BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029766
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
Length = 262
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 54 ISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRS 113
+ST ++ L+ Q++EWN+R +S+ HA+ + LY + ++ D + P+ +
Sbjct: 30 LSTRLTGGFHKLSARQKIEWNSRTVSSFHALVVGCFCLYIL----VYDDAVNADPV-WGD 84
Query: 114 SWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YT 171
++ + V+ GY ++DL +I + + +G +V HH + A Y + GEG L +
Sbjct: 85 PFMVKLNVAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVL--GEGMLPYFG 142
Query: 172 YMVLISEVTTPEINMRW 188
LI+E +TP +N RW
Sbjct: 143 NFRLIAEFSTPFVNQRW 159
>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1
Length = 264
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
++ ++S+ + + Y L + +WN+R +STVHA+ I L Y+ W D D + P+
Sbjct: 23 VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78
Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
+ L + ++ GY DL ++ + ++G + +V HH + A Y + G
Sbjct: 79 -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137
Query: 170 YTYMVLISEVTTPEINMRW 188
+ LISE++TP +N RW
Sbjct: 138 FANFRLISELSTPFVNQRW 156
>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1
Length = 276
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
YN L+ +++EWN+R +ST H++ + LY F F + T P+ +++ N
Sbjct: 50 GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFF----FDEATITDPLWGDPTYV-NIN 104
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
+ + GY ++DL +I + + +G +++HH A + + +G L++E++
Sbjct: 105 IATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELS 164
Query: 181 TPEINMRW 188
+P +N RW
Sbjct: 165 SPFVNQRW 172
>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1
Length = 263
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
+N L+ +++EWN+R +ST H++ + L Y+F LF + P+ S L+N
Sbjct: 37 GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGL-YIF---LFDEATKADPLWGGPS-LANVN 91
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
+ ++ GY ++DL +I + +G +++HH S A + +G L++E++
Sbjct: 92 IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151
Query: 181 TPEINMRW 188
+P +N RW
Sbjct: 152 SPFVNQRW 159
>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1
Length = 258
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 29 DPFIPYTSILAGLLACKVVYD-LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFIT 87
D I Y + L ++++ ++ + T Y Y L+ ++ EW++R +ST HA+ +
Sbjct: 3 DVLISYCVVTGSFLGFQLLFSAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNHALIVG 62
Query: 88 ALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEY 147
+ LY + + D + PI W+ + ++ GY + DL ++ + +
Sbjct: 63 SACLYIL----AYDDAVNADPIWGDPFWV-KMNVAITCGYLVQDLLLLARFWKVMRDPYM 117
Query: 148 VVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
V HH + Y + G + LISE++TP +N RW
Sbjct: 118 VCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRW 158
>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1
Length = 259
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 31 FIPYTSILAGLLACKVVYDL-TQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITAL 89
FI Y + L ++++ + + T Y Y L+ ++ EW++R +ST HA+ + +
Sbjct: 6 FISYCVVTGSFLGFQLLFSIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVVGSG 65
Query: 90 SLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVV 149
LY + + + + PI W+ + ++ GY + DL ++ + + V
Sbjct: 66 CLYIL----AYDEAVNADPIWGDPFWV-KMNVAITCGYLVHDLLLLARFWKVMRDPYMVC 120
Query: 150 HHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
HH + Y + G + LISE++TP +N RW
Sbjct: 121 HHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRW 159
>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56b PE=3 SV=1
Length = 257
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 15/159 (9%)
Query: 37 ILAGLLACKVVYD-----LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSL 91
IL L C +++ L ++I + K G + +R+EW NR ISTV+AI +ALS+
Sbjct: 8 ILYQDLPCFLLFTSLHLFLPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSI 67
Query: 92 YYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHH 151
Y +++++ + + +S +S F YF+ D + + L ++HH
Sbjct: 68 YCLYYNEWIVNSLRS------TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHH 121
Query: 152 SLSGIAVAYSMFSGEGQLYTYMV--LISEVTTPEINMRW 188
+++ ++++ G+G + ++ +E+TTP IN+R+
Sbjct: 122 TIA--LLSFTFLGGKGLAHHLLLSYTFTEITTPLINLRF 158
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLAD 131
EWN R ++ H I I L+ Y F + T P T +++ L +S+GYFL D
Sbjct: 32 EWNCRLVTLFHGILIICLTAYIGF---IAGPWPFTHPGT-ENTYFQILTLVLSLGYFLFD 87
Query: 132 LGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEVTTPEINMRW 188
M + +Y G + HH++S + ++ GE + T VL SE+T P + RW
Sbjct: 88 --MAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARW 143
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
++ L K + EWN R ++ H I LS Y F + P T L
Sbjct: 22 SFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTP----LQVHV 77
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEV 179
L +++GYF+ DLG +Y G + HH+LS + + ++ GE VL SE+
Sbjct: 78 LCLTLGYFIFDLGWC--IYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEI 135
Query: 180 TTPEINMRW 188
T P + +RW
Sbjct: 136 TNPLLQIRW 144
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 59 FKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSN 118
+ ++ L K + EW+ R ++ H + LS Y F + P T L
Sbjct: 20 YTSFCCLNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTP----LQV 75
Query: 119 FGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-S 177
L +++GYF+ DLG +Y G + HH+LS + + ++ GE VL S
Sbjct: 76 HVLCLTLGYFIFDLGWC--IYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNAVLFGS 133
Query: 178 EVTTPEINMRW 188
E+T P + MRW
Sbjct: 134 EITNPLLQMRW 144
>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum
GN=tmem56a PE=3 SV=1
Length = 258
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 69 QRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYF 128
++EW N+ ++T+ +I +LS Y ++ + + T + LS+F L YF
Sbjct: 47 SKIEWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTS-----TCALSDFILKFISFYF 101
Query: 129 LADLGMIFWLYPSLGGMEYVVHHSLSGIA--VAYSMFSGEGQLYTYMVLISEVTTPEINM 186
L D + Y L ++HH + GI V ++ + L L+ E+T P I+M
Sbjct: 102 LFDALHLIIYYKQLFDWPIIIHHLVVGILSYVYIGLYYKKVHLTLLYFLLFEITNPFIHM 161
Query: 187 RW 188
+W
Sbjct: 162 KW 163
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
++ L K + EW+ R ++ H + LS Y F + P T L
Sbjct: 22 SFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTP----LQVHV 77
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEV 179
L +++GYF+ DLG +Y G + HH+LS + + ++ GE VL SE+
Sbjct: 78 LCLTLGYFIFDLGWC--VYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSEL 135
Query: 180 TTPEINMRW 188
T P + MRW
Sbjct: 136 TNPLLQMRW 144
>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56c PE=3 SV=1
Length = 272
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWS----DLFSDQQHTGPITFRSSW 115
KAY LT+ +++EW+ R +S +HA + + S D+F Q + +
Sbjct: 53 KAYTTLTEKKKLEWDQRVVSMIHAFLVLPFCIISAVESFKYGDIFYFQNDSLLMV----- 107
Query: 116 LSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSL---SGIAVAYSMFSGEGQLYTY 172
L +S GYF+ DL +I + P L G ++H + S I VA
Sbjct: 108 -----LSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSSNIYVALPHGRPCFVPIVA 161
Query: 173 MVLISEVTTPEINMR 187
++LI+E++T +NM+
Sbjct: 162 ILLITEISTIPLNMK 176
>sp|P78595|CDR2_CANAL Multidrug resistance protein CDR2 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=CDR2 PE=3 SV=2
Length = 1499
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 20 VLVKNYI--IADPFIPYTSILA----GLLACKVVYDLTQLISTFYFKA 61
V+ +N++ DP IP SIL+ GL+ V ++L + TFYF+
Sbjct: 498 VIARNFLRMKGDPSIPLISILSQLVMGLILASVFFNLRKSTDTFYFRG 545
>sp|O13752|YF22_SCHPO Uncharacterized TLC domain-containing protein C17A2.02c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.02c PE=4 SV=1
Length = 290
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 37 ILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFW 96
IL L +++ L+ +IS Y L+K R+ W+ +S+V +I + L +
Sbjct: 43 ILLSALFYQIINILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGYTCLKE 102
Query: 97 SDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGI 156
+ F D+ F S ++ ++ GYF+ DL I Y + G+ +V+H +
Sbjct: 103 VNAFPDK------LFGYSVVAGDIYALTAGYFVWDL-YITVRYVHITGIGFVIHAIAALF 155
Query: 157 AVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
+ +S + Y L E++TP +N+ +
Sbjct: 156 VITFS-YRPYLMYYGPTYLSWELSTPFLNIHY 186
>sp|Q3U4B4|LIPN_MOUSE Lipase member N OS=Mus musculus GN=Lipn PE=2 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 115 WLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFS 164
WL NF G S+G+ LAD G W+ S G H +LS + FS
Sbjct: 96 WLENFANG-SLGFILADAGYDVWMGNSRGNTWSRRHKTLSANEEKFWAFS 144
>sp|P21951|DPOE_YEAST DNA polymerase epsilon catalytic subunit A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=POL2 PE=1 SV=1
Length = 2222
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 109 ITFRSSWLSNFGLGVSVGYFLADLGMI---FWLYPSLGGMEYVVHHSLSGIAVAYSMFSG 165
+TFRS + G G+ G+ + DL M +L + Y++H S +S+F
Sbjct: 1445 VTFRSKAMGALGKGIQQGFEMKDLSMAENERYLSGFSMDIGYLLHFPTSIGYEFFSLFKS 1504
Query: 166 EGQLYTYMVLISEVTTPEIN 185
G T +VL EIN
Sbjct: 1505 WGDTITILVLKPSNQAQEIN 1524
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,071,928
Number of Sequences: 539616
Number of extensions: 2562903
Number of successful extensions: 6803
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6782
Number of HSP's gapped (non-prelim): 26
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)