Query 029765
Match_columns 188
No_of_seqs 128 out of 1104
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.7 9.2E-17 3.2E-21 112.0 9.4 67 8-74 1-67 (80)
2 1am9_A Srebp-1A, protein (ster 99.7 5E-17 1.7E-21 113.8 6.1 66 7-75 5-71 (82)
3 1nkp_A C-MYC, MYC proto-oncoge 99.6 5.4E-16 1.8E-20 110.0 8.0 67 8-74 6-72 (88)
4 1nkp_B MAX protein, MYC proto- 99.6 6.8E-16 2.3E-20 108.2 7.8 66 8-74 2-67 (83)
5 1hlo_A Protein (transcription 99.6 5.2E-16 1.8E-20 108.1 7.0 67 7-74 11-77 (80)
6 1a0a_A BHLH, protein (phosphat 99.6 2.7E-16 9.1E-21 104.9 2.3 56 8-63 2-61 (63)
7 4h10_B Circadian locomoter out 99.6 1.4E-15 4.9E-20 103.3 3.8 64 1-67 1-65 (71)
8 1an4_A Protein (upstream stimu 99.6 1.3E-15 4.3E-20 102.1 3.3 54 7-63 4-63 (65)
9 3u5v_A Protein MAX, transcript 99.6 9.8E-16 3.3E-20 105.7 2.6 61 7-67 4-65 (76)
10 2ql2_B Neurod1, neurogenic dif 99.5 8.9E-15 3.1E-19 96.5 6.4 58 7-64 1-58 (60)
11 4ati_A MITF, microphthalmia-as 99.5 2.1E-14 7.3E-19 106.9 7.7 64 6-69 25-89 (118)
12 1mdy_A Protein (MYOD BHLH doma 99.4 9.9E-14 3.4E-18 93.7 4.8 57 7-64 11-67 (68)
13 4h10_A ARYL hydrocarbon recept 99.4 2E-14 6.7E-19 98.4 0.9 53 6-61 7-63 (73)
14 2lfh_A DNA-binding protein inh 99.1 9.2E-12 3.2E-16 83.3 1.2 51 11-61 17-67 (68)
15 4f3l_A Mclock, circadian locom 99.0 3E-10 1E-14 98.1 4.2 56 4-62 8-64 (361)
16 4aya_A DNA-binding protein inh 98.8 1.5E-08 5E-13 72.4 6.6 51 15-65 32-82 (97)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 3.7E-09 1.2E-13 92.3 3.8 54 6-62 11-68 (387)
18 4ath_A MITF, microphthalmia-as 98.4 1.2E-06 4.1E-11 60.7 7.5 50 20-69 4-54 (83)
19 1zpv_A ACT domain protein; str 96.8 0.035 1.2E-06 37.5 11.4 67 112-183 5-71 (91)
20 2ko1_A CTR148A, GTP pyrophosph 95.1 0.11 3.9E-06 34.4 7.6 63 113-180 6-68 (88)
21 1u8s_A Glycine cleavage system 95.0 0.19 6.6E-06 38.8 9.6 65 112-182 6-70 (192)
22 2nyi_A Unknown protein; protei 94.9 0.12 3.9E-06 40.5 8.1 50 112-162 5-54 (195)
23 1u8s_A Glycine cleavage system 93.5 0.65 2.2E-05 35.7 9.8 67 112-183 93-167 (192)
24 2nyi_A Unknown protein; protei 93.2 0.49 1.7E-05 36.8 8.8 66 112-183 93-164 (195)
25 3p96_A Phosphoserine phosphata 88.0 2.1 7.1E-05 36.6 8.5 67 112-182 12-78 (415)
26 3o1l_A Formyltetrahydrofolate 87.3 5.6 0.00019 33.3 10.5 67 112-182 22-90 (302)
27 3n0v_A Formyltetrahydrofolate 86.8 5.7 0.0002 32.9 10.2 67 112-183 8-76 (286)
28 3obi_A Formyltetrahydrofolate 85.7 6.7 0.00023 32.5 10.1 67 112-182 6-74 (288)
29 3he4_B Synzip5; heterodimeric 84.5 1.6 5.6E-05 25.4 4.0 27 48-74 4-30 (46)
30 2f1f_A Acetolactate synthase i 83.8 3.2 0.00011 31.7 6.7 63 114-182 5-69 (164)
31 3lou_A Formyltetrahydrofolate 83.2 8.6 0.00029 31.9 9.7 69 112-182 10-80 (292)
32 2pc6_A Probable acetolactate s 83.1 2.9 0.0001 32.0 6.3 63 114-182 6-70 (165)
33 3nrb_A Formyltetrahydrofolate 79.2 12 0.00041 30.9 9.2 66 112-183 7-74 (287)
34 2fgc_A Acetolactate synthase, 77.3 8.2 0.00028 30.3 7.2 64 114-183 31-96 (193)
35 2jhe_A Transcription regulator 76.0 12 0.0004 27.2 7.6 60 114-181 2-61 (190)
36 3luy_A Probable chorismate mut 72.3 43 0.0015 28.2 11.2 55 123-181 218-273 (329)
37 1y7p_A Hypothetical protein AF 71.9 14 0.00049 29.6 7.4 62 112-181 4-70 (223)
38 2l5g_A GPS2 protein, G protein 71.0 9.1 0.00031 22.0 4.4 26 48-73 9-34 (38)
39 3mwb_A Prephenate dehydratase; 67.9 17 0.00058 30.5 7.4 56 122-181 211-267 (313)
40 2qmx_A Prephenate dehydratase; 60.7 21 0.00073 29.4 6.6 56 122-181 209-265 (283)
41 2lqj_A Mg2+ transport protein; 60.6 20 0.00068 24.6 5.5 39 112-150 8-47 (94)
42 2qmw_A PDT, prephenate dehydra 60.3 35 0.0012 27.9 7.8 55 122-181 198-253 (267)
43 2oqq_A Transcription factor HY 59.9 12 0.0004 22.1 3.5 21 54-74 3-23 (42)
44 1zme_C Proline utilization tra 55.2 12 0.00043 23.4 3.5 23 53-75 43-65 (70)
45 1kd8_B GABH BLL, GCN4 acid bas 54.8 14 0.00049 21.0 3.1 19 56-74 3-21 (36)
46 2wq1_A General control protein 53.8 15 0.00053 20.4 3.1 19 56-74 2-20 (33)
47 2wt7_A Proto-oncogene protein 49.2 46 0.0016 20.8 6.3 23 52-74 21-43 (63)
48 2dtj_A Aspartokinase; protein- 49.1 67 0.0023 24.0 7.3 53 108-160 11-66 (178)
49 2jee_A YIIU; FTSZ, septum, coi 49.1 25 0.00087 23.7 4.3 25 49-73 15-39 (81)
50 2er8_A Regulatory protein Leu3 48.7 10 0.00035 24.0 2.2 21 53-73 48-68 (72)
51 1gd2_E Transcription factor PA 47.7 19 0.00066 23.5 3.4 21 53-73 28-48 (70)
52 3c3g_A Alpha/beta peptide with 47.5 22 0.00076 19.8 3.1 19 56-74 2-20 (33)
53 1dh3_A Transcription factor CR 47.3 21 0.00071 22.0 3.4 21 54-74 22-42 (55)
54 1xkm_B Distinctin chain B; por 43.3 29 0.00099 17.8 2.9 17 49-65 6-22 (26)
55 2oxj_A Hybrid alpha/beta pepti 43.3 28 0.00097 19.5 3.1 19 56-74 3-21 (34)
56 1kd8_A GABH AIV, GCN4 acid bas 42.5 19 0.00065 20.4 2.3 19 56-74 3-21 (36)
57 3c3f_A Alpha/beta peptide with 40.6 33 0.0011 19.2 3.1 19 56-74 3-21 (34)
58 2dt9_A Aspartokinase; protein- 39.7 1.1E+02 0.0037 22.4 7.6 54 107-160 11-67 (167)
59 2hy6_A General control protein 38.7 24 0.00081 19.8 2.3 19 56-74 3-21 (34)
60 1jnm_A Proto-oncogene C-JUN; B 37.5 36 0.0012 21.2 3.5 23 52-74 20-42 (62)
61 2rrl_A FLIK, flagellar HOOK-le 36.6 1E+02 0.0034 23.5 6.5 47 103-149 102-153 (169)
62 3m48_A General control protein 34.4 28 0.00096 19.4 2.2 18 57-74 3-20 (33)
63 2r2v_A GCN4 leucine zipper; co 34.2 48 0.0016 18.5 3.1 19 56-74 3-21 (34)
64 1pyi_A Protein (pyrimidine pat 34.1 35 0.0012 22.6 3.2 23 53-75 47-69 (96)
65 2dgc_A Protein (GCN4); basic d 33.7 45 0.0015 21.1 3.5 23 52-74 28-50 (63)
66 1p3q_Q VPS9P, vacuolar protein 33.7 36 0.0012 21.1 2.9 26 14-39 3-28 (54)
67 2re1_A Aspartokinase, alpha an 33.5 1.1E+02 0.0037 22.4 6.3 54 107-160 20-74 (167)
68 2bni_A General control protein 32.5 34 0.0012 19.1 2.3 19 56-74 3-21 (34)
69 1hwt_C Protein (heme activator 32.0 16 0.00055 23.5 1.1 21 53-73 57-77 (81)
70 1t2k_D Cyclic-AMP-dependent tr 31.3 52 0.0018 20.4 3.5 22 53-74 21-42 (61)
71 1uo4_A General control protein 31.2 37 0.0013 19.0 2.3 19 56-74 3-21 (34)
72 3coq_A Regulatory protein GAL4 30.0 50 0.0017 21.3 3.4 23 53-75 44-66 (89)
73 2f06_A Conserved hypothetical 28.9 1.5E+02 0.0051 20.8 7.9 50 122-180 81-130 (144)
74 2dnr_A Synaptojanin-1; RRM dom 26.7 1.3E+02 0.0045 20.4 5.1 23 125-148 27-49 (91)
75 3v86_A De novo design helix; c 26.0 64 0.0022 16.6 2.5 16 55-70 1-16 (27)
76 3byp_A CZRB protein; membrane 25.8 1.4E+02 0.0047 19.3 7.8 57 126-183 11-71 (94)
77 3dhx_A Methionine import ATP-b 25.7 1.6E+02 0.0054 20.0 7.9 51 125-179 36-86 (106)
78 2ket_A Cathelicidin-6; antimic 25.2 29 0.001 17.9 1.1 18 18-35 5-22 (27)
79 3lh2_S 4E10_1VI7A_S0_002_N (T8 24.8 1.3E+02 0.0046 18.8 7.6 58 116-186 11-68 (76)
80 2cqn_A Formin-binding protein 24.7 92 0.0031 20.4 3.9 28 17-45 7-34 (77)
81 2zzt_A Putative uncharacterize 24.5 1.7E+02 0.0057 19.8 6.5 57 126-183 11-69 (107)
82 1g1e_B SIN3A; four-helix bundl 24.4 51 0.0017 22.2 2.6 18 47-64 8-25 (89)
83 3s1t_A Aspartokinase; ACT doma 23.5 2.3E+02 0.0079 21.1 8.6 52 109-160 13-67 (181)
84 2jqq_A Conserved oligomeric go 23.3 28 0.00095 27.4 1.2 44 20-67 53-96 (204)
85 1e91_A Paired amphipathic heli 23.0 55 0.0019 21.8 2.5 19 47-65 5-23 (85)
86 1phz_A Protein (phenylalanine 21.6 74 0.0025 27.9 3.7 54 123-181 44-98 (429)
87 1d66_A Protein (GAL4); protein 20.4 26 0.0009 21.4 0.4 15 53-67 51-65 (66)
88 2akf_A Coronin-1A; coiled coil 20.1 1.2E+02 0.004 16.4 3.5 17 57-73 9-25 (32)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.69 E-value=9.2e-17 Score=111.96 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=61.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
.|..||..||+||..||..|..|+++||..+..+|+|.++||..|++||+.|+++.+.+..+++.+.
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999988888888888899999999999999999998877664
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.67 E-value=5e-17 Score=113.83 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=58.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQ-RPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~-~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~~ 75 (188)
.+|..|+.+||+||.+||+.|..|++|||.. .+++|++| |.+||+||+.||.+++.|+.+.+.+..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~I---L~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAV---LRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999986 56666666 999999999999999999998877753
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=5.4e-16 Score=109.96 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=58.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
+|..||..||+||..||+.|..|+++||..+...|+|...||..||+||+.|+++...+...++.+.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999887666777777799999999999999998877665543
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.63 E-value=6.8e-16 Score=108.16 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=57.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
+|..||..||+||..||+.|..|+++||... ..|+|.++||..||+||+.|+++++.|+.+++.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999753 24566666699999999999999999988877764
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.63 E-value=5.2e-16 Score=108.11 Aligned_cols=67 Identities=27% Similarity=0.449 Sum_probs=59.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
.+|..|+..||+||..||..|..|+++||... ..|+|.++||..||+||+.||+.+++|+.+.+.+.
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999764 24577777799999999999999999999887764
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=2.7e-16 Score=104.88 Aligned_cols=56 Identities=30% Similarity=0.469 Sum_probs=48.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC----CCCChhhhHHHHHHHHHHHHHHH
Q 029765 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPM----EATSLPDQLDEATKYIKRLQTNL 63 (188)
Q Consensus 8 ~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~----~k~s~~~~l~~ai~YI~~Lq~~v 63 (188)
+|.+|+.+||.||.+||..|..|++|||...+. .|.|.+++|+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999966432 35566666999999999999865
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=103.34 Aligned_cols=64 Identities=22% Similarity=0.513 Sum_probs=53.4
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 029765 1 MENNPSSSRTDRKTIERNRRNQMKALYSTLNSIVPHQ-RPMEATSLPDQLDEATKYIKRLQTNLERMK 67 (188)
Q Consensus 1 ~~~~~~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~-~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~ 67 (188)
|..-..++|.+|+.+||+||.+||..|..|++|||.. .+++|++| |..||+||+.||..+.=|+
T Consensus 1 ~d~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sI---L~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 1 MDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred CChhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHH---HHHHHHHHHHHHHhhhHHH
Confidence 3444567899999999999999999999999999964 46677777 9999999999999886553
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=1.3e-15 Score=102.07 Aligned_cols=54 Identities=24% Similarity=0.491 Sum_probs=47.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC------CCCCCChhhhHHHHHHHHHHHHHHH
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQR------PMEATSLPDQLDEATKYIKRLQTNL 63 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~------~~~k~s~~~~l~~ai~YI~~Lq~~v 63 (188)
.++..|+.+||+||..||+.|..|++|||... +.+|++| |..||+||+.||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~I---L~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGI---LSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTT---TTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHH---HHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999875 3466666 999999999999764
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.56 E-value=9.8e-16 Score=105.71 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-ChhhhHHHHHHHHHHHHHHHHHHH
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEAT-SLPDQLDEATKYIKRLQTNLERMK 67 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~-s~~~~l~~ai~YI~~Lq~~v~~L~ 67 (188)
-+|..||..||+||..||+.|..|+.+||...+.+|. |...||..||+||+.||+.+++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999965555666 688889999999999999998875
No 10
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.54 E-value=8.9e-15 Score=96.52 Aligned_cols=58 Identities=29% Similarity=0.335 Sum_probs=54.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLE 64 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~ 64 (188)
|+|..||..||+|+..||+.|..||.+||..+...|.|..++|..||+||..||+.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999888899999999999999999998764
No 11
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.52 E-value=2.1e-14 Score=106.90 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=50.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPM-EATSLPDQLDEATKYIKRLQTNLERMKER 69 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~-~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~ 69 (188)
..++..|+.+||+||.+||+.|..|++|||...+. .|++.+.||..||+||+.||+.++.|++.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999987543 35666666999999999999999999865
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.43 E-value=9.9e-14 Score=93.65 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=51.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 029765 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLE 64 (188)
Q Consensus 7 s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~ 64 (188)
.+|..||..||+|+..||+.|..||.+||..+ ..|.|..+||..||+||..||+.++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 35788999999999999999999999999754 6789999999999999999998653
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=2e-14 Score=98.40 Aligned_cols=53 Identities=28% Similarity=0.505 Sum_probs=47.7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIKRLQT 61 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~YI~~Lq~ 61 (188)
+++|..|+.+||+||.+||..|..|++|||.. .+.||++| |..||+||+.||.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasI---L~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHH---HHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHH---HHHHHHHHHHHhc
Confidence 56789999999999999999999999999965 57788887 9999999999874
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.13 E-value=9.2e-12 Score=83.34 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHH
Q 029765 11 DRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQT 61 (188)
Q Consensus 11 ~h~~~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~ 61 (188)
.-+..||+|+..||+.|..||.+||..+...|.|..++|.-||+||..||+
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 446789999999999999999999999988999999999999999999985
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.96 E-value=3e-10 Score=98.10 Aligned_cols=56 Identities=23% Similarity=0.554 Sum_probs=41.5
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCChhhhHHHHHHHHHHHHHH
Q 029765 4 NPSSSRTDRKTIERNRRNQMKALYSTLNSIVP-HQRPMEATSLPDQLDEATKYIKRLQTN 62 (188)
Q Consensus 4 ~~~s~~~~h~~~ER~RR~~~n~~~~~LrsllP-~~~~~~k~s~~~~l~~ai~YI~~Lq~~ 62 (188)
...++|..|+.+||+||++||..|..|++||| ...++||++| |..||.||+.|+..
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~i---l~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKET 64 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHH---HHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHH---HHHHHHHHHHHHhh
Confidence 34778999999999999999999999999999 4568888888 99999999999864
No 16
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.77 E-value=1.5e-08 Score=72.39 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 029765 15 IERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLER 65 (188)
Q Consensus 15 ~ER~RR~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~ 65 (188)
.||.|-..||+.|..||.+||..++..|.|..++|.-||+||..||+-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 368899999999999999999998888999999999999999999988754
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.75 E-value=3.7e-09 Score=92.28 Aligned_cols=54 Identities=28% Similarity=0.504 Sum_probs=49.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCCChhhhHHHHHHHHHHHHHH
Q 029765 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVP----HQRPMEATSLPDQLDEATKYIKRLQTN 62 (188)
Q Consensus 6 ~s~~~~h~~~ER~RR~~~n~~~~~LrsllP----~~~~~~k~s~~~~l~~ai~YI~~Lq~~ 62 (188)
..+|.+|+.+||+||.+||..|..|++||| ...+.||++| |..||+||+.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~i---l~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHH---HHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHH---HHHHHHHHHHhhcc
Confidence 457899999999999999999999999999 5678899999 99999999999843
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.38 E-value=1.2e-06 Score=60.72 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 029765 20 RNQMKALYSTLNSIVPHQ-RPMEATSLPDQLDEATKYIKRLQTNLERMKER 69 (188)
Q Consensus 20 R~~~n~~~~~LrsllP~~-~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~~~ 69 (188)
|..||+.+..|..|||.. .+..|++.+.||..|++||+.||+..+.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999975 45678899999999999999999988777644
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.76 E-value=0.035 Score=37.54 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=54.2
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+.|.+.|.. ++|.+.+|..+|-++|..|.+.+....++.+...+.+.+.+. ...+.|.+.|.++..
T Consensus 5 ~~~l~v~~~D-rpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~----~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKD-KSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK----QDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESC-CTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC----CCHHHHHHHHHHHHH
T ss_pred eEEEEEEECC-CCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC----CCHHHHHHHHHHHHH
Confidence 3567778865 457999999999999999999999888887777777776542 477899999987653
No 20
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.08 E-value=0.11 Score=34.41 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=43.4
Q ss_pred EEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
+.|.+.+.. ++|.|.+|..+|.+.|+.|.+.+....++.....|.+.+.+. .....+.+.|++
T Consensus 6 ~~l~v~~~D-r~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~----~~l~~l~~~L~~ 68 (88)
T 2ko1_A 6 AGIRIVGED-KNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT----DKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEEEEC-CTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH----HHHHHHHHHHTT
T ss_pred EEEEEEEEC-CCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH----HHHHHHHHHHhc
Confidence 456666654 457999999999999999999999876664445566665432 244555555543
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.96 E-value=0.19 Score=38.77 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.|.|.|+. ++|++..|..+|.++|+.|+.++.....+.++.++.+.... ...+.|.+.|.++.
T Consensus 6 ~~~itv~~~D-rpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-----~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTD-RPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-----SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEEC-CTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-----HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCC-CCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-----CCHHHHHHHHHHHH
Confidence 3567888865 45799999999999999999999998888888777776421 25677887777665
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.86 E-value=0.12 Score=40.46 Aligned_cols=50 Identities=4% Similarity=-0.013 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEec
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIG 162 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~ 162 (188)
.+.|.|.|+. ++|++..|..+|.++|+.|+.++..+..+.++..+.+...
T Consensus 5 ~~~ltv~~~D-rpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSD-RVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEEC-CTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCC-CCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 3567888875 4579999999999999999999999888887777777643
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.46 E-value=0.65 Score=35.70 Aligned_cols=67 Identities=7% Similarity=0.120 Sum_probs=49.1
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--------CeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--------DTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--------~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+.|.+.|.. ++|++..|.++|-++|++|..+...+.+ +.++-.+.+... . +.+.+.|.+.|.++..
T Consensus 93 ~~~l~v~~~D-~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~--~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDD-KLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--S--GCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESC-CTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--T--TSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCC-CccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--C--CCCHHHHHHHHHHHHH
Confidence 3567777865 5578999999999999999999988764 244444444432 2 4688999999987654
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.23 E-value=0.49 Score=36.76 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=49.2
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE------DTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~------~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+.|.|.|.. ++|++..|..+|-++|+.|.+++..+.+ +.++..+.+.+.+ ..+ +.|.+.|..+..
T Consensus 93 ~~iltv~g~D-rpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~----~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 93 EYELYVEGPD-SEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF----PLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEEC-CTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG----GGH-HHHHHHHHHHHH
T ss_pred EEEEEEEeCC-CcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC----Ccc-HHHHHHHHHHHH
Confidence 4678888865 5679999999999999999999998876 4555455554432 246 888888876643
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=87.97 E-value=2.1 Score=36.59 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.|.++|..+ +|+...|...|-++|..|+.++-...++.++-.+.+.+.+.. .+.+.|.+.|..+.
T Consensus 12 ~~~lt~~g~Dr-~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~---~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 12 SVLITVTGVDQ-PGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV---ADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH---HTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc---CCHHHHHHHHHHHH
Confidence 46788888764 569999999999999999999999999988777777664331 35577888887653
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=87.31 E-value=5.6 Score=33.26 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=49.9
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.+.+.|..+ +|+...|...|-++|..++.++-... +|.++-.+.+.+.+. ..+.+.|.+.+..+-
T Consensus 22 ~~iLtv~c~Dr-pGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~---~~~~~~L~~~l~~la 90 (302)
T 3o1l_A 22 TFRLVIACPDR-VGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL---PFDLDGFREAFTPIA 90 (302)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS---SSCHHHHHHHHHHHH
T ss_pred eEEEEEECCCC-CCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC---CCCHHHHHHHHHHHH
Confidence 35678888764 56999999999999999999998865 566555555544332 368889998887653
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=86.81 E-value=5.7 Score=32.88 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=49.5
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+.+.+.|..+ +|+...|...|-++|+.++.++-.. ..+.++-.+.+...+ ..+.+.|.+.+..+-.
T Consensus 8 ~~vLtv~c~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~----~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 8 TWILTADCPSM-LGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD----DFDEAGFRAGLAERSE 76 (286)
T ss_dssp CEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS----SCCHHHHHHHHHHHHG
T ss_pred cEEEEEEeCCC-CCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC----CCCHHHHHHHHHHHHH
Confidence 46678888764 5699999999999999999999874 355555544444322 3688999998877643
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=85.68 E-value=6.7 Score=32.50 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=50.7
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.+.+.|..+ +|+...|...|-++|+.++.++-.. .+|.++-.+.+.+.+. ..+.+.|.+.+..+-
T Consensus 6 ~~iLtv~g~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~---~~~~~~L~~~f~~la 74 (288)
T 3obi_A 6 QYVLTLSCPDR-AGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK---VIPLASLRTGFGVIA 74 (288)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC---CCCHHHHHHHHHHHH
T ss_pred eEEEEEECCCC-CCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC---CCCHHHHHHHHHHHH
Confidence 46688888764 5699999999999999999998853 4566666666655443 368889998887654
No 29
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=84.54 E-value=1.6 Score=25.45 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029765 48 QLDEATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 48 ~l~~ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
++.+--+||++|+++-.+|+.-++.+.
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 478889999999999999988776653
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=83.76 E-value=3.2 Score=31.66 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=46.1
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.|.+.... ++|.|.+|..+|.+.|+.+.+.++.... +....+|.+. .+. -..+.+...|.++.
T Consensus 5 ~IsV~v~N-rpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d~----~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 5 ILSVLLEN-ESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GDE----KVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEC-CTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SCH----HHHHHHHHHHHHST
T ss_pred EEEEEEeC-CCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-ccH----HHHHHHHHHHcCCC
Confidence 45555544 4579999999999999999999997654 5666777776 222 35677777777764
No 31
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=83.23 E-value=8.6 Score=31.91 Aligned_cols=69 Identities=7% Similarity=0.028 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.+.+.+.|..+ +|+...|...|-++|+.++.++-.. ..|.++-.+.+...-... ..+.+.|.+.+..+-
T Consensus 10 ~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~-~~~~~~L~~~f~~la 80 (292)
T 3lou_A 10 QFVLTLSCPSA-AGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDAD-ALRVDALRREFEPIA 80 (292)
T ss_dssp EEEEEEEEESC-SCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHH
T ss_pred cEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCccc-CCCHHHHHHHHHHHH
Confidence 46688888765 5699999999999999999999874 456665555554430011 367888988887653
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=83.13 E-value=2.9 Score=31.97 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=46.3
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHh
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFG 182 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i 182 (188)
.|.+.... ++|.|.+|..+|.+.|+.+.+.++.... +....+|.+.. +. -..+.+...|.+++
T Consensus 6 ~IsV~veN-rpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~-d~----~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 6 IISLLMEN-EAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-PD----EIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEC-STTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-CH----HHHHHHHHHHHHST
T ss_pred EEEEEEeC-CCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec-cH----HHHHHHHHHhcCCC
Confidence 45555544 4579999999999999999999997543 66777888862 22 35677777777764
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=79.23 E-value=12 Score=30.91 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+.+.+.|..+ +|+...|...|-++|..++.++-.. .+|.++-.+.+.. .. .+.+.|.+.+..+-.
T Consensus 7 ~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~---~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 7 QYVLSLACQDA-PGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI--PV---AGVNDFNSAFGKVVE 74 (287)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CC------CHHHHHHHHHHG
T ss_pred eEEEEEECCCC-CCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc--CC---CCHHHHHHHHHHHHH
Confidence 46788888764 5699999999999999999998863 3455554444433 22 344588888876543
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=77.33 E-value=8.2 Score=30.29 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=46.8
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.|.+.... ++|.|.+|..+|...|+.+.+.++.... +....+|.+...+ -..+.|...|.++++
T Consensus 31 ~LsVlVeN-~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e-----~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 31 LVSMLVHN-KPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD-----KTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEC-CTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT-----THHHHHHHHHTTSTT
T ss_pred EEEEEECC-CChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH-----HHHHHHHHHhcCcCc
Confidence 45555443 4568999999999999999999997543 5667788886432 356778887777654
No 35
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=75.99 E-value=12 Score=27.25 Aligned_cols=60 Identities=8% Similarity=0.131 Sum_probs=39.5
Q ss_pred EEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.|.|.|.. +.|++.+|+++|-+.++++..+++.+. |. +...+.... ......+.+.+.++
T Consensus 2 ~~~v~~~d-r~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~~~--~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 2 RLEVFCED-RLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAELE--FESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEEECS-CTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECCCC--HHHHHHHHHHHHHS
T ss_pred EEEEEEec-CCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEeCC--HHHHHHHHHHHHcC
Confidence 35677765 457999999999999999999999766 44 223332221 12345555655554
No 36
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=72.28 E-value=43 Score=28.18 Aligned_cols=55 Identities=5% Similarity=0.099 Sum_probs=44.6
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVEDTI-FHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~-~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+|.|.++|..|...|+......+-+..+.. -|.|.+.+.+. ++...+.+.|.++
T Consensus 218 ~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~----~~d~~v~~AL~~L 273 (329)
T 3luy_A 218 GPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA----PWEERFRDALVEI 273 (329)
T ss_dssp STTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC----TTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC----cCCHHHHHHHHHH
Confidence 4678999999999999999999999887765 48899887544 4556777777765
No 37
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=71.94 E-value=14 Score=29.57 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=40.7
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-----DTIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~-----~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+.|.|.+.. ++|+|.+|+.+|-+++..+.+.+..... +....+ +++.+ . ..+.+.++|+++
T Consensus 4 ~VtL~I~a~D-RpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d----~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAEN-KIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG----G-DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEEC-CTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS----S-CHHHHHHHHHTC
T ss_pred eEEEEEEEcC-CCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC----C-CHHHHHHHHhCC
Confidence 3566666654 4569999999999999999999998754 333333 55542 2 678888888754
No 38
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.03 E-value=9.1 Score=21.99 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 48 QLDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 48 ~l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
+|+++-+-|-.|+.+++.|+.+|-++
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999888654
No 39
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=67.94 E-value=17 Score=30.48 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=42.8
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDTI-FHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~-~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
..+|.|.++|..|...|++.....+-+..+.. -|.|.+.+.+. ++-..+.+.|.++
T Consensus 211 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~----~~d~~v~~aL~~L 267 (313)
T 3mwb_A 211 DHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH----ATDSRVADALAGL 267 (313)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC----TTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC----CCcHHHHHHHHHH
Confidence 45678999999999999999999998776544 47888877543 3456677766655
No 40
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=60.72 E-value=21 Score=29.41 Aligned_cols=56 Identities=5% Similarity=0.068 Sum_probs=43.3
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~-~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
..+|.|.++|..|...|+......+-+..+. .-|.|.+.+.+. .+...+.+.|.++
T Consensus 209 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~----~~d~~v~~aL~~L 265 (283)
T 2qmx_A 209 NEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH----REDQNVHNALENL 265 (283)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC----TTSHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC----CCcHHHHHHHHHH
Confidence 3457899999999999999999999887654 468888887644 3446677777665
No 41
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=60.57 E-value=20 Score=24.56 Aligned_cols=39 Identities=3% Similarity=0.024 Sum_probs=30.5
Q ss_pred eEEEEEEecCCC-cChHHHHHHHHHhCCCeEEEEEEEeeC
Q 029765 112 ALEVVLTTGLDF-QFMFIETIRLLHEEGVEIVNASFNVVE 150 (188)
Q Consensus 112 ~v~I~i~c~~~~-~~~l~~il~~Le~l~L~V~sa~vs~~~ 150 (188)
.+.|.++|.... +-...-+++.|+..++.+.+..+..++
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~ 47 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG 47 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC
Confidence 367899997652 346788999999999999999966533
No 42
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=60.31 E-value=35 Score=27.88 Aligned_cols=55 Identities=5% Similarity=0.009 Sum_probs=41.9
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~-~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
..+|.|.++|..|...|++.....+-+..+. .-|.|.+.+. . .+...+.+.|.++
T Consensus 198 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~----~~d~~v~~aL~~L 253 (267)
T 2qmw_A 198 DKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S----AITTDIKKVIAIL 253 (267)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C----CSCHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c----CCcHHHHHHHHHH
Confidence 4457899999999999999999999887654 4588888876 4 2335666666654
No 43
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.89 E-value=12 Score=22.11 Aligned_cols=21 Identities=14% Similarity=0.491 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029765 54 KYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 54 ~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
.|+-+|+.++++|+.+..+|.
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 488888888888887766664
No 44
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.19 E-value=12 Score=23.36 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 029765 53 TKYIKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l~~ 75 (188)
-.||..|+++++.|+.....+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988777653
No 45
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=54.77 E-value=14 Score=20.96 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+.+|++|-.++..++
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5677888888777766654
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=53.85 E-value=15 Score=20.41 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+.+|++|-.++..+.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4677778877777666554
No 47
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.21 E-value=46 Score=20.83 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029765 52 ATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 52 ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
-..|+..|+.++..|+.+...|.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888777665553
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=49.14 E-value=67 Score=23.95 Aligned_cols=53 Identities=19% Similarity=0.009 Sum_probs=32.4
Q ss_pred EECCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 029765 108 EMGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV---EDTIFHTIHSK 160 (188)
Q Consensus 108 ~~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~---~~~~~~ti~~k 160 (188)
...+-..|.|..-.+.+|.+.+|++.|.+.|+.|-....+.. ++..-++|.+.
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 344566677743234456899999999999955555444433 33444455554
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.14 E-value=25 Score=23.67 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029765 49 LDEATKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 49 l~~ai~YI~~Lq~~v~~L~~~~~~l 73 (188)
|..||+-|.-||-++++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887654
No 50
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=48.68 E-value=10 Score=23.99 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029765 53 TKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l 73 (188)
-.||..|+++|+.|+.....+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999876554
No 51
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.65 E-value=19 Score=23.50 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029765 53 TKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l 73 (188)
-.||++|+.+|.+|+.....+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998665443
No 52
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=47.53 E-value=22 Score=19.75 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+.+|++|-.++..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4678888888877776654
No 53
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=47.30 E-value=21 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029765 54 KYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 54 ~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
.|+.+|+.+|..|+.+...|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999988766654
No 54
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=43.32 E-value=29 Score=17.77 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029765 49 LDEATKYIKRLQTNLER 65 (188)
Q Consensus 49 l~~ai~YI~~Lq~~v~~ 65 (188)
|-+|-.|+.+|+.+++.
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77899999999888754
No 55
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.26 E-value=28 Score=19.47 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+.+|+.+|++|-.+++.+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 5678888888877776664
No 56
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.49 E-value=19 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+.+|++|..++..+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4567777777766665553
No 57
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.63 E-value=33 Score=19.17 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+.+|+.+|++|-.++..++
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 5677778877777666554
No 58
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=39.69 E-value=1.1e+02 Score=22.36 Aligned_cols=54 Identities=13% Similarity=-0.045 Sum_probs=35.4
Q ss_pred EEECCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 029765 107 HEMGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV---EDTIFHTIHSK 160 (188)
Q Consensus 107 ~~~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~---~~~~~~ti~~k 160 (188)
....+-..|.+..-...+|.+.+++.+|.+.|+.|...+.+.. +|..-.+|.+.
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 3345566677654334456899999999999888877655432 34455666665
No 59
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.74 E-value=24 Score=19.77 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+.+|++|-.++..++
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677778877777666554
No 60
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.48 E-value=36 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029765 52 ATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 52 ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
--.|+..|+.++..|+.+...|.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888887776654
No 61
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=36.57 E-value=1e+02 Score=23.49 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=36.8
Q ss_pred cEEEEEECCeEEEEEEecCC--Cc---ChHHHHHHHHHhCCCeEEEEEEEee
Q 029765 103 QIEIHEMGSALEVVLTTGLD--FQ---FMFIETIRLLHEEGVEIVNASFNVV 149 (188)
Q Consensus 103 ~V~V~~~g~~v~I~i~c~~~--~~---~~l~~il~~Le~l~L~V~sa~vs~~ 149 (188)
+|.|+..++.+.|.+..... +. .-+.++=+.|.+.||.+..++|+.-
T Consensus 102 ~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 102 HISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 46667778899999987654 11 2478888999999999999999754
No 62
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=34.36 E-value=28 Score=19.38 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029765 57 KRLQTNLERMKERKERLM 74 (188)
Q Consensus 57 ~~Lq~~v~~L~~~~~~l~ 74 (188)
.+|+++|++|-.++..+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHH
Confidence 467777777766665554
No 63
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=34.19 E-value=48 Score=18.54 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+.+|++|-.++..+.
T Consensus 3 MnQledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNA 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4667777777766665543
No 64
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=34.07 E-value=35 Score=22.61 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 029765 53 TKYIKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l~~ 75 (188)
-.|+..|+++++.|+.....+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999988777653
No 65
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.69 E-value=45 Score=21.07 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029765 52 ATKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 52 ai~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
--.|+..|+.++..|+.+...|.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888887766654
No 66
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=33.66 E-value=36 Score=21.10 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC
Q 029765 14 TIERNRRNQMKALYSTLNSIVPHQRP 39 (188)
Q Consensus 14 ~~ER~RR~~~n~~~~~LrsllP~~~~ 39 (188)
.++|-+|...++-+.+|.+.-|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57889999999999999999998863
No 67
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=33.54 E-value=1.1e+02 Score=22.38 Aligned_cols=54 Identities=11% Similarity=-0.045 Sum_probs=33.4
Q ss_pred EEECCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEE
Q 029765 107 HEMGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSK 160 (188)
Q Consensus 107 ~~~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~-~~~~~~ti~~k 160 (188)
....+-..|.|..-...+|.+.+|+++|.++|+.|.....+.. +|....+|.+.
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 3344556677653123456899999999999988877665422 34444555554
No 68
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.55 E-value=34 Score=19.14 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+.+|++|-.++..+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 5678888888877766654
No 69
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.96 E-value=16 Score=23.52 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029765 53 TKYIKRLQTNLERMKERKERL 73 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l 73 (188)
-.||..|+++|..|+.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999998665444
No 70
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.33 E-value=52 Score=20.36 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029765 53 TKYIKRLQTNLERMKERKERLM 74 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l~ 74 (188)
-.|+..|+.++..|+.+...|.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888777665554
No 71
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=31.18 E-value=37 Score=18.99 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029765 56 IKRLQTNLERMKERKERLM 74 (188)
Q Consensus 56 I~~Lq~~v~~L~~~~~~l~ 74 (188)
+++|+++|++|-.++..++
T Consensus 3 M~QLEdKVEeLl~~n~~Le 21 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIE 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677777777776665554
No 72
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.98 E-value=50 Score=21.34 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 029765 53 TKYIKRLQTNLERMKERKERLMG 75 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~~~~~~l~~ 75 (188)
-.|+..|+++++.|+.....+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 36999999999999988777653
No 73
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.93 E-value=1.5e+02 Score=20.75 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=32.8
Q ss_pred CCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHH
Q 029765 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKK 180 (188)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~ 180 (188)
.++|.+.+++++|.+.|+.|...-....+++....|.. . +.+...+.|++
T Consensus 81 d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~-------d~~~A~~~L~~ 130 (144)
T 2f06_A 81 NVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S-------NMDKCIEVLKE 130 (144)
T ss_dssp SSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S-------CHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C-------CHHHHHHHHHH
Confidence 34578999999999999999665444344555444433 2 34556666665
No 74
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.65 E-value=1.3e+02 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEEe
Q 029765 125 FMFIETIRLLHEEGVEIVNASFNV 148 (188)
Q Consensus 125 ~~l~~il~~Le~l~L~V~sa~vs~ 148 (188)
.++..+++.|..+| +|+.+.+..
T Consensus 27 ~l~~~L~~~F~~~G-~Vi~vr~~~ 49 (91)
T 2dnr_A 27 ALIDELLQQFASFG-EVILIRFVE 49 (91)
T ss_dssp HHHHHHHHHHHTTC-CEEEEEECS
T ss_pred HHHHHHHHHHHhCC-CeEEEEEec
Confidence 47899999999999 899988765
No 75
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.98 E-value=64 Score=16.60 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 029765 55 YIKRLQTNLERMKERK 70 (188)
Q Consensus 55 YI~~Lq~~v~~L~~~~ 70 (188)
|+-+|+.++-+|+.+.
T Consensus 1 yvyqlkdevgelkgev 16 (27)
T 3v86_A 1 YVYQLKDEVGELKGEV 16 (27)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHH
Confidence 4455555555555443
No 76
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=25.77 E-value=1.4e+02 Score=19.30 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhC----CCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 126 MFIETIRLLHEE----GVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 126 ~l~~il~~Le~l----~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+..|.+.+.+. -.+|.+..+-..|...+.++|+.+.+... -.++..+.+++.+.+.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~-~~~~h~i~~~ie~~l~ 71 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTP-VEEAHRLCDELERALA 71 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCB-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCc-HHHHHHHHHHHHHHHH
Confidence 466677777654 57888888888888888999999865421 1245566666666553
No 77
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=25.67 E-value=1.6e+02 Score=19.97 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHH
Q 029765 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLK 179 (188)
Q Consensus 125 ~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~ 179 (188)
..++.+.+.+ ...+.++.+++...++..+=++.+.+.+.. .+.+...+.|+
T Consensus 36 PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~---~~~~~ai~~L~ 86 (106)
T 3dhx_A 36 PLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHGTQ---QDTQAAIAWLQ 86 (106)
T ss_dssp CHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESCH---HHHHHHHHHHH
T ss_pred hHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeCCH---HHHHHHHHHHH
Confidence 3666666665 356788999999999999988888886543 23444444444
No 78
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=25.21 E-value=29 Score=17.90 Aligned_cols=18 Identities=28% Similarity=0.683 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 029765 18 NRRNQMKALYSTLNSIVP 35 (188)
Q Consensus 18 ~RR~~~n~~~~~LrsllP 35 (188)
+=|++.+.+|..|.-.+|
T Consensus 5 rfrkkfkklfkklspvip 22 (27)
T 2ket_A 5 RFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp HHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHhcCcccc
Confidence 347888999999887776
No 79
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=24.84 E-value=1.3e+02 Score=18.85 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=39.2
Q ss_pred EEEecCCCcChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhccCC
Q 029765 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQDGS 186 (188)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~~~~ 186 (188)
.+.|+. + .+-+|...|++.++.|.+...+.. +.+++.+ ..+ ..+.+.+.|..+..|..
T Consensus 11 ~l~~dY--~-~~g~v~~~L~~~~~~I~~~~Y~~~---V~l~v~v--p~~-----~~~~~~~~L~d~t~G~~ 68 (76)
T 3lh2_S 11 TLQANW--F-DITGILWLLGQVDGKIINSDVQAF---VLLRVAL--PAA-----KVAEFSAKLADFSGGSL 68 (76)
T ss_dssp EEEECH--H-HHHHHHHHHHHTTCEEEEEEEEEE---EEEEEEE--CC------CC-CHHHHHHHHHTTCC
T ss_pred EEEEcc--c-CHHHHHHHHHHCCCEEEcccccCe---EEEEEEE--CHH-----HHHHHHHHHHHHhCCEE
Confidence 445654 2 588899999999999999888543 4444444 333 33668888888887764
No 80
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=24.66 E-value=92 Score=20.36 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCh
Q 029765 17 RNRRNQMKALYSTLNSIVPHQRPMEATSL 45 (188)
Q Consensus 17 R~RR~~~n~~~~~LrsllP~~~~~~k~s~ 45 (188)
|+|| ...+....|+.+-|.....+.+..
T Consensus 7 r~rr-l~~~F~~mLk~~~p~I~~~s~We~ 34 (77)
T 2cqn_A 7 GMKR-KESAFKSMLKQAAPPIELDAVWED 34 (77)
T ss_dssp SHHH-HHHHHHHHHHTCSSCCCTTCCHHH
T ss_pred HHHH-HHHHHHHHHHhcCCCCCCCCCHHH
Confidence 3443 345667778887777766555444
No 81
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=24.53 E-value=1.7e+02 Score=19.77 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhCC--CeEEEEEEEeeCCeEEEEEEEEecCCCCCCccHHHHHHHHHHHhc
Q 029765 126 MFIETIRLLHEEG--VEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISERLKKFGQ 183 (188)
Q Consensus 126 ~l~~il~~Le~l~--L~V~sa~vs~~~~~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~i~ 183 (188)
.+..|.+++.+.. .+|....+-..|+.++.++++.+.+... -.++..+.+++.+.+.
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~s-v~eah~i~~~ie~~L~ 69 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMS-VKDAHELTVKIRKEML 69 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCC-HHHHHHHHHHHHHHHH
Confidence 4567777887653 5677777777888888999999865420 1245567777666553
No 82
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=24.41 E-value=51 Score=22.24 Aligned_cols=18 Identities=11% Similarity=0.541 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029765 47 DQLDEATKYIKRLQTNLE 64 (188)
Q Consensus 47 ~~l~~ai~YI~~Lq~~v~ 64 (188)
..+.+|++||+.++.+-+
T Consensus 8 ~~~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 8 VEFNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 348999999999998854
No 83
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.46 E-value=2.3e+02 Score=21.07 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=34.4
Q ss_pred ECCeEEEEEEecCCCcChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 029765 109 MGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV---EDTIFHTIHSK 160 (188)
Q Consensus 109 ~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~sa~vs~~---~~~~~~ti~~k 160 (188)
..+-..|.|..-...+|.+.+|+.+|.+.|+.|.-..-+.. +|..-.+|.+.
T Consensus 13 ~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 13 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 34555666653334457899999999999988876654322 45555666665
No 84
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=23.26 E-value=28 Score=27.36 Aligned_cols=44 Identities=9% Similarity=0.391 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 029765 20 RNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMK 67 (188)
Q Consensus 20 R~~~n~~~~~LrsllP~~~~~~k~s~~~~l~~ai~YI~~Lq~~v~~L~ 67 (188)
|..++.-...||-|.-..- ...-+++.+|++|++.|-+-...|+
T Consensus 53 ~~Dl~~F~~QL~qL~~~~i----~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDDI----SNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHSC----STTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888763221 2234559999999999987776654
No 85
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=22.95 E-value=55 Score=21.85 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 029765 47 DQLDEATKYIKRLQTNLER 65 (188)
Q Consensus 47 ~~l~~ai~YI~~Lq~~v~~ 65 (188)
..+.+|++|++.++.+-+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHHHhc
Confidence 4589999999999988654
No 86
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=21.56 E-value=74 Score=27.86 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=40.0
Q ss_pred CcChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCccHHHHHHHHHHH
Q 029765 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKIGDSGSDHDASARISERLKKF 181 (188)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~sa~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~l~~~L~~~ 181 (188)
.+|.|.++|..|...|+.+.+..+-+..+ ..-|.|.+.+. . .+-..+.+.|.++
T Consensus 44 ~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h----~~d~~v~~AL~eL 98 (429)
T 1phz_A 44 EVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-K----RTKPVLGSIIKSL 98 (429)
T ss_dssp CTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-G----GGHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-e----CCCHHHHHHHHHH
Confidence 35689999999999999999999987754 44688888876 3 2334455555544
No 87
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=20.40 E-value=26 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029765 53 TKYIKRLQTNLERMK 67 (188)
Q Consensus 53 i~YI~~Lq~~v~~L~ 67 (188)
..||..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 469999999998775
No 88
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.09 E-value=1.2e+02 Score=16.38 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029765 57 KRLQTNLERMKERKERL 73 (188)
Q Consensus 57 ~~Lq~~v~~L~~~~~~l 73 (188)
+.|+.-+++|+++.+.+
T Consensus 9 r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455554444433
Done!