Query 029766
Match_columns 188
No_of_seqs 144 out of 561
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug7_A 2610208M17RIK protein; 8.0 2.4E+02 0.0082 20.2 2.5 41 6-46 34-78 (128)
2 2ls4_A High affinity copper up 10.7 85 0.0029 16.1 0.0 11 121-131 11-21 (26)
3 3fga_D Shugoshin-like 1; PP2A, 7.2 2E+02 0.0069 16.8 1.4 14 8-21 2-15 (47)
4 3vej_A Ubiquitin-like protein 6.8 3.7E+02 0.012 15.3 2.4 17 4-20 22-39 (41)
5 3bpq_A Antitoxin RELB3, RELB; 6.8 1.9E+02 0.0066 17.4 1.2 16 10-27 13-28 (52)
6 2dpr_A CON-T(K7GLA); conantoxi 6.7 3E+02 0.01 13.6 1.7 12 12-23 3-14 (26)
7 1hry_A Human SRY; DNA, DNA-bin 6.2 2.3E+02 0.0078 17.3 1.5 23 54-76 35-57 (76)
8 2gsv_A Hypothetical protein YV 6.0 3.4E+02 0.012 17.3 2.1 17 8-24 50-66 (80)
9 2ke4_A CDC42-interacting prote 5.9 3.6E+02 0.012 18.1 2.5 26 6-31 33-58 (98)
10 1i11_A Transcription factor SO 5.7 3.5E+02 0.012 16.7 2.2 22 54-75 35-56 (81)
No 1
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=7.98 E-value=2.4e+02 Score=20.19 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHhhhhcccCCCcccH----HHHHHHHHHHHH
Q 029766 6 QTVTAIKSYQNQAQVLVKNYIIADPFIPY----TSILAGLLACKV 46 (188)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~i~~s~~~~~~ 46 (188)
|-+.|++.||+........-.-.+-..++ ..+++-+..|.-
T Consensus 34 QvvEA~deY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL~ 78 (128)
T 1ug7_A 34 QLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLE 78 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 67899999999987777765433212221 345556665553
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=10.66 E-value=85 Score=16.15 Aligned_cols=11 Identities=45% Similarity=0.893 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH
Q 029766 121 LGVSVGYFLAD 131 (188)
Q Consensus 121 ~~~s~GYFl~D 131 (188)
+.-.+|||+++
T Consensus 11 lGa~~Gyf~F~ 21 (26)
T 2ls4_A 11 AGAGTGYFLFS 21 (26)
Confidence 44567888764
No 3
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=7.17 E-value=2e+02 Score=16.84 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHh
Q 029766 8 VTAIKSYQNQAQVL 21 (188)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (188)
-+.+|+||.+-+..
T Consensus 2 st~LK~~Q~NNr~L 15 (47)
T 3fga_D 2 STLLKNYQDNNKML 15 (47)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHhhHHH
Confidence 46788888765443
No 4
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=6.81 E-value=3.7e+02 Score=15.31 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=12.3
Q ss_pred chhHH-HHHHHHHHHHHH
Q 029766 4 SEQTV-TAIKSYQNQAQV 20 (188)
Q Consensus 4 ~~~~~-~~~~~~~~~~~~ 20 (188)
.+|+. .+++|-|+-++.
T Consensus 22 ~~~a~~~~L~RLqkGWel 39 (41)
T 3vej_A 22 DQAAVRQVMERLQKGWSL 39 (41)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccc
Confidence 35565 789998887763
No 5
>3bpq_A Antitoxin RELB3, RELB; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=6.80 E-value=1.9e+02 Score=17.38 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhccc
Q 029766 10 AIKSYQNQAQVLVKNYII 27 (188)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (188)
-++.||+..++ +++|+
T Consensus 13 ~~~~fekieEi--ED~GL 28 (52)
T 3bpq_A 13 SRKEYEKIEEI--LDIGL 28 (52)
T ss_dssp CHHHHHHHHHH--HHHHH
T ss_pred cHHHHHHHHHH--HHHHH
Confidence 36889999888 66654
No 6
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=6.66 E-value=3e+02 Score=13.63 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhh
Q 029766 12 KSYQNQAQVLVK 23 (188)
Q Consensus 12 ~~~~~~~~~~~~ 23 (188)
|.||.|.+...+
T Consensus 3 eeyqemlenlre 14 (26)
T 2dpr_A 3 EEYQEMLENLRE 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777665543
No 7
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=6.24 E-value=2.3e+02 Score=17.31 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=16.9
Q ss_pred hHHHhhhhhcCCCcchhhhhhhH
Q 029766 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (188)
Q Consensus 54 ls~~l~k~y~~l~~~~k~~w~~r 76 (188)
++..+.+.++.|+.++|..|...
T Consensus 35 isk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 35 ISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhHHHhCCHHHHHHHHHH
Confidence 45566678899999888777543
No 8
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=5.95 E-value=3.4e+02 Score=17.26 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 029766 8 VTAIKSYQNQAQVLVKN 24 (188)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (188)
..+|||+|++.+.+.+.
T Consensus 50 AvvlkRiqHLdEAY~KV 66 (80)
T 2gsv_A 50 AVVLKRIQHLDEAYNKV 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999988877654
No 9
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=5.92 E-value=3.6e+02 Score=18.12 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHhhhhcccCCCc
Q 029766 6 QTVTAIKSYQNQAQVLVKNYIIADPF 31 (188)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (188)
+-...-+-..||..++..+..++||-
T Consensus 33 ke~~~regl~Km~~vY~~nP~~GD~~ 58 (98)
T 2ke4_A 33 KEVDQREALKKMKDVYEKTPQMGDPA 58 (98)
T ss_dssp HHHHHHTHHHHHHHHHHHCGGGCCGG
T ss_pred HHHHHHHHHHHHHHHHHcCCccCCHH
Confidence 44455677788999999999999884
No 10
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=5.67 E-value=3.5e+02 Score=16.69 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=16.6
Q ss_pred hHHHhhhhhcCCCcchhhhhhh
Q 029766 54 ISTFYFKAYNGLTKIQRMEWNN 75 (188)
Q Consensus 54 ls~~l~k~y~~l~~~~k~~w~~ 75 (188)
++..+.+.++.|+..+|..|..
T Consensus 35 isk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 35 ISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHhhhhhCCHHHHHHHHH
Confidence 5556668899999988877754
Done!