53 129-183 9-61 (150)
186 PRK12729 fliE flagellar hook-b 24.3 2E+02 0.0042 22.0 4.8 29 41-69 54-82 (127)
187 PF00679 EFG_C: Elongation fac 24.3 2.4E+02 0.0052 19.2 6.8 63 114-187 8-70 (89)
188 cd04915 ACT_AK-Ectoine_2 ACT d 23.6 2.1E+02 0.0046 18.4 4.6 27 124-150 15-41 (66)
189 PRK00092 ribosome maturation p 23.6 3.4E+02 0.0074 20.8 7.1 53 130-183 13-65 (154)
190 PF09186 DUF1949: Domain of un 23.4 1.8E+02 0.0039 17.5 7.4 50 126-185 7-56 (56)
191 TIGR00657 asp_kinases aspartat 22.9 4.9E+02 0.011 23.4 8.1 38 109-146 299-337 (441)
192 cd04921 ACT_AKi-HSDH-ThrA-like 22.6 2.3E+02 0.0049 18.4 6.6 25 123-147 14-38 (80)
193 cd04935 ACT_AKiii-DAPDC_1 ACT 22.6 2.4E+02 0.0053 18.7 7.7 53 124-180 15-67 (75)
194 KOG3896 Dynactin, subunit p62 22.5 1E+02 0.0022 27.6 3.3 26 48-73 140-165 (449)
195 KOG3820 Aromatic amino acid hy 22.2 4.3E+02 0.0093 24.3 7.2 55 124-181 47-102 (461)
196 cd04910 ACT_AK-Ectoine_1 ACT d 22.1 2.6E+02 0.0056 18.9 5.3 49 125-182 16-64 (71)
197 COG0013 AlaS Alanyl-tRNA synth 21.8 8.4E+02 0.018 24.7 14.1 59 125-185 788-846 (879)
198 COG4710 Predicted DNA-binding 21.5 1.9E+02 0.0041 20.0 3.8 32 22-60 15-47 (80)
199 cd04924 ACT_AK-Arch_2 ACT doma 21.4 2.1E+02 0.0046 17.5 6.4 35 124-160 15-49 (66)
200 cd04934 ACT_AK-Hom3_1 CT domai 21.3 2.6E+02 0.0056 18.6 6.2 24 123-146 14-37 (73)
201 PF08946 Osmo_CC: Osmosensory 21.3 1.6E+02 0.0034 18.4 3.1 18 57-74 22-39 (46)
202 PRK14643 hypothetical protein; 20.8 4.2E+02 0.0091 20.8 6.8 53 131-183 16-71 (164)
203 PRK11191 RNase E inhibitor pro 20.7 4E+02 0.0086 20.5 6.5 52 126-181 45-97 (138)
204 PRK08210 aspartate kinase I; R 20.5 5E+02 0.011 23.0 7.5 38 110-147 269-306 (403)
205 PRK09977 putative Mg(2+) trans 20.3 4.9E+02 0.011 21.4 9.3 63 111-180 143-205 (215)
206 COG0779 Uncharacterized protei 20.3 3.6E+02 0.0077 21.1 5.7 51 132-183 16-66 (153)
207 PF03285 Paralemmin: Paralemmi 20.2 3.3E+02 0.0072 23.5 6.0 35 149-183 93-129 (278)
208 PF09006 Surfac_D-trimer: Lung 20.2 1.7E+02 0.0037 18.3 3.1 20 56-75 1-20 (46)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.47 E-value=1.2e-13 Score=90.15 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=47.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCChhhhHHHHHHHHHHHH
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQ--RPMEATSLPDQLDEATKYIKRLQ 60 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~--~~~~k~s~~~~l~~ai~YI~~Lq 60 (188)
+|..|+..||+||..||..|..|+.+||.. ....|.+..++|..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999986 24566777777999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.46 E-value=6.4e-14 Score=92.30 Aligned_cols=58 Identities=33% Similarity=0.488 Sum_probs=48.7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v 63 (188)
.+++..|+..||+||.+||..|..|+++||......|.+.+.+|..|++||+.|+..+
T Consensus 2 ~~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 2 KSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999843333344444999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.38 E-value=1.5e-12 Score=83.96 Aligned_cols=52 Identities=31% Similarity=0.461 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 029765 13 KTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLE 64 (188)
Q Consensus 13 ~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~ 64 (188)
+..||+||.+||+.|..|+++||......|.+...+|..|++||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999965423333444449999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.87 E-value=4.5e-09 Score=93.29 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=51.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQR-PMEATSLPDQLDEATKYIKRLQTNLERM 66 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~-~~~k~s~~~~l~~ai~YI~~Lq~~v~~L 66 (188)
+|..||+.||+||..||+++..|..|||... ...|+.+..||..+++||+.||+..+..
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999874 3456667777999999999999887743
No 5
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.61 E-value=1.6e-07 Score=78.08 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=56.8
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 4 NPSSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 4 ~~~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
+..+.|..||+.||.||.+++..|..|+.+||...-..+-+...+|..|..||+.|+.+.....+..+++
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4467899999999999999999999999999988543322245559999999999998887776655554
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.51 E-value=2.7e-07 Score=73.84 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=57.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPME----ATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~----k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
+|..|-.+||+||+-||.-|..|..|||.-...+ |.|..-||..+|+||..|......-+++...|.
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~ 132 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLR 132 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999876655 777777899999999999988877766655443
No 7
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.36 E-value=4.4e-07 Score=75.30 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=56.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRP-MEATSLPDQLDEATKYIKRLQTNLERMKE 68 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~-~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~ 68 (188)
...+..+|..||+|-+.+|..|..||.+||.... ..|.|..++|.-||.||+.|++-++.-+.
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 3457789999999999999999999999999988 88999999999999999999998876653
No 8
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.25 E-value=2.9e-06 Score=59.69 Aligned_cols=56 Identities=23% Similarity=0.480 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCCCC---CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029765 20 RNQMKALYSTLNSIVPHQR---PMEATSLPDQLDEATKYIKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 20 R~~~n~~~~~LrsllP~~~---~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~~ 75 (188)
-++||++...|+.|+|... ..+|+|-..+|.++.+||+.|+.+|.+|.++..++..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999763 2478999999999999999999999999999988875
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.13 E-value=2.1e-06 Score=82.07 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=47.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCChhhhHHHHHHHHHHHHHH
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQR----PMEATSLPDQLDEATKYIKRLQTN 62 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~----~~~k~s~~~~l~~ai~YI~~Lq~~ 62 (188)
+|..|+.+||+||++||..+.+|.+|||.-. |+||.+| |..||.+|+.+++.
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tV---Lr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTV---LRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHH---HHHHHHHHHHHhhh
Confidence 4899999999999999999999999999764 7788888 99999999999884
No 10
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.01 E-value=3.1e-06 Score=71.31 Aligned_cols=59 Identities=15% Similarity=0.310 Sum_probs=47.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCChhhhHHHHHHHHHHHHHHHHH
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPM-----EATSLPDQLDEATKYIKRLQTNLER 65 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~-----~k~s~~~~l~~ai~YI~~Lq~~v~~ 65 (188)
.++..|-..||+||.+||+.+..|+.|||...++ .|.-..+||.-+++|++.||.....
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 3577888999999999999999999999966544 3444555699999999999875443
No 11
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=0.00014 Score=50.12 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=52.6
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.|.|.+.. ++|+|.+|.++|.++||+|..|.|++.|+++.-+|.+.-.++. .++-....+.|++.+.
T Consensus 3 viev~a~D-RpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~--kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSAR-KPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN--KLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECC-cCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC--CCCCHHHHHHHHHHhc
Confidence 35666754 5679999999999999999999999999999999999855544 4555555566665543
No 12
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=0.00018 Score=49.89 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=51.4
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHH----HHHHHHHHHh
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASA----RISERLKKFG 182 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~----~l~~~L~~~i 182 (188)
.|.|.|.. ++|+|.+|..+|-++|++|.+|.|++.|+++.-+|.+.-.++. .+... .|.++|.+++
T Consensus 3 vveV~~~D-RpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~--kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 3 VVTVQCRD-RPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGR--TLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEeCC-cCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCC--ccCCHHHHHHHHHHHHHHH
Confidence 35677765 5679999999999999999999999999999999999866554 45433 4455555544
No 13
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.84 E-value=0.00027 Score=48.79 Aligned_cols=70 Identities=9% Similarity=0.008 Sum_probs=50.4
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCC-CCccHHHHHHHHHHHhcc
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKIGDSGS-DHDASARISERLKKFGQD 184 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~-~~~~~~~ti~~k~~~~~~-~~~~~~~l~~~L~~~i~~ 184 (188)
.+.|.|.. ++|+|.++..+|..+|++|++|.+++ .++.++-+|.+.-.++.. +.--...+.+.|.+++.+
T Consensus 2 ~~ei~~~D-r~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSD-RKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 56777764 56799999999999999999999996 899999999996332220 001233456666666554
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.0005 Score=46.75 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=48.2
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.|.|.|. +++|+|.++..+|..+|++|++|.+.+. +|.++-+|.+.-.++. .++.....++|++.+
T Consensus 3 ~i~v~~~-Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~--~~~~~~~~~~l~~~L 69 (73)
T cd04900 3 EVFIYTP-DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGE--PIGERERLARIREAL 69 (73)
T ss_pred EEEEEec-CCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCC--CCChHHHHHHHHHHH
Confidence 4566665 4567999999999999999999999877 6899999998744333 344444444455443
No 15
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.00052 Score=46.74 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=53.6
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.|.|.|+ .++++|.++..+|..+||+|+.|.+. +.+|.++-+|.+.-.+ +-+...+.++|+++++
T Consensus 3 eI~V~~~-Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~----~~~~~~~~~~~~~~~~ 68 (68)
T cd04928 3 EITFAAG-DKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK----RGETAALGHALQKEID 68 (68)
T ss_pred EEEEEEC-CCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC----ccchHHHHHHHHHhhC
Confidence 5666666 45679999999999999999999996 5588999999998332 4688999999998764
No 16
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.76 E-value=0.00017 Score=60.39 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=52.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
..+|..-.+.||+|=+++|+.|.+|.-=. ...+..+.-+.+||..||.||..||.-++++.+....+
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT-~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRT-SSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 34567778999999999999999997644 22334445566669999999999999999998765554
No 17
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.75 E-value=0.00037 Score=48.37 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=50.5
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEecCCCC-CCccHHHHHHHHHHHh
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN--VVEDTIFHTIHSKIGDSGS-DHDASARISERLKKFG 182 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs--~~~~~~~~ti~~k~~~~~~-~~~~~~~l~~~L~~~i 182 (188)
|.|.|.. ++|+|.+|.++|..+|++|.+|.|+ +.|+++.-+|.+...+..+ +.-....|.++|.+++
T Consensus 3 lev~a~D-RpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 3 LQIRCVD-QKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEeCC-cccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHh
Confidence 5667765 5579999999999999999999999 9999999999994333332 0112456677777665
No 18
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.63 E-value=3.4e-05 Score=66.03 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=46.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 029765 9 RTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERM 66 (188)
Q Consensus 9 ~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L 66 (188)
|..-|--||+|-+.||.-|..||+|||... ..|.|...||..+.+||.+|+..--+|
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~e-GEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKE-GEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHHhccccc
Confidence 556678899999999999999999999653 456677777999999999997655443
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0031 Score=41.81 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=47.2
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
|.|.+.. ++|+|.+|+.+|.+++++|.++.+.+.++.++.+|++.-.++. ..+. ...++|++.+
T Consensus 3 l~v~~~d-~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~--~~~~-~~~~~i~~~l 66 (70)
T cd04899 3 LELTALD-RPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQ--PLDP-ERQEALRAAL 66 (70)
T ss_pred EEEEEcC-CccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCC--cCCH-HHHHHHHHHH
Confidence 5566654 4569999999999999999999999888888999999865553 3333 3334444443
No 20
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.43 E-value=0.0033 Score=42.94 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=50.7
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecC-CCCCCc-c---HHHHHHHHHHHhcc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGD-SGSDHD-A---SARISERLKKFGQD 184 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~-~~~~~~-~---~~~l~~~L~~~i~~ 184 (188)
|.|.+. +++++|..|..+|.++|+.|++|.+.+.++.++.+|.+.-.+ +. .+ + ...|.+.|.+++.|
T Consensus 3 ~~v~~~-Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~--~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 3 IELTGT-DRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGA--PIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred EEEEEC-CCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCC--CCCCHHHHHHHHHHHHHHhcC
Confidence 566665 456799999999999999999999999999999999987332 22 12 2 35667777766653
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.31 E-value=0.0048 Score=41.87 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=49.1
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.|.|.++. ++|+|.+|..+|.++|++|++|.+.+.++..+.+|++.-.++. .++. ...++|++.+.
T Consensus 3 ri~V~~~D-~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~--~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTED-RVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGN--PVDP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECC-ccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCC--cCCH-HHHHHHHHHhc
Confidence 45555554 5579999999999999999999999888888899998744443 3443 45566776654
No 22
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.11 E-value=0.00029 Score=68.22 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=56.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQR-PMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~-~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
+.+|..||..|++=|.-||+++..|+.+||... |..|... |..||+||++|+...+.++.....+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSav---Lr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAV---LRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhh---HHHHHHHHHHhhccccccchhhhhhh
Confidence 478999999999999999999999999999775 4455666 99999999999988888776655443
No 23
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.62 E-value=0.024 Score=55.81 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=58.7
Q ss_pred CcEEEEEEC--CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccH----HHHH
Q 029765 102 PQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDAS----ARIS 175 (188)
Q Consensus 102 ~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~----~~l~ 175 (188)
|.|.+.... +...|.|.+. +++|+|.+|..+|..+|++|++|.|++.|+++.-+|.+.-.++. .++. ..|.
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~-DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~--~l~~~~~~~~l~ 878 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAP-DRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ--PLSDPQLCSRLQ 878 (895)
T ss_pred CEEEEEECCCCCeEEEEEEEC-CCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCC--CCCCHHHHHHHH
Confidence 344444332 3455666665 45679999999999999999999999999999999999854443 3432 4577
Q ss_pred HHHHHHhcc
Q 029765 176 ERLKKFGQD 184 (188)
Q Consensus 176 ~~L~~~i~~ 184 (188)
++|.+++.+
T Consensus 879 ~~L~~~L~~ 887 (895)
T PRK00275 879 DAICEQLDA 887 (895)
T ss_pred HHHHHHHhc
Confidence 888877754
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.61 E-value=0.047 Score=35.62 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=45.8
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
|.|.|.. ++++|.+++.+|.++|+.|.++.+.+.++.....|++.-.++. . ....-.++|++.+
T Consensus 3 l~i~~~d-~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~l~~~l 66 (70)
T cd04873 3 VEVYAPD-RPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGR--P-LDPERIARLEEAL 66 (70)
T ss_pred EEEEeCC-CCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCC--c-CCHHHHHHHHHHH
Confidence 5566655 4568999999999999999999998887777788888755443 2 2234444455444
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.52 E-value=0.037 Score=53.66 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=63.8
Q ss_pred CcEEEEEE-CCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 102 PQIEIHEM-GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 102 ~~V~V~~~-g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
|.|.+... .+...|.|.|.. ++|+|.+|..+|..+|++|++|++.+.+|.++-+|.+.-.++. ....+.+.+.|.+
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~D-rpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~--~~~~~~l~~~L~~ 664 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPD-RRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGS--PPDAALLRQDLRR 664 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecC-CccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC--cchHHHHHHHHHH
Confidence 34444322 466778877764 5679999999999999999999999989999999999854443 3556889999999
Q ss_pred HhccC
Q 029765 181 FGQDG 185 (188)
Q Consensus 181 ~i~~~ 185 (188)
++.|.
T Consensus 665 ~L~~~ 669 (774)
T PRK03381 665 ALDGD 669 (774)
T ss_pred HHcCC
Confidence 98875
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.44 E-value=0.044 Score=37.44 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=52.3
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+.|.+.++. ++|++..+..+|-++|.++..++.++.++.+...+.+.+. . .+.++|...|.++..
T Consensus 3 ~vItv~G~D-rpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--~---~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 3 LVITVVGPD-RPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--E---DSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--H---HHHHHHHHHHHHHHH
T ss_pred EEEEEEecC-CCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--c---ccHHHHHHHHHHHHH
Confidence 567777765 5579999999999999999999999999999988888876 2 267888888887743
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.41 E-value=0.041 Score=35.51 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=45.3
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.|.+.|.. ++|.|.++..+|-++|+.|.++.....++...+.+.+...+. .....+.+.|+++.
T Consensus 2 ~v~v~~~d-rpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPD-RPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE----EDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEET-STTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG----HGHHHHHHHHHHHT
T ss_pred EEEEEcCC-CCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC----CCHHHHHHHHHccc
Confidence 46667764 457999999999999999999999988762222222222222 46788888888763
No 28
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.17 E-value=0.0035 Score=48.96 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=47.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v 63 (188)
++..||..||+|=..+|+.|..||..+|..+ .||.|.-.+|.-|.-||..|-+-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlP-sdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLP-SDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCC-ccccccccchhhcccCCchhhhcc
Confidence 6778999999999999999999999999665 577888777999999998876543
No 29
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=96.12 E-value=0.0034 Score=53.11 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=50.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v 63 (188)
...|..-|..||+|--.+|+.|..||.++|......|.++..+|.-|-+||..|++-.
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 3457778899999999999999999999998777778888888999999999988643
No 30
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.08 E-value=0.054 Score=37.00 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=46.7
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
+.|+|.+.. ++|+|.+|..++-+.|+.+.++++... ++.+...|.+++.+. .....+.++|++
T Consensus 7 ~~l~i~~~d-r~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~----~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAED-RPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL----EHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE---TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH----HHHHHHHHHHCT
T ss_pred EEEEEEEEc-CCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH----HHHHHHHHHHHC
Confidence 456666654 456999999999999999999999874 678888999998655 245555555543
No 31
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.06 E-value=0.078 Score=52.44 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=60.3
Q ss_pred CcEEEEEEC--CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCcc----HHHHH
Q 029765 102 PQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDA----SARIS 175 (188)
Q Consensus 102 ~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~----~~~l~ 175 (188)
|.|.+.-.. ....|.|.+.. ++|+|.+|..+|.++|++|.+|.+.+.++++.-+|.+.-.++. .+. ...|.
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~D-rpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~--~i~~~~~~~~l~ 907 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRD-RPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGL--KITNEARQAAIR 907 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECC-cCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCC--cCCCHHHHHHHH
Confidence 344444322 24567777754 5679999999999999999999999999999999999754443 232 35688
Q ss_pred HHHHHHhccC
Q 029765 176 ERLKKFGQDG 185 (188)
Q Consensus 176 ~~L~~~i~~~ 185 (188)
+.|.+++.+.
T Consensus 908 ~~L~~~L~~~ 917 (931)
T PRK05092 908 RALLAALAEG 917 (931)
T ss_pred HHHHHHhcCc
Confidence 8888888654
No 32
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.03 E-value=0.13 Score=35.23 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=53.1
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+.|.+.|+.+ +|+...|.+.|-++|..++.++....++.++..+.+.+. . .+...|.+.|..+-.
T Consensus 2 ~iltv~g~Dr-~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~---~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDR-PGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W---DAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCC-ChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c---ccHHHHHHHHHHHHH
Confidence 4567778654 569999999999999999999999999999888887754 2 467889988887654
No 33
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.03 E-value=0.053 Score=53.41 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=54.5
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCcc---HHHHHHHHHHHhcc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDA---SARISERLKKFGQD 184 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~---~~~l~~~L~~~i~~ 184 (188)
--.|.|.+.. ++|+|.+|.++|.++|++|.+|.|+|.|+++.-+|.+.-.++. .++ ...|+++|..++.+
T Consensus 808 ~TvlEV~a~D-RpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~--~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 808 RSYMELIALD-QPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRR--ALNEELQQELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEeCC-chHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCC--cCCHHHHHHHHHHHHHHHhh
Confidence 4557777754 5679999999999999999999999999999999999755443 355 34566666666644
No 34
>PRK00194 hypothetical protein; Validated
Probab=96.00 E-value=0.06 Score=37.66 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=53.6
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+.|.+.|.. ++|++..+...|-++|++|++.+..+.++.+...+.+..... ..+.+.+.+.|.++-.
T Consensus 3 ~~~ltv~g~D-rpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~l~~l~~ 70 (90)
T PRK00194 3 KAIITVIGKD-KVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES---KKDFAELKEELEELGK 70 (90)
T ss_pred eEEEEEEcCC-CCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC---CCCHHHHHHHHHHHHH
Confidence 3567777865 457999999999999999999999888887777777776542 3577889888887643
No 35
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.96 E-value=0.096 Score=51.54 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=56.7
Q ss_pred CcEEEEEEC--CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCcc---HHHHHH
Q 029765 102 PQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDA---SARISE 176 (188)
Q Consensus 102 ~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~---~~~l~~ 176 (188)
|.|.+.... +-..|.|.+. +++|+|.+|..+|.++|++|++|.|++.|+++.-+|.+.-.++. .++ ...|++
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~-DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~--~~~~~~~~~l~~ 860 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAP-DRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDR--PLSESARQALRD 860 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeC-CcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC--cCChHHHHHHHH
Confidence 345554332 2455666665 45679999999999999999999999999999999999754443 233 245666
Q ss_pred HHHHHhc
Q 029765 177 RLKKFGQ 183 (188)
Q Consensus 177 ~L~~~i~ 183 (188)
+|.+++.
T Consensus 861 ~L~~~l~ 867 (869)
T PRK04374 861 ALCACLD 867 (869)
T ss_pred HHHHHhc
Confidence 6666553
No 36
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.95 E-value=0.08 Score=51.81 Aligned_cols=72 Identities=13% Similarity=-0.004 Sum_probs=57.1
Q ss_pred CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCcc----HHHHHHHHHHHhccC
Q 029765 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKIGDSGSDHDA----SARISERLKKFGQDG 185 (188)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs-~~~~~~~~ti~~k~~~~~~~~~~----~~~l~~~L~~~i~~~ 185 (188)
+...|.|.+.. ++|+|..|..+|..+||+|++|.+. +.+|.++-+|.+.-.++. .++ ...|.+.|.+++.+.
T Consensus 667 ~~t~i~V~~~D-rpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~--~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 667 GGTEVFIYAPD-QPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGS--PPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CeEEEEEEeCC-CCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCC--CCCcHHHHHHHHHHHHHHHcCC
Confidence 45567777754 5679999999999999999999998 779999999999866554 343 345788888888774
No 37
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.89 E-value=0.17 Score=34.39 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=49.8
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE------DTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~------~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
|.+.|.. ++|++.+|.+.|.++|+++.+.+..+.+ +.+...+.+.+. . ..+...+.+.|..+-+.
T Consensus 2 l~v~g~D-~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p--~--~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGND-RPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP--A--GTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCC-CCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC--C--CCCHHHHHHHHHHHHHH
Confidence 4566765 4579999999999999999999998877 555555555543 2 46889999999887544
No 38
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.87 E-value=0.14 Score=50.34 Aligned_cols=83 Identities=8% Similarity=0.082 Sum_probs=61.2
Q ss_pred CCcEEEEEE--CCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCCCCccHH---HH
Q 029765 101 SPQIEIHEM--GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKIGDSGSDHDASA---RI 174 (188)
Q Consensus 101 ~~~V~V~~~--g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~-~~~~~~~ti~~k~~~~~~~~~~~~---~l 174 (188)
.|.|.+... ++...|.|.|.. ++|+|.+|..+|..+||+|++|.+.+ .+|.++-+|.+.-.++. .++.+ .|
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~D-rpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~--~~~~~~~~~l 740 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQD-QANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK--LLEFDRRRQL 740 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecC-CccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC--CCCHHHHHHH
Confidence 455555433 345667777764 56799999999999999999999976 89999999999755443 34443 56
Q ss_pred HHHHHHHhccCC
Q 029765 175 SERLKKFGQDGS 186 (188)
Q Consensus 175 ~~~L~~~i~~~~ 186 (188)
.+.|.+++.+..
T Consensus 741 ~~~L~~aL~~~~ 752 (854)
T PRK01759 741 EQALTKALNTNK 752 (854)
T ss_pred HHHHHHHHcCCC
Confidence 788888887653
No 39
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.81 E-value=0.076 Score=37.12 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=54.3
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
+.|.+.|+. ++|++..|.+.|-++|+++.+.+..+.++.+...+.+..... +.+.+.|.+.|..+-..
T Consensus 2 ~vl~i~g~D-~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~---~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKD-RVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISES---NLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCC-CCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCC---CCCHHHHHHHHHHHHHH
Confidence 356777875 457999999999999999999999888888777777776532 36789999988887543
No 40
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.71 E-value=0.098 Score=51.39 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=50.1
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCC-CCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGS-DHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~-~~~~~~~l~~~L~~~i 182 (188)
...|.|.+. +++|+|.+|..+|..+|++|++|.|++.|+.+.-+|.+. +... +.-....|.+.|.+++
T Consensus 786 ~T~i~V~a~-DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 786 YYILSVSAN-DRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred EEEEEEEeC-CcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHh
Confidence 456777775 456799999999999999999999999999999999994 2221 0112345566665554
No 41
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.65 E-value=0.16 Score=34.17 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=47.8
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
|.+.|.. ++|++.+|.+.|-++|+.+++.+..+..+...+.+.+++.-... ..+...|.+.|..+-..
T Consensus 2 i~v~g~D-~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPD-RPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF-DLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCC-CCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHHH
Confidence 4566765 45799999999999999999999886333233444555443320 15789999999887643
No 42
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.55 E-value=0.16 Score=50.06 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=60.2
Q ss_pred CCcEEEEEE--CCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCccH---HHH
Q 029765 101 SPQIEIHEM--GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKIGDSGSDHDAS---ARI 174 (188)
Q Consensus 101 ~~~V~V~~~--g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k~~~~~~~~~~~---~~l 174 (188)
.|.|.+... ++...|.|.|. +++|+|..|..+|..+||+|++|.|.+. +|.++-+|.+.-.++. .++. +.|
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~-DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~--~~~~~~~~~I 764 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSP-DRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS--PLSQDRHQVI 764 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEec-CCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC--CCCHHHHHHH
Confidence 455555443 34667777765 4567999999999999999999998765 5699999998755543 3443 347
Q ss_pred HHHHHHHhccC
Q 029765 175 SERLKKFGQDG 185 (188)
Q Consensus 175 ~~~L~~~i~~~ 185 (188)
.+.|.+++.+.
T Consensus 765 ~~~L~~aL~~~ 775 (884)
T PRK05007 765 RKALEQALTQS 775 (884)
T ss_pred HHHHHHHHcCC
Confidence 88888888665
No 43
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.55 E-value=0.15 Score=49.54 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=51.7
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
...|.|.+. +++|+|.+|..+|..+|++|++|.+++.|+.+.-+|.+.-.++. .++.. .+.|++.+
T Consensus 707 ~t~i~V~a~-DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~--~~~~~--~~~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAA-DRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG--PLADA--RAAVEQAV 772 (774)
T ss_pred eEEEEEEeC-CchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCC--cCchH--HHHHHHHh
Confidence 356777665 45679999999999999999999999999999999999855554 35433 56666554
No 44
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=95.46 E-value=0.029 Score=47.26 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=50.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v 63 (188)
+|..-|..||+|-..+|..|..||..+|......|.|.-++|.-|-.||--|-..+
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 46677899999999999999999999999998899999999999999998887655
No 45
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.26 E-value=0.017 Score=52.77 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CChhhhHHHHHHHHHHHHHHHHHH
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEA-TSLPDQLDEATKYIKRLQTNLERM 66 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k-~s~~~~l~~ai~YI~~Lq~~v~~L 66 (188)
-+|...|+.||-|-..||+.|.+|--+.-..-|.+| .++..||-.|+.-|-.|+++|.+-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 357889999999999999999999876532222221 333444999999999999999774
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.20 E-value=0.16 Score=49.98 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=50.6
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccH---HHHHHHHHHH
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDAS---ARISERLKKF 181 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~---~~l~~~L~~~ 181 (188)
--.|.|.+.. ++|+|..|.++|.++|++|.+|.|+|.|+++.-+|.+.-.++. .++. ..|+++|.++
T Consensus 783 ~T~iev~a~D-rpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~--~l~~~~~~~l~~~L~~~ 852 (854)
T PRK01759 783 QTEMELFALD-RAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQ--ALDEEERKALKSRLLSN 852 (854)
T ss_pred eEEEEEEeCC-chHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCC--cCChHHHHHHHHHHHHH
Confidence 3557777754 5679999999999999999999999999999999999754443 3443 3444444443
No 47
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.09 E-value=0.29 Score=32.52 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=45.6
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+.... ++|.|.+|+.++.+.|..|.+.+.... ++.....|.+++.+.. ....+.++|+++
T Consensus 2 l~v~~~d-~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~----~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPN-RPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEE----HAETIVAAVRAL 64 (74)
T ss_pred EEEEeCC-CCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHH----HHHHHHHHHhcC
Confidence 3444544 446899999999999999999998776 4677777888876553 556666666653
No 48
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.01 E-value=0.25 Score=48.60 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=59.9
Q ss_pred CcEEEEEE--CCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCC-CCccHHHHHHH
Q 029765 102 PQIEIHEM--GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKIGDSGS-DHDASARISER 177 (188)
Q Consensus 102 ~~V~V~~~--g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs-~~~~~~~~ti~~k~~~~~~-~~~~~~~l~~~ 177 (188)
|-|-++.. .+...|.|.|.. ++++|..+.-+|..+||+|++|.+. +.+|.++-+|.+.-.++.. ..--.+.|.+.
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d-~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~ 744 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPD-QPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHE 744 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecC-CCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHH
Confidence 33445443 356778877764 5679999999999999999999995 6789999999997433321 00125567888
Q ss_pred HHHHhccCC
Q 029765 178 LKKFGQDGS 186 (188)
Q Consensus 178 L~~~i~~~~ 186 (188)
|.+++.|..
T Consensus 745 l~~~l~~~~ 753 (856)
T PRK03059 745 LAERLAEQA 753 (856)
T ss_pred HHHHHcCCC
Confidence 888887753
No 49
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.86 E-value=0.28 Score=48.49 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=55.8
Q ss_pred CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEecCCCCCCc--c---HHHHHHHHHHHhcc
Q 029765 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASF-NVVEDTIFHTIHSKIGDSGSDHD--A---SARISERLKKFGQD 184 (188)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~v-s~~~~~~~~ti~~k~~~~~~~~~--~---~~~l~~~L~~~i~~ 184 (188)
+...|.|.|.. ++++|.++..+|..+|++|++|.+ ++.+|.++-+|.+.-.++. .+ + .+.|.+.|.+++.|
T Consensus 703 ~~t~V~V~~~D-rpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~--~~~~~~~r~~~i~~~L~~~L~~ 779 (895)
T PRK00275 703 GGTQIFIYAPD-QHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGE--PIGDNPARIEQIREGLTEALRN 779 (895)
T ss_pred CeEEEEEEeCC-CCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCC--CccchHHHHHHHHHHHHHHHcC
Confidence 56778777764 567999999999999999999998 5667899999999755443 22 2 23477888888876
Q ss_pred CC
Q 029765 185 GS 186 (188)
Q Consensus 185 ~~ 186 (188)
..
T Consensus 780 ~~ 781 (895)
T PRK00275 780 PD 781 (895)
T ss_pred CC
Confidence 53
No 50
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.77 E-value=0.6 Score=46.30 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=60.4
Q ss_pred CCcEEEEEEC--CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCC--CCccHHHHH
Q 029765 101 SPQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKIGDSGS--DHDASARIS 175 (188)
Q Consensus 101 ~~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~-~~~~~~~ti~~k~~~~~~--~~~~~~~l~ 175 (188)
.+.|.++... +...|.|.|.. ++|+|..|..+|..+|++|++|.+.+ .+|.++-+|.+.-.++.. +.-....|.
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~D-r~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAAD-HPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCC-CCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 3445555433 46778887764 56799999999999999999999976 688888889887544321 011356678
Q ss_pred HHHHHHhccC
Q 029765 176 ERLKKFGQDG 185 (188)
Q Consensus 176 ~~L~~~i~~~ 185 (188)
+.|.+++.|.
T Consensus 798 ~~L~~~l~~~ 807 (931)
T PRK05092 798 KAIEDALSGE 807 (931)
T ss_pred HHHHHHHcCC
Confidence 8888887654
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.76 E-value=0.45 Score=32.12 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=49.8
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
|.+.. .+++|++.++.++|-++|+++.+.+.++.++.+...+.+.+.. +.+.+.+.+.|..+-.
T Consensus 2 vtv~G-~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~----~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTG-PDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPD----SADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEc-CCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCC----CCCHHHHHHHHHHHHH
Confidence 34444 4566799999999999999999999888888766666666432 3578999999887654
No 52
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.63 E-value=0.38 Score=31.01 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=40.8
Q ss_pred EEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 117 LTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-----EDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 117 i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-----~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
+.+. .++|.|.+|+.+|.+.|++|.+...... ++.....|.+.+.+. .....+.+.|++
T Consensus 3 v~~~-d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~----~~l~~l~~~l~~ 66 (73)
T cd04886 3 VELP-DRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGA----EHIEEIIAALRE 66 (73)
T ss_pred EEeC-CCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCH----HHHHHHHHHHHH
Confidence 4454 3456899999999999999999987754 356666677776432 244556666554
No 53
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.60 E-value=0.34 Score=47.73 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=57.2
Q ss_pred CCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccC
Q 029765 110 GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDG 185 (188)
Q Consensus 110 g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~-~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~ 185 (188)
++...|.|.|.. ++++|.+|.-+|..+|++|++|.+.+ .+|.++-+|.+.-.++.. .-....|.+.|.+++.|.
T Consensus 688 ~~~~~v~v~~~d-~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~-~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 688 NDALEVFVYSPD-RDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA-DGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCeEEEEEEeCC-CccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC-hHHHHHHHHHHHHHHcCC
Confidence 356778877764 56799999999999999999999975 688999999997443321 123556888888888774
No 54
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.42 E-value=0.32 Score=47.65 Aligned_cols=67 Identities=13% Similarity=-0.059 Sum_probs=50.3
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
...|.|.|.. ++|+|.+|.++|.++|++|.+|.+.+.+++..-+|.+....+. .++. ...+.|++.+
T Consensus 779 ~t~~~v~~~D-rpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~--~~~~-~~~~~l~~~L 845 (850)
T TIGR01693 779 ATIMEVRALD-RPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL--KLTD-EEEQRLLEVL 845 (850)
T ss_pred eEEEEEEECC-ccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCC--CCCH-HHHHHHHHHH
Confidence 3556677654 5679999999999999999999999999999999999865543 3443 3334444443
No 55
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.27 E-value=0.36 Score=32.07 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=44.3
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+.+..+ ++.+.+|+.+|.++|.+|...+.... ++.....|.+.+.+.. .....+.++|+++
T Consensus 3 l~i~~~d~-~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~---~~l~~l~~~L~~i 66 (76)
T cd04888 3 LSLLLEHR-PGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN---GDIDELLEELREI 66 (76)
T ss_pred EEEEecCC-CchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH---HHHHHHHHHHhcC
Confidence 45555544 46899999999999999999987654 4566667777765441 2556777777654
No 56
>PRK04435 hypothetical protein; Provisional
Probab=94.08 E-value=0.49 Score=36.68 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=52.7
Q ss_pred ECCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 109 MGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 109 ~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~-~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.|..+.+.+....+ +|.|.+|+.+|.++|.+|.+.+.+. .+|....+|.+.+.+.. ...+.|.++|+++
T Consensus 66 ~~r~vtL~i~l~Dr-~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~---~~L~~Li~~L~~i 135 (147)
T PRK04435 66 KGKIITLSLLLEDR-SGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME---GDIDELLEKLRNL 135 (147)
T ss_pred CCcEEEEEEEEecC-CCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH---HHHHHHHHHHHcC
Confidence 45677788777654 4689999999999999999998764 46777788888876552 4677777777754
No 57
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.40 E-value=0.97 Score=30.28 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=41.5
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
++|.|.+++++|.++|+.+.+..+.+..+ ..-|.|.+.+.+.. +......+.+.|++.
T Consensus 9 ~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~~ 67 (75)
T cd04880 9 KPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKRV 67 (75)
T ss_pred cCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHHh
Confidence 45789999999999999999998887655 55677777776431 023445555666553
No 58
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.49 Score=46.06 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=53.3
Q ss_pred CcEEEEEEC--CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHH
Q 029765 102 PQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLK 179 (188)
Q Consensus 102 ~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~ 179 (188)
|.|++.-.. ....+++.+- .++|+|..+..+|..++|++++|.|+++|.++.-+|.+....+. .++ ..+++.|.
T Consensus 779 p~v~i~~t~~~~~t~lEv~al-DRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~--~l~-~~~~q~l~ 854 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRAL-DRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQ--ALN-AELRQSLL 854 (867)
T ss_pred CceeeccccCCCceEEEEEeC-CcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccc--cCC-HHHHHHHH
Confidence 444443322 2455676664 45679999999999999999999999999999999988866554 443 33444443
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.33 E-value=0.72 Score=28.57 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=40.5
Q ss_pred EEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
++.+..+ ++.+..+++.|.++++++.+......+ +.....|.+++... .+...+.+.|++
T Consensus 2 ~v~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 62 (71)
T cd04876 2 RVEAIDR-PGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDL----EHLARIMRKLRQ 62 (71)
T ss_pred EEEEecc-CcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCH----HHHHHHHHHHhC
Confidence 3445544 458999999999999999999887665 54555666664432 345555555553
No 60
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.39 E-value=0.9 Score=29.67 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=42.5
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-C-CeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-E-DTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~-~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
+|++.+..+ +|.+.+++..|.+.|..+.+.+.... + +.....+.....+. -....+.++|++
T Consensus 2 yl~i~~~d~-~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDK-PGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSE----AALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCC-CcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCH----HHHHHHHHHHHc
Confidence 567766544 46899999999999999999987654 3 55555565554332 345556666664
No 61
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=92.36 E-value=0.81 Score=30.72 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=39.6
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
+.|.+..+ .|+|.+|+.++.+++..+.+.++.+. +.+ .|.+++.+. ...+.+.++|++
T Consensus 3 l~I~~~dr-~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i--~l~i~v~~~----~~L~~li~~L~~ 60 (74)
T cd04877 3 LEITCEDR-LGITQEVLDLLVEHNIDLRGIEIDPK-GRI--YLNFPTIEF----EKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEcc-chHHHHHHHHHHHCCCceEEEEEecC-CeE--EEEeEecCH----HHHHHHHHHHhC
Confidence 55666544 46999999999999999999999765 443 344444333 244566666654
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=91.70 E-value=2.9 Score=28.31 Aligned_cols=42 Identities=5% Similarity=0.030 Sum_probs=34.4
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCC
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKIGDS 164 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k~~~~ 164 (188)
++|.|.++++.|.++|+.+.+....+.. +...|.|.+.+...
T Consensus 11 ~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 11 KPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred CCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 4568999999999999999999877664 46668888887643
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.67 E-value=2.1 Score=27.33 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=40.6
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
+.+.... .+|.|.+|+..|.++++.+.+.+.... ++...+.|.+...+ . ....+..+|++
T Consensus 3 l~i~~~d-~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~l~~~l~~ 64 (72)
T cd04878 3 LSVLVEN-EPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD-D----VIEQIVKQLNK 64 (72)
T ss_pred EEEEEcC-CCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH-H----HHHHHHHHHhC
Confidence 4444544 346899999999999999999988764 45666666666422 2 34555555554
No 64
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=90.81 E-value=2.3 Score=36.52 Aligned_cols=70 Identities=7% Similarity=-0.049 Sum_probs=52.6
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
.+.|.+.|.. ++|+...|.+.|-++|+++.+.+..+..+.-.|++.+.+.... +.+...|++.|.++-.+
T Consensus 7 ~~vitv~G~D-rpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~--~~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 7 TFVLTLSCPS-AAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE--GLDEDALRAGFAPIAAR 76 (286)
T ss_pred eEEEEEEeCC-CCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC--CCCHHHHHHHHHHHHHH
Confidence 3567778865 4579999999999999999999997544444555666665443 47899999999887543
No 65
>PRK08577 hypothetical protein; Provisional
Probab=90.61 E-value=3.8 Score=30.98 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=47.5
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+.|.+.+..+ +|.|.+|+.+|.+++.++.+.+..+. ++.....+.+.+.+.. ...+.+.+.|+++
T Consensus 56 ~~~I~V~~~Dr-~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~---~~l~~l~~~L~~l 123 (136)
T PRK08577 56 LVEIELVVEDR-PGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD---IDLEELEEELKKL 123 (136)
T ss_pred EEEEEEEEcCC-CCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch---hhHHHHHHHHHcC
Confidence 56788777654 46899999999999999999887665 3445556677766541 3557777777654
No 66
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.56 E-value=2.7 Score=28.28 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=48.8
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.|.|.|+.+- |+=.++..++-+.||.|....+++.|.=-+..|-+.-....+ .+.=+-++++|.++
T Consensus 2 vitvnCPDkt-GLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~-~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKT-GLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI-KVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCcc-CcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC-cccHHHHHHHHHhc
Confidence 3677887654 577899999999999999999999987555555554443332 46778888888764
No 67
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=90.41 E-value=3.3 Score=40.00 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=58.8
Q ss_pred CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccCC
Q 029765 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDGS 186 (188)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~~ 186 (188)
++..+.|......++.|+++.-+|--+++.|.+|++.+ +|.....|.+...-+. ..++..+.+.++..++|..
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~ 617 (693)
T PRK00227 545 EDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQ--DFDPQEFLQAYKSGVYSEL 617 (693)
T ss_pred cCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCC--CCChHHHHHHHHHhhcCCC
Confidence 33455555533445799999999999999999999999 8888888888876565 6899999999999988753
No 68
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.04 E-value=3.4 Score=35.52 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
.+.|.+.|.. ++|+...|.++|-++|+.+.+.+..+ .++.+.-.+.+.++.. ..+.+.|.+.|.++-++
T Consensus 6 ~~vitv~G~D-rpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~---~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPD-RPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL---IFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCC-CCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHHHHHH
Confidence 3567777765 45799999999999999999999998 7775444445554222 35688999988877543
No 69
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=89.80 E-value=2.6 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=27.2
Q ss_pred EEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC
Q 029765 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE 150 (188)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~ 150 (188)
.+.|... ++.+.+++.+|...++.+........+
T Consensus 2 ~i~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDR-PGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCC-CchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 4556543 468999999999999999999987654
No 70
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=89.70 E-value=1.5 Score=28.99 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=41.2
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+|.|.+|+.+|..-|+.+-+.+++. .++...++|.+... . -..+.|...|.|+++
T Consensus 3 ~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-~----~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 3 PGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-D----REIEQLVKQLEKLID 59 (63)
T ss_dssp TTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--C----CHHHHHHHHHHCSTT
T ss_pred cHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-c----hhHHHHHHHHhccCC
Confidence 4689999999999999999999988 55666677766632 2 366778888877654
No 71
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=89.45 E-value=3.8 Score=25.88 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=40.3
Q ss_pred EEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 117 LTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 117 i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.... ++|.+.+|+.+|.+.|+.+.+..+...+ +....+|.++ +. ....+.+.|+++
T Consensus 4 v~~~d-~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~--~~-----~~~~l~~~l~~~ 62 (71)
T cd04879 4 IVHKD-VPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD--SP-----VPEEVLEELKAL 62 (71)
T ss_pred EEecC-CCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC--CC-----CCHHHHHHHHcC
Confidence 34444 3468999999999999999999987754 6666666662 21 345677777654
No 72
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.09 E-value=4.2 Score=25.93 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=38.3
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
+.+.+.. .+|.|.+++..|.++++.+.+.+....+ +....+|.+. +.. ....+.+.|++
T Consensus 3 l~i~~~d-~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~--~~~----~~~~~~~~L~~ 62 (72)
T cd04874 3 LSIIAED-KPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE--GVG----DIEELVEELRS 62 (72)
T ss_pred EEEEeCC-CCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe--ccc----cHHHHHHHHhC
Confidence 4555654 4468999999999999999998887653 4444444443 221 33455555554
No 73
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.08 E-value=0.37 Score=44.94 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHH
Q 029765 17 RNRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIK 57 (188)
Q Consensus 17 R~RR~~~n~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~YI~ 57 (188)
++-|+++|.-+..|.+|||.. +|.||.|+ |.=++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSV---LRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSV---LRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhh---hhhhHHHHH
Confidence 456899999999999999977 58899999 999999985
No 74
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=88.71 E-value=0.3 Score=38.27 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHH
Q 029765 15 IERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQ 60 (188)
Q Consensus 15 ~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq 60 (188)
.||+|-+++|+.|.-|++|+|..+...|.-+ ..|.-+-.||..|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~-ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGK-KTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccc-cccccCCCchhhHH
Confidence 5999999999999999999998765433332 22555666665543
No 75
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=88.54 E-value=0.49 Score=42.77 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHHH
Q 029765 13 KTIERNRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIKR 58 (188)
Q Consensus 13 ~~~ER~RR~~~n~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~YI~~ 58 (188)
+-+-|+||++-|.-|..|..|||-. +..||+|+ +.-+..|||-
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasi---iRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASI---IRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhh---hhHHHHHHHH
Confidence 3456999999999999999999965 35799999 9999999974
No 76
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.96 E-value=4.9 Score=25.49 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=38.2
Q ss_pred EEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+.+.. ++|.+.+++..|.++|+.+.+...... ++.....|.++ +. ....+.++|+++
T Consensus 3 ~i~~~d-~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~--~~-----~~~~~i~~l~~~ 62 (71)
T cd04903 3 IVVHKD-KPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD--QP-----IDEEVIEEIKKI 62 (71)
T ss_pred EEEeCC-CCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC--CC-----CCHHHHHHHHcC
Confidence 444443 446899999999999999999987652 34544445443 22 335666666653
No 77
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=87.70 E-value=3.9 Score=27.57 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=33.9
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecC
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKIGD 163 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~~-~~~ti~~k~~~ 163 (188)
.+|.|.++|..|...|+.+.+..+-+..+. .-|.|.+.+..
T Consensus 10 ~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 10 EVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 456899999999999999999999877653 45888888764
No 78
>PRK07334 threonine dehydratase; Provisional
Probab=87.44 E-value=4.5 Score=36.18 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=48.5
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-----EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-----~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.|.|.+..+ +++|.+|+.+|.+.++.|.+++.... ++.....|.+++.+- .....+..+|++.
T Consensus 327 v~l~I~~~dr-~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~----~~L~~vi~~Lr~~ 395 (403)
T PRK07334 327 ARLRVDIRDR-PGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA----AHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH----HHHHHHHHHHHHc
Confidence 7777777654 46999999999999999999998754 567667777777644 3556777777664
No 79
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=3.8 Score=40.19 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=57.6
Q ss_pred EEEEECCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCccHHHHH---HHHHH
Q 029765 105 EIHEMGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKIGDSGSDHDASARIS---ERLKK 180 (188)
Q Consensus 105 ~V~~~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~l~---~~L~~ 180 (188)
.++...++.+|.|.|+.. +.+|..+.-++...|++|+.|++- +-+|..+-||.+.--++. .++.++.. +.|.+
T Consensus 677 ~~r~~~~~teV~V~a~d~-p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~--~~~~dr~~~~~~~l~~ 753 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDR-PRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF--PVEEDRRAALRGELIE 753 (867)
T ss_pred eecccCCceEEEEEcCCC-ccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCC--ccchhHHHHHHHHHHH
Confidence 444555788899988654 469999999999999999999995 678889999988744443 35544443 45555
Q ss_pred HhccCC
Q 029765 181 FGQDGS 186 (188)
Q Consensus 181 ~i~~~~ 186 (188)
++.++.
T Consensus 754 ~l~s~~ 759 (867)
T COG2844 754 ALLSGK 759 (867)
T ss_pred HHhcCC
Confidence 555544
No 80
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.92 E-value=5.4 Score=28.31 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=42.2
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+.... ++|.|.++|..|...|+.+.+..+-+..+ .--|.|.+.+.... .-....+-+.|++.
T Consensus 17 lif~l~~-~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~--~~~~~~~l~~L~~~ 81 (90)
T cd04931 17 LIFSLKE-EVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKS--APALDPIIKSLRND 81 (90)
T ss_pred EEEEcCC-CCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCC--CHHHHHHHHHHHHH
Confidence 4334443 45689999999999999999999987654 34578777775431 12333444444443
No 81
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.90 E-value=3.7 Score=27.09 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=36.4
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVV---EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~---~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+|.|.+++..|.++|..|++...... .+.-...+++.+. .. + ..+.|.+.|.+.
T Consensus 9 ~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e-~~--~-~~~~i~~~L~~~ 66 (72)
T cd04884 9 KPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPM-DR--S-KENELIEELKAK 66 (72)
T ss_pred CCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEe-cc--h-HHHHHHHHHhCc
Confidence 456899999999999999999987764 3344455665552 22 1 245555555443
No 82
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.54 E-value=0.52 Score=45.03 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHH
Q 029765 10 TDRKTIERNRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIK 57 (188)
Q Consensus 10 ~~h~~~ER~RR~~~n~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~YI~ 57 (188)
+.-.-+=|-||.+-|.-|+.|..+||-. +..||+|| +.-||.|++
T Consensus 48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSi---mRLtISyLR 96 (768)
T KOG3558|consen 48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASI---MRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHH---HHHHHHHHH
Confidence 3344566899999999999999999944 35799999 999999986
No 83
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=86.32 E-value=6 Score=33.92 Aligned_cols=62 Identities=6% Similarity=0.118 Sum_probs=46.7
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
|.+.|.. ++|+...|-..|-++|+.+++++-.... +.++-.+.+.+.+. .++...+.+.|..
T Consensus 3 itv~g~D-~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~---~~~~~~l~~~l~~ 66 (280)
T TIGR00655 3 LLVSCPD-QKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF---RLEESSLLAAFKS 66 (280)
T ss_pred EEEECCC-CCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHH
Confidence 5667765 4579999999999999999999988754 55554455554332 3678899988887
No 84
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.86 E-value=6.9 Score=26.65 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=33.9
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCC
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKIGDS 164 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~~ti~~k~~~~ 164 (188)
++|.|.++|..|+..|+.+.+..+-+..+ ..-|.|.+.+...
T Consensus 10 ~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 10 EVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 45679999999999999999999987644 4458888887544
No 85
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=85.36 E-value=6.4 Score=33.91 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=48.2
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN--VVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs--~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
+.|.+.|..+ +|+...|-..|-++|+.+++++-. +..+.++-.+........ .++.+.|.+.|.++-..
T Consensus 10 ~iitv~G~Dr-~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~--~~~~~~l~~~l~~l~~~ 80 (289)
T PRK13010 10 YVLTLACPSA-PGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE--AASVDTFRQEFQPVAEK 80 (289)
T ss_pred EEEEEECCCC-CCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC--CCCHHHHHHHHHHHHHH
Confidence 4677788654 569999999999999999999986 334444433333322222 47889999998876543
No 86
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=85.16 E-value=2 Score=30.73 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
+.|.++ +++++|....+..+|-++|+++++.+=+..+|.+-..+.+...+.. .+...+.+.|....
T Consensus 4 avITV~-GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~---~d~~~lr~~l~~~~ 69 (90)
T COG3830 4 AVITVI-GKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEV---VDFAALRDELAAEG 69 (90)
T ss_pred EEEEEE-cCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHh---ccHHHHHHHHHHHH
Confidence 345554 5667789999999999999999999999999988777777766553 68888888777554
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=83.67 E-value=7.3 Score=30.61 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=46.1
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+.+.-. +.+|.|.+|..+|...|+.+.+..++..+ +....+|++.. +. -....+...|.|+++
T Consensus 4 isI~ve-n~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d~----~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 4 LSVLVE-NEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-DD----KVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEc-CCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-CH----HHHHHHHHHHhcCcc
Confidence 344333 34578999999999999999999998765 56678888874 22 356777777777653
No 88
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=83.50 E-value=7.6 Score=30.67 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=45.2
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
|.+.-. +.+|.|.+|...|...|+.+.+..+...+ +....+|++..++ -..+.+...|.|+++
T Consensus 5 IsV~ve-N~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~-----~~i~qi~kQl~KLid 69 (161)
T PRK11895 5 LSVLVE-NEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE-----QVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEc-CCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH-----HHHHHHHHHHhcccc
Confidence 444333 34578999999999999999999988654 5667888887432 245677777776653
No 89
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=83.44 E-value=6 Score=25.63 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=37.9
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
..+|.+.++.+.|.++|+.+.+..+.. .++.....|.+.. . .+..+.+.|+++
T Consensus 8 d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~---~----~~~~~~~~l~~~ 62 (73)
T cd04902 8 DRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE---P----VPDEVLEELRAL 62 (73)
T ss_pred CCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC---C----CCHHHHHHHHcC
Confidence 345789999999999999998887765 4567777776653 2 134666666653
No 90
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=82.83 E-value=9.2 Score=29.52 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+.+.-..+. |.|+++|+++-+.++.|++.+=+ +.+|+.-.|+...+... ..+.+.+.++|+++
T Consensus 73 ~TL~l~ledr~-G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm---~~~V~~ii~kl~k~ 138 (150)
T COG4492 73 ITLSLSLEDRV-GILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM---EKDVDKIIEKLRKV 138 (150)
T ss_pred EEEEEEEhhhh-hhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh---hhhHHHHHHHHhcc
Confidence 34444433333 68999999999999999999875 88999988888887643 47889999999875
No 91
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=82.46 E-value=14 Score=25.54 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=41.6
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+|.|.+++.+|..-|+.|-+.++... ++....+|.+. +. -..+.|...|.|+++
T Consensus 13 ~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~~----~~i~ql~kQL~KL~d 69 (76)
T PRK11152 13 RPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--SE----RPIDLLSSQLNKLVD 69 (76)
T ss_pred CccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--CC----chHHHHHHHHhcCcC
Confidence 457899999999999999999999874 45555666663 33 366778877777653
No 92
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.63 E-value=13 Score=24.07 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=40.2
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+.+..... ++.|.++++.|.++|+.+.+...... ++.....|++... +.+.+.+.|++.
T Consensus 3 ~~~v~~~d~-pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~-------~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDR-PGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM-------NPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC-------CHHHHHHHHHHC
Confidence 344444443 46899999999999999998876543 4566667776542 234666666653
No 93
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=79.87 E-value=15 Score=38.74 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=50.1
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee---C--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV---E--DTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~---~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.++|..... +..|++++-+|+++||.|+...-..+ + ...+|.|.+....+. .++...+.+.+.+++
T Consensus 489 ~~~lkiy~~~~-~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~--~~~~~~~~~~~~~a~ 561 (1528)
T PF05088_consen 489 RLRLKIYHPGE-PLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGD--ALDLDDIRERFEEAF 561 (1528)
T ss_pred eEEEEEEcCCC-CcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCc--cccHHHHHHHHHHHH
Confidence 57788875443 45899999999999999999875432 2 255789999887765 467777777766554
No 94
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=79.54 E-value=12 Score=23.16 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=30.6
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEE
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSK 160 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k 160 (188)
++|.|.+++..|.+.|+.|.+..+...+ +..+..|.+.
T Consensus 8 ~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 8 KPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 4468999999999999999988887655 6666666665
No 95
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.51 E-value=11 Score=27.96 Aligned_cols=42 Identities=2% Similarity=-0.165 Sum_probs=33.7
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCC
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKIGDS 164 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~~-~~~ti~~k~~~~ 164 (188)
.+|.|.++|..|..+|+.+.+..+-+..+. .-|.|.+.+...
T Consensus 51 ~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 51 GFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 456899999999999999999999887443 347877777544
No 96
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=77.94 E-value=3 Score=26.91 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
.++|++.+++..|.+.|..+...+....++.....|.+... ....+.++|++
T Consensus 8 d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-------~l~~li~~l~~ 59 (69)
T cd04901 8 NVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-------VSEELLEALRA 59 (69)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-------CCHHHHHHHHc
Confidence 45579999999999999999887665555666666655432 33566666665
No 97
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=77.69 E-value=16 Score=23.56 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=31.7
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKI 161 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~ 161 (188)
|.|..+. .+|.|.+|+++|.+.|+.|.+.-+...++. ..+++..
T Consensus 4 i~v~v~d-~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 4 LSVFLEN-KPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEcC-CCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 3343333 456899999999999999999988766663 4555554
No 98
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=77.54 E-value=18 Score=24.93 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=43.6
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
|.+.-. +.+|.|.++..+|..-|+.+-+-+++..+ +....||.+..+ . -..+.+...|.|+++
T Consensus 5 isi~v~-n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~-~----~~i~qi~kQL~KLid 69 (76)
T PRK06737 5 FSLVIH-NDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT-E----NEATLLVSQLKKLIN 69 (76)
T ss_pred EEEEEe-cCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC-H----HHHHHHHHHHhCCcC
Confidence 444443 34579999999999999999999988654 555667776522 2 355677777766653
No 99
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.61 E-value=11 Score=23.61 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=34.1
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
++|.|.+++.+|.++|+.|.+....... +...+.|.++ + .+++.+.|++
T Consensus 9 ~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve--~-------~~~~~~~L~~ 59 (65)
T cd04882 9 KPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE--D-------IEKAIEVLQE 59 (65)
T ss_pred CCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC--C-------HHHHHHHHHH
Confidence 4568999999999999999888765543 4555555553 2 3456666554
No 100
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=74.84 E-value=17 Score=35.50 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=47.3
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.|.|.+.. +.|+|.+|..++.+.++.|.++++... ++.+...|.+++.+- -....|..+|+++
T Consensus 667 v~I~I~~~D-r~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~----~~L~~l~~~L~~i 732 (743)
T PRK10872 667 LVVRVTAND-RSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL----QVLGRVLGKLNQV 732 (743)
T ss_pred EEEEEEEcC-CCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH----HHHHHHHHHHhcC
Confidence 355556544 457999999999999999999999765 466667788887655 2556666666654
No 101
>PRK11899 prephenate dehydratase; Provisional
Probab=72.47 E-value=23 Score=30.37 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=43.5
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~-~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.++|.|.++|.+|...|+......+-+..+. .-|.|.+.+.+. .+...+.+.|.++
T Consensus 203 ~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~----~~d~~v~~aL~~l 259 (279)
T PRK11899 203 NIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH----PEDRNVALALEEL 259 (279)
T ss_pred CCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC----CCCHHHHHHHHHH
Confidence 4567899999999999999999999988654 568888888654 3445666666655
No 102
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=71.86 E-value=13 Score=30.15 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=48.9
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.|.+.+. +++|++..|-++|-++|..++.++.+..+|.+-..+.+ .... .....|...|..+-
T Consensus 8 ~lviTviG~-DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv--s~~~---~~~~~le~~L~~l~ 72 (190)
T PRK11589 8 YLVITALGA-DRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL--SGSW---NAITLIESTLPLKG 72 (190)
T ss_pred EEEEEEEcC-CCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE--eCCh---hHHHHHHHHHHhhh
Confidence 355666654 45679999999999999999999999999966555555 3332 36678888776654
No 103
>PRK11898 prephenate dehydratase; Provisional
Probab=71.85 E-value=22 Score=30.42 Aligned_cols=47 Identities=4% Similarity=-0.038 Sum_probs=35.7
Q ss_pred EecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCC
Q 029765 118 TTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKIGDS 164 (188)
Q Consensus 118 ~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~~ti~~k~~~~ 164 (188)
....+.+|.|.++|.+|...|+.+.+..+-+..+ ..-|.|.+.+...
T Consensus 202 ~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 202 TLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 3333335789999999999999999999988654 3447777777543
No 104
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=71.81 E-value=21 Score=34.45 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=47.0
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.|.|.+.. ++|+|.+|+.++-+.+..|.++++... ++.+...|.+++.+- .....|..+|+++
T Consensus 611 v~I~I~~~d-r~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~----~~L~~ii~~L~~i 675 (683)
T TIGR00691 611 VDINIEAVD-RKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY----KHLLKIMLKIKTK 675 (683)
T ss_pred EEEEEEEec-CCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH----HHHHHHHHHHhCC
Confidence 456666654 446999999999999999999999776 467677788887655 2455566666543
No 105
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=71.72 E-value=21 Score=34.59 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=46.7
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.|.|.+..+ .|+|.+|+.++-+.++.|.++++...+ +.+...|.+++.+- -....|..+|+++
T Consensus 627 v~i~I~~~dr-~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~----~~L~~i~~~Lr~i 691 (702)
T PRK11092 627 AEIKVEMFNH-QGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR----VHLANIMRKIRVM 691 (702)
T ss_pred EEEEEEEeCC-CCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH----HHHHHHHHHHhCC
Confidence 4566666544 469999999999999999999987664 45566777887655 2556666666543
No 106
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=70.92 E-value=23 Score=23.95 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=33.5
Q ss_pred cEEEEEECCeEEEEEEecCCCc-----ChHHHHHHHHHhCCCeEEEEEEEee
Q 029765 103 QIEIHEMGSALEVVLTTGLDFQ-----FMFIETIRLLHEEGVEIVNASFNVV 149 (188)
Q Consensus 103 ~V~V~~~g~~v~I~i~c~~~~~-----~~l~~il~~Le~l~L~V~sa~vs~~ 149 (188)
.|.++..++.+.|.+.+..+.- ..+..+-+.|...|+.+.+.++...
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4566677889999998866511 2477889999999999998887643
No 107
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.67 E-value=25 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=26.7
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV 149 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~ 149 (188)
.+.+..+. ++|.|.+++..|.++|+.+.+......
T Consensus 3 ~~~v~~~d-~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPD-EPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCC-CCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 34555544 446899999999999999998876654
No 108
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=70.34 E-value=20 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=21.8
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEee
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVV 149 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~ 149 (188)
.++.+.+++++|.+.++.|...+.+..
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~ 39 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSES 39 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 345799999999999999987766543
No 109
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=66.58 E-value=52 Score=26.56 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=50.7
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee----CCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV----EDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~----~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+.|.+.- .+++|++.++.++|-++|+.|.+-+.-+. .+.-+|..++.+.-+. +.+...|++.|..+-+
T Consensus 96 ~~v~v~G-~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~--~~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 96 VWVQVEV-ADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA--SQDAANIEQAFKALCT 167 (190)
T ss_pred EEEEEEE-CCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC--CCCHHHHHHHHHHHHH
Confidence 4565554 45567999999999999999998888655 4555677777766554 5678999998887644
No 110
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=64.03 E-value=43 Score=23.63 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=43.1
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
|.+.-. +.+|.|.++..+|-..|+.+-+.+++... +....||.+...+. ...+.+...|.|++
T Consensus 5 isvlVe-N~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~----~~ieqI~kQL~Kli 69 (84)
T PRK13562 5 LKLQVA-DQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD----TSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEE-CCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH----HHHHHHHHHHhCCc
Confidence 444433 34578999999999999999998887654 45567777753333 24566666666654
No 111
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=63.13 E-value=50 Score=26.38 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=45.7
Q ss_pred EEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
|.+.-. +++|.|.+|...|-..|+.+.+.++.. ..+..-.||.+.. .. -..+.|.+.|.++++
T Consensus 5 isvlv~-n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--~~---~~ieqL~kQL~KLid 69 (174)
T CHL00100 5 LSVLVE-DESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--DD---RTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEe-CcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--CH---HHHHHHHHHHHHHhH
Confidence 444443 456799999999999999999999976 4455556666652 21 126888888888865
No 112
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=62.41 E-value=44 Score=29.96 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=43.1
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~-~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
..+|.|.++|..|-..|+......+-+..+. .-|.|.+.+.+. .+...+.+.|.++
T Consensus 306 ~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~----~~d~~~~~aL~~l 362 (386)
T PRK10622 306 QQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN----LRSAEMQKALKEL 362 (386)
T ss_pred CCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC----CCCHHHHHHHHHH
Confidence 4567899999999999999999999977665 458988888654 3445566666554
No 113
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.28 E-value=24 Score=24.45 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=43.8
Q ss_pred ecCCCcChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEecCCCCCCcc----HHHHHHHHHHHhcc
Q 029765 119 TGLDFQFMFIETIRLLHEEGVEIVNASFN--VVEDTIFHTIHSKIGDSGSDHDA----SARISERLKKFGQD 184 (188)
Q Consensus 119 c~~~~~~~l~~il~~Le~l~L~V~sa~vs--~~~~~~~~ti~~k~~~~~~~~~~----~~~l~~~L~~~i~~ 184 (188)
|++.+|-.|.++..||..++.-|-+|.|. ..+++---.......+..- -+. -..+.+++++.+.|
T Consensus 6 sGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~-~~~~~~~r~~i~drv~~~lmg 76 (77)
T cd04898 6 SGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDR-LKLGGRQRSKVVDRVTKTLMG 76 (77)
T ss_pred cCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCc-cccchHHHHHHHHHHHHHHhc
Confidence 66766767999999999999999999997 3455554333333444330 123 56677777776654
No 114
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=57.84 E-value=44 Score=20.88 Aligned_cols=34 Identities=12% Similarity=-0.030 Sum_probs=24.5
Q ss_pred EEEEecC--CCcChHHHHHHHHHhCCCeEEEEEEEe
Q 029765 115 VVLTTGL--DFQFMFIETIRLLHEEGVEIVNASFNV 148 (188)
Q Consensus 115 I~i~c~~--~~~~~l~~il~~Le~l~L~V~sa~vs~ 148 (188)
|.+.+.. ..++.+.+++++|.+.|+.|.-.+.+.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555431 234689999999999999997776544
No 115
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.00 E-value=51 Score=21.37 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=35.6
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
++|-|.++++++.+ |.+|+..+....+ +.....+.+++.+. -....+.+.|++
T Consensus 8 kPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~----~~~~~i~~~L~~ 61 (68)
T cd04885 8 RPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR----EDLAELKERLEA 61 (68)
T ss_pred CCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH----HHHHHHHHHHHH
Confidence 45679999999999 9999998886543 23334444555443 255666666665
No 116
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.31 E-value=24 Score=24.17 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 49 LDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 49 l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
+..||+-|.-||-.|++|+++...+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 78899999999999999998877654
No 117
>PRK14637 hypothetical protein; Provisional
Probab=55.77 E-value=90 Score=24.24 Aligned_cols=60 Identities=18% Similarity=0.030 Sum_probs=42.4
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.-|....+-.+++++|++++.+.+...++.....|.+-- ++.++--++..+.+.|-.+++
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~-~~gV~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYS-AGGVGLDDCARVHRILVPRLE 66 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCCCCHHHHHHHHHHHHHHhc
Confidence 335577778889999999999999988776555555542 333423377777887766664
No 118
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=54.50 E-value=3.7 Score=39.49 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=51.6
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRP--MEATSLPDQLDEATKYIKRLQTNLERMKERK 70 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~--~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~ 70 (188)
.++...|+.+|..||..++-.|..|-++.-+... ..|.+....+...+.||..++.+...+.++-
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 4778999999999999999999999999876643 2344545558999999999887776666543
No 119
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=54.24 E-value=1e+02 Score=25.76 Aligned_cols=66 Identities=6% Similarity=-0.099 Sum_probs=40.6
Q ss_pred eEEEEEEecCCCc-ChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHH
Q 029765 112 ALEVVLTTGLDFQ-FMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLK 179 (188)
Q Consensus 112 ~v~I~i~c~~~~~-~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~ 179 (188)
.+.+.++|..... .....+++.|++.++.+.+.++...+ +....+......... ....+.+..+|.
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~--~~~le~iv~~L~ 210 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADY--RKTRELIISRIG 210 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCc--hhhHHHHHHHHh
Confidence 4678888876543 24688889999999999999997653 333333333322211 235555555543
No 120
>PRK08198 threonine dehydratase; Provisional
Probab=52.79 E-value=1.2e+02 Score=26.93 Aligned_cols=64 Identities=8% Similarity=0.109 Sum_probs=44.0
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-----EDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-----~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
.+.+.+.-+. ++|.|.++++.+-+.|..|++.+.... .+....++.+++.+. -..+.|.+.|++
T Consensus 327 ~~~l~v~l~D-~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~----~~~~~l~~~L~~ 395 (404)
T PRK08198 327 YLKLRVRLPD-RPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGP----EHIEEILDALRD 395 (404)
T ss_pred EEEEEEEeCC-CCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCH----HHHHHHHHHHHH
Confidence 3455555443 456899999999999999999888642 356667777776433 244566666655
No 121
>PLN02317 arogenate dehydratase
Probab=51.16 E-value=94 Score=28.03 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=38.6
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCCe---------------EEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVEDT---------------IFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~~---------------~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
.+|.|.++|.+|...|+.+....+-+..+. .-|.|.+.+... +...++.+.|.+
T Consensus 293 ~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~----~~d~~~~~aL~~ 361 (382)
T PLN02317 293 GPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS----MADPRAQNALAH 361 (382)
T ss_pred CCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC----cCCHHHHHHHHH
Confidence 457899999999999999999998876444 457888777544 233444444443
No 122
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=51.00 E-value=88 Score=26.98 Aligned_cols=56 Identities=7% Similarity=0.078 Sum_probs=43.5
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~-~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+|.|.++|..|-..|++.....+-+..+. .-|.|.+.+.+.. +-..+.+.|.++
T Consensus 203 n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~----~~~~v~~AL~el 259 (279)
T COG0077 203 NKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHI----DDPLVKEALEEL 259 (279)
T ss_pred CCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCc----CcHhHHHHHHHH
Confidence 4557899999999999999999999887654 4588888876553 446677777665
No 123
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.14 E-value=39 Score=23.03 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 49 LDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 49 l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
+..||+-|..||.++++|+.+...+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999875544
No 124
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=48.63 E-value=94 Score=21.90 Aligned_cols=63 Identities=8% Similarity=0.154 Sum_probs=44.9
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
++.+.-+. +++.|-+||.+.+.-|+-|...+.+.. ++..-..|.+. ..+ ..+-|...|.|+.+
T Consensus 5 qldl~ar~-~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~--s~R----~~~lL~~QLeKl~D 69 (86)
T COG3978 5 QLDLSARF-NPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD--SDR----SVDLLTSQLEKLYD 69 (86)
T ss_pred EEeeeccC-ChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc--CCC----ChHHHHHHHHHHcc
Confidence 34444444 456899999999999999999999876 55555555554 343 55777778877754
No 125
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=48.21 E-value=1.5e+02 Score=25.94 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=43.4
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-----EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-----~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+.+.-+. ++|.|.++++.+.+.|.+|++...... .+....+|.+++.+. .....|.+.|++.
T Consensus 306 ~~l~v~l~D-~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~----~~~~~i~~~L~~~ 374 (380)
T TIGR01127 306 VRIETVLPD-RPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK----EHLDEILKILRDM 374 (380)
T ss_pred EEEEEEeCC-CCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH----HHHHHHHHHHHHc
Confidence 455554443 456899999999999999999876621 356666777776542 3445667766653
No 126
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.36 E-value=82 Score=27.71 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=31.4
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029765 41 EATSLPDQLDEATKYIKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 41 ~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~~ 75 (188)
.+.++..+|.++-+-.+.|+..+.+|.++..++.+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788889999999999999999999999877765
No 127
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=47.05 E-value=24 Score=27.50 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcC
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIV 34 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~Lrsll 34 (188)
.|++.+..||+||---...|.-||.+=
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788899999999999999999853
No 128
>PRK14638 hypothetical protein; Provisional
Probab=46.52 E-value=1e+02 Score=23.91 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 130 il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+-.+++.+|++++.+.+...++..+..+.+.-.++.++--++..+.+.|-.+++
T Consensus 14 ~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD 67 (150)
T PRK14638 14 AERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLD 67 (150)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhc
Confidence 334578999999999999877665555555533332423478888888888876
No 129
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.23 E-value=64 Score=19.29 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.0
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEE
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHS 159 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~ 159 (188)
..++.+.+++++|.+.|+.+...+.+.. ++....+|.+
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v 48 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTV 48 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEE
Confidence 3456899999999999999987766432 2333444544
No 130
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=45.47 E-value=1.5e+02 Score=25.62 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=45.6
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.+.+.|+.. +|+...|-..|-++|..+++++-.....+-.+-..+....+.. ..+.+.+.+.+..+.
T Consensus 7 ~~~LtvsCpd~-~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~-~~~~~~l~~~f~~~a 75 (287)
T COG0788 7 TFILTVSCPDQ-PGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG-PLDREALRAAFAPLA 75 (287)
T ss_pred ceEEEEecCCC-CCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC-cccHHHHHHHHHHHH
Confidence 34566677654 4689999999999999999998774332223333444333321 367788888777643
No 131
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=45.38 E-value=1.2e+02 Score=22.01 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=42.6
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
..|.+.... .+|.|.+|.-.|-.-|..+-+.+++..+ +....||.+. +. -..+.+...|.|++
T Consensus 9 ~tisvlv~N-~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~~----~~i~Qi~kQL~KLi 73 (96)
T PRK08178 9 VILELTVRN-HPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DD----QRLEQMISQIEKLE 73 (96)
T ss_pred EEEEEEEEC-CcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--Cc----hHHHHHHHHHhCCc
Confidence 345555543 4579999999999999888888887654 4455666654 22 25566666666654
No 132
>PRK06382 threonine dehydratase; Provisional
Probab=45.25 E-value=1.5e+02 Score=26.48 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=42.6
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE----ee-CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN----VV-EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs----~~-~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+.+.-. +.+|.|.++++.|.+++.+|++.... .. .+....+|.++..+. .....|.+.|++.
T Consensus 331 ~rl~v~v~-D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~----~~~~~v~~~L~~~ 399 (406)
T PRK06382 331 VRIECNIP-DRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ----DHLDRILNALREM 399 (406)
T ss_pred EEEEEEcC-CCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH----HHHHHHHHHHHHC
Confidence 44444333 34568999999999999999988764 22 345667777776533 2334666666653
No 133
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=45.24 E-value=27 Score=20.07 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029765 16 ERNRRNQMKALYSTLNS 32 (188)
Q Consensus 16 ER~RR~~~n~~~~~Lrs 32 (188)
=|+||.+++..+..||+
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37899999999999885
No 134
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.62 E-value=78 Score=19.83 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=21.2
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEe
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNV 148 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~ 148 (188)
.++.+.+++++|.+.|++|.-.+.+.
T Consensus 14 ~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 14 MIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 34679999999999999997766544
No 135
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.07 E-value=80 Score=20.52 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 029765 17 RNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMK 67 (188)
Q Consensus 17 R~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~ 67 (188)
|.-|=.++..+..+..++-. .. .++|.+||+++-+.++...
T Consensus 17 R~~RHD~~NhLqvI~gllql-------g~---~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL-------GK---YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------T----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHHHHHHHH
Confidence 55566667778888888832 22 8999999999998887763
No 136
>PRK14639 hypothetical protein; Provisional
Probab=43.32 E-value=1.1e+02 Score=23.30 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=38.8
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 130 il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+-.+++++|++++.+.+...++..+..|.+.- ++.++--++..+.+.|-.+++
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~-~~gv~iddC~~vSr~is~~LD 55 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITK-EGGVNLDDCERLSELLSPIFD 55 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeC-CCCCCHHHHHHHHHHHHHHhc
Confidence 34578899999999999988887766666653 333423377888888887776
No 137
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.40 E-value=55 Score=22.87 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 49 LDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 49 l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
+..||+-|.-||-+|++|+++...+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998876664
No 138
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=42.30 E-value=77 Score=19.09 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.2
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEEe
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFNV 148 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs~ 148 (188)
++.+.+++++|.+.++.|...+.+.
T Consensus 14 ~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 14 PGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred ccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4579999999999999998887654
No 139
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=41.73 E-value=1.1e+02 Score=28.20 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=33.3
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCC
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKIGDS 164 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~~ti~~k~~~~ 164 (188)
.+|.|.++|++|...|+.+.+..+-+..+ ..-|.|.+.+.+.
T Consensus 26 ~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~ 68 (436)
T TIGR01268 26 EAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA 68 (436)
T ss_pred CCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC
Confidence 45689999999999999999999987543 3457788877543
No 140
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=41.25 E-value=90 Score=19.58 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=25.6
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEE
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSK 160 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~~ti~~k 160 (188)
..++.+.+++++|.+.|+.|.....+...+ ....+|.+.
T Consensus 11 ~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 11 DKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 345689999999999999997554432222 334455544
No 141
>smart00338 BRLZ basic region leucin zipper.
Probab=39.80 E-value=46 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029765 52 ATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 52 ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
--.|+..|+.+++.|+.+...|.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888887776664
No 142
>PF14992 TMCO5: TMCO5 family
Probab=39.07 E-value=52 Score=28.38 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=26.1
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 43 TSLPDQLDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 43 ~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
.++..+..+++.||+.||+.++.++.+++.+
T Consensus 140 ~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 140 QQVHQLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555668899999999999999999888765
No 143
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=39.04 E-value=2.6e+02 Score=28.50 Aligned_cols=78 Identities=9% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCcEEEEEEC-CeEEEEEEe---cC-CCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCccHHHH
Q 029765 101 SPQIEIHEMG-SALEVVLTT---GL-DFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKIGDSGSDHDASARI 174 (188)
Q Consensus 101 ~~~V~V~~~g-~~v~I~i~c---~~-~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~l 174 (188)
.|.++|...+ +.-.+++.- +. ...+.|+.+.+++.-+||.+..+=+-++ +|..+|+|-+.-.... ......+
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~--~~~~~~~ 293 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD--DNPDLSI 293 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC--CcccccH
Confidence 5567887766 333333332 11 2236899999999999999999999887 6778899999865443 1233566
Q ss_pred HHHHHH
Q 029765 175 SERLKK 180 (188)
Q Consensus 175 ~~~L~~ 180 (188)
.+++++
T Consensus 294 ~~~~~~ 299 (1002)
T PTZ00324 294 EDRASL 299 (1002)
T ss_pred HHHHHh
Confidence 777776
No 144
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.52 E-value=53 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029765 53 TKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
..||..|+.++..|+.+...|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888887766554
No 145
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=38.11 E-value=1.1e+02 Score=28.23 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=32.5
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEE-EEEEEEecC
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIF-HTIHSKIGD 163 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~-~ti~~k~~~ 163 (188)
..|.|.++|++|+..|+.+.+..+-+..+ ..- |.|.+.+..
T Consensus 41 ~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 41 VVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred CchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 45679999999999999999999987644 334 777777753
No 146
>PRK14645 hypothetical protein; Provisional
Probab=37.85 E-value=1.9e+02 Score=22.47 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEec-CCCCCCccHHHHHHHHHHHhcc
Q 029765 129 ETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIG-DSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 129 ~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~-~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
-+-.+++++|++++.+.+...++..+..+.+.-. ++.++--++..+.+.|-.+++.
T Consensus 14 li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~ 70 (154)
T PRK14645 14 LAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDR 70 (154)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 3455678999999999999877655555655532 2233223778888888888763
No 147
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.08 E-value=1.4e+02 Score=20.61 Aligned_cols=47 Identities=11% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 22 QMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 22 ~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
.++.+|...|++|-..+-.++. +.+=-++|+.|+++++...+-...+
T Consensus 32 ~lk~Klq~ar~~i~~lpgi~~s-----~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELPGIDRS-----VEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHhCCCccCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776444433322 7788888888888887776554444
No 148
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=37.07 E-value=1e+02 Score=19.13 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHhCCCeEEEEEE
Q 029765 124 QFMFIETIRLLHEEGVEIVNASF 146 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~v 146 (188)
++...+|+++|++.|+.|.....
T Consensus 14 ~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 14 VGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cCHHHHHHHHHHHcCCeEEEEec
Confidence 46799999999999999998854
No 149
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.61 E-value=1.3e+02 Score=20.14 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.6
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEE
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASF 146 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~v 146 (188)
.++.+.+|+.+|.++|+.|-....
T Consensus 14 ~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 14 AQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CcCHHHHHHHHHHHcCCcEEEEee
Confidence 356899999999999999988864
No 150
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.35 E-value=1e+02 Score=18.76 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEE
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFN 147 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs 147 (188)
++.+.+++++|.+.++.|...+.+
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 14 PGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEcc
Confidence 467999999999999999877643
No 151
>PRK14647 hypothetical protein; Provisional
Probab=36.26 E-value=2.1e+02 Score=22.30 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=36.7
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 130 il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+-.+++.+|++++.+.+...++..+..|.+.- ++.+.--++..+.+.|-.+++
T Consensus 14 i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~-~~gvslddC~~vSr~is~~LD 66 (159)
T PRK14647 14 AEQVLSSLGLELVELEYKREGREMVLRLFIDK-EGGVNLDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCeEEEEEEeC-CCCCCHHHHHHHHHHHHHHHc
Confidence 34557899999999999988775555555542 333312377788888888776
No 152
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=35.95 E-value=1e+02 Score=21.37 Aligned_cols=62 Identities=6% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHHHhC-CCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccCCCC
Q 029765 127 FIETIRLLHEE-GVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDGSAF 188 (188)
Q Consensus 127 l~~il~~Le~l-~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~~~~ 188 (188)
...+++.|++. +++|+..-=...-|.=.....|-+++..+.+.+++.+.+++.+.|..+..|
T Consensus 16 ~~~~~~~Le~~p~~~Vie~gCl~~Cg~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i~e~~~~ 78 (78)
T PF07293_consen 16 TDQVYEKLEKDPDIDVIEYGCLSYCGPCAKKPFALVNGEIVAAETAEELLEKIKEKIEENPMF 78 (78)
T ss_pred hHHHHHHHhcCCCccEEEcChhhhCcCCCCCccEEECCEEEecCCHHHHHHHHHHHHhcccCC
Confidence 55678888765 777754332211121112222334454444579999999999999988766
No 153
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=35.52 E-value=1.8e+02 Score=21.91 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 126 MFIETIRLLHEEGVEIVNASF-NVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 126 ~l~~il~~Le~l~L~V~sa~v-s~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
-+..++.+|.+.|++|....= .-++.--++.+|.... -++..+..+++.+++
T Consensus 69 EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~------gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 69 EVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGV------GDPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEec------CCHHHHHHHHHHHHh
Confidence 378899999999999988875 3455555666777632 367899999998875
No 154
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.90 E-value=1.2e+02 Score=19.33 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.5
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEEeeCCeE
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFNVVEDTI 153 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs~~~~~~ 153 (188)
++.+.+++++|.+.|+.|.-.+.++.+-.+
T Consensus 14 ~~~~~~i~~aL~~~~I~v~~i~~g~s~~si 43 (65)
T cd04918 14 SLILERAFHVLYTKGVNVQMISQGASKVNI 43 (65)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCccceE
Confidence 457999999999999999777766554433
No 155
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=34.81 E-value=1.8e+02 Score=22.18 Aligned_cols=41 Identities=12% Similarity=0.006 Sum_probs=30.8
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEE
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFH 155 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ 155 (188)
+|.+.-..++ |.|..++..|.+.|+.+-.-++.-.+++-+.
T Consensus 5 QISvFlENk~-GRL~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 5 QISVFLENKP-GRLASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEEEecCCc-chHHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 4666655444 5799999999999999988888766665443
No 156
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=34.38 E-value=1.9e+02 Score=28.25 Aligned_cols=64 Identities=11% Similarity=0.206 Sum_probs=44.7
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.|.|.-. .+.|+|.+|+++|-+.+..|.+++.... ++.....|..++.+- -....|..+|+++
T Consensus 628 ~~i~v~~~-~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~----~~L~~i~~~l~~~ 692 (701)
T COG0317 628 VDIEIRAY-DRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNL----NHLGRVLARLKQL 692 (701)
T ss_pred EEEEEEEc-cccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcH----HHHHHHHHHHhcC
Confidence 44554443 3457999999999999999999999876 444556677777654 2455666666543
No 157
>PRK13669 hypothetical protein; Provisional
Probab=34.18 E-value=1.1e+02 Score=21.35 Aligned_cols=62 Identities=5% Similarity=0.087 Sum_probs=38.7
Q ss_pred HHHHHHHHHhC-CCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccCCCC
Q 029765 127 FIETIRLLHEE-GVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDGSAF 188 (188)
Q Consensus 127 l~~il~~Le~l-~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~~~~ 188 (188)
...+++.|++. +++|+.--=...-|.=.....|=+++..+.+.+++.+.++|.+.|..|..|
T Consensus 16 ~~~~~~~Le~dP~~dVie~gCls~CG~C~~~~FAlVng~~V~a~t~eeL~~kI~~~i~e~~~~ 78 (78)
T PRK13669 16 SQAAFEKLEKDPNLDVLEYGCLGYCGICSEGLFALVNGEVVEGETPEELVENIYAHLEENPMF 78 (78)
T ss_pred HHHHHHHHHhCCCceEEEcchhhhCcCcccCceEEECCeEeecCCHHHHHHHHHHHHhhcCCC
Confidence 45557777655 888765432222222222333335555444679999999999999988765
No 158
>PF12289 Rotavirus_VP1: Rotavirus VP1 structural protein; InterPro: IPR022071 This domain family is found in viruses, and is approximately 50 amino acids in length. The family is found in association with PF02123 from PFAM. VP1 is a structural protein of the inner core layer of the rotavirus virion. It complexes with VP2 and Vp3 to form this layer. ; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2R7X_B 2R7S_A 2R7Q_A 2R7U_A 2R7R_A 2R7T_A 2R7V_A 2R7W_A 2R7O_A.
Probab=33.89 E-value=44 Score=20.98 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCC-CChhh
Q 029765 17 RNRRNQMKALYSTLNSIVPHQRPMEA-TSLPD 47 (188)
Q Consensus 17 R~RR~~~n~~~~~LrsllP~~~~~~k-~s~~~ 47 (188)
-+||.++..++..|...+ ..|+.+ .+|.|
T Consensus 21 ekrr~q~s~l~t~lq~p~--~fks~~~vtind 50 (52)
T PF12289_consen 21 EKRRAQLSILLTFLQKPT--TFKSSTVVTIND 50 (52)
T ss_dssp HHHHHHHHHHHHHHHS-----------EEHHH
T ss_pred HHHHHHHHHHHHHHhCCc--eecccceeeecc
Confidence 368888888888888743 445444 44433
No 159
>PRK14630 hypothetical protein; Provisional
Probab=33.02 E-value=2.3e+02 Score=21.77 Aligned_cols=54 Identities=9% Similarity=-0.028 Sum_probs=36.1
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 130 il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
+-.+++++|++++.+.+..-++..+..|.+.- ++.++=-+|..+.+.|-.++++
T Consensus 14 i~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~-~~gV~idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 14 IKNVTDRLGIEIIEINTFRNRNEGKIQIVLYK-KDSFGVDTLCDLHKMILLILEA 67 (143)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEEC-CCCCCHHHHHHHHHHHHHHhcc
Confidence 34457899999999999887665555555542 2333223777788888766654
No 160
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=32.57 E-value=1.8e+02 Score=21.93 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 132 RLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 132 ~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
..++++|++++.+.+...++..+..+.+-- ++.+.--++..+...+...++.
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRILRVFIDK-DGGVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS---HHHHHHHHHHHGGGTTT
T ss_pred cchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCCCCHHHHHHHHHHHHHHHcc
Confidence 467889999999999999887666666553 3323123556666666655543
No 161
>PRK14644 hypothetical protein; Provisional
Probab=32.21 E-value=1.6e+02 Score=22.50 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=36.6
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 132 RLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 132 ~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
.+++++|++++.+.+..-++..+..+... ... --++..+.+.|-.+++-
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Id--k~~--iddC~~vSr~is~~LD~ 54 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILN--SRD--LKDIEELTKEISDFIDN 54 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEEC--CCC--HHHHHHHHHHHHHHhcc
Confidence 46789999999999998877665555553 122 25889999999888763
No 162
>PRK14640 hypothetical protein; Provisional
Probab=32.09 E-value=2.4e+02 Score=21.79 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhcc
Q 029765 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQD 184 (188)
Q Consensus 130 il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~ 184 (188)
+-.+++++|++++...+...++..+..+.+-- +++++--++..+.++|-.+++.
T Consensus 12 i~p~~~~~G~el~dve~~~~~~~~~lrV~ID~-~~gv~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 12 LEAPVVALGFELWGIEFIRAGKHSTLRVYIDG-ENGVSVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCCCCHHHHHHHHHHHHHHhcc
Confidence 44467899999999999987765555555542 2334233788889999888873
No 163
>PRK14634 hypothetical protein; Provisional
Probab=31.47 E-value=2.4e+02 Score=21.94 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCC-CCCccHHHHHHHHHHHhc
Q 029765 132 RLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSG-SDHDASARISERLKKFGQ 183 (188)
Q Consensus 132 ~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~-~~~~~~~~l~~~L~~~i~ 183 (188)
.+++++|++++.+.+...++..+..+.+.-.++. ++-.++..+.+.|-.+++
T Consensus 15 ~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD 67 (155)
T PRK14634 15 ATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhc
Confidence 4567999999999998877655555555432231 312377778888887776
No 164
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.18 E-value=84 Score=16.75 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029765 56 IKRLQTNLERMKERKER 72 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~ 72 (188)
|..|+.+|.+|+.+...
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888877654
No 165
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.12 E-value=1.8e+02 Score=20.00 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 125 ~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
|.+.++|++||++|+.+-+.-++-.+ .++.+. +..+.+.....+..+|++.++
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSGID~----~Siii~--~~~~~~~~~~~i~~~i~~~~~ 68 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSGIDD----ISIIIR--DNQLTDEKEQKILAEIKEELH 68 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCCCcc----EEEEEE--ccccchhhHHHHHHHHHHhcC
Confidence 67999999999999998887666544 344443 222101134556666666544
No 166
>PRK14646 hypothetical protein; Provisional
Probab=31.07 E-value=2.5e+02 Score=21.77 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecC-CCCCCccHHHHHHHHHHHhc
Q 029765 129 ETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGD-SGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 129 ~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~-~~~~~~~~~~l~~~L~~~i~ 183 (188)
-+-.+++++|++++.+.+..-++..+..|.+.-.+ +.+.=-+|..+.+.|-.+++
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD 67 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhC
Confidence 44556789999999999998887666666665332 22312377888888888776
No 167
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=29.41 E-value=1.5e+02 Score=18.60 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 48 QLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 48 ~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
--..+-++|..|-.+++.+.++.+.++
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999988887765
No 168
>PRK14641 hypothetical protein; Provisional
Probab=28.53 E-value=2.6e+02 Score=22.25 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=34.3
Q ss_pred HhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 135 HEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 135 e~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+.+|++++.+.+...++..+..+.+. .++.++=-++..+.+.|-.+++
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID-~~~gv~lDdC~~vSr~Is~~LD 67 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLD-ADTGIRIDQCAFFSRRIRERLE 67 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEe-CCCCCCHHHHHHHHHHHHHHhC
Confidence 48999999999998777665566665 2333422377788888888776
No 169
>PRK06635 aspartate kinase; Reviewed
Probab=28.30 E-value=2.8e+02 Score=24.46 Aligned_cols=52 Identities=15% Similarity=-0.002 Sum_probs=35.2
Q ss_pred ECCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEE
Q 029765 109 MGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSK 160 (188)
Q Consensus 109 ~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k 160 (188)
..+-..|.+.+-...++.+.+++.+|.+.|+.|...+.+... +..-++|.+.
T Consensus 259 ~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~ 311 (404)
T PRK06635 259 DKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP 311 (404)
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc
Confidence 344566776653344578999999999999999987665433 2444555443
No 170
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=28.27 E-value=1.6e+02 Score=18.61 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.7
Q ss_pred CcChHHHHHHHHHhCCCeEEEE
Q 029765 123 FQFMFIETIRLLHEEGVEIVNA 144 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa 144 (188)
.++.+.+++++|.+.|+.|...
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~ 35 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQT 35 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEE
Confidence 4578999999999999999633
No 171
>PRK08526 threonine dehydratase; Provisional
Probab=28.06 E-value=4.4e+02 Score=23.60 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=43.4
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCC-----eEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED-----TIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~-----~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
+.+.+.-+. ++|.|.+++..+-+.+.+|+......... .....+.+++.+. -....|.+.|++.
T Consensus 327 ~~~~~~~~d-~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~l~~~ 395 (403)
T PRK08526 327 MKLHVTLVD-KPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK----EHQEEIRKILTEK 395 (403)
T ss_pred EEEEEEcCC-CCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH----HHHHHHHHHHHHC
Confidence 555554433 45689999999999999999999865433 3555666666544 3556666666653
No 172
>PRK06291 aspartate kinase; Provisional
Probab=27.58 E-value=3.2e+02 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=27.7
Q ss_pred eEEEEEEecC--CCcChHHHHHHHHHhCCCeEEEEEEEeeC
Q 029765 112 ALEVVLTTGL--DFQFMFIETIRLLHEEGVEIVNASFNVVE 150 (188)
Q Consensus 112 ~v~I~i~c~~--~~~~~l~~il~~Le~l~L~V~sa~vs~~~ 150 (188)
-..|.+.... ..++.+.+++++|.++|+.|...+-++.+
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse 361 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE 361 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 4566665432 33468999999999999999877654433
No 173
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=26.89 E-value=1.3e+02 Score=23.86 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCC
Q 029765 126 MFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSG 165 (188)
Q Consensus 126 ~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~ 165 (188)
.+..=++-|.++|+||-...+.+.++-....|..++.+.+
T Consensus 20 ri~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~Vvd~g 59 (165)
T PF13224_consen 20 RIEERIRRLNELGFDVGELEITTDDDGTRLRIQPKVVDAG 59 (165)
T ss_pred HHHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeEeCCc
Confidence 4566688899999999999999988877788888887664
No 174
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=26.87 E-value=3e+02 Score=21.24 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCeEEEEEEE-----------eeCCeEEEEEEEEec-CCCCCCccHHHHHHHH
Q 029765 127 FIETIRLLHEEGVEIVNASFN-----------VVEDTIFHTIHSKIG-DSGSDHDASARISERL 178 (188)
Q Consensus 127 l~~il~~Le~l~L~V~sa~vs-----------~~~~~~~~ti~~k~~-~~~~~~~~~~~l~~~L 178 (188)
=-.++..|++.|+.|+.+-.| ..++.+++.|.+|.. +..+ .++.+.+...+
T Consensus 10 EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~ki-Yl~~e~ve~L~ 72 (137)
T COG1591 10 ERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKI-YLDKEQVEKLV 72 (137)
T ss_pred HHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcE-EEcHHHHHHHH
Confidence 346888999999999998222 235667899999976 3444 56666665443
No 175
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=26.75 E-value=1.9e+02 Score=18.99 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCC
Q 029765 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDS 164 (188)
Q Consensus 125 ~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~ 164 (188)
..++.+.+.+ ...+.++++++...++..+=.+.+.+.+.
T Consensus 17 piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g~ 55 (76)
T PF09383_consen 17 PIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPGD 55 (76)
T ss_dssp CHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES-
T ss_pred hHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEECC
Confidence 4677776665 46788999999999999998888888644
No 176
>PRK14632 hypothetical protein; Provisional
Probab=26.55 E-value=3.2e+02 Score=21.64 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 132 RLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 132 ~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+++++|++++.+.+.. ++..+..|.+.- ++.++=-+|..+.+.|-.+++
T Consensus 16 pv~~~~G~eLvdve~~~-~~~~~lrV~ID~-~~GV~ldDC~~vSr~is~~LD 65 (172)
T PRK14632 16 PFLASLGLELWGIELSY-GGRTVVRLFVDG-PEGVTIDQCAEVSRHVGLALE 65 (172)
T ss_pred HHHHHCCCEEEEEEEEe-CCCcEEEEEEEC-CCCCCHHHHHHHHHHHHHHhc
Confidence 45679999999999885 554444554442 333322377888888887776
No 177
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=26.54 E-value=74 Score=18.75 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 029765 54 KYIKRLQTNLERM 66 (188)
Q Consensus 54 ~YI~~Lq~~v~~L 66 (188)
+||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5888888888765
No 178
>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon. It is found C-terminal to IPR006133 from INTERPRO and IPR006134 from INTERPRO. ; GO: 0003887 DNA-directed DNA polymerase activity, 0008270 zinc ion binding, 0006260 DNA replication, 0005634 nucleus
Probab=26.44 E-value=1.6e+02 Score=26.65 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccCCCC
Q 029765 127 FIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDGSAF 188 (188)
Q Consensus 127 l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~~~~ 188 (188)
|..++..|+.+|..|+.|+.+. |.++.+...+ -++....+-|.+.+..+..|
T Consensus 320 flqLl~Ef~rlG~~VVyA~~~r--------iil~T~K~~~--~~A~ay~~yi~~~i~~~~lF 371 (396)
T PF08490_consen 320 FLQLLAEFRRLGSKVVYADFNR--------IILCTGKTSL--ENAYAYVQYILKSIRSRELF 371 (396)
T ss_pred HHHHHHHHHHcCCEEEEEcCCE--------EEEECCCCCH--HHHHHHHHHHHHHHhccccc
Confidence 6778899999999999999653 3445544442 47778888888888887665
No 179
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=26.19 E-value=1.6e+02 Score=17.82 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=20.3
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEE
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFN 147 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs 147 (188)
++.+.+++.+|.+.++.|...+.+
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 14 PGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred ccHHHHHHHHHHHCCCcEEEEEcc
Confidence 467999999999999999877743
No 180
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.51 E-value=1.5e+02 Score=20.72 Aligned_cols=27 Identities=19% Similarity=0.371 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029765 49 LDEATKYIKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 49 l~~ai~YI~~Lq~~v~~L~~~~~~l~~ 75 (188)
|..+-+-|-.+|.++++|+.++.++..
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778899999999999988877653
No 181
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.44 E-value=1.8e+02 Score=19.14 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 49 LDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 49 l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
|.+|=...+.|+.+|+.|+.+.+++.
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998887764
No 182
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.36 E-value=1.7e+02 Score=17.99 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=20.9
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEe
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNV 148 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~ 148 (188)
.++.+.+++.+|.+.|++|.-.+.+.
T Consensus 14 ~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 14 TVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEecC
Confidence 34679999999999999997766543
No 183
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=25.22 E-value=2.1e+02 Score=18.82 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.4
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEE
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASF 146 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~v 146 (188)
.++.+.+++++|.+.|+.|.....
T Consensus 14 ~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 14 AHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred CccHHHHHHHHHHHcCCeEEEEEc
Confidence 346899999999999999977753
No 184
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=25.13 E-value=1.7e+02 Score=24.75 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Q 029765 20 RNQMKALYSTLNSIVPHQRPMEATSLPDQLDEAT------------------KYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 20 R~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai------------------~YI~~Lq~~v~~L~~~~~~l 73 (188)
|.-|..+|..|+..=.. . +|. .-...|.+.| .=|+.++.+|++|+.+..+.
T Consensus 6 ~qLI~~lf~RL~~ae~~-p-rD~-eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ-P-RDP-EAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC-C-CCH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56889999999986543 2 221 0011122222 12678899999999887554
No 185
>PRK14633 hypothetical protein; Provisional
Probab=24.86 E-value=3.3e+02 Score=21.00 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 129 ETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 129 ~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
-+-.+++++|++++...+..-++. +..+.+.- +++++=-+|..+.+.|-.+++
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~-~lrV~ID~-~~Gv~lddC~~vSr~i~~~LD 61 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKL-TIRIFIDH-ENGVSVDDCQIVSKEISAVFD 61 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCc-EEEEEEeC-CCCCCHHHHHHHHHHHHHHhc
Confidence 344567899999999999876653 33333332 233322377888888887776
No 186
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=24.31 E-value=2e+02 Score=21.95 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 029765 41 EATSLPDQLDEATKYIKRLQTNLERMKER 69 (188)
Q Consensus 41 ~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~ 69 (188)
.-.|..++|.+|++-+..+|.+-+.+...
T Consensus 54 ~~~sF~d~Lk~Al~~VN~~Q~~Ad~~~~~ 82 (127)
T PRK12729 54 VAESFSEAMKNALTSVNDLQVEADELTQK 82 (127)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999888654
No 187
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=24.28 E-value=2.4e+02 Score=19.24 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=43.0
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccCCC
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDGSA 187 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~~~ 187 (188)
.+.|.|+. . .+..|+..|.+.+-.|.+.... .++.+.....+-+ .....+...|+.+..|...
T Consensus 8 ~~~I~~p~--~-~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~-------~~~~gf~~~Lr~~T~G~a~ 70 (89)
T PF00679_consen 8 SVEISVPE--E-YLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPV-------RELFGFRSELRSLTSGRAS 70 (89)
T ss_dssp EEEEEEEG--G-GHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEG-------GGHTTHHHHHHHHTTTS-E
T ss_pred EEEEEECH--H-HHHHHHHHhcccccEEEechhh-hhhheeEEEEECh-------hhhhhHHHHhhccCCCEEE
Confidence 45666653 2 5999999999999999999888 4454444433332 2445788999999888643
No 188
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=23.62 E-value=2.1e+02 Score=18.39 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEEeeC
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFNVVE 150 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs~~~ 150 (188)
++.+.+++++|.+.|++|.-.+.+..+
T Consensus 15 ~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 15 PGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred chHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 357999999999999999777766543
No 189
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=23.58 E-value=3.4e+02 Score=20.78 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=37.5
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 130 il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
+-.+++.+|+++..+.+...++.....|.+.-. +.++--++..+.+.|-.+++
T Consensus 13 ~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~-~gv~iddc~~~Sr~is~~LD 65 (154)
T PRK00092 13 IEPVVEALGYELVDVEYVKEGRDSTLRIYIDKE-GGIDLDDCEEVSRQISAVLD 65 (154)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCcEEEEEEECC-CCCCHHHHHHHHHHHHHHhc
Confidence 345668899999999999877766666666532 32323477778888887776
No 190
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=23.42 E-value=1.8e+02 Score=17.53 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccC
Q 029765 126 MFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDG 185 (188)
Q Consensus 126 ~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~ 185 (188)
.+-.+-..|++.++.|.+...+.. +.+++.+.. . ..+.+.+.|..+..|.
T Consensus 7 ~~~~v~~~l~~~~~~i~~~~y~~~---V~~~v~v~~--~-----~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 7 QYGKVERLLEQNGIEIVDEDYTDD---VTLTVAVPE--E-----EVEEFKAQLTDLTSGR 56 (56)
T ss_dssp CHHHHHHHHHHTTTEEEEEEECTT---EEEEEEEEC--C-----CHHHHHHHHHHHTTT-
T ss_pred hHHHHHHHHHHCCCEEEcceecce---EEEEEEECH--H-----HHHHHHHHHHHHcCCC
Confidence 467788888999999999876543 556666653 2 4588899988887763
No 191
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=22.93 E-value=4.9e+02 Score=23.35 Aligned_cols=38 Identities=11% Similarity=-0.035 Sum_probs=27.7
Q ss_pred ECCeEEEEEEecCCC-cChHHHHHHHHHhCCCeEEEEEE
Q 029765 109 MGSALEVVLTTGLDF-QFMFIETIRLLHEEGVEIVNASF 146 (188)
Q Consensus 109 ~g~~v~I~i~c~~~~-~~~l~~il~~Le~l~L~V~sa~v 146 (188)
..+-..|.+....-. ++.+.+++++|.++|+.|....-
T Consensus 299 ~~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q 337 (441)
T TIGR00657 299 DRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQ 337 (441)
T ss_pred eCCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence 344556776543323 46899999999999999988763
No 192
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=22.64 E-value=2.3e+02 Score=18.40 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=20.9
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEE
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFN 147 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs 147 (188)
.++.+.+++++|.+.++.+.-.+.+
T Consensus 14 ~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 14 VPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEec
Confidence 3467999999999999999777665
No 193
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.60 E-value=2.4e+02 Score=18.75 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=31.6
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
++.+.+|+++|.+.|+.|-....+ .+. .+|.+.-.+.++++.....|.+.|++
T Consensus 15 ~g~~~~IF~~La~~~I~vDmI~~s--~~~--isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 15 VGFLADVFAPFKKHGVSVDLVSTS--ETN--VTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred cCHHHHHHHHHHHcCCcEEEEEeC--CCE--EEEEEeCcccccchHHHHHHHHHHHh
Confidence 468999999999999999888642 233 44554433321101123455555554
No 194
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=22.50 E-value=1e+02 Score=27.64 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 48 QLDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 48 ~l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
.+++.++|.+.|+++++.++..+...
T Consensus 140 r~n~l~eY~q~Laek~Ek~e~drkK~ 165 (449)
T KOG3896|consen 140 RLNELTEYMQRLAEKIEKAEKDRKKG 165 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhcc
Confidence 49999999999999999998766554
No 195
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=22.18 E-value=4.3e+02 Score=24.26 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=36.8
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+-|.++|+++++.+..+.+....... ...-|-+-+++.... -....+.+.|++-
T Consensus 47 ~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~---~~l~~~i~~lrq~ 102 (461)
T KOG3820|consen 47 VGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATR---GQLIQAIELLRQN 102 (461)
T ss_pred chHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccch---hhHHHHHHHHHHh
Confidence 457999999999999999999986552 233366666654443 2444555555544
No 196
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=22.11 E-value=2.6e+02 Score=18.86 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 125 ~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
+.-..||++|.++++.+++- .++.+++-|.+.... -...++...|.+..
T Consensus 16 g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~~~~-------k~~~r~~~~Le~~~ 64 (71)
T cd04910 16 GYDLEILELLQRFKVSIIAK--DTNANTITHYLAGSL-------KTIKRLTEDLENRF 64 (71)
T ss_pred hHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEEcCH-------HHHHHHHHHHHHhC
Confidence 46899999999999999998 555555555554432 24567777776654
No 197
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.85 E-value=8.4e+02 Score=24.67 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccC
Q 029765 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDG 185 (188)
Q Consensus 125 ~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~ 185 (188)
..|..+...|.+-.-+-+-+-++..++++.+...+- .+.. ..+.+..|...|-..+.|+
T Consensus 788 ~~Lr~~a~~lk~k~~~~vivl~~~~~~Kv~~~~~v~-~~~~-~~~~a~~lvk~la~~~gG~ 846 (879)
T COG0013 788 KELREIADDLKKKLGSAVIVLASVADGKVSLVVAVS-KDLT-DKVKAGELVKELAAIVGGK 846 (879)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEEecCCeEEEEEEec-hhhh-cccCHHHHHHHHHHhcCCC
Confidence 358888888876434444444555555665555554 3222 2579999999998887765
No 198
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=21.45 E-value=1.9e+02 Score=20.00 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHH-HHHHHH
Q 029765 22 QMKALYSTLNSIVPHQRPMEATSLPDQLDEATK-YIKRLQ 60 (188)
Q Consensus 22 ~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~-YI~~Lq 60 (188)
.|.+++..|.+-+ ...|+.. |.+||+ ||.+++
T Consensus 15 E~~eRL~~Ls~~t----grtkayy---vrEaIE~~ieemE 47 (80)
T COG4710 15 ELKERLDNLSKNT----GRTKAYY---VREAIEAYIEEME 47 (80)
T ss_pred HHHHHHHHHHHhc----CCchhHH---HHHHHHHHHHHHH
Confidence 4556666676622 2345666 999996 565554
No 199
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.36 E-value=2.1e+02 Score=17.52 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=24.1
Q ss_pred cChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 029765 124 QFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSK 160 (188)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k 160 (188)
++.+.+++++|.+.|+.|.-.+.+..+ .-.+|.+.
T Consensus 15 ~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~ 49 (66)
T cd04924 15 PGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVA 49 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEe
Confidence 467999999999999999666554322 33444444
No 200
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=21.27 E-value=2.6e+02 Score=18.57 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=20.4
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEE
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASF 146 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~v 146 (188)
.++.+.+|+++|.++|+.|-....
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe
Confidence 346899999999999999888864
No 201
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.25 E-value=1.6e+02 Score=18.43 Aligned_cols=18 Identities=11% Similarity=0.553 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029765 57 KRLQTNLERMKERKERLM 74 (188)
Q Consensus 57 ~~Lq~~v~~L~~~~~~l~ 74 (188)
..+-+++++|+++++.|.
T Consensus 22 edid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 22 EDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667778887777664
No 202
>PRK14643 hypothetical protein; Provisional
Probab=20.77 E-value=4.2e+02 Score=20.79 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=36.6
Q ss_pred HHHHHhCCCeEEEEEEEeeCCeEEEEEEEE-e--cCCCCCCccHHHHHHHHHHHhc
Q 029765 131 IRLLHEEGVEIVNASFNVVEDTIFHTIHSK-I--GDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 131 l~~Le~l~L~V~sa~vs~~~~~~~~ti~~k-~--~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
-.+++++|++++.+.+..-++..+..+.+. . .++.+.=-+|..+.+.|-.+++
T Consensus 16 ~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD 71 (164)
T PRK14643 16 NKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKID 71 (164)
T ss_pred HHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhC
Confidence 345789999999999998877666666652 1 1233312377778888887776
No 203
>PRK11191 RNase E inhibitor protein; Provisional
Probab=20.69 E-value=4e+02 Score=20.45 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 126 MFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 126 ~l~~il~~Le~l~L~V~sa~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+-+++..+.++|.+|..+.-. .-++...|.+.+-.... ++...|.....++
T Consensus 45 ~lek~a~~a~klGyeV~~~ee~e~edg~~~~~~~~~~e~~----l~~e~I~~~~~~L 97 (138)
T PRK11191 45 KLEKAAVEAFKLGYEVTDAEELELEDGDVIFCCDAVSEVA----LNAELIDAQVEQL 97 (138)
T ss_pred HHHHHHHHHHHcCCeeecccccccCCCCeEEEEEEEecCC----CCHHHHHHHHHHH
Confidence 5899999999999999776543 56677777776654333 5655554444433
No 204
>PRK08210 aspartate kinase I; Reviewed
Probab=20.52 E-value=5e+02 Score=22.96 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=28.6
Q ss_pred CCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEE
Q 029765 110 GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN 147 (188)
Q Consensus 110 g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs 147 (188)
.+-..|.+......++.+.+|+.+|.+.|+.|...+.+
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 44566777554433568999999999999999888555
No 205
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=20.27 E-value=4.9e+02 Score=21.39 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=42.2
Q ss_pred CeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
....+.+.|... ....+++.|.+.++.+.+.++...++....++.+++.. ..+..++.+.|++
T Consensus 143 ~~~~~~i~~~~~---~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~ 205 (215)
T PRK09977 143 KHYHLQLTLVNG---NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLHA----TTSIEDLYRLLKG 205 (215)
T ss_pred CcEEEEEEEccc---cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEECC----CCCHHHHHHHHhc
Confidence 345666667532 37889999999999999999875544333455555542 2567777777654
No 206
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.26 E-value=3.6e+02 Score=21.09 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=34.9
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 132 RLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 132 ~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+++.+|++++.+.+...+...+..|.+.=. +.++=-++.++.+.+-.+++
T Consensus 16 p~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~v~lddC~~vSr~is~~LD 66 (153)
T COG0779 16 PVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GGVTLDDCADVSRAISALLD 66 (153)
T ss_pred HhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CCCCHHHHHHHHHHHHHHhc
Confidence 3568999999999999988654444444322 33212377788888887776
No 207
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=20.24 E-value=3.3e+02 Score=23.48 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=24.1
Q ss_pred eCCeEEEEEEEE--ecCCCCCCccHHHHHHHHHHHhc
Q 029765 149 VEDTIFHTIHSK--IGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 149 ~~~~~~~ti~~k--~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.|-.++|.+++. +.+.++|.+.+..+.+.|+++-.
T Consensus 93 DgrKVVyaV~S~~g~~eNGv~~LSSsEVeELi~KAdE 129 (278)
T PF03285_consen 93 DGRKVVYAVHSGGGTSENGVHPLSSSEVEELIHKADE 129 (278)
T ss_pred ccceEEEEEecCCCcccCccccCcHHHHHHHHHhccc
Confidence 344677777544 22344568999999999998854
No 208
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.19 E-value=1.7e+02 Score=18.29 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 029765 56 IKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~~ 75 (188)
|..|++++..|+.+...|+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 44567777777766665553
Done!