Query 029766
Match_columns 188
No_of_seqs 144 out of 561
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 04:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029766.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029766hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l6ja1 a.20.1.2 (A:29-105) Ge 10.6 51 0.0037 19.7 1.4 16 4-19 36-51 (77)
2 d1ug7a_ a.24.24.1 (A:) Domain 9.4 92 0.0067 20.5 2.5 42 6-47 34-79 (128)
3 d1i11a_ a.21.1.1 (A:) Sox-5 {M 9.4 88 0.0064 17.8 2.2 23 54-76 33-55 (70)
4 d1hsma_ a.21.1.1 (A:) High mob 9.3 69 0.005 18.6 1.7 24 54-77 33-56 (79)
5 d1i27a_ a.4.5.30 (A:) C-termin 9.2 78 0.0057 18.9 1.9 15 4-18 42-56 (73)
6 d1ckta_ a.21.1.1 (A:) High mob 8.9 72 0.0053 18.1 1.6 23 54-76 34-56 (71)
7 d1b77a1 d.131.1.2 (A:1-110) gp 8.7 79 0.0058 20.3 1.9 14 1-14 1-14 (110)
8 d2lefa_ a.21.1.1 (A:) Lymphoid 8.2 80 0.0058 18.8 1.7 24 54-77 33-56 (86)
9 d2gsva1 a.23.7.1 (A:3-69) Hypo 8.1 1.1E+02 0.0078 17.6 2.1 16 8-23 48-63 (67)
10 d1lbua1 a.20.1.1 (A:1-83) Zn2+ 7.0 1.1E+02 0.0078 18.0 1.9 18 3-20 42-59 (83)
No 1
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.65 E-value=51 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHHH
Q 029766 4 SEQTVTAIKSYQNQAQ 19 (188)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (188)
++++..|||.+|+...
T Consensus 36 ~~~~~~AIk~fQ~f~g 51 (77)
T d1l6ja1 36 SKSLGPALLLLQKQLS 51 (77)
T ss_dssp ---CHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcC
Confidence 3567889999998754
No 2
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.44 E-value=92 Score=20.48 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHhhhhcccC----CCcccHHHHHHHHHHHHHH
Q 029766 6 QTVTAIKSYQNQAQVLVKNYIIA----DPFIPYTSILAGLLACKVV 47 (188)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~i~~s~~~~~~v 47 (188)
|-|.|++.||..++.+...-.-. +.+--..-+++-+..|.=+
T Consensus 34 QLVEA~dEYq~lar~L~k~~~~q~~~~~FtEdqKK~l~kIAtCLel 79 (128)
T d1ug7a_ 34 QLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLEL 79 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHHHH
Confidence 67889999999999988876433 2222334566677777643
No 3
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.39 E-value=88 Score=17.76 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=17.5
Q ss_pred hHHHhhhhhcCCCcchhhhhhhH
Q 029766 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (188)
Q Consensus 54 ls~~l~k~y~~l~~~~k~~w~~r 76 (188)
++..+.+.++.|+..+|..|...
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~~ 55 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYEE 55 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 45556678999999998877654
No 4
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=9.31 E-value=69 Score=18.63 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=17.8
Q ss_pred hHHHhhhhhcCCCcchhhhhhhHh
Q 029766 54 ISTFYFKAYNGLTKIQRMEWNNRG 77 (188)
Q Consensus 54 ls~~l~k~y~~l~~~~k~~w~~r~ 77 (188)
++..+.+.|+.|+..+|..|..+.
T Consensus 33 i~k~~~~~W~~ls~~eK~~y~~~a 56 (79)
T d1hsma_ 33 VAKKLGEMWNNTAADDKQPYEKKA 56 (79)
T ss_dssp HHHHHHHHHHTSCSTTTHHHHHHH
T ss_pred HHHHHhhHHhcCCHHHHHHHHHHH
Confidence 444556789999999988887653
No 5
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.24 E-value=78 Score=18.90 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHH
Q 029766 4 SEQTVTAIKSYQNQA 18 (188)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (188)
+||+|+++..+.+..
T Consensus 42 ~eq~V~~la~ILkki 56 (73)
T d1i27a_ 42 SEQTVNVLAQILKRL 56 (73)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 689999888877653
No 6
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.85 E-value=72 Score=18.05 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=17.1
Q ss_pred hHHHhhhhhcCCCcchhhhhhhH
Q 029766 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (188)
Q Consensus 54 ls~~l~k~y~~l~~~~k~~w~~r 76 (188)
++..+.+.|+.|+..+|..|...
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~~ 56 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 45555678999999888887654
No 7
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=8.68 E-value=79 Score=20.34 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=9.5
Q ss_pred CCcchhHHHHHHHH
Q 029766 1 MAMSEQTVTAIKSY 14 (188)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (188)
|..|++|+.+||-+
T Consensus 1 MklS~~T~~iLKNF 14 (110)
T d1b77a1 1 MKLSKDTIAILKNF 14 (110)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHH
Confidence 56677777777654
No 8
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.23 E-value=80 Score=18.78 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=19.0
Q ss_pred hHHHhhhhhcCCCcchhhhhhhHh
Q 029766 54 ISTFYFKAYNGLTKIQRMEWNNRG 77 (188)
Q Consensus 54 ls~~l~k~y~~l~~~~k~~w~~r~ 77 (188)
+|..+.+.|+.|++.+|..|....
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~~A 56 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYELA 56 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555666889999999999887653
No 9
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=8.13 E-value=1.1e+02 Score=17.61 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 029766 8 VTAIKSYQNQAQVLVK 23 (188)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (188)
..+|||+||+.+-+.+
T Consensus 48 a~vlkRiqHLdEAY~K 63 (67)
T d2gsva1 48 AVVLKRIQHLDEAYNK 63 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999887664
No 10
>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]}
Probab=7.02 E-value=1.1e+02 Score=18.03 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=13.8
Q ss_pred cchhHHHHHHHHHHHHHH
Q 029766 3 MSEQTVTAIKSYQNQAQV 20 (188)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (188)
..+.|..|+|.+|+....
T Consensus 42 fg~~t~~AV~~FQ~~~gL 59 (83)
T d1lbua1 42 FGPATKAAVQRFQSAYGL 59 (83)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 357899999999987643
Done!