BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029768
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 82/92 (89%), Gaps = 1/92 (1%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS++RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD G TG+VDYT Y+DMKYA+
Sbjct: 114 SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYAL 173
Query: 76 RKLDRSEFRNAFSRSYVRVREYDSRRSYSRSP 107
+KLD +EFRNAFS YVRVREYDSR+ SRSP
Sbjct: 174 KKLDDTEFRNAFSNGYVRVREYDSRKD-SRSP 204
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 73/106 (68%), Gaps = 13/106 (12%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+
Sbjct: 116 SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAV 172
Query: 76 RKLDRSEFR-NAFSRSYVRVREYDSRRSYSRSPSRSPYYSRSRSRS 120
RKLD ++FR + +Y+RV+ RSP Y RSRSRS
Sbjct: 173 RKLDNTKFRSHEGETAYIRVK---------VDGPRSPSYGRSRSRS 209
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 63/81 (77%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+
Sbjct: 125 SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAV 181
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 182 RKLDNTKFRSHEGETAYIRVK 202
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 63/81 (77%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+
Sbjct: 115 SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAV 171
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 172 RKLDNTKFRSHEGETAYIRVK 192
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 63/81 (77%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+
Sbjct: 135 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD---GTGVVEFVRKEDMTYAV 191
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 192 RKLDNTKFRSHEGETAYIRVK 212
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 60/77 (77%), Gaps = 4/77 (5%)
Query: 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80
YRV+V GLP + SWQDLKDHMR AGDVC++ V RD TG+V++T Y+D+KYA+RKLD
Sbjct: 123 YRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD---GTGVVEFTRYEDVKYAVRKLDD 179
Query: 81 SEFR-NAFSRSYVRVRE 96
++FR + +Y+RVRE
Sbjct: 180 TKFRSHEGETAYIRVRE 196
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 63/80 (78%), Gaps = 4/80 (5%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
+RRSD+RVLV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+
Sbjct: 107 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYAL 163
Query: 76 RKLDRSEFR-NAFSRSYVRV 94
RKLD ++FR + SY+RV
Sbjct: 164 RKLDDTKFRSHEGETSYIRV 183
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 63/80 (78%), Gaps = 4/80 (5%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
+RRSD+RVLV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+
Sbjct: 106 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYAL 162
Query: 76 RKLDRSEFR-NAFSRSYVRV 94
RKLD ++FR + SY+RV
Sbjct: 163 RKLDDTKFRSHEGETSYIRV 182
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAV 172
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 173 RKLDNTKFRSHEGETAYIRVK 193
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAV 172
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 173 RKLDNTKFRSHEGETAYIRVK 193
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAV 172
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 173 RKLDNTKFRSHEGETAYIRVK 193
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAV 172
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 173 RKLDNTKFRSHEGETAYIRVK 193
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAV 172
Query: 76 RKLDRSEFR-NAFSRSYVRVR 95
RKLD ++FR + +Y+RV+
Sbjct: 173 RKLDNTKFRSHEGETAYIRVK 193
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 4/80 (5%)
Query: 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75
+RRSD+RVLV+GLP S SWQDLKDHMR AGDVC++ V +D GM V+Y +DM+YA+
Sbjct: 106 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGM---VEYLRKEDMEYAL 162
Query: 76 RKLDRSEFR-NAFSRSYVRV 94
RKLD ++FR + SY+RV
Sbjct: 163 RKLDDTKFRSHEGETSYIRV 182
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77
R++YR++V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ K
Sbjct: 101 RTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEK 159
Query: 78 LDRSEF 83
LD +E
Sbjct: 160 LDGTEV 165
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77
R++YR++V L S SWQDLKD+MR+AG+V ++ + R G+V++ S DMK AI K
Sbjct: 117 RTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRN-EGVVEFASLSDMKTAIEK 175
Query: 78 LDRSEF 83
LD +E
Sbjct: 176 LDDTEL 181
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77
R++YR++V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ K
Sbjct: 107 RTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDK 165
Query: 78 LDRSEF 83
LD +E
Sbjct: 166 LDGTEI 171
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 3 RYSSYSSGGSR-----------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 51
R SY SG S G R++YR++V L S SWQDLKD+MR+AG+V ++
Sbjct: 75 RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYAD 134
Query: 52 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83
+ R G++++ SY DMK A+ KLD +E
Sbjct: 135 AHKGRKN-EGVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77
R+++R++V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ K
Sbjct: 107 RTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDK 165
Query: 78 LDRSEF 83
LD +E
Sbjct: 166 LDGTEI 171
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77
R++ R++V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI K
Sbjct: 105 RTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEK 163
Query: 78 LDRSEF 83
L E
Sbjct: 164 LSGKEI 169
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77
R++ R++V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI K
Sbjct: 105 RTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEK 163
Query: 78 LDRSEF 83
L E
Sbjct: 164 LSGKEI 169
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77
R++ R++V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI K
Sbjct: 105 RTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEK 163
Query: 78 LDRSEF 83
L E
Sbjct: 164 LSGKEI 169
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76
RR+ +R++V L SWQDLKD MR+AG+ F+ R+ G G+V++++ +DM+ A+
Sbjct: 94 RRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALT 152
Query: 77 KLD 79
L+
Sbjct: 153 SLN 155
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 3 RYSSYSSGGSRGVSRR------SDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 55
R ++ GG R S R + +R+++ L + SWQD+KDH+R+ G + +S+ +
Sbjct: 88 REPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHK- 146
Query: 56 RGGMTGIVDYTSYDDMKYAIRKL 78
R IV +TS+DD++ A+ KL
Sbjct: 147 RNVNQAIVCFTSHDDLRDAMNKL 169
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 21 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQV-FRDRGGMTGIVDYTSYDDMKYAIRKL 78
YR+ + LP SWQDLKD R + FS V RD G TG +++ S + + A+ +L
Sbjct: 200 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG-TGALEFPSEEILVEALERL 258
Query: 79 DRSEFR 84
+ EFR
Sbjct: 259 NNIEFR 264
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 20 DYRVLVTGLPSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYA 74
D ++ V LP + WQDLKD R+AG D+ +Q R RG GIV +S + +A
Sbjct: 178 DRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRG--IGIVVMSSMKEAMHA 235
Query: 75 IRKLDRSEF 83
I+ L ++F
Sbjct: 236 IQMLHNTDF 244
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKL 78
RV V L W +LK+ M + G+V ++ G+ I++Y++ ++ + AI+ L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 79 DRSEF 83
+F
Sbjct: 138 SNQKF 142
>sp|Q6GZU4|032R_FRG3G Uncharacterized protein 032R OS=Frog virus 3 (isolate Goorha)
GN=FV3-032R PE=4 SV=1
Length = 629
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 80 RSEFRNAFSRSYVRVREY---DSRRSYSRSPSRSPYYSRSRSRSPY--YSRSRSPS--RS 132
++E A R + RV E RRS +RSP +SP +S S+SP S S+SP+ +S
Sbjct: 24 KAELEEAI-RDHGRVSEARVASPRRSPARSPRKSPAGRKSPSKSPAGRKSPSKSPAGRKS 82
Query: 133 WSYSPRSRSYSPRGKYSRRSPSLSPA------RSASQRSPSGSPPRSFSRSGSFARTWG 185
S SP R + R+SPS SPA +S ++SPS SP R R A+
Sbjct: 83 PSKSPAGRKSPSKSPAGRKSPSKSPAGRKSPSKSPVRKSPSKSPVRKSPRKSPAAKLQA 141
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 22/97 (22%)
Query: 3 RYSSYSSGG----------SRGVSRRSD---------YRVLVTGLPSSASWQDLKDHMRR 43
R SSYS GG RG RR +RV+V L S SWQDLKD +RR
Sbjct: 92 RVSSYSGGGGGGRDRFDRYDRGPPRRESRYGRPYSTRHRVVVENLSSRISWQDLKDQVRR 151
Query: 44 AG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79
G + +++ + ++ + + D+K I K D
Sbjct: 152 QGVEPTYAEAHKRPN--EALLCFATPSDLKRCIEKCD 186
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79
D +V V GLPS A+ Q+L++ R G + V R G V+Y D + A+R LD
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGF-AFVEYDDVRDAEDAVRALD 60
Query: 80 RS 81
S
Sbjct: 61 GS 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,585,953
Number of Sequences: 539616
Number of extensions: 2893307
Number of successful extensions: 22741
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 422
Number of HSP's that attempted gapping in prelim test: 12513
Number of HSP's gapped (non-prelim): 4545
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)