Query 029766
Match_columns 188
No_of_seqs 144 out of 561
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4561 Uncharacterized conser 99.9 1.9E-25 4.1E-30 186.5 -11.4 169 13-188 8-182 (281)
2 PF03798 TRAM_LAG1_CLN8: TLC d 99.9 6.5E-22 1.4E-26 156.7 9.2 116 72-188 1-117 (198)
3 KOG4474 Uncharacterized conser 99.8 3.2E-21 7E-26 158.2 8.3 119 64-187 37-155 (253)
4 smart00724 TLC TRAM, LAG1 and 99.8 1.2E-20 2.6E-25 151.5 9.3 117 68-188 1-119 (205)
5 COG5058 LAG1 Protein transport 94.8 0.014 3.1E-07 50.2 1.6 118 66-185 150-274 (395)
6 KOG1607 Protein transporter of 88.8 4.3 9.3E-05 35.2 9.3 101 60-161 76-179 (318)
7 PF02674 Colicin_V: Colicin V 46.0 1.1E+02 0.0024 22.4 6.8 34 62-95 84-117 (146)
8 PF06423 GWT1: GWT1; InterPro 31.7 2.2E+02 0.0048 21.3 9.8 55 37-91 5-59 (136)
9 PF00558 Vpu: Vpu protein; In 30.8 69 0.0015 22.2 3.1 22 54-75 22-43 (81)
10 PF12650 DUF3784: Domain of un 27.7 1.9E+02 0.0041 20.0 5.1 34 60-93 24-57 (97)
11 PF10550 Toxin_36: Conantokin- 27.5 68 0.0015 14.8 1.7 11 12-22 3-13 (15)
12 PRK10582 cytochrome o ubiquino 26.5 2.6E+02 0.0056 20.4 6.7 58 33-96 42-101 (109)
13 COG1114 BrnQ Branched-chain am 24.9 5.1E+02 0.011 23.6 8.3 67 65-137 136-202 (431)
14 PF09335 SNARE_assoc: SNARE as 22.7 2.7E+02 0.0059 19.3 7.7 24 113-136 96-119 (123)
15 PF15559 DUF4660: Domain of un 21.9 39 0.00084 24.7 0.6 13 67-79 54-66 (108)
16 PF03511 Fanconi_A: Fanconi an 21.6 2E+02 0.0044 18.9 3.8 49 37-90 4-52 (64)
17 PF15396 FAM60A: Protein Famil 21.5 47 0.001 27.2 1.0 20 58-78 58-77 (213)
18 PF01471 PG_binding_1: Putativ 20.8 85 0.0018 19.2 2.0 16 3-18 26-41 (57)
19 PF08900 DUF1845: Domain of un 20.4 4E+02 0.0086 21.6 6.3 57 35-91 110-170 (217)
20 PF11239 DUF3040: Protein of u 20.3 1.1E+02 0.0024 20.8 2.6 25 1-25 1-25 (82)
No 1
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.87 E-value=1.9e-25 Score=186.50 Aligned_cols=169 Identities=35% Similarity=0.497 Sum_probs=132.5
Q ss_pred HHHHHHHHhhhhcccCCCcccHHHHHHHHHHHHHHHHHH---HHhHHHhhhhhcCCCcchhhhhh-hHhHHHHHHHHHHH
Q 029766 13 SYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLT---QLISTFYFKAYNGLTKIQRMEWN-NRGISTVHAIFITA 88 (188)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~i~~s~~~~~~v~~ls---~~ls~~l~k~y~~l~~~~k~~w~-~r~vS~~HAii~~~ 88 (188)
+.-.+-+..+.+...+.+..++......+++|..+|.+. +..+....++|++++++.|++|| +|+||++|+++++
T Consensus 8 ~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~~- 86 (281)
T KOG4561|consen 8 ARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVSS- 86 (281)
T ss_pred CcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhhc-
Confidence 334455666777777888888888899999999999988 77777777999999999999999 9999999999998
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHH--HHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHhcCC
Q 029766 89 LSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVS--VGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGE 166 (188)
Q Consensus 89 ~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s--~GYFl~Dl~~~~~~~~~~~~~~~l~HH~~~i~~~~~~l~~~~ 166 (188)
++|+++.++.+. +|.. .+++........-+ .|||++|+..+.++++..+|.+|++||+++..........|.
T Consensus 87 -s~y~lf~~~~f~----yD~~-~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~~ 160 (281)
T KOG4561|consen 87 -SLYFLFGTPYFH----YDKA-TGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRGV 160 (281)
T ss_pred -ccceeecCcccc----hhhh-hccceeecceeeccccceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecCc
Confidence 888888776444 2322 22222222222233 459999998666678889999999999999444445555778
Q ss_pred hhHHHHHHHHHHhhcccccccC
Q 029766 167 GQLYTYMVLISEVTTPEINMRW 188 (188)
Q Consensus 167 ~~~~~~~~Ll~ElSTPFlnlRW 188 (188)
+++++..+|++|+||||+|+||
T Consensus 161 g~y~~~~~L~~ElSTPFvnlrw 182 (281)
T KOG4561|consen 161 GQYYAGTFLMAELSTPFVNLRW 182 (281)
T ss_pred cceeeeeeheeecCCceeeHHH
Confidence 9999999999999999999998
No 2
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.86 E-value=6.5e-22 Score=156.66 Aligned_cols=116 Identities=34% Similarity=0.604 Sum_probs=96.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhccccCC-hhHHHH
Q 029766 72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGG-MEYVVH 150 (188)
Q Consensus 72 ~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~-~~~l~H 150 (188)
||++|++|++|+++++.+|++++..++++.++.++++. .++++......++++|||++|++.+....+..+| +++++|
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H 79 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPW-YYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH 79 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCcc-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 69999999999999999999999987522222222332 4456677889999999999999999985544433 899999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcccccccC
Q 029766 151 HSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188 (188)
Q Consensus 151 H~~~i~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRW 188 (188)
|++++.++..+...+.+++++..+++.|+||||+|+||
T Consensus 80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~ 117 (198)
T PF03798_consen 80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRW 117 (198)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHH
Confidence 99999999999888889999999999999999999997
No 3
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=3.2e-21 Score=158.16 Aligned_cols=119 Identities=24% Similarity=0.280 Sum_probs=105.2
Q ss_pred CCCcchhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhccccC
Q 029766 64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG 143 (188)
Q Consensus 64 ~l~~~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~ 143 (188)
.++..+|.+|.|+.||++||++++.++.+++..++ ..-.|++ ...++.+..+.++|+|||++|++++..+.....
T Consensus 37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~----~~~~~~~-~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~ 111 (253)
T KOG4474|consen 37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDP----EMVDDPI-TYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL 111 (253)
T ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCc----ccccCHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 56777799999999999999999999999999853 3335666 667888899999999999999999997544456
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhccccccc
Q 029766 144 GMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMR 187 (188)
Q Consensus 144 ~~~~l~HH~~~i~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR 187 (188)
.+++++||.+++.++..++.++.+..++.+.+++|+|+||+|+|
T Consensus 112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R 155 (253)
T KOG4474|consen 112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLR 155 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 79999999999999999999999888999999999999999998
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.83 E-value=1.2e-20 Score=151.45 Aligned_cols=117 Identities=26% Similarity=0.330 Sum_probs=98.4
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhccccC--Ch
Q 029766 68 IQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG--GM 145 (188)
Q Consensus 68 ~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~--~~ 145 (188)
+|+.||++|++|.+||++++..+++.... ++++...++. .+.++..+...++++|||++|++.+..+.+... ++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~ 76 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK 76 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 47899999999999999999999876652 1222233555 778999999999999999999999986444333 89
Q ss_pred hHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcccccccC
Q 029766 146 EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188 (188)
Q Consensus 146 ~~l~HH~~~i~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRW 188 (188)
++++||++++.++..+...+...+++...++.|+||||+|+||
T Consensus 77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~ 119 (205)
T smart00724 77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRK 119 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999888888888888888999999999999997
No 5
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=94.80 E-value=0.014 Score=50.23 Aligned_cols=118 Identities=13% Similarity=0.077 Sum_probs=72.0
Q ss_pred CcchhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCC---C-CCCCcccCCChhHHHHHHHHHHHHHHHHHHHHH--hc
Q 029766 66 TKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQ---Q-HTGPITFRSSWLSNFGLGVSVGYFLADLGMIFW--LY 139 (188)
Q Consensus 66 ~~~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~---~-~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~--~~ 139 (188)
++++..+.+...-+.+--.++++.|+|++-.++.|--+ . ..-|. ++.++.-...-.+=.||-+....+..+ -.
T Consensus 150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqaafw~qQa~ilvLqlEk 228 (395)
T COG5058 150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQAAFWAQQACILVLQLEK 228 (395)
T ss_pred CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHHHHHHHHHhhheeeecc
Confidence 44445789999999999999999999998876544411 1 11233 455555555566777888877544443 23
Q ss_pred cccCChhHHHHHHHHHHHHHHHHhcCChhHHHH-HHHHHHhhccccc
Q 029766 140 PSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTY-MVLISEVTTPEIN 185 (188)
Q Consensus 140 ~~~~~~~~l~HH~~~i~~~~~~l~~~~~~~~~~-~~Ll~ElSTPFln 185 (188)
|...-++++.||++.+.-...+.... .--.++ ....+.+|-|||.
T Consensus 229 prkD~~elv~HHIVTllLI~lSY~fh-ftr~GlAI~itmDvSD~~Ls 274 (395)
T COG5058 229 PRKDFKELVFHHIVTLLLIWLSYVFH-FTRMGLAIYITMDVSDFFLS 274 (395)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-HHhccceEEEEEeccHHHHH
Confidence 44556889999999876444443211 111222 2335566666553
No 6
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.79 E-value=4.3 Score=35.21 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=64.1
Q ss_pred hhhcCCCcchhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCcccCCChhHHHHHHHHHHHHHHHHHHHH
Q 029766 60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ---HTGPITFRSSWLSNFGLGVSVGYFLADLGMIF 136 (188)
Q Consensus 60 k~y~~l~~~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~---~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~ 136 (188)
..++.-+++.+.......=.++-=..+.+.|+|++..++-+.+.. .+-|. ....+.....-.+=+||=+.-+..+.
T Consensus 76 ~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~ 154 (318)
T KOG1607|consen 76 LRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALF 154 (318)
T ss_pred HhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555555557778888888888889999999888743222210 11111 23344555556677888777777776
Q ss_pred HhccccCChhHHHHHHHHHHHHHHH
Q 029766 137 WLYPSLGGMEYVVHHSLSGIAVAYS 161 (188)
Q Consensus 137 ~~~~~~~~~~~l~HH~~~i~~~~~~ 161 (188)
.......-+++.+||+++++-...+
T Consensus 155 ~d~~rkDf~~m~vHHvvTl~Li~lS 179 (318)
T KOG1607|consen 155 LDEKRKDFWEMVVHHVVTLILISLS 179 (318)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHH
Confidence 5444445578999999987644444
No 7
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=45.96 E-value=1.1e+02 Score=22.40 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=23.0
Q ss_pred hcCCCcchhhhhhhHhHHHHHHHHHHHHHHHHHH
Q 029766 62 YNGLTKIQRMEWNNRGISTVHAIFITALSLYYVF 95 (188)
Q Consensus 62 y~~l~~~~k~~w~~r~vS~~HAii~~~~al~~l~ 95 (188)
.++..++++..+-||....+-+.+.+..-++.+.
T Consensus 84 l~~~~~~~~~~~~dr~lG~~~G~~~~~li~~~~~ 117 (146)
T PF02674_consen 84 LRRIVKKPFLGWLDRLLGALLGLAKGLLILSLLL 117 (146)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677788888888877777776665444
No 8
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=31.72 E-value=2.2e+02 Score=21.26 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhcCCCcchhhhhhhHhHHHHHHHHHHHHHH
Q 029766 37 ILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSL 91 (188)
Q Consensus 37 i~~s~~~~~~v~~ls~~ls~~l~k~y~~l~~~~k~~w~~r~vS~~HAii~~~~al 91 (188)
=+.|+..|..+|.++-.+.+.+.+.-+...++++.+|-......+=..+......
T Consensus 5 Gi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 59 (136)
T PF06423_consen 5 GIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALY 59 (136)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999888777666544443334445556555555444444333333
No 9
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=30.79 E-value=69 Score=22.20 Aligned_cols=22 Identities=9% Similarity=0.273 Sum_probs=5.5
Q ss_pred hHHHhhhhhcCCCcchhhhhhh
Q 029766 54 ISTFYFKAYNGLTKIQRMEWNN 75 (188)
Q Consensus 54 ls~~l~k~y~~l~~~~k~~w~~ 75 (188)
+-...++.|++..+.+|++|-.
T Consensus 22 vW~iv~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 22 VWTIVYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp HHHHH------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3334457899999999988754
No 10
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=27.66 E-value=1.9e+02 Score=19.99 Aligned_cols=34 Identities=12% Similarity=0.396 Sum_probs=24.6
Q ss_pred hhhcCCCcchhhhhhhHhHHHHHHHHHHHHHHHH
Q 029766 60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYY 93 (188)
Q Consensus 60 k~y~~l~~~~k~~w~~r~vS~~HAii~~~~al~~ 93 (188)
..|+.+|++||.+.|.+-.+-.-+......|+-.
T Consensus 24 aGyntms~eEk~~~D~~~l~r~~g~~~~~~~i~~ 57 (97)
T PF12650_consen 24 AGYNTMSKEEKEKYDKKKLCRFMGKFMLIIGIIL 57 (97)
T ss_pred hhcccCCHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999987666665555555555433
No 11
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=27.51 E-value=68 Score=14.80 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=7.6
Q ss_pred HHHHHHHHHhh
Q 029766 12 KSYQNQAQVLV 22 (188)
Q Consensus 12 ~~~~~~~~~~~ 22 (188)
|.||||.+...
T Consensus 3 ee~~km~~~la 13 (15)
T PF10550_consen 3 EEVAKMAAELA 13 (15)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHHh
Confidence 56888887654
No 12
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=26.51 E-value=2.6e+02 Score=20.38 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcCCCcchhhhhh--hHhHHHHHHHHHHHHHHHHHHh
Q 029766 33 PYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWN--NRGISTVHAIFITALSLYYVFW 96 (188)
Q Consensus 33 ~~~~i~~s~~~~~~v~~ls~~ls~~l~k~y~~l~~~~k~~w~--~r~vS~~HAii~~~~al~~l~~ 96 (188)
|.......++.|.+++.+.... .+=.++.+++-.|| +-+-+.+=.++...+++|++.+
T Consensus 42 ~~~~~~~~i~~lA~vQi~VqL~------~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~~ 101 (109)
T PRK10582 42 SPAVILGTILAMAVVQILVHLV------CFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWN 101 (109)
T ss_pred ChhHHHHHHHHHHHHHHHHHHH------HHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333444444555555554432 33345554444444 5566666667777888888874
No 13
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=24.92 E-value=5.1e+02 Score=23.59 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=45.1
Q ss_pred CCcchhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHH
Q 029766 65 LTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFW 137 (188)
Q Consensus 65 l~~~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~ 137 (188)
+++.|-+||--++..-+--+....+.+-.+..+. ....++- +....+-+...+.-||...|.+..+.
T Consensus 136 l~psklid~vGk~LTPilLv~l~il~i~~~~~p~----g~~~~a~--~~y~~~pf~~GfleGY~TMDaLAal~ 202 (431)
T COG1114 136 LNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPA----GPISAAS--GAYQSQPFSKGFLEGYLTMDALAALA 202 (431)
T ss_pred cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC----CCccccc--HHHHhChHHHHHhcchHHHHHHHHHH
Confidence 6777888888888888888888888877766542 1111211 11112456678899999999987664
No 14
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=22.69 E-value=2.7e+02 Score=19.34 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 029766 113 SSWLSNFGLGVSVGYFLADLGMIF 136 (188)
Q Consensus 113 ~s~~~~~~~~~s~GYFl~Dl~~~~ 136 (188)
.-|...+..+..+|-+.+..+...
T Consensus 96 ~~~~~~f~~~~~~g~~~~~~~~~~ 119 (123)
T PF09335_consen 96 RMPFRRFFLASLIGKLPWTILYVL 119 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888876654
No 15
>PF15559 DUF4660: Domain of unknown function (DUF4660)
Probab=21.88 E-value=39 Score=24.68 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=9.8
Q ss_pred cchhhhhhhHhHH
Q 029766 67 KIQRMEWNNRGIS 79 (188)
Q Consensus 67 ~~~k~~w~~r~vS 79 (188)
..+++||++|+|+
T Consensus 54 lnKqIDWe~~vvk 66 (108)
T PF15559_consen 54 LNKQIDWERRVVK 66 (108)
T ss_pred cccccchhHhhcc
Confidence 3456999999776
No 16
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=21.64 E-value=2e+02 Score=18.91 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhcCCCcchhhhhhhHhHHHHHHHHHHHHH
Q 029766 37 ILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALS 90 (188)
Q Consensus 37 i~~s~~~~~~v~~ls~~ls~~l~k~y~~l~~~~k~~w~~r~vS~~HAii~~~~a 90 (188)
.+.+.+||.++=.+|..+.|+ ...+..+..||+..+...+.-==++++.
T Consensus 4 lLvsLfFFSLM~LlSs~l~p~-----~~~d~~kaldiCaeIL~cLE~R~isWl~ 52 (64)
T PF03511_consen 4 LLVSLFFFSLMGLLSSYLAPK-----EGADSLKALDICAEILGCLEKRKISWLV 52 (64)
T ss_pred hHHHHHHHHHHHHHHHhcCcc-----cccccHHHHHHHHHHHHHHHhCCCcHHH
Confidence 556777766665555544322 2356677789988876655444333433
No 17
>PF15396 FAM60A: Protein Family FAM60A
Probab=21.46 E-value=47 Score=27.16 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=16.0
Q ss_pred hhhhhcCCCcchhhhhhhHhH
Q 029766 58 YFKAYNGLTKIQRMEWNNRGI 78 (188)
Q Consensus 58 l~k~y~~l~~~~k~~w~~r~v 78 (188)
+.|.|++|++..+.+| +|||
T Consensus 58 LVKRwKKLP~Gs~rnW-~HVV 77 (213)
T PF15396_consen 58 LVKRWKKLPPGSKRNW-NHVV 77 (213)
T ss_pred HHHHHhhCCCCcccch-hHHh
Confidence 4489999999999999 5554
No 18
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=20.80 E-value=85 Score=19.16 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.1
Q ss_pred cchhHHHHHHHHHHHH
Q 029766 3 MSEQTVTAIKSYQNQA 18 (188)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (188)
.++.|..||+.+|+..
T Consensus 26 ~~~~t~~Av~~fQ~~~ 41 (57)
T PF01471_consen 26 FDPETREAVKAFQKAN 41 (57)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4678999999999654
No 19
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=20.44 E-value=4e+02 Score=21.64 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--hHHHhh--hhhcCCCcchhhhhhhHhHHHHHHHHHHHHHH
Q 029766 35 TSILAGLLACKVVYDLTQL--ISTFYF--KAYNGLTKIQRMEWNNRGISTVHAIFITALSL 91 (188)
Q Consensus 35 ~~i~~s~~~~~~v~~ls~~--ls~~l~--k~y~~l~~~~k~~w~~r~vS~~HAii~~~~al 91 (188)
...+.|=+.|..+|.+..+ +..++. ..|.-++++++-+|-++....+..++..+-..
T Consensus 110 ~l~~~splGy~~v~LL~~yD~L~~~v~~a~h~glis~~~~~~~l~~~~~~iR~v~~~~~~y 170 (217)
T PF08900_consen 110 PLFFRSPLGYRCVYLLVDYDQLARKVLTAWHYGLISRQEREDWLRRGGRAIRRVFGLAQRY 170 (217)
T ss_pred eeEecCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667776664 444444 67788899999999999888888877666543
No 20
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.34 E-value=1.1e+02 Score=20.76 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhhc
Q 029766 1 MAMSEQTVTAIKSYQNQAQVLVKNY 25 (188)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (188)
|+.||+-...++.+..+-..-|+++
T Consensus 1 M~LSe~E~r~L~eiEr~L~~~DP~f 25 (82)
T PF11239_consen 1 MPLSEHEQRRLEEIERQLRADDPRF 25 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCcHH
Confidence 7889999999999888888888776
Done!