Your job contains 1 sequence.
>029768
MDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT
GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRSYSRSPSRSPYYSRSRSRS
PYYSRSRSPSRSWSYSPRSRSYSPRGKYSRRSPSLSPARSASQRSPSGSPPRSFSRSGSF
ARTWGVGY
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029768
(188 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 292 8.4e-26 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 284 5.9e-25 1
TAIR|locus:2114643 - symbol:SR34a "Serine/Arginine-Rich P... 264 7.8e-23 1
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 259 2.6e-22 1
FB|FBgn0040284 - symbol:SF2 "SF2" species:7227 "Drosophil... 208 6.7e-17 1
UNIPROTKB|F1NQW8 - symbol:SRSF1 "Serine/arginine-rich-spl... 206 1.1e-16 1
UNIPROTKB|F1NRH9 - symbol:SRSF1 "Serine/arginine-rich-spl... 206 1.1e-16 1
UNIPROTKB|Q5ZML3 - symbol:SRSF1 "Serine/arginine-rich spl... 206 1.1e-16 1
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 206 1.1e-16 1
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 206 1.1e-16 1
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 205 1.4e-16 1
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 205 1.4e-16 1
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 202 2.9e-16 1
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 202 2.9e-16 1
UNIPROTKB|J3KSR8 - symbol:SRSF1 "Serine/arginine-rich-spl... 202 2.9e-16 1
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 202 2.9e-16 1
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 202 2.9e-16 1
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 202 2.9e-16 1
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 202 2.9e-16 1
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 202 2.9e-16 1
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 202 2.9e-16 1
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 198 7.7e-16 1
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 196 1.3e-15 1
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 196 1.3e-15 1
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 196 1.3e-15 1
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 196 1.3e-15 1
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 195 1.6e-15 1
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 192 3.3e-15 1
UNIPROTKB|H0YIB4 - symbol:SRSF9 "Serine/arginine-rich-spl... 165 2.4e-12 1
GENEDB_PFALCIPARUM|PF10_0217 - symbol:PF10_0217 "pre-mRNA... 153 4.5e-10 1
UNIPROTKB|Q8IJI0 - symbol:PF10_0217 "Pre-mRNA splicing fa... 153 4.5e-10 1
UNIPROTKB|F1NJ04 - symbol:SRSF4 "Uncharacterized protein"... 143 5.2e-10 1
GENEDB_PFALCIPARUM|PFE0865c - symbol:PFE0865c "splicing f... 144 1.2e-09 1
UNIPROTKB|Q8I3T5 - symbol:PFE0865c "Splicing factor, puta... 144 1.2e-09 1
UNIPROTKB|F1PEZ0 - symbol:SRSF4 "Uncharacterized protein"... 144 3.4e-09 1
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 144 3.6e-09 1
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 144 3.6e-09 1
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 144 3.6e-09 1
UNIPROTKB|F1LSN0 - symbol:Srsf4 "Protein Sfrs4" species:1... 144 3.6e-09 1
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 144 3.6e-09 1
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 144 3.6e-09 1
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 141 3.7e-09 1
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 141 3.7e-09 1
UNIPROTKB|F1NJ03 - symbol:SRSF4 "Uncharacterized protein"... 143 3.8e-09 1
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 141 3.8e-09 1
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 141 3.8e-09 1
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 141 3.9e-09 1
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 141 3.9e-09 1
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 141 3.9e-09 1
UNIPROTKB|E1C270 - symbol:E1C270 "Uncharacterized protein... 141 3.9e-09 1
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 137 4.6e-09 1
FB|FBgn0004587 - symbol:B52 "B52" species:7227 "Drosophil... 140 6.0e-09 1
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 139 7.8e-09 1
UNIPROTKB|E1BY00 - symbol:SRSF5 "Uncharacterized protein"... 135 9.1e-09 1
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 134 1.1e-08 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 137 1.2e-08 1
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 134 1.2e-08 1
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 134 1.2e-08 1
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 134 1.2e-08 1
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 134 1.3e-08 1
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 134 1.3e-08 1
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 134 1.3e-08 1
ASPGD|ASPL0000075947 - symbol:AN4978 species:162425 "Emer... 133 2.1e-08 1
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 130 3.0e-08 1
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 129 8.5e-08 1
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 126 1.1e-07 1
UNIPROTKB|F1M582 - symbol:F1M582 "Uncharacterized protein... 120 5.1e-07 1
POMBASE|SPAC16.02c - symbol:srp2 "mRNA export factor Srp2... 116 2.3e-06 1
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 104 7.0e-06 1
WB|WBGene00004699 - symbol:rsp-2 species:6239 "Caenorhabd... 100 8.1e-05 1
UNIPROTKB|Q23120 - symbol:rsp-2 "Probable splicing factor... 100 8.1e-05 1
CGD|CAL0003843 - symbol:NPL3 species:5476 "Candida albica... 93 0.00049 1
UNIPROTKB|Q59ZV3 - symbol:NPL3 "Putative uncharacterized ... 93 0.00049 1
ASPGD|ASPL0000011897 - symbol:AN3739 species:162425 "Emer... 96 0.00052 1
FB|FBgn0260010 - symbol:rump "rumpelstiltskin" species:72... 96 0.00074 1
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 53/64 (82%), Positives = 60/64 (93%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LVTGLP SASWQDLKDHMR+AGDVCFS+VF DR GM+G+VDY++YDDMKYAIRKLD +EF
Sbjct: 112 LVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEF 171
Query: 84 RNAF 87
RNAF
Sbjct: 172 RNAF 175
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD G TG+VDYT Y+DMKYA++KLD +EF
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
Query: 84 RNAF 87
RNAF
Sbjct: 182 RNAF 185
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 48/62 (77%), Positives = 55/62 (88%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V GLPSSASWQDLKDHMR+AGDVCF++V RD G G+VDYT+YDDMKYAIRKLD +EF
Sbjct: 125 IVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTEF 184
Query: 84 RN 85
RN
Sbjct: 185 RN 186
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLPSSASWQDLKDHMR+ G+VCFSQVFRD G TGIVDYTSY+DMKYA LD +EF
Sbjct: 123 VVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDTEF 179
Query: 84 RNAF 87
RNAF
Sbjct: 180 RNAF 183
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 38/62 (61%), Positives = 51/62 (82%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+VTGLP+S SWQDLKDHMR AGDVCF+ ++D G +G+V++ ++DMKYAI+KLD S F
Sbjct: 118 MVTGLPASGSWQDLKDHMREAGDVCFADTYKD-G--SGVVEFLRHEDMKYAIKKLDDSRF 174
Query: 84 RN 85
R+
Sbjct: 175 RS 176
>UNIPROTKB|F1NQW8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 IPI:IPI00573494 EMBL:AADN02025726
Ensembl:ENSGALT00000039052 Uniprot:F1NQW8
Length = 184
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++F
Sbjct: 60 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 116
Query: 84 RN 85
R+
Sbjct: 117 RS 118
>UNIPROTKB|F1NRH9 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0060048 "cardiac muscle contraction"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0000395
GeneTree:ENSGT00700000104103 EMBL:AADN02025726 IPI:IPI00819428
Ensembl:ENSGALT00000008863 OMA:EVRQEDI Uniprot:F1NRH9
Length = 192
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++F
Sbjct: 60 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 116
Query: 84 RN 85
R+
Sbjct: 117 RS 118
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++F
Sbjct: 123 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 179
Query: 84 RN 85
R+
Sbjct: 180 RS 181
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++F
Sbjct: 133 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 189
Query: 84 RN 85
R+
Sbjct: 190 RS 191
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 38/62 (61%), Positives = 51/62 (82%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V GLP + SWQDLKDHMR AGDVC++ V RD G TG+V++T Y+D+KYA+RKLD ++F
Sbjct: 126 IVEGLPPTGSWQDLKDHMRDAGDVCYADVARD-G--TGVVEFTRYEDVKYAVRKLDDTKF 182
Query: 84 RN 85
R+
Sbjct: 183 RS 184
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 38/62 (61%), Positives = 51/62 (82%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V GLP + SWQDLKDHMR AGDVC++ V RD G TG+V++T Y+D+KYA+RKLD ++F
Sbjct: 126 IVEGLPPTGSWQDLKDHMRDAGDVCYADVARD-G--TGVVEFTRYEDVKYAVRKLDDTKF 182
Query: 84 RN 85
R+
Sbjct: 183 RS 184
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>UNIPROTKB|J3KSR8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813 Ensembl:ENST00000584668
Uniprot:J3KSR8
Length = 143
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 19 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 75
Query: 84 RN 85
R+
Sbjct: 76 RS 77
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++F
Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 84 RN 85
R+
Sbjct: 181 RS 182
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++F
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDETKF 170
Query: 84 RN 85
R+
Sbjct: 171 RS 172
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++F
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKF 170
Query: 84 RN 85
R+
Sbjct: 171 RS 172
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++F
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKF 170
Query: 84 RN 85
R+
Sbjct: 171 RS 172
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++F
Sbjct: 115 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKF 171
Query: 84 RN 85
R+
Sbjct: 172 RS 173
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++F
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKF 170
Query: 84 RN 85
R+
Sbjct: 171 RS 172
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 37/62 (59%), Positives = 49/62 (79%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+VTGLP + SWQDLKDHMR AGDVCF+ V RD G G+V++ +DM+YA+R+LD +EF
Sbjct: 113 IVTGLPPTGSWQDLKDHMREAGDVCFADVQRD-G--EGVVEFLRREDMEYALRRLDSTEF 169
Query: 84 RN 85
R+
Sbjct: 170 RS 171
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
LV+GLP S SWQDLKDHMR AGDVC++ V +D G+ G+V+Y +DM+YA+RKLD ++F
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GV-GMVEYLRKEDMEYALRKLDDTKF 170
Query: 84 RN 85
R+
Sbjct: 171 RS 172
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 27 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78
GLP S SWQDLKDHMR AGDVC++ V +D G+ G+V+Y +DM+YA+RKL
Sbjct: 62 GLPPSGSWQDLKDHMREAGDVCYADVQKD--GV-GMVEYLRKEDMEYALRKL 110
>GENEDB_PFALCIPARUM|PF10_0217 [details] [associations]
symbol:PF10_0217 "pre-mRNA splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 153 (58.9 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+VT LP + WQ LKD MR+ GDV ++ + +RG GIV++ SYDDM YAI K D +EF
Sbjct: 113 IVTNLPDNCRWQHLKDIMRQCGDVGYANI--ERG--KGIVEFVSYDDMLYAIEKFDGAEF 168
Query: 84 R 84
+
Sbjct: 169 K 169
>UNIPROTKB|Q8IJI0 [details] [associations]
symbol:PF10_0217 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 153 (58.9 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+VT LP + WQ LKD MR+ GDV ++ + +RG GIV++ SYDDM YAI K D +EF
Sbjct: 113 IVTNLPDNCRWQHLKDIMRQCGDVGYANI--ERG--KGIVEFVSYDDMLYAIEKFDGAEF 168
Query: 84 R 84
+
Sbjct: 169 K 169
>UNIPROTKB|F1NJ04 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02043941 IPI:IPI00574862
Ensembl:ENSGALT00000002148 Uniprot:F1NJ04
Length = 222
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 108 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFKSYSDMKRALEKLDGTE 165
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 144 (55.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 25 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 84
VTGLP S SWQDLKDH+R AG+ + VF+D G TG V + + DDM AI K + S FR
Sbjct: 115 VTGLPISGSWQDLKDHLREAGECGHADVFKD-G--TGEVSFFNKDDMLEAIDKFNGSIFR 171
Query: 85 N 85
+
Sbjct: 172 S 172
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 144 (55.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 25 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 84
VTGLP S SWQDLKDH+R AG+ + VF+D G TG V + + DDM AI K + S FR
Sbjct: 115 VTGLPISGSWQDLKDHLREAGECGHADVFKD-G--TGEVSFFNKDDMLEAIDKFNGSIFR 171
Query: 85 N 85
+
Sbjct: 172 S 172
>UNIPROTKB|F1PEZ0 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AAEX03001696
Ensembl:ENSCAFT00000018513 OMA:WESKTHI Uniprot:F1PEZ0
Length = 479
Score = 144 (55.7 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 86 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 143
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 144 (55.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 107 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 144 (55.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 107 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 144 (55.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 107 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>UNIPROTKB|F1LSN0 [details] [associations]
symbol:Srsf4 "Protein Sfrs4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
IPI:IPI00951281 Ensembl:ENSRNOT00000064233 ArrayExpress:F1LSN0
Uniprot:F1LSN0
Length = 492
Score = 144 (55.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 111 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 168
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 144 (55.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 107 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 144 (55.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 107 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 141 (54.7 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 141 (54.7 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|F1NJ03 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KDRGETR
EMBL:AADN02043941 IPI:IPI00581723 Ensembl:ENSGALT00000002149
Uniprot:F1NJ03
Length = 439
Score = 143 (55.4 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 71 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFKSYSDMKRALEKLDGTE 128
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 141 (54.7 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 141 (54.7 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 141 (54.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 141 (54.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 141 (54.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|E1C270 [details] [associations]
symbol:E1C270 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KPRSSHR
EMBL:AADN02019572 EMBL:AADN02019573 IPI:IPI00578317
ProteinModelPortal:E1C270 Ensembl:ENSGALT00000001462 Uniprot:E1C270
Length = 348
Score = 141 (54.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 114 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 171
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 137 (53.3 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V + R+ G+V++ SY DMK A+ KLD +E
Sbjct: 108 IVENLSSRISWQDLKDVMRKAGEVTYVDAHRNNRN-EGVVEFASYSDMKSALEKLDGTE 165
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 140 (54.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G+V++ S DMK AI KLD +E
Sbjct: 123 IVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRN-EGVVEFASLSDMKTAIEKLDDTE 180
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DM+ A+ KLD ++
Sbjct: 117 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERAN-EGVIEFRSYSDMRRALEKLDGTD 174
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 135 (52.6 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 107 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYSDLKNAIEKLSGKE 164
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 111 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD+MR+AG+V ++ + R G++++ Y DMK A+ KLD +E
Sbjct: 110 IVENLSSRCSWQDLKDYMRQAGEVTYADTNKGRKN-EGVIEFRQYSDMKRALEKLDGTE 167
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 111 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 111 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 111 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 111 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 111 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 111 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 133 (51.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 24 LVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+++GLP + SWQDLKD R++G DV +S+ R+ G GIV++ + +D+K A+ KLD E
Sbjct: 106 IISGLPET-SWQDLKDFARQSGLDVVYSETGREPG--RGIVEFETANDLKTAVEKLDGRE 162
Query: 83 FR 84
F+
Sbjct: 163 FK 164
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+ G+V F R + G+V++ S+ DMK AI KLD ++
Sbjct: 116 IVENLSSRISWQDLKDLMRKVGEVTFVDAHRTKKN-EGVVEFASHSDMKNAIEKLDGTD 173
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 129 (50.5 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79
+V L S SWQDLKD MR+AG+V ++ ++R G++++ S+ DM+ A+ KLD
Sbjct: 117 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSHSDMRRALDKLD 171
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82
+V L S SWQDLKD MR+AG+V F+ R G+V++ S+ D+K A+ KL E
Sbjct: 113 IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPNLN-EGVVEFASHSDLKNALEKLSGKE 170
>UNIPROTKB|F1M582 [details] [associations]
symbol:F1M582 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00700000104103 IPI:IPI00557396
Ensembl:ENSRNOT00000034162 Uniprot:F1M582
Length = 284
Score = 120 (47.3 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79
L+ L S +SWQDLKD MR+ G+ ++ ++R G+++++SY DMK A+ KLD
Sbjct: 76 LLRNLSSRSSWQDLKDFMRQ-GEGTYADAHKERTD-EGVIEFSSYSDMKCALNKLD 129
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79
+V L SWQDLKD MR+AG+ F+ R+ G G+V++++ +DM+ A+ L+
Sbjct: 101 IVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDD 70
+V L S SWQDLKD MR+AG+V + R+ G+V++ SY D
Sbjct: 107 IVENLSSRISWQDLKDVMRKAGEVTYVDAHRNNRN-EGVVEFASYSD 152
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 100 (40.3 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 24 LVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78
++ L + SWQD+KDH+R+ G + +S+ + R IV +TS+DD++ A+ KL
Sbjct: 115 VIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHK-RNVNQAIVCFTSHDDLRDAMNKL 169
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 100 (40.3 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 24 LVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78
++ L + SWQD+KDH+R+ G + +S+ + R IV +TS+DD++ A+ KL
Sbjct: 115 VIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHK-RNVNQAIVCFTSHDDLRDAMNKL 169
>CGD|CAL0003843 [details] [associations]
symbol:NPL3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:2000805 "negative regulation of
termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 93 (37.8 bits), Expect = 0.00049, P = 0.00049
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR--DRGGMTGIVDYTSYDDMKYAIRKLD 79
L+T L +WQD+KD +R D + +VF D G T + + S +D+ AI LD
Sbjct: 91 LITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLDRAIPLLD 150
Query: 80 RSEFRN 85
++ FR+
Sbjct: 151 KAVFRD 156
>UNIPROTKB|Q59ZV3 [details] [associations]
symbol:NPL3 "Putative uncharacterized protein NPL3"
species:237561 "Candida albicans SC5314" [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 93 (37.8 bits), Expect = 0.00049, P = 0.00049
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 24 LVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR--DRGGMTGIVDYTSYDDMKYAIRKLD 79
L+T L +WQD+KD +R D + +VF D G T + + S +D+ AI LD
Sbjct: 91 LITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLDRAIPLLD 150
Query: 80 RSEFRN 85
++ FR+
Sbjct: 151 KAVFRD 156
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 96 (38.9 bits), Expect = 0.00052, P = 0.00052
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 25 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT---GIVDYTSYDDMKYAIRKLDRS 81
V L W LKD MR+AGDV F+ V GM+ GIV+Y + + + A+ L
Sbjct: 115 VGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVEYATREQAQNAVNTLSNQ 174
Query: 82 EFRN 85
N
Sbjct: 175 NLMN 178
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 96 (38.9 bits), Expect = 0.00074, P = 0.00074
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 25 VTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMT---GIVDYTSYDDMKYAIRKLDR 80
++ +P WQDLKD RR G + + Q+F D G GIV++ ++++ A+ K++R
Sbjct: 61 ISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNR 120
Query: 81 SE 82
E
Sbjct: 121 YE 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.442 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 188 71 0.00091 102 3 11 22 0.44 28
29 0.42 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 75
No. of states in DFA: 548 (58 KB)
Total size of DFA: 107 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.13u 0.14s 9.27t Elapsed: 00:00:01
Total cpu time: 9.14u 0.14s 9.28t Elapsed: 00:00:01
Start: Thu May 9 17:13:44 2013 End: Thu May 9 17:13:45 2013