Query 029768
Match_columns 188
No_of_seqs 289 out of 1711
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.9 6.7E-23 1.5E-27 156.3 16.0 79 18-101 8-86 (195)
2 KOG4207 Predicted splicing fac 99.9 1.6E-20 3.5E-25 146.8 14.3 80 14-97 7-90 (256)
3 PLN03134 glycine-rich RNA-bind 99.8 1.5E-18 3.2E-23 131.5 13.4 86 12-101 26-115 (144)
4 PF00076 RRM_1: RNA recognitio 99.7 2.3E-17 4.9E-22 108.4 9.5 67 23-93 1-70 (70)
5 TIGR01659 sex-lethal sex-letha 99.7 9E-17 2E-21 137.5 11.6 79 16-98 103-185 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.4E-16 7.4E-21 133.4 12.8 79 18-100 267-349 (352)
7 KOG0105 Alternative splicing f 99.7 8.6E-17 1.9E-21 124.1 7.8 81 17-101 3-84 (241)
8 PLN03120 nucleic acid binding 99.7 5.3E-16 1.1E-20 126.6 10.6 75 20-99 4-79 (260)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.3E-16 1.4E-20 131.7 11.1 77 19-99 2-82 (352)
10 PLN03121 nucleic acid binding 99.7 1E-15 2.2E-20 123.3 10.7 77 18-99 3-80 (243)
11 KOG0121 Nuclear cap-binding pr 99.6 4.6E-16 1E-20 113.5 7.1 79 17-99 33-115 (153)
12 KOG0130 RNA-binding protein RB 99.6 1E-15 2.3E-20 112.7 7.7 84 14-101 66-153 (170)
13 PF14259 RRM_6: RNA recognitio 99.6 3.4E-15 7.4E-20 98.8 9.6 67 23-93 1-70 (70)
14 KOG0125 Ataxin 2-binding prote 99.6 1.1E-15 2.4E-20 126.7 8.5 80 15-98 91-172 (376)
15 TIGR01659 sex-lethal sex-letha 99.6 3.2E-15 6.9E-20 128.0 10.9 81 18-100 191-275 (346)
16 PLN03213 repressor of silencin 99.6 3.8E-15 8.1E-20 129.3 9.4 77 18-98 8-86 (759)
17 KOG0113 U1 small nuclear ribon 99.6 2.8E-14 6E-19 117.1 13.4 76 18-97 99-178 (335)
18 smart00362 RRM_2 RNA recogniti 99.6 2.2E-14 4.8E-19 93.1 9.3 70 22-95 1-72 (72)
19 TIGR01648 hnRNP-R-Q heterogene 99.6 1.9E-14 4.1E-19 129.8 10.9 73 12-84 50-125 (578)
20 KOG0122 Translation initiation 99.5 5.4E-14 1.2E-18 112.6 10.9 82 15-100 184-269 (270)
21 TIGR01645 half-pint poly-U bin 99.5 3E-14 6.6E-19 128.9 9.8 75 18-96 105-183 (612)
22 KOG0109 RNA-binding protein LA 99.5 1E-14 2.3E-19 119.3 6.0 72 21-100 3-74 (346)
23 TIGR01645 half-pint poly-U bin 99.5 4.2E-14 9.2E-19 128.0 10.4 77 19-99 203-283 (612)
24 KOG0114 Predicted RNA-binding 99.5 4.9E-14 1.1E-18 99.5 8.3 75 18-96 16-91 (124)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.5 8E-14 1.7E-18 124.3 11.7 78 18-99 293-374 (509)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 7.8E-14 1.7E-18 124.3 11.2 76 19-99 274-350 (481)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 5.8E-14 1.3E-18 126.7 10.3 74 19-100 232-307 (578)
28 KOG4212 RNA-binding protein hn 99.5 5.8E-14 1.3E-18 120.4 9.5 81 16-100 40-124 (608)
29 KOG0117 Heterogeneous nuclear 99.5 8.5E-14 1.8E-18 119.5 10.1 82 11-95 74-159 (506)
30 TIGR01622 SF-CC1 splicing fact 99.5 1E-13 2.2E-18 122.2 11.0 75 20-98 186-264 (457)
31 TIGR01622 SF-CC1 splicing fact 99.5 2E-13 4.4E-18 120.3 12.1 76 17-97 86-165 (457)
32 smart00360 RRM RNA recognition 99.5 2.3E-13 5E-18 87.9 8.6 66 25-94 1-70 (71)
33 cd00590 RRM RRM (RNA recogniti 99.5 4.7E-13 1E-17 87.2 9.9 70 22-95 1-73 (74)
34 KOG0149 Predicted RNA-binding 99.5 7.8E-14 1.7E-18 111.2 7.2 74 19-97 11-88 (247)
35 TIGR01628 PABP-1234 polyadenyl 99.5 1.9E-13 4.2E-18 123.7 10.6 73 22-98 2-78 (562)
36 COG0724 RNA-binding proteins ( 99.5 2.5E-13 5.4E-18 108.8 10.0 75 20-98 115-193 (306)
37 TIGR01628 PABP-1234 polyadenyl 99.5 2.4E-13 5.2E-18 123.0 10.9 78 18-99 283-363 (562)
38 KOG0131 Splicing factor 3b, su 99.5 6.3E-14 1.4E-18 107.9 5.8 79 16-98 5-87 (203)
39 KOG4212 RNA-binding protein hn 99.5 1.6E-13 3.5E-18 117.7 7.8 80 12-96 528-607 (608)
40 KOG0105 Alternative splicing f 99.4 2.3E-12 5E-17 99.8 12.0 86 12-100 107-192 (241)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 6.7E-13 1.4E-17 118.3 10.3 72 21-98 3-76 (481)
42 KOG0415 Predicted peptidyl pro 99.4 2.7E-13 5.9E-18 113.7 7.2 76 16-95 235-314 (479)
43 KOG0148 Apoptosis-promoting RN 99.4 9.2E-13 2E-17 107.1 9.4 76 16-97 160-235 (321)
44 KOG0126 Predicted RNA-binding 99.4 2.2E-14 4.7E-19 110.5 -0.4 74 18-95 33-110 (219)
45 KOG0117 Heterogeneous nuclear 99.4 6.2E-13 1.3E-17 114.2 7.6 71 21-99 260-330 (506)
46 KOG0127 Nucleolar protein fibr 99.4 1.8E-12 3.8E-17 113.8 8.3 74 20-97 117-193 (678)
47 KOG0108 mRNA cleavage and poly 99.4 1.5E-12 3.3E-17 113.8 7.6 78 21-102 19-100 (435)
48 KOG0145 RNA-binding protein EL 99.4 3.3E-12 7.1E-17 103.6 8.5 81 17-101 38-122 (360)
49 KOG0111 Cyclophilin-type pepti 99.3 8.1E-13 1.7E-17 104.8 4.7 82 17-102 7-92 (298)
50 TIGR01642 U2AF_lg U2 snRNP aux 99.3 4E-12 8.7E-17 113.4 9.3 70 19-95 174-255 (509)
51 PF13893 RRM_5: RNA recognitio 99.3 8.1E-12 1.8E-16 79.3 8.1 55 37-96 1-55 (56)
52 KOG0144 RNA-binding protein CU 99.3 2.4E-12 5.3E-17 110.2 5.6 82 19-102 123-208 (510)
53 KOG0109 RNA-binding protein LA 99.3 2.3E-12 5E-17 105.7 4.7 70 19-96 77-146 (346)
54 KOG0148 Apoptosis-promoting RN 99.3 6.4E-12 1.4E-16 102.2 7.1 79 18-100 60-142 (321)
55 KOG0106 Alternative splicing f 99.3 6.7E-12 1.5E-16 100.2 7.2 74 13-94 92-165 (216)
56 smart00361 RRM_1 RNA recogniti 99.2 4.2E-11 9.2E-16 79.6 8.0 57 34-94 2-69 (70)
57 KOG0147 Transcriptional coacti 99.2 9.5E-12 2.1E-16 109.2 5.8 69 23-95 281-353 (549)
58 KOG0144 RNA-binding protein CU 99.2 2E-11 4.4E-16 104.7 7.2 84 16-101 30-118 (510)
59 KOG0145 RNA-binding protein EL 99.2 7.6E-11 1.7E-15 95.7 9.5 79 15-97 273-355 (360)
60 KOG0146 RNA-binding protein ET 99.2 2.5E-11 5.4E-16 98.8 5.1 79 17-99 282-364 (371)
61 KOG0123 Polyadenylate-binding 99.2 1.1E-10 2.3E-15 100.9 8.3 70 23-97 79-150 (369)
62 KOG0127 Nucleolar protein fibr 99.1 7.4E-11 1.6E-15 103.8 6.9 78 20-101 5-86 (678)
63 KOG0106 Alternative splicing f 99.1 3.6E-11 7.8E-16 96.0 4.5 71 21-99 2-72 (216)
64 KOG0124 Polypyrimidine tract-b 99.1 3.6E-11 7.9E-16 101.5 4.2 71 21-95 114-188 (544)
65 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.6E-10 3.5E-15 102.3 7.4 75 19-97 404-482 (940)
66 KOG0110 RNA-binding protein (R 99.1 2.6E-10 5.7E-15 102.8 7.8 75 20-98 515-596 (725)
67 KOG0132 RNA polymerase II C-te 99.1 3.1E-10 6.7E-15 103.2 8.1 77 21-103 422-498 (894)
68 KOG0153 Predicted RNA-binding 99.1 6E-10 1.3E-14 93.4 8.5 79 15-99 223-302 (377)
69 KOG0533 RRM motif-containing p 99.1 5.8E-10 1.2E-14 90.8 7.9 77 18-98 81-160 (243)
70 KOG4454 RNA binding protein (R 99.0 2.1E-10 4.5E-15 91.0 2.4 77 15-95 4-82 (267)
71 KOG0116 RasGAP SH3 binding pro 98.9 2.5E-09 5.5E-14 93.3 7.5 78 19-101 287-368 (419)
72 KOG4205 RNA-binding protein mu 98.9 8.9E-10 1.9E-14 92.8 4.5 77 19-100 5-85 (311)
73 KOG4208 Nucleolar RNA-binding 98.9 4.6E-09 1E-13 82.6 7.6 75 13-87 42-121 (214)
74 KOG0131 Splicing factor 3b, su 98.9 2.1E-09 4.7E-14 83.1 5.3 77 17-97 93-174 (203)
75 KOG0151 Predicted splicing reg 98.9 7.7E-09 1.7E-13 93.5 8.2 83 11-97 165-254 (877)
76 KOG0124 Polypyrimidine tract-b 98.9 5.9E-09 1.3E-13 88.3 7.0 71 21-95 211-285 (544)
77 KOG4206 Spliceosomal protein s 98.8 1.3E-08 2.9E-13 81.0 8.1 76 21-100 10-90 (221)
78 KOG4205 RNA-binding protein mu 98.8 6.7E-09 1.4E-13 87.6 5.6 76 19-99 96-175 (311)
79 KOG1548 Transcription elongati 98.8 3.2E-08 6.9E-13 83.2 8.7 79 15-97 129-218 (382)
80 KOG0123 Polyadenylate-binding 98.8 2.4E-08 5.3E-13 86.3 7.8 70 21-98 2-73 (369)
81 PF08777 RRM_3: RNA binding mo 98.7 3.2E-08 6.9E-13 71.1 6.4 60 20-81 1-60 (105)
82 KOG4211 Splicing factor hnRNP- 98.7 7.6E-08 1.6E-12 84.1 8.7 75 17-97 7-83 (510)
83 KOG0110 RNA-binding protein (R 98.7 2.1E-08 4.6E-13 90.7 5.5 81 15-99 608-692 (725)
84 KOG4209 Splicing factor RNPS1, 98.7 2.8E-08 6.1E-13 80.8 5.3 77 17-98 98-178 (231)
85 KOG1457 RNA binding protein (c 98.7 1.5E-07 3.2E-12 75.2 9.1 81 20-101 34-119 (284)
86 KOG4676 Splicing factor, argin 98.6 7.2E-08 1.6E-12 82.3 7.1 63 22-85 9-78 (479)
87 KOG4660 Protein Mei2, essentia 98.6 2.2E-08 4.7E-13 88.5 4.1 67 19-86 74-140 (549)
88 KOG0146 RNA-binding protein ET 98.5 1.3E-07 2.7E-12 77.4 5.4 78 19-98 18-99 (371)
89 KOG1457 RNA binding protein (c 98.5 1.1E-07 2.4E-12 75.9 4.5 69 17-85 207-275 (284)
90 PF11608 Limkain-b1: Limkain b 98.5 8.2E-07 1.8E-11 60.7 7.8 69 21-99 3-76 (90)
91 KOG4211 Splicing factor hnRNP- 98.4 1.3E-06 2.9E-11 76.4 8.5 74 18-96 101-178 (510)
92 KOG1995 Conserved Zn-finger pr 98.4 5.3E-07 1.1E-11 76.2 5.5 75 17-95 63-149 (351)
93 KOG0226 RNA-binding proteins [ 98.3 7.3E-07 1.6E-11 72.4 4.5 75 17-95 187-265 (290)
94 KOG1190 Polypyrimidine tract-b 98.2 5.3E-06 1.2E-10 71.4 8.6 74 20-98 297-371 (492)
95 PF04059 RRM_2: RNA recognitio 98.2 1.4E-05 2.9E-10 56.6 9.2 66 21-86 2-73 (97)
96 PF14605 Nup35_RRM_2: Nup53/35 98.1 7.2E-06 1.6E-10 51.6 5.4 52 21-75 2-53 (53)
97 KOG0120 Splicing factor U2AF, 98.1 2.7E-06 5.9E-11 75.6 3.9 78 17-98 286-367 (500)
98 KOG4206 Spliceosomal protein s 98.0 2.8E-05 6E-10 62.2 8.4 76 17-96 143-218 (221)
99 KOG1456 Heterogeneous nuclear 98.0 8.9E-05 1.9E-09 63.5 10.3 75 18-97 285-360 (494)
100 KOG1365 RNA-binding protein Fu 97.9 1.8E-05 4E-10 67.7 5.9 78 15-96 275-358 (508)
101 KOG4307 RNA binding protein RB 97.9 5.3E-05 1.1E-09 69.2 8.7 70 22-95 869-942 (944)
102 COG5175 MOT2 Transcriptional r 97.9 3E-05 6.6E-10 65.5 6.6 75 16-94 110-197 (480)
103 KOG4210 Nuclear localization s 97.9 8.7E-06 1.9E-10 68.2 3.3 80 19-103 183-267 (285)
104 KOG3152 TBP-binding protein, a 97.9 6.8E-06 1.5E-10 66.8 2.4 68 19-86 73-156 (278)
105 KOG4676 Splicing factor, argin 97.8 4.8E-06 1.1E-10 71.3 0.6 63 22-85 153-215 (479)
106 KOG0147 Transcriptional coacti 97.8 8.6E-06 1.9E-10 72.2 1.5 75 18-97 177-255 (549)
107 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00022 4.7E-09 50.7 8.3 66 19-86 5-81 (100)
108 KOG1855 Predicted RNA-binding 97.7 3.4E-05 7.3E-10 66.9 4.3 64 18-81 229-309 (484)
109 KOG0129 Predicted RNA-binding 97.7 0.00013 2.9E-09 64.5 7.4 76 16-96 366-450 (520)
110 KOG2314 Translation initiation 97.6 0.0002 4.4E-09 64.1 7.3 75 18-95 56-139 (698)
111 KOG1190 Polypyrimidine tract-b 97.6 0.00019 4.1E-09 62.0 6.4 75 19-96 413-487 (492)
112 PF10309 DUF2414: Protein of u 97.5 0.00084 1.8E-08 43.5 7.1 55 20-78 5-62 (62)
113 KOG1548 Transcription elongati 97.5 0.00059 1.3E-08 57.9 7.9 77 17-97 262-349 (382)
114 KOG4307 RNA binding protein RB 97.4 0.00017 3.7E-09 66.0 3.8 77 15-95 429-509 (944)
115 KOG1456 Heterogeneous nuclear 97.4 0.0013 2.8E-08 56.5 8.8 72 26-101 128-200 (494)
116 KOG0129 Predicted RNA-binding 97.2 0.00054 1.2E-08 60.7 5.6 58 18-76 257-324 (520)
117 KOG0120 Splicing factor U2AF, 97.2 0.00092 2E-08 59.8 6.9 46 40-85 429-481 (500)
118 PF08952 DUF1866: Domain of un 97.2 0.0022 4.9E-08 48.4 8.0 53 36-97 52-104 (146)
119 PF08675 RNA_bind: RNA binding 97.1 0.0026 5.7E-08 43.5 6.4 58 17-79 6-63 (87)
120 KOG1996 mRNA splicing factor [ 97.1 0.0023 5.1E-08 53.3 7.1 53 34-86 300-357 (378)
121 KOG2135 Proteins containing th 97.0 0.00048 1E-08 60.6 3.2 82 11-99 363-445 (526)
122 KOG4849 mRNA cleavage factor I 97.0 0.00059 1.3E-08 58.1 3.5 69 18-86 78-152 (498)
123 KOG1365 RNA-binding protein Fu 97.0 0.0034 7.3E-08 54.2 7.5 70 20-94 161-237 (508)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 96.9 0.0027 5.8E-08 49.6 6.4 70 18-87 5-84 (176)
125 KOG2193 IGF-II mRNA-binding pr 96.9 0.00084 1.8E-08 58.5 3.2 70 21-96 2-72 (584)
126 KOG2202 U2 snRNP splicing fact 96.8 0.00074 1.6E-08 55.1 2.3 57 35-95 83-143 (260)
127 KOG2416 Acinus (induces apopto 96.8 0.00086 1.9E-08 60.5 2.7 68 16-85 440-508 (718)
128 KOG2591 c-Mpl binding protein, 96.7 0.0033 7.1E-08 56.5 5.9 60 16-78 171-232 (684)
129 KOG0115 RNA-binding protein p5 96.6 0.0025 5.3E-08 52.2 3.6 75 21-95 32-109 (275)
130 PF07576 BRAP2: BRCA1-associat 96.5 0.028 6.1E-07 40.6 8.7 68 19-86 12-82 (110)
131 KOG0112 Large RNA-binding prot 96.5 0.0039 8.5E-08 58.7 4.9 76 16-95 451-526 (975)
132 KOG2253 U1 snRNP complex, subu 96.3 0.0024 5.3E-08 58.2 2.6 66 16-86 36-101 (668)
133 PF03880 DbpA: DbpA RNA bindin 96.3 0.021 4.7E-07 38.0 6.4 66 22-96 2-73 (74)
134 KOG4285 Mitotic phosphoprotein 96.2 0.019 4E-07 48.2 7.0 70 20-96 197-266 (350)
135 KOG0128 RNA-binding protein SA 96.1 0.0021 4.7E-08 60.0 1.1 66 20-85 736-804 (881)
136 KOG0112 Large RNA-binding prot 96.1 0.0011 2.4E-08 62.2 -1.0 65 20-84 372-439 (975)
137 PF11767 SET_assoc: Histone ly 95.9 0.058 1.3E-06 35.3 7.0 50 31-85 11-60 (66)
138 KOG2068 MOT2 transcription fac 95.9 0.0045 9.8E-08 52.4 1.9 69 18-86 75-153 (327)
139 KOG0128 RNA-binding protein SA 95.5 0.00072 1.6E-08 63.1 -4.5 65 20-85 667-735 (881)
140 KOG0804 Cytoplasmic Zn-finger 94.7 0.14 3E-06 45.3 7.3 66 20-85 74-142 (493)
141 PF15023 DUF4523: Protein of u 94.7 0.12 2.6E-06 39.1 6.0 61 17-80 83-147 (166)
142 PF04847 Calcipressin: Calcipr 94.1 0.2 4.2E-06 39.5 6.5 59 33-97 8-68 (184)
143 KOG4207 Predicted splicing fac 94.0 0.36 7.7E-06 38.7 7.8 26 60-85 60-87 (256)
144 KOG2318 Uncharacterized conser 93.7 0.25 5.4E-06 44.9 7.1 70 17-86 171-296 (650)
145 KOG4574 RNA-binding protein (c 92.8 0.052 1.1E-06 51.2 1.4 73 22-98 300-372 (1007)
146 KOG4660 Protein Mei2, essentia 91.2 0.28 6.1E-06 44.3 4.1 25 60-84 433-457 (549)
147 KOG0107 Alternative splicing f 90.9 2.6 5.6E-05 33.0 8.6 11 21-31 38-48 (195)
148 KOG4410 5-formyltetrahydrofola 89.6 1.6 3.4E-05 36.7 6.9 59 19-79 329-395 (396)
149 KOG4210 Nuclear localization s 89.2 0.25 5.4E-06 41.5 2.0 68 18-85 86-157 (285)
150 PF03468 XS: XS domain; Inter 87.0 1.6 3.5E-05 31.7 4.9 54 22-76 10-75 (116)
151 KOG2193 IGF-II mRNA-binding pr 86.2 0.036 7.8E-07 48.6 -4.8 73 19-95 79-152 (584)
152 PRK14548 50S ribosomal protein 86.2 3.6 7.9E-05 28.2 6.0 56 23-78 23-81 (84)
153 TIGR03636 L23_arch archaeal ri 86.1 4 8.6E-05 27.5 6.1 57 22-78 15-74 (77)
154 KOG0835 Cyclin L [General func 85.3 1.3 2.7E-05 37.9 4.1 10 31-40 212-221 (367)
155 KOG1295 Nonsense-mediated deca 85.1 1.3 2.7E-05 38.5 4.0 68 18-85 5-79 (376)
156 KOG4483 Uncharacterized conser 80.6 3 6.6E-05 36.6 4.6 56 19-76 390-445 (528)
157 PF08544 GHMP_kinases_C: GHMP 78.5 11 0.00025 24.6 6.2 44 35-79 37-80 (85)
158 KOG2295 C2H2 Zn-finger protein 78.0 0.36 7.8E-06 43.8 -1.8 67 20-86 231-301 (648)
159 PTZ00191 60S ribosomal protein 77.4 9 0.00019 29.0 5.8 56 23-78 84-142 (145)
160 COG0724 RNA-binding proteins ( 76.1 4.4 9.5E-05 31.7 4.2 43 16-58 221-263 (306)
161 PF00403 HMA: Heavy-metal-asso 76.1 16 0.00034 22.6 6.2 55 22-78 1-59 (62)
162 PF07237 DUF1428: Protein of u 74.0 16 0.00035 26.0 6.1 43 36-78 24-85 (103)
163 smart00596 PRE_C2HC PRE_C2HC d 73.3 6.3 0.00014 26.0 3.6 58 35-99 2-64 (69)
164 cd06405 PB1_Mekk2_3 The PB1 do 73.3 25 0.00054 23.6 7.3 52 27-82 15-67 (79)
165 PF15513 DUF4651: Domain of un 73.1 8.2 0.00018 24.9 4.0 19 34-52 8-26 (62)
166 KOG4008 rRNA processing protei 72.9 2.1 4.5E-05 35.0 1.5 32 19-50 39-70 (261)
167 PRK10905 cell division protein 72.2 23 0.0005 30.3 7.6 67 11-80 238-308 (328)
168 PRK11901 hypothetical protein; 70.6 22 0.00047 30.5 7.1 63 15-81 240-307 (327)
169 PF02426 MIase: Muconolactone 69.5 33 0.00072 23.8 6.7 52 27-78 10-71 (91)
170 COG0150 PurM Phosphoribosylami 69.3 3.7 7.9E-05 35.4 2.3 59 21-81 264-322 (345)
171 KOG4019 Calcineurin-mediated s 68.6 4.1 9E-05 32.0 2.2 72 21-97 11-87 (193)
172 PF10567 Nab6_mRNP_bdg: RNA-re 68.1 14 0.00029 31.3 5.3 53 22-74 17-80 (309)
173 COG3254 Uncharacterized conser 67.3 21 0.00046 25.5 5.4 42 33-75 25-68 (105)
174 PF09902 DUF2129: Uncharacteri 66.9 12 0.00027 24.7 3.9 53 20-84 3-55 (71)
175 KOG2891 Surface glycoprotein [ 66.5 2.1 4.6E-05 35.9 0.3 37 18-54 147-195 (445)
176 cd00027 BRCT Breast Cancer Sup 66.1 21 0.00046 21.5 5.0 28 20-47 1-28 (72)
177 PRK02886 hypothetical protein; 66.0 12 0.00026 25.9 3.8 55 17-83 4-58 (87)
178 cd04904 ACT_AAAH ACT domain of 64.9 24 0.00052 23.0 5.2 48 33-80 13-65 (74)
179 PF07530 PRE_C2HC: Associated 63.5 16 0.00034 23.9 4.0 58 35-99 2-64 (68)
180 PF14026 DUF4242: Protein of u 63.2 42 0.00091 22.3 8.7 61 23-84 3-72 (77)
181 smart00666 PB1 PB1 domain. Pho 61.9 42 0.00091 21.9 7.9 55 23-79 12-69 (81)
182 COG5638 Uncharacterized conser 61.9 29 0.00064 30.8 6.4 27 60-86 260-286 (622)
183 KOG0156 Cytochrome P450 CYP2 s 60.2 23 0.0005 32.1 5.7 65 15-86 28-95 (489)
184 COG5353 Uncharacterized protei 59.0 53 0.0011 25.1 6.5 50 21-70 88-154 (161)
185 cd04905 ACT_CM-PDT C-terminal 58.8 44 0.00095 21.8 5.7 48 33-80 14-68 (80)
186 PF02714 DUF221: Domain of unk 58.6 12 0.00026 31.5 3.5 23 61-83 1-23 (325)
187 KOG4454 RNA binding protein (R 58.2 2 4.3E-05 34.9 -1.3 65 21-85 81-152 (267)
188 PF00564 PB1: PB1 domain; Int 57.8 50 0.0011 21.5 6.4 54 26-81 16-72 (84)
189 PF08734 GYD: GYD domain; Int 57.4 49 0.0011 22.7 5.8 44 33-76 21-65 (91)
190 PRK02302 hypothetical protein; 56.7 22 0.00047 24.7 3.8 55 17-83 6-60 (89)
191 TIGR01033 DNA-binding regulato 56.6 49 0.0011 27.0 6.6 46 18-66 92-143 (238)
192 COG0217 Uncharacterized conser 55.4 70 0.0015 26.3 7.2 54 18-74 92-155 (241)
193 KOG4365 Uncharacterized conser 53.6 2 4.3E-05 38.2 -2.1 64 21-85 4-71 (572)
194 KOG2187 tRNA uracil-5-methyltr 53.4 11 0.00024 34.4 2.4 67 26-97 31-98 (534)
195 PF00276 Ribosomal_L23: Riboso 52.9 36 0.00077 23.4 4.5 47 23-69 22-84 (91)
196 cd06410 PB1_UP2 Uncharacterize 52.6 78 0.0017 22.1 7.2 71 11-81 6-85 (97)
197 PF11411 DNA_ligase_IV: DNA li 52.1 12 0.00025 21.5 1.6 17 30-46 19-35 (36)
198 cd05992 PB1 The PB1 domain is 52.1 63 0.0014 20.9 5.9 51 27-79 15-69 (81)
199 PF14893 PNMA: PNMA 50.8 15 0.00033 31.6 2.9 49 20-68 18-72 (331)
200 COG5507 Uncharacterized conser 50.3 23 0.00049 25.1 3.1 39 40-78 29-86 (117)
201 cd04908 ACT_Bt0572_1 N-termina 50.0 61 0.0013 20.2 8.8 49 33-82 14-63 (66)
202 cd04880 ACT_AAAH-PDT-like ACT 50.0 66 0.0014 20.5 5.9 48 33-80 12-66 (75)
203 PRK00110 hypothetical protein; 49.6 73 0.0016 26.2 6.6 56 18-76 92-156 (245)
204 COG0002 ArgC Acetylglutamate s 49.5 34 0.00074 29.7 4.8 43 27-69 252-304 (349)
205 PF13193 AMP-binding_C: AMP-bi 48.8 65 0.0014 20.5 5.1 48 36-84 1-54 (73)
206 cd04879 ACT_3PGDH-like ACT_3PG 47.6 62 0.0013 19.5 4.9 55 23-78 2-59 (71)
207 PF01823 MACPF: MAC/Perforin d 47.1 20 0.00043 27.8 2.9 31 25-55 53-86 (212)
208 PF11491 DUF3213: Protein of u 47.1 44 0.00094 22.9 4.0 66 24-96 4-73 (88)
209 cd04902 ACT_3PGDH-xct C-termin 46.6 70 0.0015 19.9 6.0 58 24-81 3-65 (73)
210 COG0030 KsgA Dimethyladenosine 46.6 35 0.00075 28.4 4.3 28 20-47 95-122 (259)
211 PF01037 AsnC_trans_reg: AsnC 46.6 72 0.0016 20.0 6.9 45 33-77 11-55 (74)
212 PRK05738 rplW 50S ribosomal pr 45.4 87 0.0019 21.6 5.5 34 22-55 21-56 (92)
213 PF00398 RrnaAD: Ribosomal RNA 45.4 23 0.00051 29.0 3.1 30 19-48 96-127 (262)
214 COG5227 SMT3 Ubiquitin-like pr 44.1 64 0.0014 22.5 4.5 63 19-82 33-102 (103)
215 PF09707 Cas_Cas2CT1978: CRISP 43.9 53 0.0012 22.5 4.2 43 22-65 27-71 (86)
216 PF05036 SPOR: Sporulation rel 43.8 9.3 0.0002 24.3 0.4 61 19-79 3-65 (76)
217 cd04931 ACT_PAH ACT domain of 43.6 94 0.002 21.3 5.5 48 33-80 27-80 (90)
218 cd06408 PB1_NoxR The PB1 domai 43.2 92 0.002 21.4 5.3 54 23-78 13-67 (86)
219 PF01842 ACT: ACT domain; Int 41.5 76 0.0017 19.1 4.5 47 32-78 12-61 (66)
220 PRK12450 foldase protein PrsA; 41.4 57 0.0012 27.5 4.9 44 31-84 132-177 (309)
221 PF07292 NID: Nmi/IFP 35 domai 41.1 16 0.00034 25.3 1.2 23 19-41 51-73 (88)
222 PF13820 Nucleic_acid_bd: Puta 40.6 46 0.001 25.3 3.8 61 20-80 4-67 (149)
223 cd04883 ACT_AcuB C-terminal AC 40.5 90 0.002 19.4 8.5 51 33-84 14-69 (72)
224 CHL00123 rps6 ribosomal protei 40.4 78 0.0017 22.0 4.7 50 28-77 14-81 (97)
225 PRK11230 glycolate oxidase sub 40.1 93 0.002 28.2 6.4 46 34-79 203-255 (499)
226 CHL00030 rpl23 ribosomal prote 39.4 1.3E+02 0.0028 20.9 5.6 35 22-56 20-56 (93)
227 TIGR01873 cas_CT1978 CRISPR-as 39.4 35 0.00077 23.5 2.7 45 22-67 27-74 (87)
228 PF08156 NOP5NT: NOP5NT (NUC12 39.3 9.3 0.0002 24.9 -0.1 54 19-79 9-65 (67)
229 PF14111 DUF4283: Domain of un 39.2 23 0.00049 26.0 2.0 34 23-56 107-141 (153)
230 KOG0862 Synaptobrevin/VAMP-lik 39.2 32 0.0007 27.7 2.9 9 60-68 111-119 (216)
231 COG2608 CopZ Copper chaperone 39.0 1.1E+02 0.0023 19.8 6.9 56 21-78 4-63 (71)
232 COG1207 GlmU N-acetylglucosami 38.7 1.1E+02 0.0024 27.5 6.3 64 19-82 96-175 (460)
233 TIGR00755 ksgA dimethyladenosi 37.9 41 0.00088 27.3 3.4 24 22-45 96-119 (253)
234 PRK00274 ksgA 16S ribosomal RN 37.6 48 0.001 27.3 3.8 22 22-43 107-128 (272)
235 cd06396 PB1_NBR1 The PB1 domai 37.4 1.2E+02 0.0027 20.5 5.1 51 27-79 15-68 (81)
236 cd04889 ACT_PDH-BS-like C-term 37.3 91 0.002 18.5 5.7 41 35-75 13-55 (56)
237 KOG4840 Predicted hydrolases o 37.3 97 0.0021 25.6 5.3 63 20-83 37-105 (299)
238 PF04127 DFP: DNA / pantothena 37.2 1.2E+02 0.0026 23.7 5.8 56 23-78 21-79 (185)
239 PF02994 Transposase_22: L1 tr 37.1 91 0.002 27.2 5.6 73 21-97 191-287 (370)
240 cd06406 PB1_P67 A PB1 domain i 37.0 1E+02 0.0022 20.9 4.6 57 24-82 13-72 (80)
241 PRK05772 translation initiatio 36.5 88 0.0019 27.3 5.4 47 32-78 3-56 (363)
242 cd04929 ACT_TPH ACT domain of 36.2 1.2E+02 0.0027 19.8 6.1 49 33-81 13-66 (74)
243 TIGR03221 muco_delta muconolac 35.9 1.5E+02 0.0032 20.6 6.8 64 27-96 9-82 (90)
244 PRK04199 rpl10e 50S ribosomal 35.6 2.1E+02 0.0046 22.3 7.5 72 18-95 79-165 (172)
245 PF08442 ATP-grasp_2: ATP-gras 35.5 81 0.0018 25.0 4.7 53 32-84 25-81 (202)
246 PF03389 MobA_MobL: MobA/MobL 35.5 1.1E+02 0.0023 24.6 5.4 47 21-67 68-123 (216)
247 cd04878 ACT_AHAS N-terminal AC 35.3 1E+02 0.0022 18.6 6.9 47 33-79 13-63 (72)
248 PRK12864 YciI-like protein; Re 35.0 1.1E+02 0.0023 20.8 4.7 40 45-85 36-75 (89)
249 PF14581 SseB_C: SseB protein 34.9 28 0.0006 24.4 1.8 57 19-76 4-67 (108)
250 PLN00168 Cytochrome P450; Prov 34.6 1.2E+02 0.0026 27.2 6.2 51 22-77 43-98 (519)
251 PTZ00338 dimethyladenosine tra 34.2 51 0.0011 27.7 3.5 23 21-43 102-124 (294)
252 PF02829 3H: 3H domain; Inter 33.9 1.7E+02 0.0036 20.5 5.7 51 31-81 8-59 (98)
253 PTZ00136 eukaryotic translatio 33.9 1.8E+02 0.004 24.0 6.6 54 22-78 61-132 (247)
254 COG0079 HisC Histidinol-phosph 33.8 57 0.0012 28.2 3.8 48 20-74 146-197 (356)
255 smart00650 rADc Ribosomal RNA 33.0 76 0.0017 23.8 4.1 23 21-43 78-100 (169)
256 PRK11634 ATP-dependent RNA hel 33.0 1.2E+02 0.0026 28.5 6.0 67 22-98 488-561 (629)
257 smart00457 MACPF membrane-atta 32.6 1E+02 0.0022 23.9 4.8 22 25-46 30-51 (194)
258 PRK08559 nusG transcription an 32.6 1.5E+02 0.0033 22.2 5.6 34 47-81 36-69 (153)
259 PRK00464 nrdR transcriptional 32.5 80 0.0017 24.1 4.0 42 30-79 101-148 (154)
260 KOG1196 Predicted NAD-dependen 32.4 1.3E+02 0.0028 25.9 5.5 74 18-97 221-312 (343)
261 cd04930 ACT_TH ACT domain of t 32.2 1.6E+02 0.0034 21.2 5.4 48 33-80 54-106 (115)
262 PLN00110 flavonoid 3',5'-hydro 32.2 1.3E+02 0.0027 27.0 5.9 49 24-77 41-91 (504)
263 PRK04405 prsA peptidylprolyl i 32.1 1E+02 0.0022 26.0 4.9 40 31-80 128-167 (298)
264 cd04917 ACT_AKiii-LysC-EC_2 AC 32.0 1.3E+02 0.0027 18.5 4.6 23 61-83 41-63 (64)
265 PRK12378 hypothetical protein; 31.6 1.8E+02 0.0039 23.7 6.2 56 18-76 89-153 (235)
266 KOG2146 Splicing coactivator S 31.4 1.7E+02 0.0037 24.9 6.0 8 60-67 88-95 (354)
267 PF01696 Adeno_E1B_55K: Adenov 31.4 88 0.0019 27.6 4.5 52 27-83 16-69 (386)
268 PF11019 DUF2608: Protein of u 31.1 99 0.0022 25.3 4.7 60 15-85 148-207 (252)
269 cd04894 ACT_ACR-like_1 ACT dom 31.1 74 0.0016 20.7 3.0 31 34-66 14-45 (69)
270 PF05336 DUF718: Domain of unk 31.1 1.4E+02 0.003 21.0 4.9 41 33-74 24-66 (106)
271 cd00412 pyrophosphatase Inorga 31.0 62 0.0013 24.7 3.2 40 32-78 114-153 (155)
272 PF11823 DUF3343: Protein of u 30.9 67 0.0014 20.8 3.0 26 60-85 3-28 (73)
273 PLN02373 soluble inorganic pyr 30.3 64 0.0014 25.5 3.3 38 33-78 137-174 (188)
274 KOG2855 Ribokinase [Carbohydra 30.1 68 0.0015 27.7 3.6 48 16-63 57-105 (330)
275 PF14111 DUF4283: Domain of un 30.0 24 0.00052 25.9 0.8 68 23-96 18-88 (153)
276 PF12993 DUF3877: Domain of un 29.9 93 0.002 24.3 4.0 21 30-50 107-127 (175)
277 cd06398 PB1_Joka2 The PB1 doma 29.7 1.9E+02 0.0041 19.9 6.1 46 31-78 24-73 (91)
278 PF06014 DUF910: Bacterial pro 29.7 43 0.00094 21.6 1.8 18 33-50 3-20 (62)
279 PF06130 PduL: Propanediol uti 29.4 1.7E+02 0.0037 19.2 5.9 30 23-52 4-33 (71)
280 TIGR00387 glcD glycolate oxida 29.2 1.5E+02 0.0033 26.0 5.8 49 31-79 143-198 (413)
281 cd06404 PB1_aPKC PB1 domain is 29.2 1.9E+02 0.0041 19.7 7.5 54 21-78 9-68 (83)
282 PLN02757 sirohydrochlorine fer 29.0 63 0.0014 24.5 3.0 53 20-78 14-67 (154)
283 PRK00642 inorganic pyrophospha 28.6 64 0.0014 25.8 3.0 41 33-79 156-197 (205)
284 PF12419 DUF3670: SNF2 Helicas 28.3 1.8E+02 0.0038 21.5 5.2 52 19-81 73-124 (141)
285 cd04881 ACT_HSDH-Hom ACT_HSDH_ 27.8 1.5E+02 0.0033 18.2 7.6 50 32-81 12-66 (79)
286 cd04903 ACT_LSD C-terminal ACT 27.6 1.4E+02 0.0031 17.9 7.0 46 32-78 11-59 (71)
287 cd04882 ACT_Bt0572_2 C-termina 27.5 1.4E+02 0.0031 17.8 6.2 43 35-77 14-59 (65)
288 PLN02707 Soluble inorganic pyr 27.3 41 0.00089 28.1 1.8 41 34-80 207-249 (267)
289 COG5584 Predicted small secret 27.2 67 0.0015 22.6 2.5 31 27-57 29-59 (103)
290 smart00115 CASc Caspase, inter 27.0 1.5E+02 0.0033 23.9 5.1 30 17-46 6-44 (241)
291 PLN02655 ent-kaurene oxidase 26.9 1.6E+02 0.0035 25.9 5.6 49 24-77 9-60 (466)
292 PF07876 Dabb: Stress responsi 26.6 2E+02 0.0043 19.0 7.1 53 23-75 4-71 (97)
293 PF12829 Mhr1: Transcriptional 25.8 1.4E+02 0.003 20.8 3.9 52 28-79 20-72 (91)
294 PF12385 Peptidase_C70: Papain 25.7 1.3E+02 0.0028 23.3 4.0 23 28-50 90-114 (166)
295 TIGR02542 B_forsyth_147 Bacter 25.7 34 0.00074 25.0 0.9 41 28-68 82-129 (145)
296 PF02799 NMT_C: Myristoyl-CoA: 25.6 81 0.0018 25.0 3.1 30 28-57 55-84 (190)
297 smart00292 BRCT breast cancer 25.5 1.6E+02 0.0035 17.8 4.7 33 18-50 3-35 (80)
298 KOG3432 Vacuolar H+-ATPase V1 25.4 1.8E+02 0.0039 21.0 4.5 23 30-52 43-65 (121)
299 COG4471 Uncharacterized protei 25.4 1.7E+02 0.0036 20.3 4.1 38 41-83 22-59 (90)
300 PF09702 Cas_Csa5: CRISPR-asso 25.3 86 0.0019 22.3 2.8 24 17-43 61-84 (105)
301 PRK00343 ipk 4-diphosphocytidy 25.2 1.6E+02 0.0035 24.3 5.0 20 60-79 241-260 (271)
302 PF03439 Spt5-NGN: Early trans 25.2 1.5E+02 0.0032 19.9 4.0 37 46-83 33-69 (84)
303 PRK11558 putative ssRNA endonu 25.1 1.3E+02 0.0028 21.2 3.6 45 22-67 29-75 (97)
304 COG0045 SucC Succinyl-CoA synt 25.0 3.9E+02 0.0084 23.6 7.3 55 32-86 26-88 (387)
305 PLN03018 homomethionine N-hydr 24.9 2.1E+02 0.0045 26.0 6.0 58 14-77 41-103 (534)
306 COG5470 Uncharacterized conser 24.8 1.3E+02 0.0029 21.1 3.7 16 60-75 55-70 (96)
307 PF15063 TC1: Thyroid cancer p 24.5 49 0.0011 22.2 1.4 50 21-78 26-78 (79)
308 PF01071 GARS_A: Phosphoribosy 24.4 1.8E+02 0.0038 23.1 4.8 47 32-79 24-71 (194)
309 PRK01326 prsA foldase protein 24.1 59 0.0013 27.4 2.2 44 31-84 129-174 (310)
310 PF01076 Mob_Pre: Plasmid reco 23.8 1.7E+02 0.0038 22.8 4.7 37 31-67 94-143 (196)
311 PF13689 DUF4154: Domain of un 23.7 1.3E+02 0.0029 22.1 3.8 32 60-96 28-59 (145)
312 PF12091 DUF3567: Protein of u 23.7 76 0.0016 21.8 2.2 41 52-95 3-43 (85)
313 PF09383 NIL: NIL domain; Int 23.5 2E+02 0.0044 18.4 4.3 52 31-82 13-70 (76)
314 KOG1349 Gpi-anchor transamidas 23.4 2.1E+02 0.0046 24.0 5.2 61 22-82 100-178 (309)
315 KOG3580 Tight junction protein 23.4 4.3E+02 0.0094 25.1 7.6 9 19-27 38-46 (1027)
316 KOG2603 Oligosaccharyltransfer 23.1 58 0.0013 27.9 1.9 66 15-81 57-127 (331)
317 PLN02235 ATP citrate (pro-S)-l 22.9 4E+02 0.0086 23.9 7.2 52 32-83 35-93 (423)
318 PF08002 DUF1697: Protein of u 22.8 3.2E+02 0.0069 20.1 6.5 55 21-77 4-62 (137)
319 PF13535 ATP-grasp_4: ATP-gras 22.6 1.6E+02 0.0034 21.7 4.2 47 32-79 26-72 (184)
320 PRK12866 YciI-like protein; Re 22.4 2.5E+02 0.0055 19.3 4.8 40 45-85 35-75 (97)
321 COG1058 CinA Predicted nucleot 22.4 2.6E+02 0.0057 23.2 5.6 61 19-81 179-245 (255)
322 PRK06737 acetolactate synthase 22.3 2.5E+02 0.0054 18.7 6.4 59 21-81 5-67 (76)
323 PF01782 RimM: RimM N-terminal 21.9 1.5E+02 0.0032 19.5 3.5 24 60-84 56-79 (84)
324 KOG1150 Predicted molecular ch 21.7 1.3E+02 0.0027 24.4 3.4 28 26-57 59-86 (250)
325 PF02222 ATP-grasp: ATP-grasp 21.7 1.3E+02 0.0029 23.1 3.6 48 32-80 15-63 (172)
326 PRK00650 4-diphosphocytidyl-2- 21.6 1.8E+02 0.0039 24.5 4.6 19 60-78 235-254 (288)
327 PHA01632 hypothetical protein 21.5 99 0.0022 19.5 2.2 21 23-43 19-39 (64)
328 smart00195 DSPc Dual specifici 21.5 3E+02 0.0064 19.5 5.3 27 22-50 7-33 (138)
329 KOG0226 RNA-binding proteins [ 21.5 31 0.00067 28.7 -0.0 71 15-85 91-167 (290)
330 PF06919 Phage_T4_Gp30_7: Phag 21.4 1.4E+02 0.003 21.4 3.2 23 43-67 28-50 (121)
331 TIGR00279 L10e ribosomal prote 21.4 4E+02 0.0087 20.8 7.7 71 19-95 80-165 (172)
332 PF01709 Transcrip_reg: Transc 21.4 29 0.00063 28.3 -0.2 29 18-46 88-118 (234)
333 PF09180 ProRS-C_1: Prolyl-tRN 21.4 2.2E+02 0.0048 18.3 4.1 26 60-85 13-38 (68)
334 PHA03075 glutaredoxin-like pro 21.3 3.4E+02 0.0073 19.9 5.4 31 36-66 58-89 (123)
335 PLN00066 PsbP domain-containin 21.3 3.5E+02 0.0076 22.6 6.1 11 19-29 148-158 (262)
336 KOG1232 Proteins containing th 21.1 1.2E+02 0.0027 26.9 3.5 49 27-75 231-286 (511)
337 KOG4357 Uncharacterized conser 21.1 3.6E+02 0.0077 20.1 6.1 64 20-85 66-140 (164)
338 PRK08818 prephenate dehydrogen 21.1 1.9E+02 0.0042 25.2 4.8 51 21-72 296-350 (370)
339 PF00719 Pyrophosphatase: Inor 21.0 1.6E+02 0.0035 22.4 3.8 38 34-78 113-150 (156)
340 cd04928 ACT_TyrKc Uncharacteri 20.8 2.5E+02 0.0054 18.2 7.7 43 22-65 3-46 (68)
341 PF02938 GAD: GAD domain; Int 20.7 2.8E+02 0.0062 18.8 5.0 22 24-45 53-74 (95)
342 COG1691 NCAIR mutase (PurE)-re 20.7 1E+02 0.0023 25.3 2.8 45 34-78 21-69 (254)
343 KOG3671 Actin regulatory prote 20.7 1.8E+02 0.004 26.6 4.6 50 31-81 89-138 (569)
344 KOG2888 Putative RNA binding p 20.6 60 0.0013 28.1 1.5 8 35-42 172-179 (453)
345 PRK13790 phosphoribosylamine-- 20.5 3.9E+02 0.0085 23.0 6.7 45 33-79 90-135 (379)
346 PF00533 BRCT: BRCA1 C Terminu 20.4 1.8E+02 0.0038 18.1 3.5 33 15-48 3-35 (78)
347 PF08206 OB_RNB: Ribonuclease 20.4 36 0.00079 21.1 0.1 26 60-85 10-36 (58)
348 PLN02971 tryptophan N-hydroxyl 20.4 1.9E+02 0.0042 26.1 4.9 56 24-85 67-127 (543)
349 KOG2854 Possible pfkB family c 20.1 1.3E+02 0.0029 26.0 3.5 21 60-81 214-234 (343)
350 COG4010 Uncharacterized protei 20.0 3.2E+02 0.0068 20.9 5.1 46 27-78 118-163 (170)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.7e-23 Score=156.30 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=73.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
..+++||||||+..+++.||+.+|..||+|..|+|..++.+ ||||||+++.||++|+..|||.+|+| ..|+|+..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPG-fAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPG-FAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCC-ceEEeccCcccHHHHHhhcCCccccC----ceEEEEee
Confidence 45799999999999999999999999999999999998777 99999999999999999999999999 69999876
Q ss_pred cCCc
Q 029768 98 DSRR 101 (188)
Q Consensus 98 ~~~r 101 (188)
....
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 5544
No 2
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.86 E-value=1.6e-20 Score=146.79 Aligned_cols=80 Identities=20% Similarity=0.160 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+|...+-+.|.|-||.+.|+.++|..+|++||.|.+|.|..|.-+. ||||.|.+..||++|++.|||.+|+|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg---- 82 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG---- 82 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----
Confidence 5667778899999999999999999999999999999999997654 99999999999999999999999999
Q ss_pred eEEEEeec
Q 029768 90 SYVRVREY 97 (188)
Q Consensus 90 r~I~V~~~ 97 (188)
+.|.|+.+
T Consensus 83 RelrVq~a 90 (256)
T KOG4207|consen 83 RELRVQMA 90 (256)
T ss_pred ceeeehhh
Confidence 69988744
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.5e-18 Score=131.53 Aligned_cols=86 Identities=24% Similarity=0.335 Sum_probs=75.7
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
..+.......+|||+|||+++++++|+++|.+||+|+.|.|+.+..+ +||||+|++.++|+.||+.||+.+|+|
T Consensus 26 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-- 103 (144)
T PLN03134 26 MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG-- 103 (144)
T ss_pred ccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--
Confidence 33444566789999999999999999999999999999999988653 299999999999999999999999999
Q ss_pred ceeEEEEeeccCCc
Q 029768 88 SRSYVRVREYDSRR 101 (188)
Q Consensus 88 ~~r~I~V~~~~~~r 101 (188)
+.|+|.++....
T Consensus 104 --r~l~V~~a~~~~ 115 (144)
T PLN03134 104 --RHIRVNPANDRP 115 (144)
T ss_pred --EEEEEEeCCcCC
Confidence 799998876544
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=2.3e-17 Score=108.45 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=61.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
|||+|||+++++++|+++|.+||.|..+.+..+..+ ++|||+|++.++|+.||+.|||..|.| ..|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~----~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING----RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc----cCcC
Confidence 799999999999999999999999999999986332 299999999999999999999999999 4664
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=9e-17 Score=137.53 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=71.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.....++|||+|||+++|+++|+++|.+||+|+.|+|+.+..+ +||||+|+++++|++||+.||+.+|.+ ++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g----r~ 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN----KR 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC----ce
Confidence 3456789999999999999999999999999999999988654 299999999999999999999999999 58
Q ss_pred EEEeecc
Q 029768 92 VRVREYD 98 (188)
Q Consensus 92 I~V~~~~ 98 (188)
|+|....
T Consensus 179 i~V~~a~ 185 (346)
T TIGR01659 179 LKVSYAR 185 (346)
T ss_pred eeeeccc
Confidence 8887654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=3.4e-16 Score=133.35 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
..++.|||+|||+++++++|+++|++||.|..|.|+.+..+ +||||+|++.++|..||+.|||.+|+| +.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g----r~i~ 342 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN----RVLQ 342 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 44568999999999999999999999999999999998743 299999999999999999999999999 7999
Q ss_pred EeeccCC
Q 029768 94 VREYDSR 100 (188)
Q Consensus 94 V~~~~~~ 100 (188)
|......
T Consensus 343 V~~~~~~ 349 (352)
T TIGR01661 343 VSFKTNK 349 (352)
T ss_pred EEEccCC
Confidence 9876443
No 7
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=8.6e-17 Score=124.14 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.+..++|||+|||.+|.+.||+++|.+||.|..|+|+..... .||||+|+++.||++||..-||..++| +.|.|+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVE 78 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVE 78 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEE
Confidence 356789999999999999999999999999999999876553 399999999999999999999999999 699999
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
.....+
T Consensus 79 fprggr 84 (241)
T KOG0105|consen 79 FPRGGR 84 (241)
T ss_pred eccCCC
Confidence 887765
No 8
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=5.3e-16 Score=126.56 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=68.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeecc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 98 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~ 98 (188)
..+|||+|||+.++++||++||+.||+|..|.|+.+.. .+||||+|+++++|+.|| .|||..|.| +.|.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~g----r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVD----QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCC----ceEEEEecc
Confidence 57999999999999999999999999999999998864 349999999999999999 599999999 699998765
Q ss_pred C
Q 029768 99 S 99 (188)
Q Consensus 99 ~ 99 (188)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 3
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=6.3e-16 Score=131.69 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=69.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
...+|||+|||++++++||+++|.+||+|..|.|+.++.+ +||||+|.+.++|++||+.|||..|.| +.|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g----~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN----KTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECC----eeEEE
Confidence 3578999999999999999999999999999999988653 299999999999999999999999999 68998
Q ss_pred eeccC
Q 029768 95 REYDS 99 (188)
Q Consensus 95 ~~~~~ 99 (188)
.....
T Consensus 78 ~~a~~ 82 (352)
T TIGR01661 78 SYARP 82 (352)
T ss_pred Eeecc
Confidence 76543
No 10
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.65 E-value=1e-15 Score=123.32 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
..+++|||+||++.+|+++|++||+.||+|..|+|+.+...+ ||||+|+++++|+.|| .|||.+|.+ ..|.|..
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d----~~I~It~ 77 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD----QRVCITR 77 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC----ceEEEEe
Confidence 467999999999999999999999999999999999986543 9999999999999999 699999999 5888876
Q ss_pred ccC
Q 029768 97 YDS 99 (188)
Q Consensus 97 ~~~ 99 (188)
...
T Consensus 78 ~~~ 80 (243)
T PLN03121 78 WGQ 80 (243)
T ss_pred Ccc
Confidence 543
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4.6e-16 Score=113.55 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
....++|||+||++.|+|+.|.++|++||+|..|-|-.|+.+. ||||+|-..++|+.||+.++|+.|+. +.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~i 108 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPI 108 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----cce
Confidence 3567899999999999999999999999999999888886653 99999999999999999999999999 799
Q ss_pred EEeeccC
Q 029768 93 RVREYDS 99 (188)
Q Consensus 93 ~V~~~~~ 99 (188)
.|+++.+
T Consensus 109 r~D~D~G 115 (153)
T KOG0121|consen 109 RIDWDAG 115 (153)
T ss_pred eeecccc
Confidence 9998765
No 12
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1e-15 Score=112.69 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+...-.++.|||.++.+.+|+++|.+.|..||+|+.+++..|..++ ||+|+|++.++|+.||..|||.+|.|
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~---- 141 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG---- 141 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC----
Confidence 3445788999999999999999999999999999999999998765 99999999999999999999999999
Q ss_pred eEEEEeeccCCc
Q 029768 90 SYVRVREYDSRR 101 (188)
Q Consensus 90 r~I~V~~~~~~r 101 (188)
..|.|.+.-...
T Consensus 142 q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 142 QNVSVDWCFVKG 153 (170)
T ss_pred CceeEEEEEecC
Confidence 499998765443
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=3.4e-15 Score=98.77 Aligned_cols=67 Identities=27% Similarity=0.468 Sum_probs=59.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
|||+|||+.+++++|.++|..||.|..+.+..++.+ ++|||+|.+.++|+.|++.+++..|+| +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g----~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG----RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC----EEcC
Confidence 799999999999999999999999999999998653 299999999999999999999999999 5653
No 14
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=126.69 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
+...+..+|+|.|||+...+.||+.+|.+||+|.+|+|+.+..| +||||+|++.+||++|-++|||+.|.| ++|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEE
Confidence 34567789999999999999999999999999999999988654 399999999999999999999999999 799
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|.-+.
T Consensus 167 EVn~AT 172 (376)
T KOG0125|consen 167 EVNNAT 172 (376)
T ss_pred EEeccc
Confidence 997543
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=3.2e-15 Score=128.03 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||++||+++|+++|++||+|+.|.|+.++.+ +||||+|++.++|++||+.||+..|.+. ..+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~--~~~l~ 268 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG--SQPLT 268 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEE
Confidence 34678999999999999999999999999999999988643 2999999999999999999999999773 24777
Q ss_pred EeeccCC
Q 029768 94 VREYDSR 100 (188)
Q Consensus 94 V~~~~~~ 100 (188)
|..++..
T Consensus 269 V~~a~~~ 275 (346)
T TIGR01659 269 VRLAEEH 275 (346)
T ss_pred EEECCcc
Confidence 7766544
No 16
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=3.8e-15 Score=129.32 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=69.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCH--HHHHHHHHHcccceeccccceeEEEEe
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~--eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..+.+||||||++.|+++||..+|..||.|..|.|+.....+||||+|... .++.+||..|||.+|+| +.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEe
Confidence 356899999999999999999999999999999999665545999999987 78999999999999999 799998
Q ss_pred ecc
Q 029768 96 EYD 98 (188)
Q Consensus 96 ~~~ 98 (188)
+++
T Consensus 84 KAK 86 (759)
T PLN03213 84 KAK 86 (759)
T ss_pred ecc
Confidence 654
No 17
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.8e-14 Score=117.12 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
..=++|||+-|+++|++.+|+..|..||+|+.|.|+.++.++ ||||+|+++.++..|.++.+|.+|+| +.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg----rri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG----RRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC----cEEE
Confidence 344799999999999999999999999999999999997654 99999999999999999999999999 6888
Q ss_pred Eeec
Q 029768 94 VREY 97 (188)
Q Consensus 94 V~~~ 97 (188)
|...
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 8744
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.2e-14 Score=93.11 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=62.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC--CcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~--~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
+|||+|||..+++++|+++|.+||+|..+.+..+.. .++|||+|.+.++|+.|++.|++..|.| ..|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~----~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG----RPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC----EEEeeC
Confidence 489999999999999999999999999999887761 1399999999999999999999999999 577763
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.56 E-value=1.9e-14 Score=129.82 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=65.0
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceec
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
+-+++...+++|||+|||+++++++|.++|++||+|..|.|+.|..+. ||||+|.+.++|++||+.||+.+|.
T Consensus 50 ~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 50 WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 334455678999999999999999999999999999999999885432 9999999999999999999999885
No 20
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.4e-14 Score=112.65 Aligned_cols=82 Identities=26% Similarity=0.279 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
......++|-|.||+.++++.||++||..||.|..+.|+.|+.++ ||||.|...+||.+||+.|||.-++. .
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----L 259 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----L 259 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----E
Confidence 456677899999999999999999999999999999999998875 99999999999999999999999998 6
Q ss_pred EEEEeeccCC
Q 029768 91 YVRVREYDSR 100 (188)
Q Consensus 91 ~I~V~~~~~~ 100 (188)
.|.|++.++.
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 8999887653
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=3e-14 Score=128.94 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
...++|||+|||+++++++|+++|.+||+|..|.|+.++.+ +||||+|++.++|+.||+.|||..|+| +.|+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G----R~Ik 180 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG----RNIK 180 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec----ceee
Confidence 35689999999999999999999999999999999988543 299999999999999999999999999 6899
Q ss_pred Eee
Q 029768 94 VRE 96 (188)
Q Consensus 94 V~~ 96 (188)
|..
T Consensus 181 V~r 183 (612)
T TIGR01645 181 VGR 183 (612)
T ss_pred ecc
Confidence 873
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.53 E-value=1e-14 Score=119.33 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=67.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeeccCC
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 100 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~~~ 100 (188)
.+|||||||.++++++|+.+|++||+|+.|+|+++ ||||..++...+++||..|||.+|+| ..|.|+..+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg----~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHG----VNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecc----eEEEEEecccc
Confidence 68999999999999999999999999999999988 99999999999999999999999999 69999865544
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=4.2e-14 Score=128.00 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..++|||+|||+++++++|+++|+.||+|+.|.|+.+..+ +||||+|++.++|.+||+.||+.+|+| ..|+|
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG----r~LrV 278 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG----QYLRV 278 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC----eEEEE
Confidence 4479999999999999999999999999999999988653 299999999999999999999999999 69999
Q ss_pred eeccC
Q 029768 95 REYDS 99 (188)
Q Consensus 95 ~~~~~ 99 (188)
..+-.
T Consensus 279 ~kAi~ 283 (612)
T TIGR01645 279 GKCVT 283 (612)
T ss_pred EecCC
Confidence 86654
No 24
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=4.9e-14 Score=99.48 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
.-...|||.|||+++|.+++-++|.+||.|.-|.|-..+.+. .|||.|++..||.+|+++|+|..+++ +.+.|-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~vly 91 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVVLY 91 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEEEe
Confidence 445679999999999999999999999999999998877654 99999999999999999999999999 6888854
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=8e-14 Score=124.34 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.+++++|+++|.+||.|..+.|+.+..+ +||||+|++.++|+.||+.|||..|.| ..|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~----~~l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD----NKLH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 34579999999999999999999999999999999887532 399999999999999999999999999 6899
Q ss_pred EeeccC
Q 029768 94 VREYDS 99 (188)
Q Consensus 94 V~~~~~ 99 (188)
|..+..
T Consensus 369 v~~a~~ 374 (509)
T TIGR01642 369 VQRACV 374 (509)
T ss_pred EEECcc
Confidence 987654
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=7.8e-14 Score=124.30 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 19 SDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 19 ~~~~v~V~nLp~-~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
.+.+|||+||++ .+|+++|+++|++||.|..|.|+.++.+ ||||+|.+.++|+.||+.|||..|.| +.|.|...
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g-~afV~f~~~~~A~~Ai~~lng~~l~g----~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKE-TALIEMADPYQAQLALTHLNGVKLFG----KPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCEECC----ceEEEEEc
Confidence 567999999998 6999999999999999999999988655 99999999999999999999999999 69999865
Q ss_pred cC
Q 029768 98 DS 99 (188)
Q Consensus 98 ~~ 99 (188)
+.
T Consensus 349 ~~ 350 (481)
T TIGR01649 349 KQ 350 (481)
T ss_pred cc
Confidence 44
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=5.8e-14 Score=126.70 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC--CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~--G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
...+|||+||++++++++|+++|++| |+|+.|.++.+ ||||+|++.++|++||+.||+.+|+| +.|+|..
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~i~G----r~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKELEG----SEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCEECC----EEEEEEE
Confidence 34679999999999999999999999 99999988754 99999999999999999999999999 7999997
Q ss_pred ccCC
Q 029768 97 YDSR 100 (188)
Q Consensus 97 ~~~~ 100 (188)
+++.
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 7553
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.52 E-value=5.8e-14 Score=120.38 Aligned_cols=81 Identities=27% Similarity=0.531 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
+......|||.|||+++.|++|++||. +.|+|++|+++.|..++ ||+|||+++|.+++|+++||..++.| ++
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G----R~ 115 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNG----RE 115 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccC----ce
Confidence 334445599999999999999999998 58999999999998765 99999999999999999999999999 79
Q ss_pred EEEeeccCC
Q 029768 92 VRVREYDSR 100 (188)
Q Consensus 92 I~V~~~~~~ 100 (188)
|.|+|+...
T Consensus 116 l~vKEd~d~ 124 (608)
T KOG4212|consen 116 LVVKEDHDE 124 (608)
T ss_pred EEEeccCch
Confidence 999988653
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8.5e-14 Score=119.48 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=73.1
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
+|-+++...++.||||.||.++.++||..||++.|+|-.+.|++|+..+ ||||+|.+.++|+.||+.||+.+|.-.
T Consensus 74 ~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G 153 (506)
T KOG0117|consen 74 GWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG 153 (506)
T ss_pred cccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC
Confidence 6888888999999999999999999999999999999999999996532 999999999999999999999998543
Q ss_pred cceeEEEEe
Q 029768 87 FSRSYVRVR 95 (188)
Q Consensus 87 ~~~r~I~V~ 95 (188)
+.|.|.
T Consensus 154 ---K~igvc 159 (506)
T KOG0117|consen 154 ---KLLGVC 159 (506)
T ss_pred ---CEeEEE
Confidence 455553
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=1e-13 Score=122.21 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..+|||+|||+.+++++|+++|++||.|..|.|+.+..+ +||||+|.+.++|+.||+.|||.+|.| +.|.|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g----~~i~v~ 261 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG----RPIKVG 261 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC----EEEEEE
Confidence 689999999999999999999999999999999987654 399999999999999999999999999 699998
Q ss_pred ecc
Q 029768 96 EYD 98 (188)
Q Consensus 96 ~~~ 98 (188)
...
T Consensus 262 ~a~ 264 (457)
T TIGR01622 262 YAQ 264 (457)
T ss_pred Ecc
Confidence 754
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=2e-13 Score=120.31 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=68.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+|||+|||+.+++++|+++|.+||+|..|.|+.+..+ +||||+|.+.++|++||. |||..|.| ..|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g----~~i 160 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG----RPI 160 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECC----eee
Confidence 345679999999999999999999999999999999988653 299999999999999995 99999999 688
Q ss_pred EEeec
Q 029768 93 RVREY 97 (188)
Q Consensus 93 ~V~~~ 97 (188)
.|...
T Consensus 161 ~v~~~ 165 (457)
T TIGR01622 161 IVQSS 165 (457)
T ss_pred EEeec
Confidence 88754
No 32
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.3e-13 Score=87.88 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=59.9
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC----CcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 25 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 25 V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~----~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
|+|||..+++++|+++|.+||.|..+.+..+.. .++|||+|.+.++|+.|++.|++..+.| ..|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~----~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG----RPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC----cEEEe
Confidence 689999999999999999999999999988764 2399999999999999999999999998 57776
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=4.7e-13 Score=87.23 Aligned_cols=70 Identities=23% Similarity=0.403 Sum_probs=63.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC---CcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~---~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
+|+|+|||+.+++++|+++|..+|+|..+.+..+.. .++|||+|.+.++|..|++.+++..+.| ..|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~----~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG----RPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEe
Confidence 489999999999999999999999999999998764 2399999999999999999999999999 588775
No 34
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=7.8e-14 Score=111.21 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
.-.+||||||+|+|..++|.++|++||+|+++.|+.|+.++ ||||+|.+.|.|..||+.. +-.|+| ++..+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdG----R~aNc 85 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDG----RKANC 85 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccc----ccccc
Confidence 44699999999999999999999999999999999998764 9999999999999999764 457888 45555
Q ss_pred eec
Q 029768 95 REY 97 (188)
Q Consensus 95 ~~~ 97 (188)
..+
T Consensus 86 nlA 88 (247)
T KOG0149|consen 86 NLA 88 (247)
T ss_pred chh
Confidence 443
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.48 E-value=1.9e-13 Score=123.66 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
.|||+|||+++|+++|.++|.+||+|+.|.|+.+..+ +||||+|.+.++|++||+.||+..|.| +.|+|.+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g----k~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG----KPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eeEEeecc
Confidence 6999999999999999999999999999999988763 299999999999999999999999999 68999765
Q ss_pred c
Q 029768 98 D 98 (188)
Q Consensus 98 ~ 98 (188)
.
T Consensus 78 ~ 78 (562)
T TIGR01628 78 Q 78 (562)
T ss_pred c
Confidence 3
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=2.5e-13 Score=108.78 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.++|||+|||+++++++|.++|.+||.|..+.|..+..+ +||||+|.+.++|..||+.|++..|.| +.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 599999999999999999999999999999999988632 299999999999999999999999999 699998
Q ss_pred ecc
Q 029768 96 EYD 98 (188)
Q Consensus 96 ~~~ 98 (188)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 754
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.48 E-value=2.4e-13 Score=123.04 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..+.+|||+||++.+++++|+++|++||+|+.|.|+.+..+ +||||+|.+.++|++||+.|||..|.| +.|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g----k~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG----KPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC----ceeEE
Confidence 35678999999999999999999999999999999988543 399999999999999999999999999 69988
Q ss_pred eeccC
Q 029768 95 REYDS 99 (188)
Q Consensus 95 ~~~~~ 99 (188)
..+..
T Consensus 359 ~~a~~ 363 (562)
T TIGR01628 359 ALAQR 363 (562)
T ss_pred EeccC
Confidence 76543
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=6.3e-14 Score=107.94 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=72.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
+...+.+|||+||+..++++-|.++|-++|+|+.+.|..+..+ +||||||.++|||+.||+-||...|.| ++
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg----rp 80 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG----RP 80 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC----ce
Confidence 4678899999999999999999999999999999999887654 299999999999999999999999999 79
Q ss_pred EEEeecc
Q 029768 92 VRVREYD 98 (188)
Q Consensus 92 I~V~~~~ 98 (188)
|+|....
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 9998765
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=1.6e-13 Score=117.65 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=71.0
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
......+..|+|||.|||+++||+.|++-|.+||.|.+++|+..... .++|.|.++++|+.||..|||..|+| +.
T Consensus 528 ~a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks-kGVVrF~s~edAEra~a~Mngs~l~G----r~ 602 (608)
T KOG4212|consen 528 NAVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-KGVVRFFSPEDAERACALMNGSRLDG----RN 602 (608)
T ss_pred ccccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc-cceEEecCHHHHHHHHHHhccCcccC----ce
Confidence 33345678899999999999999999999999999999999655443 68999999999999999999999999 79
Q ss_pred EEEee
Q 029768 92 VRVRE 96 (188)
Q Consensus 92 I~V~~ 96 (188)
|+|..
T Consensus 603 I~V~y 607 (608)
T KOG4212|consen 603 IKVTY 607 (608)
T ss_pred eeeee
Confidence 99975
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.3e-12 Score=99.76 Aligned_cols=86 Identities=58% Similarity=0.993 Sum_probs=76.9
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.++|....+++|.|.+||+..+||||++++.+.|.|.++++..|. ++.|+|...||++.||.+|+.+.+...-++..
T Consensus 107 rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y 183 (241)
T KOG0105|consen 107 RGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY 183 (241)
T ss_pred cCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence 446778999999999999999999999999999999999998875 79999999999999999999998877546788
Q ss_pred EEEeeccCC
Q 029768 92 VRVREYDSR 100 (188)
Q Consensus 92 I~V~~~~~~ 100 (188)
|.|..+...
T Consensus 184 irv~~~~~~ 192 (241)
T KOG0105|consen 184 IRVRGDENR 192 (241)
T ss_pred EEecccCCC
Confidence 999877655
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=6.7e-13 Score=118.34 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=65.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH--cccceeccccceeEEEEeecc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK--LDRSEFRNAFSRSYVRVREYD 98 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~--lng~~l~g~~~~r~I~V~~~~ 98 (188)
..|||+|||+.+++++|+++|++||+|..|.|+.++. ||||+|++.++|++||+. +|+..|.| +.|.|....
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~--~afVef~~~e~A~~Ai~~~~~~~~~l~g----~~l~v~~s~ 76 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKR--QALVEFEDEESAKACVNFATSVPIYIRG----QPAFFNYST 76 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCC--EEEEEeCchHHHHHHHHHhhcCCceEcC----eEEEEEecC
Confidence 5799999999999999999999999999999987654 999999999999999986 47889999 699998653
No 42
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.7e-13 Score=113.73 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=71.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
-.+++..|||+.|.+-||.+||+-+|+.||+|..|+|+.+..++ ||||||++.++|++|.-+|++..|+. +.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ce
Confidence 35677899999999999999999999999999999999998876 99999999999999999999999999 79
Q ss_pred EEEe
Q 029768 92 VRVR 95 (188)
Q Consensus 92 I~V~ 95 (188)
|.|.
T Consensus 311 IHVD 314 (479)
T KOG0415|consen 311 IHVD 314 (479)
T ss_pred EEee
Confidence 9996
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=9.2e-13 Score=107.06 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=69.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
....++.||||||+..+|+++|++.|+.||+|..|.|..++. |+||.|++.|.|..||..||+++|.|+ .++..
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG--YaFVrF~tkEaAahAIv~mNntei~G~----~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG--YAFVRFETKEAAAHAIVQMNNTEIGGQ----LVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc--eEEEEecchhhHHHHHHHhcCceeCce----EEEEe
Confidence 456889999999999999999999999999999999999877 999999999999999999999999995 55554
Q ss_pred ec
Q 029768 96 EY 97 (188)
Q Consensus 96 ~~ 97 (188)
+-
T Consensus 234 WG 235 (321)
T KOG0148|consen 234 WG 235 (321)
T ss_pred cc
Confidence 43
No 44
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.2e-14 Score=110.52 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....-|||||||+.+|+.||-..|++||+|+.|.++.|+.++ |||+.|+++..-.-||..|||..|.| +.|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----Rtir 108 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIR 108 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEE
Confidence 344679999999999999999999999999999999998865 99999999999999999999999999 7999
Q ss_pred Ee
Q 029768 94 VR 95 (188)
Q Consensus 94 V~ 95 (188)
|.
T Consensus 109 VD 110 (219)
T KOG0126|consen 109 VD 110 (219)
T ss_pred ee
Confidence 96
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.2e-13 Score=114.24 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=65.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeeccC
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 99 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~~ 99 (188)
..|||.||+.+||++.|+++|.+||.|+.|..+.| ||||.|.+.++|.+|++.|||++|+| ..|.|..+++
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG----~~iEvtLAKP 330 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDG----SPIEVTLAKP 330 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecC----ceEEEEecCC
Confidence 57999999999999999999999999999988876 99999999999999999999999999 4888876554
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.8e-12 Score=113.83 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
..+|+|.||||.|...||+.+|+.||.|..|.|....+++ ||||.|.+..+|++||+.||+.+|.| ++|.|++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~g----R~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDG----RPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecC----ceeEEee
Confidence 6899999999999999999999999999999998776654 99999999999999999999999999 7999986
Q ss_pred c
Q 029768 97 Y 97 (188)
Q Consensus 97 ~ 97 (188)
+
T Consensus 193 A 193 (678)
T KOG0127|consen 193 A 193 (678)
T ss_pred e
Confidence 5
No 47
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=1.5e-12 Score=113.80 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=73.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
+.|||||||+++++++|.++|++.|.|..+.++.|..++ ||||+|.+.++|+.|++.|||.++.| ++|+|..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 899999999999999999999999999999999998765 99999999999999999999999999 7999987
Q ss_pred ccCCcC
Q 029768 97 YDSRRS 102 (188)
Q Consensus 97 ~~~~r~ 102 (188)
......
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 766553
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.3e-12 Score=103.57 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
......|+|..||.++|++||+.+|...|+|+.|+++.|+-++ ||||.|.+++||++||+.|||..|.. ..|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~----KTI 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN----KTI 113 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc----ceE
Confidence 4556789999999999999999999999999999999998764 99999999999999999999999999 699
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
+|..+++..
T Consensus 114 KVSyARPSs 122 (360)
T KOG0145|consen 114 KVSYARPSS 122 (360)
T ss_pred EEEeccCCh
Confidence 999876653
No 49
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8.1e-13 Score=104.75 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+||||+|..++++.-|...|-.||.|+.|.|..|.... ||||+|+..|||..||..||+.+|.| +.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTI 82 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeE
Confidence 4466799999999999999999999999999999999886542 99999999999999999999999999 799
Q ss_pred EEeeccCCcC
Q 029768 93 RVREYDSRRS 102 (188)
Q Consensus 93 ~V~~~~~~r~ 102 (188)
+|..+.+.+-
T Consensus 83 rVN~AkP~ki 92 (298)
T KOG0111|consen 83 RVNLAKPEKI 92 (298)
T ss_pred EEeecCCccc
Confidence 9998877653
No 50
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.34 E-value=4e-12 Score=113.44 Aligned_cols=70 Identities=16% Similarity=0.390 Sum_probs=58.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC------------CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRA------------GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~------------G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
...+|||+|||+.||+++|++||.++ +.|..+.+..++ +||||+|.+.++|..|| .|||..|.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~k--g~afVeF~~~e~A~~Al-~l~g~~~~g- 249 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEK--NFAFLEFRTVEEATFAM-ALDSIIYSN- 249 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCC--CEEEEEeCCHHHHhhhh-cCCCeEeeC-
Confidence 45689999999999999999999975 245555444433 39999999999999999 599999999
Q ss_pred cceeEEEEe
Q 029768 87 FSRSYVRVR 95 (188)
Q Consensus 87 ~~~r~I~V~ 95 (188)
..|+|.
T Consensus 250 ---~~l~v~ 255 (509)
T TIGR01642 250 ---VFLKIR 255 (509)
T ss_pred ---ceeEec
Confidence 588885
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=8.1e-12 Score=79.29 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=48.7
Q ss_pred HHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 37 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 37 L~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
|.++|++||+|..+.+..+. +++|||+|.+.++|+.|++.|||..|.| ++|+|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 67899999999999987776 2399999999999999999999999999 6999875
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=2.4e-12 Score=110.24 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=72.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccc-eeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRS-EFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~-~l~g~~~~r~I~V 94 (188)
.+.+|||+-|+..+||.||+++|.+||.|++|.|+.+..+. ||||.|.+.|-|..||+.|||. +|.|+ ..+|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc--s~PLVV 200 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC--SQPLVV 200 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccC--CCceEE
Confidence 47899999999999999999999999999999999987653 9999999999999999999997 57776 368888
Q ss_pred eeccCCcC
Q 029768 95 REYDSRRS 102 (188)
Q Consensus 95 ~~~~~~r~ 102 (188)
+.++..++
T Consensus 201 kFADtqkd 208 (510)
T KOG0144|consen 201 KFADTQKD 208 (510)
T ss_pred EecccCCC
Confidence 87766553
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=2.3e-12 Score=105.66 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=65.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
...+|+|+||.+.|+.+||+..|.+||+|..|+|+.+ |+||.|+-.++|..||+.||+++|+| ..++|+.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~g----k~m~vq~ 146 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQG----KRMHVQL 146 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhccccccccc----ceeeeee
Confidence 4578999999999999999999999999999999988 99999999999999999999999999 5888864
No 54
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=6.4e-12 Score=102.22 Aligned_cols=79 Identities=19% Similarity=0.321 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
...+.|||+-|...++.++|++.|..||+|..+.|++|..+. ||||.|.+.+|||.||+.|||..|.+ +.|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~----R~IR 135 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR----RTIR 135 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc----ceee
Confidence 346789999999999999999999999999999999997653 99999999999999999999999999 7998
Q ss_pred EeeccCC
Q 029768 94 VREYDSR 100 (188)
Q Consensus 94 V~~~~~~ 100 (188)
..++...
T Consensus 136 TNWATRK 142 (321)
T KOG0148|consen 136 TNWATRK 142 (321)
T ss_pred ccccccC
Confidence 8776443
No 55
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=6.7e-12 Score=100.16 Aligned_cols=74 Identities=34% Similarity=0.614 Sum_probs=66.4
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
..+|..+.+.|+|.||+..+.|++|+++|..+|++....+..+ ++||+|+.+++|..||..|++.+|.+ +.|
T Consensus 92 ~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~----~~~v~Fs~~~da~ra~~~l~~~~~~~----~~l 163 (216)
T KOG0106|consen 92 YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRN----FAFVEFSEQEDAKRALEKLDGKKLNG----RRI 163 (216)
T ss_pred cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhcc----ccceeehhhhhhhhcchhccchhhcC----cee
Confidence 4467889999999999999999999999999999966655322 99999999999999999999999999 688
Q ss_pred EE
Q 029768 93 RV 94 (188)
Q Consensus 93 ~V 94 (188)
+|
T Consensus 164 ~~ 165 (216)
T KOG0106|consen 164 SV 165 (216)
T ss_pred ee
Confidence 88
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=4.2e-11 Score=79.62 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=48.8
Q ss_pred HHHHHHHhh----cCCCeeEEE-EEeCCCC------cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 34 WQDLKDHMR----RAGDVCFSQ-VFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 34 ~~dL~~~F~----~~G~i~~~~-i~~~~~~------~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
+++|+++|. +||+|..+. |+.++.+ +||||+|++.++|++||+.|||..|.| +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g----r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG----RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEEe
Confidence 678999999 999999985 5555422 299999999999999999999999999 67765
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.24 E-value=9.5e-12 Score=109.24 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=64.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
||||||.+++++++|..+|+.||.|..|.++.+..+ +||||+|.+.++|.+|+++|||.+|-| +.|+|.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG----r~ikV~ 353 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAG----RLIKVS 353 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecC----ceEEEE
Confidence 999999999999999999999999999999998633 299999999999999999999999999 688874
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2e-11 Score=104.66 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=71.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccce-ecccccee
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRS 90 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~-l~g~~~~r 90 (188)
+.....+||||-||..++|.||+++|++||.|..|.|++|+.++ ||||.|.+.++|.+||+.||+.. |.|. .-
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~--~~ 107 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM--HH 107 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC--Cc
Confidence 34556799999999999999999999999999999999998764 99999999999999999999874 5552 25
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
+|.|+.++..+
T Consensus 108 pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 108 PVQVKYADGER 118 (510)
T ss_pred ceeecccchhh
Confidence 78888766554
No 59
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=7.6e-11 Score=95.68 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
+....++.|||-||.+++.+.-|.++|..||.|..|+|+.|-+++ ||||.+.+.++|..||..|||..|.+ +
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~----r 348 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD----R 348 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc----e
Confidence 345568999999999999999999999999999999999987643 99999999999999999999999999 6
Q ss_pred EEEEeec
Q 029768 91 YVRVREY 97 (188)
Q Consensus 91 ~I~V~~~ 97 (188)
.|.|...
T Consensus 349 vLQVsFK 355 (360)
T KOG0145|consen 349 VLQVSFK 355 (360)
T ss_pred EEEEEEe
Confidence 8877543
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.5e-11 Score=98.81 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.+.+|.|||-.||.+..+.||-.+|-.||.|+..++..|+.++ ||||.|+|+..++.||..|||..|.- ..|
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM----KRL 357 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM----KRL 357 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh----hhh
Confidence 4678999999999999999999999999999999999998765 99999999999999999999999998 588
Q ss_pred EEeeccC
Q 029768 93 RVREYDS 99 (188)
Q Consensus 93 ~V~~~~~ 99 (188)
+|...++
T Consensus 358 KVQLKRP 364 (371)
T KOG0146|consen 358 KVQLKRP 364 (371)
T ss_pred hhhhcCc
Confidence 8876544
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-10 Score=100.89 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=65.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc--EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
|||.||++.++..+|.++|+.||+|+.|.++.+.++- | ||+|++++.|.+||++|||..+.| .+|-|...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~----kki~vg~~ 150 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNG----KKIYVGLF 150 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCC----CeeEEeec
Confidence 9999999999999999999999999999999998763 7 999999999999999999999999 48887543
No 62
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=7.4e-11 Score=103.80 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
+.+|||++||+.++.++|.+||+.+|+|..|.++.++.. +||||.|.-.||++.||..+++..|.| +.|.|.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~G----r~l~v~ 80 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEG----RILNVD 80 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccc----eecccc
Confidence 489999999999999999999999999999999988765 299999999999999999999999999 699998
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
.+..+.
T Consensus 81 ~A~~R~ 86 (678)
T KOG0127|consen 81 PAKKRA 86 (678)
T ss_pred cccccc
Confidence 775543
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=3.6e-11 Score=96.00 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=64.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeeccC
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 99 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~~ 99 (188)
.+|||++||+.+.+.+|+.||..||.|..|.|+.. |+||+|++..||++||..||+.+|+|. .+.|+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e----~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGE----RLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecce----eeeeecccc
Confidence 47999999999999999999999999999888755 999999999999999999999999994 477766653
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=3.6e-11 Score=101.49 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=67.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
|+||||.|.+++.++.|+..|..||+|+.|++-+|+.++ ||||||+-+|.|+-|++.|||.++.| +.|+|-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG----RNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG----RNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccC----cccccc
Confidence 789999999999999999999999999999999987653 99999999999999999999999999 799985
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.11 E-value=1.6e-10 Score=102.26 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
-+..|||.+|...|...||++||++||+|+-+.|+.+..+. ||||++.+.++|.+||++||-++|+| +.|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeee
Confidence 45689999999999999999999999999999999885432 99999999999999999999999999 68888
Q ss_pred eec
Q 029768 95 REY 97 (188)
Q Consensus 95 ~~~ 97 (188)
+.+
T Consensus 480 Eka 482 (940)
T KOG4661|consen 480 EKA 482 (940)
T ss_pred eec
Confidence 743
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.6e-10 Score=102.78 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=66.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-------cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-------~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.++|||.||++.+|.++|+.+|...|.|+.+.|...++. +||||+|.+.++|+.|++.|+|+.|+|+ .|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH----~l 590 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH----KL 590 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc----eE
Confidence 345999999999999999999999999999988776543 3999999999999999999999999996 77
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|....
T Consensus 591 ~lk~S~ 596 (725)
T KOG0110|consen 591 ELKISE 596 (725)
T ss_pred EEEecc
Confidence 777554
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=3.1e-10 Score=103.22 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=70.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeeccCC
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 100 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~~~ 100 (188)
.+||||+|+.+++++||.++|+.||+|..|.++.... ||||.+....||++||.+|++..+.+ +.|+|.++-..
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~----k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVAD----KTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccc----eeeEEeeeccC
Confidence 4899999999999999999999999999998887766 99999999999999999999999999 69999988665
Q ss_pred cCC
Q 029768 101 RSY 103 (188)
Q Consensus 101 r~r 103 (188)
..+
T Consensus 496 G~k 498 (894)
T KOG0132|consen 496 GPK 498 (894)
T ss_pred Ccc
Confidence 533
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=6e-10 Score=93.44 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH-cccceeccccceeEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK-LDRSEFRNAFSRSYVR 93 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~-lng~~l~g~~~~r~I~ 93 (188)
|....-.+|||+||...++++||.++|.+||+|..+.+..... +|||+|.+.+.|+.|.++ +|...|+| ..|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEE
Confidence 4455667999999999999999999999999999999887766 999999999999999875 56567888 6999
Q ss_pred EeeccC
Q 029768 94 VREYDS 99 (188)
Q Consensus 94 V~~~~~ 99 (188)
|.+...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 998766
No 69
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.06 E-value=5.8e-10 Score=90.79 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
....+|+|.|||+.|+++||+++|.+||+++.+-|..++.+. .|-|.|+..+||+.||++|||..++| ..|++
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG----~~mk~ 156 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG----RPMKI 156 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC----ceeee
Confidence 344889999999999999999999999999999999998874 99999999999999999999999999 56777
Q ss_pred eecc
Q 029768 95 REYD 98 (188)
Q Consensus 95 ~~~~ 98 (188)
..-.
T Consensus 157 ~~i~ 160 (243)
T KOG0533|consen 157 EIIS 160 (243)
T ss_pred EEec
Confidence 6443
No 70
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=2.1e-10 Score=91.02 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc--EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
+...-+.+|||+||-..++++-|.++|-+.|+|..|.|..+++++ ||||+|+++-.+.-|++.|||..+.+. .|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~----e~ 79 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED----EE 79 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc----hh
Confidence 455677899999999999999999999999999999988777654 999999999999999999999999984 66
Q ss_pred EEe
Q 029768 93 RVR 95 (188)
Q Consensus 93 ~V~ 95 (188)
+|.
T Consensus 80 q~~ 82 (267)
T KOG4454|consen 80 QRT 82 (267)
T ss_pred hcc
Confidence 654
No 71
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.93 E-value=2.5e-09 Score=93.28 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCC----CCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~----~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
....|||.|||++++..+|+++|.+||+|+...|.... ...||||+|++.+.++.||+. +-..|.+ +++.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~----~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGG----RKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCC----eeEEE
Confidence 33459999999999999999999999999987776533 113999999999999999974 5777888 79999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
++.+..-
T Consensus 362 eek~~~~ 368 (419)
T KOG0116|consen 362 EEKRPGF 368 (419)
T ss_pred Eeccccc
Confidence 9876643
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.93 E-value=8.9e-10 Score=92.84 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=66.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..++|||++|+|.|+++.|++.|.+||+|..|.++.+..++ |+||+|++.+.+..+|. ..-..|+| +.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dg----r~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDG----RSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCC----ccccc
Confidence 67999999999999999999999999999999999998764 99999999999998885 44567888 57776
Q ss_pred eeccCC
Q 029768 95 REYDSR 100 (188)
Q Consensus 95 ~~~~~~ 100 (188)
+.+-.+
T Consensus 80 k~av~r 85 (311)
T KOG4205|consen 80 KRAVSR 85 (311)
T ss_pred eeccCc
Confidence 655443
No 73
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.91 E-value=4.6e-09 Score=82.60 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcC-CCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~-G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
..|......-+||..||..+.+.+|..+|.++ |.|..+.+..++.++ ||||+|++.+.|+-|.+.||+.-|.+++
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 34455566789999999999999999999998 678877776776554 9999999999999999999999999964
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.90 E-value=2.1e-09 Score=83.05 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=66.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE-EEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~-~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
..-+.+|||+||.+++++..|.+.|+.||.|.. -.|+.+..++ ||||.|++.|.+..||..|||+.++. ++
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n----r~ 168 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN----RP 168 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC----Cc
Confidence 345689999999999999999999999998765 3566666532 99999999999999999999999999 68
Q ss_pred EEEeec
Q 029768 92 VRVREY 97 (188)
Q Consensus 92 I~V~~~ 97 (188)
|.|..+
T Consensus 169 itv~ya 174 (203)
T KOG0131|consen 169 ITVSYA 174 (203)
T ss_pred eEEEEE
Confidence 888654
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.86 E-value=7.7e-09 Score=93.55 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=72.6
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-------cEEEEEeCCHHHHHHHHHHccccee
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-------~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
|....+.+....|||+||++.++++.|...|..||+|..+.|+....- .||||.|.+..||+.|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 556566778889999999999999999999999999999999987542 2999999999999999999999999
Q ss_pred ccccceeEEEEeec
Q 029768 84 RNAFSRSYVRVREY 97 (188)
Q Consensus 84 ~g~~~~r~I~V~~~ 97 (188)
.+ ..+++-+.
T Consensus 245 ~~----~e~K~gWg 254 (877)
T KOG0151|consen 245 ME----YEMKLGWG 254 (877)
T ss_pred ee----eeeeeccc
Confidence 98 57776544
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=5.9e-09 Score=88.29 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=65.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
++|||..+.++++++||+..|+.||+|++|.+..+..+. ||||||++......||.-||=.+|.|+ .|+|-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ----yLRVG 285 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ----YLRVG 285 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc----eEecc
Confidence 689999999999999999999999999999999987653 999999999999999999999999995 77774
No 77
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.84 E-value=1.3e-08 Score=81.01 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=65.7
Q ss_pred cEEEEeCCCCCCCHHHHHH----HhhcCCCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 21 YRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~----~F~~~G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.+|||.||+..+..++|+. +|++||+|..|....... .+-|||.|.+.+.|..|+..|+|..|.| .+++|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg----K~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG----KPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC----chhhee
Confidence 3999999999999999998 999999999887764432 2379999999999999999999999999 588888
Q ss_pred eccCC
Q 029768 96 EYDSR 100 (188)
Q Consensus 96 ~~~~~ 100 (188)
.++..
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 66543
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.80 E-value=6.7e-09 Score=87.58 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=65.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
...+|||++||.++++++|+++|.+||.|..+.++.|..+. |+||+|++.+.+++++. ..-++|+| ..+.|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~g----k~vev 170 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNG----KKVEV 170 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecC----ceeeE
Confidence 34599999999999999999999999999999999997754 99999999999999985 67788999 57777
Q ss_pred eeccC
Q 029768 95 REYDS 99 (188)
Q Consensus 95 ~~~~~ 99 (188)
+.+.+
T Consensus 171 krA~p 175 (311)
T KOG4205|consen 171 KRAIP 175 (311)
T ss_pred eeccc
Confidence 65433
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.78 E-value=3.2e-08 Score=83.17 Aligned_cols=79 Identities=24% Similarity=0.439 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCee--------EEEEEeCCCCc---EEEEEeCCHHHHHHHHHHccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~--------~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l 83 (188)
+...-+..|||.|||.++|.+++.++|++||-|. .|.|..+..|. =|.|.|...|.++-||+.||+..|
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3344556799999999999999999999999875 35666665543 789999999999999999999999
Q ss_pred ccccceeEEEEeec
Q 029768 84 RNAFSRSYVRVREY 97 (188)
Q Consensus 84 ~g~~~~r~I~V~~~ 97 (188)
.| ..|+|+.+
T Consensus 209 rg----~~~rVerA 218 (382)
T KOG1548|consen 209 RG----KKLRVERA 218 (382)
T ss_pred cC----cEEEEehh
Confidence 99 69999744
No 80
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.4e-08 Score=86.34 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=63.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc--EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeecc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 98 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~ 98 (188)
..|||| ++||+.+|.++|+.+|+|+.+.+..|. +. ||||.|.+++||++||++||...|.| .+|.|-+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~----~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKG----KPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCC----cEEEeehhc
Confidence 358998 999999999999999999999999988 54 99999999999999999999999999 688887543
No 81
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.73 E-value=3.2e-08 Score=71.06 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=41.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
++.|+|.|++..|+.++|+++|.+||+|.+|++..... .|||-|.+++.|+.|++++...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 46799999999999999999999999999999987655 8999999999999999877655
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.69 E-value=7.6e-08 Score=84.11 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=58.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeC--CCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~--~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
....+.|-+.+|||++|++||.+||+.| .|+.+.+... +..+-|||||+++||+++|+++ |-.. .|+ +.|.|
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~-mg~---RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRES-MGH---RYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHH-hCC---ceEEE
Confidence 4566788899999999999999999998 5666555554 2223899999999999999974 4444 444 89999
Q ss_pred eec
Q 029768 95 REY 97 (188)
Q Consensus 95 ~~~ 97 (188)
...
T Consensus 81 f~~ 83 (510)
T KOG4211|consen 81 FTA 83 (510)
T ss_pred Ecc
Confidence 755
No 83
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.1e-08 Score=90.67 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
++.....+|+|.|||+..+..+|+++|..||.|..|.|...... +||||+|-++.+|.+|++.|..+-|.| +
T Consensus 608 ~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG----R 683 (725)
T KOG0110|consen 608 SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG----R 683 (725)
T ss_pred ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceec----h
Confidence 44455789999999999999999999999999999999876221 299999999999999999999999999 6
Q ss_pred EEEEeeccC
Q 029768 91 YVRVREYDS 99 (188)
Q Consensus 91 ~I~V~~~~~ 99 (188)
.|.++++..
T Consensus 684 rLVLEwA~~ 692 (725)
T KOG0110|consen 684 RLVLEWAKS 692 (725)
T ss_pred hhheehhcc
Confidence 888776543
No 84
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.68 E-value=2.8e-08 Score=80.76 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=67.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
......|||+|+.+.+|.++|+.+|+-||.|..+.|..+...+ ||||+|.+.+.+++|++ ||+..|.| ..|
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~----~~i 172 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG----PAI 172 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc----ccc
Confidence 3456789999999999999999999999999988888876643 99999999999999997 99999999 588
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|....
T Consensus 173 ~vt~~r 178 (231)
T KOG4209|consen 173 EVTLKR 178 (231)
T ss_pred eeeeee
Confidence 886543
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.67 E-value=1.5e-07 Score=75.24 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=65.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..+|||.+||.++...||-.+|..|-.-+.+.|.....+ .+|||+|.+..+|+.|++.|||..|+-. ....|++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE-~~stLhi 112 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE-TGSTLHI 112 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc-cCceeEe
Confidence 578999999999999999999999876666666654433 2999999999999999999999998753 2247777
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
+.++...
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 7765544
No 86
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.65 E-value=7.2e-08 Score=82.27 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=52.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-------cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-------~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.|.|.||.+.+|.++++.||...|+|..+.|+.+.+. ..|||.|.+...+..|. +|.++.|-+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvd 78 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVD 78 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeee
Confidence 8999999999999999999999999999888764321 18999999988877775 577776665
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.2e-08 Score=88.53 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=61.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
...+|+|-|||..|++++|..+|+.||+|..|.....+.+ .+||+|-|..+|+.|++.||+.+|.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~-~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRG-IVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCc-eEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 3468999999999999999999999999999877666666 899999999999999999999999994
No 88
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.3e-07 Score=77.43 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=67.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccc-eeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRS-EFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~-~l~g~~~~r~I~V 94 (188)
.+.+||||-|...-.|+|+..+|..||+|+.|.+....++. ||||.|....||..||..|||. ++.|.. ..|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS--SSLVV 95 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS--SSLVV 95 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCc--cceEE
Confidence 56899999999999999999999999999999999887653 9999999999999999999997 566642 45666
Q ss_pred eecc
Q 029768 95 REYD 98 (188)
Q Consensus 95 ~~~~ 98 (188)
+.++
T Consensus 96 K~AD 99 (371)
T KOG0146|consen 96 KFAD 99 (371)
T ss_pred Eecc
Confidence 5543
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.52 E-value=1.1e-07 Score=75.91 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
..-..+|||.||..+||+++|+.+|+.|-....+.|.....-.+|||+|++.+.|.+|+..|.|..|..
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceecc
Confidence 344568999999999999999999999976665555443222399999999999999999999987754
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.50 E-value=8.2e-07 Score=60.69 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=46.1
Q ss_pred cEEEEeCCCCCCCHHHHH----HHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 21 YRVLVTGLPSSASWQDLK----DHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~----~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..|+|.|||.+.....|+ .++.-|| +|..| . . +.|+|.|.+++.|+.|++.|+|.++.| .+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--~--~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--G--GTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------T--T-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--C--CEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 368999999998877754 5666786 56554 2 1 279999999999999999999999999 599998
Q ss_pred eccC
Q 029768 96 EYDS 99 (188)
Q Consensus 96 ~~~~ 99 (188)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 6543
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.40 E-value=1.3e-06 Score=76.44 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=55.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE-EEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~-~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
.+...|-+.+||+.||++||.+||+-.-.|.. +.++.+..+ +-|||.|+++|.|++||.+ |...|.- +.|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGh----RYIE 175 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGH----RYIE 175 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhcc----ceEE
Confidence 46678899999999999999999986432222 334444433 3899999999999999964 5555554 7999
Q ss_pred Eee
Q 029768 94 VRE 96 (188)
Q Consensus 94 V~~ 96 (188)
|..
T Consensus 176 vF~ 178 (510)
T KOG4211|consen 176 VFR 178 (510)
T ss_pred eeh
Confidence 963
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.38 E-value=5.3e-07 Score=76.23 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=63.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCee--------EEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceec
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~--------~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
.....+|||-+||..+++++|.++|.+||.|. .|+|.+++.+. -|.|.|++...|+.||..+++..|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999874 34444454432 8999999999999999999999999
Q ss_pred cccceeEEEEe
Q 029768 85 NAFSRSYVRVR 95 (188)
Q Consensus 85 g~~~~r~I~V~ 95 (188)
+. .|+|.
T Consensus 143 gn----~ikvs 149 (351)
T KOG1995|consen 143 GN----TIKVS 149 (351)
T ss_pred CC----Cchhh
Confidence 94 77775
No 93
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.31 E-value=7.3e-07 Score=72.42 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=67.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
...+++||.|.|..+++++.|...|.+|=....+.++.++.++ |+||.|.+.+|+..|+.+|||..++. +.|
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs----rpi 262 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS----RPI 262 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc----chh
Confidence 4677999999999999999999999999888888888886653 99999999999999999999999998 688
Q ss_pred EEe
Q 029768 93 RVR 95 (188)
Q Consensus 93 ~V~ 95 (188)
++.
T Consensus 263 klR 265 (290)
T KOG0226|consen 263 KLR 265 (290)
T ss_pred Hhh
Confidence 775
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.25 E-value=5.3e-06 Score=71.40 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=66.8
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeecc
Q 029768 20 DYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 98 (188)
Q Consensus 20 ~~~v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~ 98 (188)
.+.|.|.||.+. +|.+-|..+|.-||+|..|.|+.++.. -|.|.|.+...|+-|++.|+|..|.| ++|+|...+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceecC----ceEEEeecc
Confidence 688999999665 999999999999999999999988765 79999999999999999999999999 699987543
No 95
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.24 E-value=1.4e-05 Score=56.56 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=55.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhc--CCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~--~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
.+|-|.|||...|.++|.+++.+ .|....+.+..|-.+ +||||.|.+++.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 57899999999999999999876 366777777776443 3999999999999999999999998753
No 96
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.13 E-value=7.2e-06 Score=51.57 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=42.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHH
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 75 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai 75 (188)
..|-|.+.++...+.-|+ +|.+||+|+.+.+....+ +.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 457889999887755554 888999999887763333 9999999999999985
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=2.7e-06 Score=75.62 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=68.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
....++|||+|||..+++.+++++...||.+....++.+..+ +|||.+|.+....+.||..|||+.+.+ .+|
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd----~~l 361 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD----KKL 361 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC----cee
Confidence 356789999999999999999999999999998888887663 299999999999999999999999999 578
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|+.+-
T Consensus 362 vvq~A~ 367 (500)
T KOG0120|consen 362 VVQRAI 367 (500)
T ss_pred Eeehhh
Confidence 776543
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.04 E-value=2.8e-05 Score=62.21 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
.+....+|+.|||..++.+.|.++|.+|.....+.++....+ .|||+|.+...|..|...|++..|.-. -.++|..
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~-iAfve~~~d~~a~~a~~~lq~~~it~~---~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSG-IAFVEFLSDRQASAAQQALQGFKITKK---NTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCc-eeEEecchhhhhHHHhhhhccceeccC---ceEEecc
Confidence 466788999999999999999999999998888887765544 999999999999999999999888631 2555543
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.96 E-value=8.9e-05 Score=63.45 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 18 RSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 18 ~~~~~v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
..++.+.|-+|... ++-+.|-++|-.||.|+.|.+++.+.+ .|.||+.++...+.||..||+..+.| .+|.|..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lfG----~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLFG----GKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCcccc----ceEEEee
Confidence 45688999999765 777889999999999999999998877 89999999999999999999999988 4777764
Q ss_pred c
Q 029768 97 Y 97 (188)
Q Consensus 97 ~ 97 (188)
.
T Consensus 360 S 360 (494)
T KOG1456|consen 360 S 360 (494)
T ss_pred c
Confidence 3
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.94 E-value=1.8e-05 Score=67.74 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=65.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC-eeE--EEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~-i~~--~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
|+.+....|-+.+||+..+.+||-+||..|.. |.. |+|+.+..|. -|||+|.++|+|..|..+.+++.+..
T Consensus 275 p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~--- 351 (508)
T KOG1365|consen 275 PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKS--- 351 (508)
T ss_pred CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhccc---
Confidence 45555667889999999999999999999874 555 7888776553 89999999999999999998888877
Q ss_pred eeEEEEee
Q 029768 89 RSYVRVRE 96 (188)
Q Consensus 89 ~r~I~V~~ 96 (188)
+.|.|..
T Consensus 352 -RYiEvfp 358 (508)
T KOG1365|consen 352 -RYIEVFP 358 (508)
T ss_pred -ceEEEee
Confidence 7999974
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.92 E-value=5.3e-05 Score=69.18 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=57.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCe-eEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i-~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.|-+.|+|++++.+||.+||..|-.+ ..|.+..+.++ +-|.|.|++.++|..|...|+++.|.. ++|.|.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n----r~V~l~ 942 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN----RVVSLR 942 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc----eeEEEE
Confidence 77889999999999999999999643 23444444333 389999999999999999999999998 677764
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.91 E-value=3e-05 Score=65.50 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHH----H--HHHhhcCCCeeEEEEEeCCCC-----c--EEEEEeCCHHHHHHHHHHcccce
Q 029768 16 SRRSDYRVLVTGLPSSASWQD----L--KDHMRRAGDVCFSQVFRDRGG-----M--TGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~d----L--~~~F~~~G~i~~~~i~~~~~~-----~--~afV~F~~~eda~~Ai~~lng~~ 82 (188)
..-...-|||-+||+.+-.++ | .++|.+||+|..|-|...... . -.||+|...|||..||.+.||..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 345567799999999987777 3 489999999998766443211 1 23999999999999999999999
Q ss_pred eccccceeEEEE
Q 029768 83 FRNAFSRSYVRV 94 (188)
Q Consensus 83 l~g~~~~r~I~V 94 (188)
++| +.|+.
T Consensus 190 ~DG----r~lka 197 (480)
T COG5175 190 LDG----RVLKA 197 (480)
T ss_pred ccC----ceEee
Confidence 999 56665
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.90 E-value=8.7e-06 Score=68.25 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=67.4
Q ss_pred CCcEEE-EeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 19 SDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 19 ~~~~v~-V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
...++| |+||++.++.++|+.+|..+|.|+.+.+..+..++ ||||+|.+..++..|+.. +...+.+ .+|.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~----~~~~ 257 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG----RPLR 257 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC----cccc
Confidence 345666 99999999999999999999999999998887654 999999999999999875 6677777 6888
Q ss_pred EeeccCCcCC
Q 029768 94 VREYDSRRSY 103 (188)
Q Consensus 94 V~~~~~~r~r 103 (188)
|.++......
T Consensus 258 ~~~~~~~~~~ 267 (285)
T KOG4210|consen 258 LEEDEPRPKS 267 (285)
T ss_pred cccCCCCccc
Confidence 8887766543
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.89 E-value=6.8e-06 Score=66.84 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---------c-------EEEEEeCCHHHHHHHHHHcccce
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---------M-------TGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---------~-------~afV~F~~~eda~~Ai~~lng~~ 82 (188)
....||++|||+.+....|+++|.+||.|-.|.|...... + -|+|||.....|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988765332 1 68999999999999999999999
Q ss_pred eccc
Q 029768 83 FRNA 86 (188)
Q Consensus 83 l~g~ 86 (188)
|.|.
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9995
No 105
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.82 E-value=4.8e-06 Score=71.29 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=54.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
+|+|++|+..+...++.+.|..+|+|.++.+.......+|.|+|........|++ ++|.++.-
T Consensus 153 t~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 153 TREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 5899999999999999999999999999988776555588899999999999995 67777653
No 106
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.78 E-value=8.6e-06 Score=72.24 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=65.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
+...+||+--|+-.++..||.+||+.+|+|..|.|+.|.... .|||+|.+.+.+..|| .|.|+-+.| .+|.
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg----~pv~ 251 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLG----VPVI 251 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccC----ceeE
Confidence 334578888888899999999999999999999999997653 9999999999999999 699999999 5888
Q ss_pred Eeec
Q 029768 94 VREY 97 (188)
Q Consensus 94 V~~~ 97 (188)
|+..
T Consensus 252 vq~s 255 (549)
T KOG0147|consen 252 VQLS 255 (549)
T ss_pred eccc
Confidence 8743
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=0.00022 Score=50.71 Aligned_cols=66 Identities=24% Similarity=0.253 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEE-E----------EeCCCCcEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~-i----------~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
...-|.|-+.|+..+ ..|.++|++||+|+... + .....++.-.|.|++..+|.+||. .||..|.|.
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 456688999999954 66777899999998764 0 111122389999999999999995 699999985
No 108
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.74 E-value=3.4e-05 Score=66.89 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeC---CCC--------------cEEEEEeCCHHHHHHHHHHccc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RGG--------------MTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~---~~~--------------~~afV~F~~~eda~~Ai~~lng 80 (188)
-...+|.|.|||.+-..+.|.+||+.||.|..|.|... +.. .+|+|||++.+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45678999999999999999999999999999999876 110 1899999999999999987754
Q ss_pred c
Q 029768 81 S 81 (188)
Q Consensus 81 ~ 81 (188)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00013 Score=64.49 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=60.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHH----cccceeccc
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRK----LDRSEFRNA 86 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~----lng~~l~g~ 86 (188)
+-+...+||||+||--++.+||..+|. .||.|.++-|-.|++- +-|=|+|.+.....+||.+ |+..+|.
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-- 443 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-- 443 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc--
Confidence 456668999999999999999999999 6999999999888442 2788999999999999863 4444444
Q ss_pred cceeEEEEee
Q 029768 87 FSRSYVRVRE 96 (188)
Q Consensus 87 ~~~r~I~V~~ 96 (188)
..|.|+.
T Consensus 444 ---KRVEIkP 450 (520)
T KOG0129|consen 444 ---KRVEIKP 450 (520)
T ss_pred ---eeeeecc
Confidence 4666654
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0002 Score=64.09 Aligned_cols=75 Identities=25% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCCcEEEEeCCCCCCC------HHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 18 RSDYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t------~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
.-...|+|.|+|---. ..-|..+|+++|+|+...+..+..++ |.|++|+++.+|+.|++.|||..|+-.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn-- 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN-- 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc--
Confidence 3456788999987522 22356789999999998888776654 999999999999999999999998764
Q ss_pred eeEEEEe
Q 029768 89 RSYVRVR 95 (188)
Q Consensus 89 ~r~I~V~ 95 (188)
-...|.
T Consensus 134 -Htf~v~ 139 (698)
T KOG2314|consen 134 -HTFFVR 139 (698)
T ss_pred -ceEEee
Confidence 355553
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.57 E-value=0.00019 Score=62.05 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
...+|+..|||..++++||+++|.+.|-.+.......++.++|.+.+++.|+|..|+-.|+...+.+. -.|+|..
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen---~hlRvSF 487 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGEN---HHLRVSF 487 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCC---ceEEEEe
Confidence 34579999999999999999999999988777666665555999999999999999999999988774 4666653
No 112
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.48 E-value=0.00084 Score=43.47 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=44.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcC---CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~---G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
..+|+|.|+. +++.+||+.+|..| .....|+.+.|. -|-|.|.+.+.|..||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 3679999984 47779999999998 235577777775 5899999999999999765
No 113
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.46 E-value=0.00059 Score=57.89 Aligned_cols=77 Identities=17% Similarity=0.297 Sum_probs=58.3
Q ss_pred CCCCcEEEEeCC--CC--CCC-------HHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 17 RRSDYRVLVTGL--PS--SAS-------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 17 ~~~~~~v~V~nL--p~--~~t-------~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.....+|+|.|| |. ..+ .+||.+--.+||.|..|.|.-....+.+.|.|.+.++|+.||+.|+|..|.|
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 456788999997 22 244 2334444678999999877654443499999999999999999999999999
Q ss_pred ccceeEEEEeec
Q 029768 86 AFSRSYVRVREY 97 (188)
Q Consensus 86 ~~~~r~I~V~~~ 97 (188)
++|.-...
T Consensus 342 ----Rql~A~i~ 349 (382)
T KOG1548|consen 342 ----RQLTASIW 349 (382)
T ss_pred ----eEEEEEEe
Confidence 57776543
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.36 E-value=0.00017 Score=65.96 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE-EEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~-~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
-|..-+..|||..||..|+++++.++|...-.|++ |.|....+.. .|||+|..++++..|+..-+ +...|+ +
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~-k~y~G~---r 504 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKT-KFYPGH---R 504 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhccc-ccccCc---e
Confidence 35566789999999999999999999998777766 6666655432 99999999888888875433 344454 7
Q ss_pred EEEEe
Q 029768 91 YVRVR 95 (188)
Q Consensus 91 ~I~V~ 95 (188)
.|.|.
T Consensus 505 ~irv~ 509 (944)
T KOG4307|consen 505 IIRVD 509 (944)
T ss_pred EEEee
Confidence 88885
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.36 E-value=0.0013 Score=56.54 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=59.5
Q ss_pred eCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee-ccccceeEEEEeeccCCc
Q 029768 26 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-RNAFSRSYVRVREYDSRR 101 (188)
Q Consensus 26 ~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l-~g~~~~r~I~V~~~~~~r 101 (188)
-|--+.+|.+-|-.+-..+|+|..|-|+.. ++--|.|||++.+.|++|...|||.+| .|+ +.|+|+.+++.+
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGC---CTLKIeyAkP~r 200 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGC---CTLKIEYAKPTR 200 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccc---eeEEEEecCcce
Confidence 455566999999999999999999987765 333799999999999999999999987 455 788888776544
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00054 Score=60.75 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEe--CC-----CCc---EEEEEeCCHHHHHHHHH
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR--DR-----GGM---TGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~--~~-----~~~---~afV~F~~~eda~~Ai~ 76 (188)
.-..+||||+||++++|++|.+.|..||.|.- +... +. ..+ |+|+.|+++..+..-|.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 34579999999999999999999999998752 2221 10 112 99999999876555443
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00092 Score=59.76 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=39.2
Q ss_pred HhhcCCCeeEEEEEeC-CCC------cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 40 HMRRAGDVCFSQVFRD-RGG------MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 40 ~F~~~G~i~~~~i~~~-~~~------~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
-+.+||.|..|.|..+ ... +.-||+|++.++|++|++.|+|.+|.|
T Consensus 429 ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 429 ECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred HhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 3567899999988776 221 278999999999999999999999999
No 118
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0022 Score=48.40 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 36 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 36 dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
+|-+.|.+||+|.-+.++.+ .-+|+|.+-+.|.+|+. |+|.+++| ..|+|...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g----~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNG----RTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETT----EEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECC----EEEEEEeC
Confidence 57778899999998888765 57999999999999995 89999999 58887643
No 119
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.08 E-value=0.0026 Score=43.52 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=42.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
+...+..||. +|.+....||.++|+.||.|.--.| .| + -|||...+.+.|..|++.++
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d--T-SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND--T-SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT--T-EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC--C-cEEEEeecHHHHHHHHHHhc
Confidence 3455667776 9999999999999999999864433 33 2 79999999999999988775
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.06 E-value=0.0023 Score=53.34 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCCeeEEEEEeCCCCc-----EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 34 WQDLKDHMRRAGDVCFSQVFRDRGGM-----TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 34 ~~dL~~~F~~~G~i~~~~i~~~~~~~-----~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
++++++-.++||+|..|.|+..+.-. --||+|+..+.|.+|+-.|||..|.|+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 34566677899999999888775432 679999999999999999999999993
No 121
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.05 E-value=0.00048 Score=60.56 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=65.2
Q ss_pred CCCCCCCCCCcEEEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 11 GSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
|..+.-....+.|-+.-.|+. -+.++|..+|.+||+|..|.|-.... -|.|+|.+..+|-.|. +.++..|++
T Consensus 363 gv~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~-~s~~avlnn---- 435 (526)
T KOG2135|consen 363 GVPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAY-ASHGAVLNN---- 435 (526)
T ss_pred CCCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchh-ccccceecC----
Confidence 333444455666777777777 46789999999999999998877644 6999999999998887 589999999
Q ss_pred eEEEEeeccC
Q 029768 90 SYVRVREYDS 99 (188)
Q Consensus 90 r~I~V~~~~~ 99 (188)
+.|+|.+...
T Consensus 436 r~iKl~whnp 445 (526)
T KOG2135|consen 436 RFIKLFWHNP 445 (526)
T ss_pred ceeEEEEecC
Confidence 7999987655
No 122
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.03 E-value=0.00059 Score=58.09 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCC--CeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G--~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
...+.+|||||-|.||++||.+.+...| .|..++++.+... +||+|........++.++.|-..+|+|+
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 3457899999999999999998877666 3444455555432 2999999999999999999999999996
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.96 E-value=0.0034 Score=54.19 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=48.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcC----CCeeEEEEEeCCC---CcEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRA----GDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~----G~i~~~~i~~~~~---~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
...|-+.+||+++++.|+.+||... |.++.|.++...+ ++-|||.|+.+++|+.||.+ | ....|+ +.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-h-rq~iGq---RYI 235 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-H-RQNIGQ---RYI 235 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-H-HHHHhH---HHH
Confidence 3445557999999999999999742 2333444444433 34899999999999999975 3 333443 566
Q ss_pred EE
Q 029768 93 RV 94 (188)
Q Consensus 93 ~V 94 (188)
.|
T Consensus 236 El 237 (508)
T KOG1365|consen 236 EL 237 (508)
T ss_pred HH
Confidence 65
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.95 E-value=0.0027 Score=49.63 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhc-CCCe---eEEEEEeCCCC--c----EEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDRGG--M----TGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~-~G~i---~~~~i~~~~~~--~----~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
....+|.|.+||+++|++++.+.+.. ++.. .++.-...... . -|||.|.+.+++..-++.++|..|.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999999886665 5544 33332222211 1 8999999999999999999998886643
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.87 E-value=0.00084 Score=58.47 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=53.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc-eeccccceeEEEEee
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS-EFRNAFSRSYVRVRE 96 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~-~l~g~~~~r~I~V~~ 96 (188)
.++||+||.+.++..||+.+|...---..-.++... + |+||.+.+..-|.+|++.++|+ ++.| ..+.|..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-g-yafvd~pdq~wa~kaie~~sgk~elqG----kr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-G-YAFVDCPDQQWANKAIETLSGKVELQG----KRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-c-eeeccCCchhhhhhhHHhhchhhhhcC----ceeeccc
Confidence 479999999999999999999875211111222222 2 9999999999999999999997 6888 4676653
No 126
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.81 E-value=0.00074 Score=55.12 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=42.8
Q ss_pred HHHHHHhh-cCCCeeEEEEEeCCC---CcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 35 QDLKDHMR-RAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 35 ~dL~~~F~-~~G~i~~~~i~~~~~---~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
+||...|+ +||+|+.+.|..+-. -+-++|.|...|+|++|++.||+..|.| ++|...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G----~pi~ae 143 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG----RPIHAE 143 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC----Ccceee
Confidence 34444455 799998876554322 1268999999999999999999999999 476654
No 127
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.79 E-value=0.00086 Score=60.49 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhc-CCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~-~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
...-.+.|||.||-.-.|.-.|+.++.. +|.|+..+|-.-+. .|||.|.+.++|...+..|||..|.-
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCC
Confidence 4455689999999999999999999994 66777664433333 79999999999999999999998743
No 128
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.0033 Score=56.48 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=50.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhc--CCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~--~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
+...-|.|++.-||+++-.++|+.||.. |=+++.|++..+.+ =||+|++.+||+.|.+.|
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYL 232 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHH
Confidence 4456688999999999999999999985 77899999887764 689999999999997543
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.0025 Score=52.18 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=58.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..|||.||+.-+..+.|..-|..||+|....++.|..+. -++|+|++.-.+.+|+..++..-|.+....++.-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 679999999999999999999999999888777765432 899999999999999987755555443222444453
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.55 E-value=0.028 Score=40.58 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=50.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCc--EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~--~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
....+.+...|.-++.++|..|.+.+- .|..+.|+++...+ .+.|.|.++++|+.-.+.+||+.|+.-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 334444555566666677766655554 57788888886644 788899999999999999999988753
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.48 E-value=0.0039 Score=58.67 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=64.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.......+||++|+..+....|...|..||.|..|++-.... ||+|.|++...++.|+..|-|..|.+- .+.|.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvd 526 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVD 526 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchhhHHHHhcCcCCCC--Ccccccc
Confidence 344557899999999999999999999999999877654433 999999999999999999999999884 2456665
No 132
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.34 E-value=0.0024 Score=58.20 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=58.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
+.+...+|||+||...+..+-++.+...||.|..+..+. |||++|....-+..|+..++-..++|.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 456678999999999999999999999999987765543 999999999999999999988888885
No 133
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.29 E-value=0.021 Score=38.01 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=40.4
Q ss_pred EEEEe-CCCCCCCHHHHHHHhhcCC-----CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 22 RVLVT-GLPSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 22 ~v~V~-nLp~~~t~~dL~~~F~~~G-----~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
++||. +--..++..+|..++...+ .|-.++|..+ |+||+.... .|+.+++.|++..+.| ++|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~g----k~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKG----KKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS--------EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCC----eeEEEE
Confidence 45552 2344689999999998765 3556776655 999998864 7888999999999999 688887
Q ss_pred e
Q 029768 96 E 96 (188)
Q Consensus 96 ~ 96 (188)
.
T Consensus 73 ~ 73 (74)
T PF03880_consen 73 R 73 (74)
T ss_dssp E
T ss_pred E
Confidence 5
No 134
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.019 Score=48.22 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=52.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
+.=|-|-++|+.-. .-|..+|.+||+|+..... .++++-+|.|.+.-+|.+||. .||+.|+|. ..|=|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~---vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD---VMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc---eEEeeee
Confidence 34466667777654 3566789999999875443 455599999999999999997 699999995 4555553
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.10 E-value=0.0021 Score=60.03 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=58.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
...|||.|+|+..|.++|+.+|.++|.++.+.++..+.+. .|||.|.++.++..++..++...+.-
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 5689999999999999999999999999998877766543 89999999999999998888777665
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.06 E-value=0.0011 Score=62.17 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=55.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceec
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
.-+||+|||...+++.+|+..|..+|.|..|+|.....+. ||||.|.+...+-.|+..+.+..|.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc
Confidence 3579999999999999999999999999999998774332 9999999998888888777776553
No 137
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.95 E-value=0.058 Score=35.34 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=42.0
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 31 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.++.+||+..+..|+-. +|..++.| =||.|.+.++|+++.+..||..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE--EEEEECChHHHHHHHHhcCCCEEEE
Confidence 47889999999999643 45666664 5899999999999999999999887
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.89 E-value=0.0045 Score=52.40 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCCcEEEEeCCCCCCCHHHH-H--HHhhcCCCeeEEEEEeCCC-----Cc--EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 18 RSDYRVLVTGLPSSASWQDL-K--DHMRRAGDVCFSQVFRDRG-----GM--TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL-~--~~F~~~G~i~~~~i~~~~~-----~~--~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
-....+||-+|+..+..+++ + +.|.+||.|..|.+..+.. +. -++|+|+..|||..||...+|..++|+
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 34466888899888655544 3 6899999999887776551 11 689999999999999999999999984
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.51 E-value=0.00072 Score=63.09 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=50.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC----CcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~----~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
-+++||.||+..+.+.||.++|..+|.|..+.|....+ .++|+|+|..++++.+||.. +...+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhh
Confidence 35799999999999999999999998776665542211 23999999999999999964 4444444
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.71 E-value=0.14 Score=45.25 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=58.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCc--EEEEEeCCHHHHHHHHHHcccceecc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~--~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
...|+|-.+|..++..||-.|...+- .|..+.|+.|.... ...|.|.++++|..-.+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999988654 68899999976655 78899999999999999999998875
No 141
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.70 E-value=0.12 Score=39.09 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=45.7
Q ss_pred CCCCcEEEEeCCCCCCC-HHHHH---HHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 17 RRSDYRVLVTGLPSSAS-WQDLK---DHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t-~~dL~---~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
.+.-.+|.|.-|..++. .+||+ ..++.||+|..|.+.-.. -|.|.|.+...|-+|+..++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC
Confidence 34556888888777753 34444 456789999998765333 699999999999999998865
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.12 E-value=0.2 Score=39.51 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=42.1
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc--cceeccccceeEEEEeec
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln--g~~l~g~~~~r~I~V~~~ 97 (188)
..+.|+++|..++.+.....+..= + =..|.|.+.++|..|...|+ +..|.| ..|+|...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-r-Ri~v~f~~~~~A~~~r~~l~~~~~~~~g----~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-R-RIRVVFESPESAQRARQLLHWDGTSFNG----KRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-T-EEEEE-SSTTHHHHHHHTST--TSEETT----EE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-C-EEEEEeCCHHHHHHHHHHhcccccccCC----CceEEEEc
Confidence 458899999999987765444332 2 57899999999999999999 999999 46777644
No 143
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=94.05 E-value=0.36 Score=38.75 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=19.8
Q ss_pred EEEEEeCCHHHHHHHHH--Hcccceecc
Q 029768 60 TGIVDYTSYDDMKYAIR--KLDRSEFRN 85 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~--~lng~~l~g 85 (188)
+-|-.=.++|||++||+ .|+|.+|.-
T Consensus 60 Vrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 60 VRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred EEeeecchHHHHHHhhcceeeccceeee
Confidence 44555677899999986 699999844
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.25 Score=44.94 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcC----CCeeEEEEEeC--------------C------------------CC-
Q 029768 17 RRSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRD--------------R------------------GG- 58 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~-~t~~dL~~~F~~~----G~i~~~~i~~~--------------~------------------~~- 58 (188)
.....+|-|.||.|. +...||.-+|..| |.|..|.|... + ..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999998 8999999999876 47877766431 1 00
Q ss_pred ----------------c--EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 59 ----------------M--TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 59 ----------------~--~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
+ ||+|+|.+.+.|.+..+.++|.+|...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 0 999999999999999999999999763
No 145
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.76 E-value=0.052 Score=51.19 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=58.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeecc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 98 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~ 98 (188)
+.++.|.+-+++---|..+|.+||.|..++...+-+ .|.|+|...|.|..|++.|+|.++.-. ..+.+|-+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~--g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT--GAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc--CCceeEEecc
Confidence 455666777788888999999999999999888766 899999999999999999999975321 1466665543
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.15 E-value=0.28 Score=44.29 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=23.2
Q ss_pred EEEEEeCCHHHHHHHHHHcccceec
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
||||.|.+++++..+.+.+||+.++
T Consensus 433 YAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 433 YAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred eeEEeecCHHHHHHHHHHHcCCchh
Confidence 9999999999999999999999654
No 147
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=90.85 E-value=2.6 Score=33.01 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=6.2
Q ss_pred cEEEEeCCCCC
Q 029768 21 YRVLVTGLPSS 31 (188)
Q Consensus 21 ~~v~V~nLp~~ 31 (188)
..|||.-.|+.
T Consensus 38 rsvWvArnPPG 48 (195)
T KOG0107|consen 38 RSVWVARNPPG 48 (195)
T ss_pred eeEEEeecCCC
Confidence 45666655554
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.60 E-value=1.6 Score=36.74 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCe-eEEEEEeCCCCcEEEEEeCC-------HHHHHHHHHHcc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRGGMTGIVDYTS-------YDDMKYAIRKLD 79 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i-~~~~i~~~~~~~~afV~F~~-------~eda~~Ai~~ln 79 (188)
-..-|+|+||+.++...||+..+.+-+-+ .. |.....-+-||+.|-+ ..+|.+++..+|
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~--iswkg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMS--ISWKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCcee--EeeecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 33459999999999999999988876532 22 2222222269999976 456666665554
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.15 E-value=0.25 Score=41.54 Aligned_cols=68 Identities=10% Similarity=-0.017 Sum_probs=53.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC----CcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~----~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
..-.++||+++.+.+.+.++..+|.++|.+..+.+..... .+++.|.|+..+.+..||...-...+.+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~ 157 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDG 157 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccc
Confidence 4678999999999999999999999999877666554322 1299999999999999996433334444
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=87.00 E-value=1.6 Score=31.74 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=29.0
Q ss_pred EEEEeCCCCC---------CCHHHHHHHhhcCCCeeEEEEEeCCCCc--EEEEEeCC-HHHHHHHHH
Q 029768 22 RVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTS-YDDMKYAIR 76 (188)
Q Consensus 22 ~v~V~nLp~~---------~t~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV~F~~-~eda~~Ai~ 76 (188)
.++|-|++.. ++.++|++.|..|..+. +..+.+..+. +++|+|.. ..-..+|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 5677788554 46788999999998875 4455555543 99999985 444555553
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.24 E-value=0.036 Score=48.60 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=58.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeC-CCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~-~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
...+|-|.|+|+...|+.|..|+.+||.|..|..+.. ..+..--|+|.+.+.+..||.+|||..|+.. .++|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~----~~k~~ 152 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ----HLKVG 152 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh----hhhcc
Confidence 3456889999999999999999999999998876543 2222344678899999999999999999884 56653
No 152
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=86.15 E-value=3.6 Score=28.17 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=42.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~l 78 (188)
.|+--.....+..+|++.+++ || +|..|..+.-+.+ .-|||.+....+|.+...++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444457888999999999987 66 5777776665543 38999999888888776554
No 153
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=86.06 E-value=4 Score=27.49 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=42.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~l 78 (188)
..|+-.++...+..||+..+++ |+ +|..|..+.-+.+ .-|||.+..-++|.+...++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3566668899999999999987 66 5777776655433 38999998888877776554
No 154
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=85.34 E-value=1.3 Score=37.94 Aligned_cols=10 Identities=0% Similarity=0.239 Sum_probs=5.7
Q ss_pred CCCHHHHHHH
Q 029768 31 SASWQDLKDH 40 (188)
Q Consensus 31 ~~t~~dL~~~ 40 (188)
.+++++|.++
T Consensus 212 d~~k~eid~i 221 (367)
T KOG0835|consen 212 DTTKREIDEI 221 (367)
T ss_pred CCcHHHHHHH
Confidence 4566666554
No 155
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=85.10 E-value=1.3 Score=38.54 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=49.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCC------cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~------~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
..-++|.|.+||+..++++|.+....+- .|.+..+.....+ ..|+|.|.+++++..-...++|..|-.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 3457899999999999999887766643 3444444432111 188999999999888888888887644
No 156
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=3 Score=36.62 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
-.+.|-|-++|.....+||...|..|+.- .++|++-.++ .||..|.....|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDdt-halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDDT-HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeecc-eeEEeecchHHHHHHhh
Confidence 34688899999999999999999999752 2233332233 79999999999999984
No 157
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=78.49 E-value=11 Score=24.62 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 35 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 35 ~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
.+|.+++.++| +..+.|.--..|.+.|+.+++.++++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45667778888 444444433224488889989999888887763
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=78.03 E-value=0.36 Score=43.78 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=50.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
.|.|||.|++++++.++|+.+...+--+..+-+-.+..- .+++|+|.---++..||..||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 467999999999999999999888755544433322111 1889999988888888888888877653
No 159
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=77.37 E-value=9 Score=29.00 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=39.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~l 78 (188)
.||-.+....+..+|++.+++ |+ +|..|..+.-+.+ .-|||.+....+|.+...++
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 445557788999999999887 65 5777776665544 38999998777655444443
No 160
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=76.10 E-value=4.4 Score=31.65 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=35.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 58 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~ 58 (188)
.......+++.|++..++..++..+|..+|.+..+.+......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG 263 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCC
Confidence 3456678999999999999999999999999977776665543
No 161
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=76.09 E-value=16 Score=22.59 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=42.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCH----HHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY----DDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~----eda~~Ai~~l 78 (188)
+|.|.||.-.--...|++.+...-.|..+.+-.... ...|+|... +++.++|+++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~--~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK--TVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC--EEEEEEecCCCCHHHHHHHHHHh
Confidence 467888888888889999999988888887766554 688888743 6777777653
No 162
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=74.04 E-value=16 Score=25.98 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHhhcCCCeeEEEEEeC-----CCCc--------------EEEEEeCCHHHHHHHHHHc
Q 029768 36 DLKDHMRRAGDVCFSQVFRD-----RGGM--------------TGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 36 dL~~~F~~~G~i~~~~i~~~-----~~~~--------------~afV~F~~~eda~~Ai~~l 78 (188)
...++|.+||-+..++...+ +.+. |.+|+|.+.+..+.|..++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 34578999998777665443 1111 9999999999988887654
No 163
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=73.32 E-value=6.3 Score=25.97 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=40.4
Q ss_pred HHHHHHhhcCC-CeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeeccC
Q 029768 35 QDLKDHMRRAG-DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 99 (188)
Q Consensus 35 ~dL~~~F~~~G-~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~~ 99 (188)
++|++-|.+.| ++..+..+...++. .-||+.+...+... -|+=+.|++ ..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~----~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGG----QRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCC----eeEEEecCcc
Confidence 46788888888 68888888777653 66788776655444 245577888 5788875543
No 164
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=73.27 E-value=25 Score=23.60 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccce
Q 029768 27 GLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~ 82 (188)
-+|.-+..+||+.... .||.-..+..+.+ --.|-..+++|+++||+.++-..
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~----eL~iPl~~Q~DLDkAie~ld~s~ 67 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN----ELLIPLKNQEDLDRAIELLDRSP 67 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc----cEEEeccCHHHHHHHHHHHccCc
Confidence 5777788889887665 5898776665544 36788899999999999887643
No 165
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=73.14 E-value=8.2 Score=24.90 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=15.2
Q ss_pred HHHHHHHhhcCCCeeEEEE
Q 029768 34 WQDLKDHMRRAGDVCFSQV 52 (188)
Q Consensus 34 ~~dL~~~F~~~G~i~~~~i 52 (188)
.++|+++|++.|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999865544
No 166
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=72.89 E-value=2.1 Score=34.97 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=27.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 50 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~ 50 (188)
..-.||+-|||..+|++.|..+.+++|-+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44579999999999999999999999966544
No 167
>PRK10905 cell division protein DamX; Validated
Probab=72.20 E-value=23 Score=30.32 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=42.7
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc--EEEE--EeCCHHHHHHHHHHccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIV--DYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV--~F~~~eda~~Ai~~lng 80 (188)
+|........|.|-|+.+. +++.|++|..+.|--.++......+|. |-++ .|.+.++|+.||..|-.
T Consensus 238 ~~L~sapa~~YTLQL~A~S---s~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 238 GSLKSAPSSHYTLQLSSSS---NYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred hHHhcCCCCceEEEEEecC---CHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 4555556777888888775 457777777776532222222333443 3333 48999999999998753
No 168
>PRK11901 hypothetical protein; Reviewed
Probab=70.64 E-value=22 Score=30.54 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=40.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCC-CCc--EEEE--EeCCHHHHHHHHHHcccc
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GGM--TGIV--DYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~-~~~--~afV--~F~~~eda~~Ai~~lng~ 81 (188)
......|+|=|..+ ..++.|++|..+.+ +..+++.... ++. |.+| .|.+.++|..||..|-..
T Consensus 240 s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 240 SAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred cCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 34466777777665 45888988888775 3333343322 222 4433 489999999999987543
No 169
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=69.48 E-value=33 Score=23.79 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHh----------hcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 27 GLPSSASWQDLKDHM----------RRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 27 nLp~~~t~~dL~~~F----------~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
++|.+++.+++.++- .+-|.+..+.-+.+..++++.+.-++.+++...|..|
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sL 71 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSL 71 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhC
Confidence 789999988877653 3458888887766655558888888999988776544
No 170
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=69.29 E-value=3.7 Score=35.36 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
....|...+|. ..+|-+++.+.|.|..-++...=+-+.|||....+++++++++.|++.
T Consensus 264 l~a~id~~~~~--~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 264 LGAVIDKPSWP--PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred ceEEEcCCCCC--CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 44444433333 357888889999887766655434338999999999999999999876
No 171
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.59 E-value=4.1 Score=31.99 Aligned_cols=72 Identities=10% Similarity=0.118 Sum_probs=47.7
Q ss_pred cEEEEeCCCCCC--C---HHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 21 YRVLVTGLPSSA--S---WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 21 ~~v~V~nLp~~~--t---~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..|++++|+..+ + ....+.+|.+|-+.....++.... +--|.|.+++.|..|..+++...|.|+ ..++..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfr--rvRi~f~~p~~a~~a~i~~~~~~f~~~---~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFR--RVRINFSNPEAAADARIKLHSTSFNGK---NELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhc--eeEEeccChhHHHHHHHHhhhcccCCC---ceEEEE
Confidence 467888887763 2 223445666666554444433322 556789999999999999999999995 255554
Q ss_pred ec
Q 029768 96 EY 97 (188)
Q Consensus 96 ~~ 97 (188)
.+
T Consensus 86 fa 87 (193)
T KOG4019|consen 86 FA 87 (193)
T ss_pred Ec
Confidence 33
No 172
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=68.08 E-value=14 Score=31.30 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=42.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-----------cEEEEEeCCHHHHHHH
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-----------MTGIVDYTSYDDMKYA 74 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-----------~~afV~F~~~eda~~A 74 (188)
.|.+.||...++-.++...|-+||+|+.|.++.+... ....+.|-+.+.|..-
T Consensus 17 SLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 17 SLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred HHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 4778899999999999999999999999999987611 1778888888776544
No 173
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=67.28 E-value=21 Score=25.46 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=27.2
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCc--EEEEEeCCHHHHHHHH
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAI 75 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV~F~~~eda~~Ai 75 (188)
-|.+|.+++.++|- ..--|..+..++ ||++++.+.+....+|
T Consensus 25 vWPE~~a~lk~agi-~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 25 VWPELLALLKEAGI-RNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred ccHHHHHHHHHcCC-ceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 35677888888874 444566665433 9999999555444443
No 174
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=66.87 E-value=12 Score=24.75 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=34.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
+..||+.++ .+++. +.+||.|.++--... |+ |.|.|.++++..+++|....|=
T Consensus 3 gliVyl~~~------k~~r~-L~kfG~i~Y~Skk~k----Yv-vlYvn~~~~e~~~~kl~~l~fV 55 (71)
T PF09902_consen 3 GLIVYLYSL------KDARQ-LRKFGDIHYVSKKMK----YV-VLYVNEEDVEEIIEKLKKLKFV 55 (71)
T ss_pred EEEEEEech------HhHHh-HhhcccEEEEECCcc----EE-EEEECHHHHHHHHHHHhcCCCe
Confidence 345666554 34443 468999987643221 54 5688999999999988766543
No 175
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.49 E-value=2.1 Score=35.92 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.7
Q ss_pred CCCcEEEEeCCCCC------------CCHHHHHHHhhcCCCeeEEEEEe
Q 029768 18 RSDYRVLVTGLPSS------------ASWQDLKDHMRRAGDVCFSQVFR 54 (188)
Q Consensus 18 ~~~~~v~V~nLp~~------------~t~~dL~~~F~~~G~i~~~~i~~ 54 (188)
...-+||+.+||-. .+++-|...|..||.|..|+|..
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34456788777753 46677999999999998888753
No 176
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=66.11 E-value=21 Score=21.48 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDV 47 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i 47 (188)
++.++|.+.......++|++++..+|.-
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 3678888887789999999999999864
No 177
>PRK02886 hypothetical protein; Provisional
Probab=66.03 E-value=12 Score=25.86 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
.+.+..||+.+| .+++. +.+||.|.++--... |+ |.|.|.++|+..+++|....|
T Consensus 4 ~R~glIVyl~~~------k~~r~-LrkyG~I~Y~Skr~k----Yv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 4 NRQGIIVWLHSL------KQAKQ-LRKFGNVHYVSKRLK----YA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred CeeEEEEEEeec------HhHHH-HhhcCcEEEEecccc----EE-EEEECHHHHHHHHHHHhcCCC
Confidence 455667777655 23332 468999987642221 44 668899999999998876654
No 178
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=64.91 E-value=24 Score=22.97 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=29.6
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCCc---EEEEEeC-CHHHHHHHHHHccc
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGGM---TGIVDYT-SYDDMKYAIRKLDR 80 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~~---~afV~F~-~~eda~~Ai~~lng 80 (188)
.-.++-+.|..+| .++.++--..+... +-||+|+ ..+++++||+.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3566777888886 45555433322222 5567777 55667888887754
No 179
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=63.45 E-value=16 Score=23.89 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=38.2
Q ss_pred HHHHHHhhcCC-CeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeeccC
Q 029768 35 QDLKDHMRRAG-DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 99 (188)
Q Consensus 35 ~dL~~~F~~~G-~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~~ 99 (188)
++|++-|...| +|..+.-+....++ .-||+.+...+...+ |+=..|++ ..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~----~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCG----QRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCC----eEEEEecCCC
Confidence 46777788777 57777666665332 778888877663333 44567887 5788775543
No 180
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=63.16 E-value=42 Score=22.33 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=39.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-------CCCeeEEEEEeCCCCc--EEEEEeCCHHHHHHHHHHcccceec
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-------~G~i~~~~i~~~~~~~--~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
|..-+||..+|.++|.++..+ +..|..+......+.+ ||+.+=.++|.+.++-++- |...+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~d 72 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPAD 72 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCcc
Confidence 456789999999998887543 3355555544443322 6766667888888777653 65544
No 181
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=61.90 E-value=42 Score=21.89 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=37.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CCCe-eEEEEE-eCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AGDV-CFSQVF-RDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G~i-~~~~i~-~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
++.-.||..++.++|.....+ |+.. ..+.|. .|..+ -+|...+.+|+..|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg--d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG--DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC--CEEEecCHHHHHHHHHHHH
Confidence 445568889999999877664 5431 122332 24443 4899999999999998654
No 182
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=61.87 E-value=29 Score=30.83 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
||+|++++.+.+......++|.++...
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccc
Confidence 889999999999999999999988763
No 183
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.23 E-value=23 Score=32.09 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=45.5
Q ss_pred CCCCCCcEEEEeCCCCCCCH---HHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 15 VSRRSDYRVLVTGLPSSASW---QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~---~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
||.+.+..| ||||+.-... ..|.++=.+||+|..+++-. .-+|...+.+.|+.|+.+ |+.++.++
T Consensus 28 PPGP~~lPi-IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~-----~~~Vviss~~~akE~l~~-~d~~fa~R 95 (489)
T KOG0156|consen 28 PPGPPPLPI-IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS-----VPVVVISSYEAAKEVLVK-QDLEFADR 95 (489)
T ss_pred CcCCCCCCc-cccHHHcCCCchhHHHHHHHHHhCCeEEEEecC-----ceEEEECCHHHHHHHHHh-CCccccCC
Confidence 333444444 8998776443 45666666899998766643 356888899999999964 78888883
No 184
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.02 E-value=53 Score=25.05 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=37.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC---CCeeEEEEEeCCCCc--------------EEEEEeCCHHH
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGM--------------TGIVDYTSYDD 70 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~---G~i~~~~i~~~~~~~--------------~afV~F~~~ed 70 (188)
.+|++.-++..+++++..+..++- +++..+.+...++.. |-+|.|++-+.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 799999999999999999998864 567777666554321 77788887544
No 185
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=58.80 E-value=44 Score=21.81 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=30.4
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCCc---EEEEEeC---CHHHHHHHHHHccc
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGGM---TGIVDYT---SYDDMKYAIRKLDR 80 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~~---~afV~F~---~~eda~~Ai~~lng 80 (188)
.-.++-++|.++| .|..+......... .-||+++ +.++++++++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3566778888886 67777655443322 4456666 35677788877665
No 186
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=58.64 E-value=12 Score=31.47 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.2
Q ss_pred EEEEeCCHHHHHHHHHHccccee
Q 029768 61 GIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 61 afV~F~~~eda~~Ai~~lng~~l 83 (188)
|||+|++..+|..|++.+.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 79999999999999986655543
No 187
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=58.24 E-value=2 Score=34.90 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=51.5
Q ss_pred cEEEEeC----CCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecc
Q 029768 21 YRVLVTG----LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 21 ~~v~V~n----Lp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.+++.|| |...++++.+...|+..|+|..+.+..+.++. ++||++.-....-.|+..+++.++.-
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 4566667 77778888899999999999888887766542 99999998888888888888776544
No 188
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=57.82 E-value=50 Score=21.53 Aligned_cols=54 Identities=31% Similarity=0.511 Sum_probs=36.8
Q ss_pred eCCCCCCCHHHHHHHhhc-CCCe-eEEEE-EeCCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 26 TGLPSSASWQDLKDHMRR-AGDV-CFSQV-FRDRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 26 ~nLp~~~t~~dL~~~F~~-~G~i-~~~~i-~~~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
-.++.+++.++|.+...+ |+.. ..+.| ..|..+ -.|...+.+|++.|++.++..
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg--D~V~i~sd~Dl~~a~~~~~~~ 72 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG--DLVTISSDEDLQEAIEQAKES 72 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS--SEEEESSHHHHHHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC--CEEEeCCHHHHHHHHHHHHhc
Confidence 457788899998877664 5542 22222 234443 579999999999999887654
No 189
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=57.36 E-value=49 Score=22.69 Aligned_cols=44 Identities=9% Similarity=-0.064 Sum_probs=30.9
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
..+.++++++++| +|+.+.+....---+..+++.+.+.|.++.-
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l 65 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASL 65 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHH
Confidence 3456777888765 7888877765532277888888888776653
No 190
>PRK02302 hypothetical protein; Provisional
Probab=56.73 E-value=22 Score=24.68 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
.+.+..||+..| .+++. +.+||.|.++--... |+ |.|.|.++|+..+++|....|
T Consensus 6 ~R~glIVyl~~~------k~~r~-LrkfG~I~Y~Skk~k----Yv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 6 ERIGLIVYLYYN------RDARK-LSKYGDIVYHSKRSR----YL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred ceeEEEEEEeec------HhHHH-HhhcCcEEEEecccc----EE-EEEECHHHHHHHHHHHhcCCC
Confidence 345566777655 23332 468999987642221 54 668899999999998876654
No 191
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=56.59 E-value=49 Score=27.05 Aligned_cols=46 Identities=11% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCCcEEEEeCCCCC--CCHHHHHHHhhcCCCee----EEEEEeCCCCcEEEEEeC
Q 029768 18 RSDYRVLVTGLPSS--ASWQDLKDHMRRAGDVC----FSQVFRDRGGMTGIVDYT 66 (188)
Q Consensus 18 ~~~~~v~V~nLp~~--~t~~dL~~~F~~~G~i~----~~~i~~~~~~~~afV~F~ 66 (188)
+.+..|+|--|..+ =|..+|+.+|.++|--. .+..+.++ .|+|+|.
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~---kG~i~~~ 143 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR---KGVIEVP 143 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec---ceEEEEC
Confidence 46688888888766 57899999999987422 24445554 5888885
No 192
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=55.44 E-value=70 Score=26.31 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCC--CCHHHHHHHhhcCCC-ee---EEEEEeCCCCcEEEEEeC----CHHHHHHH
Q 029768 18 RSDYRVLVTGLPSS--ASWQDLKDHMRRAGD-VC---FSQVFRDRGGMTGIVDYT----SYDDMKYA 74 (188)
Q Consensus 18 ~~~~~v~V~nLp~~--~t~~dL~~~F~~~G~-i~---~~~i~~~~~~~~afV~F~----~~eda~~A 74 (188)
+.+..|+|-.|..+ =|..+|+..|.++|- +. .|.++.++ .|+|+|. +.+++..|
T Consensus 92 P~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~---kGvi~~~~~~~~ed~l~e~ 155 (241)
T COG0217 92 PGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDR---KGVIVVEKNEIDEDELLEA 155 (241)
T ss_pred CCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEec---cEEEEECCCCCCHHHHHHH
Confidence 56788999999665 688999999999873 22 45566665 4666666 44554443
No 193
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.55 E-value=2 Score=38.19 Aligned_cols=64 Identities=8% Similarity=-0.069 Sum_probs=47.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceecc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.+.|+..||..+++.+|.-+|..||.|..+++...-.++ .+||.... .++..+|+.+.-+.+.|
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~ 71 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFE 71 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhh
Confidence 345778899999999999999999999988876544332 66666543 45677777666666666
No 194
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=53.43 E-value=11 Score=34.36 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=41.3
Q ss_pred eCCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 26 TGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 26 ~nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
.++|+.+-...+...+. .++..... ....+...++++.|++..++.+|++.++|..+.+ ..+.|...
T Consensus 31 e~~~~~~~q~~~~k~~~~~~~~~~s~-tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~----~~~~~~~~ 98 (534)
T KOG2187|consen 31 EMIPTFIGQKQLNKVLLKILRDVKSK-TKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKG----FILRVQLG 98 (534)
T ss_pred eccCchhhhhHHHhhhhhhccccccc-CCCCCCCCceEEEEeccchhhhHHHHHhhhhhhc----chhhhhhc
Confidence 34555555555444433 33332221 1111122399999999999999999999999888 45555543
No 195
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=52.86 E-value=36 Score=23.43 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=32.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCC-----CC---------cEEEEEeCCHH
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDR-----GG---------MTGIVDYTSYD 69 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~-----~~---------~~afV~F~~~e 69 (188)
.|+-.++..++..||++.|++ || +|..|..+.-. .+ .-|+|++...+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 445567889999999999987 66 46666655433 11 17888887653
No 196
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=52.59 E-value=78 Score=22.13 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=43.1
Q ss_pred CCCCCCCCCCcEEEEeC------CCCCCCHHHHHHHhhc-CCCeeEEEEEe--CCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 11 GSRGVSRRSDYRVLVTG------LPSSASWQDLKDHMRR-AGDVCFSQVFR--DRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~n------Lp~~~t~~dL~~~F~~-~G~i~~~~i~~--~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
|..-|....+..-|||+ ++.+++..||.....+ ++.-..+.|.. ..+..-+.|...+-+|+...++.++..
T Consensus 6 G~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~ 85 (97)
T cd06410 6 GRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRL 85 (97)
T ss_pred CEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHHhhccc
Confidence 33434334444457765 7888999998877664 33211122222 111114799999999999999887654
No 197
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=52.15 E-value=12 Score=21.48 Aligned_cols=17 Identities=18% Similarity=0.222 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHhhcCCC
Q 029768 30 SSASWQDLKDHMRRAGD 46 (188)
Q Consensus 30 ~~~t~~dL~~~F~~~G~ 46 (188)
.+|++++|++.|.++.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999998754
No 198
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.12 E-value=63 Score=20.90 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=35.0
Q ss_pred CCC-CCCCHHHHHHHhhc-CCCe-eEEEEE-eCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 27 GLP-SSASWQDLKDHMRR-AGDV-CFSQVF-RDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 27 nLp-~~~t~~dL~~~F~~-~G~i-~~~~i~-~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
.++ ..++.++|.+...+ |+.. ..+.|. .|..+ -+|...+.+|++.|++.+.
T Consensus 15 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~--d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 15 VVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDG--DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCC--CEEEeCCHHHHHHHHHHHh
Confidence 455 88999999887664 5532 222332 33333 7899999999999998764
No 199
>PF14893 PNMA: PNMA
Probab=50.80 E-value=15 Score=31.57 Aligned_cols=49 Identities=14% Similarity=0.363 Sum_probs=30.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhc-CCCeeEEEEE-----eCCCCcEEEEEeCCH
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVF-----RDRGGMTGIVDYTSY 68 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~-~G~i~~~~i~-----~~~~~~~afV~F~~~ 68 (188)
...|.|.+||.+|+++||++.+.. .-++-...+. .+.+..-|+|+|...
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 356889999999999999998764 2122111221 111223788888754
No 200
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=50.34 E-value=23 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred HhhcCCCeeEEEEEeCCC--Cc-----------------EEEEEeCCHHHHHHHHHHc
Q 029768 40 HMRRAGDVCFSQVFRDRG--GM-----------------TGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 40 ~F~~~G~i~~~~i~~~~~--~~-----------------~afV~F~~~eda~~Ai~~l 78 (188)
+|.+||.+.++++.-+.. |. |..++|.+.+..+.|..+|
T Consensus 29 v~kE~Gal~~VEc~~dDVP~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 29 VWKEFGALRYVECWADDVPYGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred HHHHhCchhhhhhcccCCCCCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHHh
Confidence 567778776665544311 10 9999999999888887653
No 201
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=49.99 E-value=61 Score=20.19 Aligned_cols=49 Identities=10% Similarity=0.010 Sum_probs=30.7
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccce
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~ 82 (188)
.-.+|-++|.+.| .|.++.+....+..+--+.+++.+.|.++|+. +|.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4467788888877 68877765543322444456777777777754 3444
No 202
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=49.99 E-value=66 Score=20.55 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=30.3
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCC--c-EEEEEeCC---HHHHHHHHHHccc
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGG--M-TGIVDYTS---YDDMKYAIRKLDR 80 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~--~-~afV~F~~---~eda~~Ai~~lng 80 (188)
.-.++-+.|.++| .|..+.-...... . .-||+++. ...++.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3567778888886 5776654433322 2 55677764 5667777776644
No 203
>PRK00110 hypothetical protein; Validated
Probab=49.61 E-value=73 Score=26.23 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=37.3
Q ss_pred CCCcEEEEeCCCCC--CCHHHHHHHhhcCCC-e---eEEEEEeCCCCcEEEEEeCC--HHH-HHHHHH
Q 029768 18 RSDYRVLVTGLPSS--ASWQDLKDHMRRAGD-V---CFSQVFRDRGGMTGIVDYTS--YDD-MKYAIR 76 (188)
Q Consensus 18 ~~~~~v~V~nLp~~--~t~~dL~~~F~~~G~-i---~~~~i~~~~~~~~afV~F~~--~ed-a~~Ai~ 76 (188)
+.+..|+|--|..+ =|..+|+.+|.++|- + -.+..+.++ .|.|+|.. .++ ++.||+
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~---kG~i~~~~~~~d~~~e~aie 156 (245)
T PRK00110 92 PGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR---KGVIVIEPLDEDELMEAALE 156 (245)
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc---ceEEEeCCCCHHHHHHHHHh
Confidence 45678888888766 578999999999864 3 224455554 57888863 344 344554
No 204
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=49.52 E-value=34 Score=29.67 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHHhhc-CCCeeEEEEEeC---CCC------cEEEEEeCCHH
Q 029768 27 GLPSSASWQDLKDHMRR-AGDVCFSQVFRD---RGG------MTGIVDYTSYD 69 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~-~G~i~~~~i~~~---~~~------~~afV~F~~~e 69 (188)
.|...++.+||.++|.+ |..-..|+|+.. +.. +||.|-|...+
T Consensus 252 ~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 252 KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 45566899999999986 665556666553 111 27877776544
No 205
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=48.76 E-value=65 Score=20.47 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHhhcCCCeeEEEEEeCCC--Cc---EEEEEeCCHHHHHHHHHH-cccceec
Q 029768 36 DLKDHMRRAGDVCFSQVFRDRG--GM---TGIVDYTSYDDMKYAIRK-LDRSEFR 84 (188)
Q Consensus 36 dL~~~F~~~G~i~~~~i~~~~~--~~---~afV~F~~~eda~~Ai~~-lng~~l~ 84 (188)
||++.+.++..|..|-++...+ .+ +|||.. +.+++.+.|+. |...++-
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHHHS-GGGS-
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhhhCCCccee
Confidence 6788888988888887655432 22 889888 44555555543 4444444
No 206
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=47.58 E-value=62 Score=19.53 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=29.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEE--EEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTG--IVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~a--fV~F~~~eda~~Ai~~l 78 (188)
|+|-.-...-...+|-++|.++| .|..+.+......+++ .+.+.+. .....+++|
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-~~~~l~~~l 59 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-VPEEVLEEL 59 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-CCHHHHHHH
Confidence 33433333345678889999886 6777776655422244 3444443 333444443
No 207
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=47.13 E-value=20 Score=27.77 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=20.7
Q ss_pred EeCCCCCCCHHH---HHHHhhcCCCeeEEEEEeC
Q 029768 25 VTGLPSSASWQD---LKDHMRRAGDVCFSQVFRD 55 (188)
Q Consensus 25 V~nLp~~~t~~d---L~~~F~~~G~i~~~~i~~~ 55 (188)
|.+||...+..+ +.+||..||.-.-+.+...
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~v~~~~lG 86 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHYVTSVTLG 86 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEEEEEEEEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEEEEEEEEc
Confidence 567888888888 7889999998555555544
No 208
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=47.07 E-value=44 Score=22.90 Aligned_cols=66 Identities=8% Similarity=0.080 Sum_probs=24.0
Q ss_pred EEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHcccceeccccceeEEEEee
Q 029768 24 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 24 ~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
-.|+|.+.-- .+++--+++-..|-.+.|. .-...|||.|+. .+++..+++.|....+.- ..|+|++
T Consensus 4 kfg~It~eeA-~~~QYeLsk~~~vyRvFiN--gYar~g~VifDe~kl~~e~lL~~le~~kpEVi~e----k~lTveE 73 (88)
T PF11491_consen 4 KFGNITPEEA-MVKQYELSKNEAVYRVFIN--GYARNGFVIFDESKLSKEELLEMLEEFKPEVIEE----KELTVEE 73 (88)
T ss_dssp E--S-TTTTT-HHHHHTTTTTTTB--------TTSS--EEE--B-S-SHHHH---HHHTTT-SS-----------SS
T ss_pred ccCCCCHHHH-HHHHHHhhcccceeeeeec--ccccceEEEECcccCCHHHHHHHHHhcChhheee----ccccHHH
Confidence 3466644422 1233334555566555442 222279999985 588888999998887776 5777764
No 209
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=46.64 E-value=70 Score=19.87 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=31.6
Q ss_pred EEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeC--C--HHHHHHHHHHcccc
Q 029768 24 LVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYT--S--YDDMKYAIRKLDRS 81 (188)
Q Consensus 24 ~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~--~--~eda~~Ai~~lng~ 81 (188)
+|.+-...-.-.++-++|.++| .|..+.+......+.+++.|. + .+++.++|+.+.|.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v 65 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGI 65 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCc
Confidence 3333334445567888898887 576665544322224444443 2 34555666665543
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=46.63 E-value=35 Score=28.36 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=22.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDV 47 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i 47 (188)
.....|+|||++++..-|..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3456799999999999999998875444
No 211
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=46.59 E-value=72 Score=19.97 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=36.3
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
..+++.+.+.++-.|..|..+.+...-...|.+.+.++++.-+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVTGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEeCCCCEEEEEEECCHHHHHHHHHH
Confidence 467888888999999999888764433788899999999998655
No 212
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=45.44 E-value=87 Score=21.61 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=25.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeC
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRD 55 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~ 55 (188)
..|+-.++..++..||++.|++ || +|..|..+.-
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 3555567889999999999997 66 5666665544
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=45.37 E-value=23 Score=28.96 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhh--cCCCee
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMR--RAGDVC 48 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~--~~G~i~ 48 (188)
...-++|+|||+.++..-|..++. .+|.+.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccc
Confidence 345688999999999999999887 355443
No 214
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=64 Score=22.53 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc-CCC-eeEEEEEeCCCC----c-EEEEEeCCHHHHHHHHHHcccce
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRR-AGD-VCFSQVFRDRGG----M-TGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~-~G~-i~~~~i~~~~~~----~-~afV~F~~~eda~~Ai~~lng~~ 82 (188)
.+..||. ++...|+...|.+.|.. .|+ .....++.+... . =+-..|++-++++...+++.|..
T Consensus 33 d~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~t 102 (103)
T COG5227 33 DGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGAT 102 (103)
T ss_pred CCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCcc
Confidence 3444544 78889999999999985 564 555555554221 0 35567899999998888876653
No 215
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.95 E-value=53 Score=22.53 Aligned_cols=43 Identities=7% Similarity=-0.070 Sum_probs=26.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcC--CCeeEEEEEeCCCCcEEEEEe
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDY 65 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~--G~i~~~~i~~~~~~~~afV~F 65 (188)
-|||||++..+.+.-.+.+...+ |.++-+.-..+ ..+|+|-++
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEe
Confidence 48999999998866655555544 44443333333 223888776
No 216
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=43.83 E-value=9.3 Score=24.31 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=32.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE-EEEEeCCCCc-EEEEEeCCHHHHHHHHHHcc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGM-TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~-~~i~~~~~~~-~afV~F~~~eda~~Ai~~ln 79 (188)
..+.|.|+.+...-..+.+..-+...|.-.. +.+......- +-+-.|.+.++|+.++.+|.
T Consensus 3 ~~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 3 SGYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp -EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 4577888877655444444444444454322 2222222211 22235899999999999887
No 217
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.60 E-value=94 Score=21.29 Aligned_cols=48 Identities=6% Similarity=0.043 Sum_probs=27.5
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCC--c-EEEEEeCC--HHHHHHHHHHccc
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGG--M-TGIVDYTS--YDDMKYAIRKLDR 80 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~--~-~afV~F~~--~eda~~Ai~~lng 80 (188)
.-.++-..|..+| .+..++--..+.. . +-||+|+- .+.++.||+.|..
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 3456777888886 4555443322222 2 55677773 4566777776643
No 218
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=43.24 E-value=92 Score=21.40 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=34.1
Q ss_pred EEEeCCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
|.+--+|..++.++|.+-+. +|+--..+.|...-.| -+|+..+.+|++.||...
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDEG--D~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDDG--DMITMGDQDDLDMAIDTA 67 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcCC--CCccccCHHHHHHHHHHH
Confidence 44446899999888876554 3442222223222123 678899999999998754
No 219
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=41.49 E-value=76 Score=19.12 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCHHHHHHHhhcCC-CeeEEEEEeCCC-CcEEEEEe-CCHHHHHHHHHHc
Q 029768 32 ASWQDLKDHMRRAG-DVCFSQVFRDRG-GMTGIVDY-TSYDDMKYAIRKL 78 (188)
Q Consensus 32 ~t~~dL~~~F~~~G-~i~~~~i~~~~~-~~~afV~F-~~~eda~~Ai~~l 78 (188)
-.-.+|-.+|.+.| .|..+.+..... ..+.++.+ .+.++++.+++.|
T Consensus 12 G~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 12 GILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp THHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHH
Confidence 34467788888887 677777766654 22344333 2344455554444
No 220
>PRK12450 foldase protein PrsA; Reviewed
Probab=41.38 E-value=57 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc--cceec
Q 029768 31 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFR 84 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln--g~~l~ 84 (188)
.+|++||+++|..+-+- +. ...|.+++.+.|+.+++.+. |..|.
T Consensus 132 ~Vtd~evk~~y~~~~~~--~~--------~~~I~~~~~~~A~~i~~~l~~~G~dF~ 177 (309)
T PRK12450 132 TISKKDYRQAYDAYTPT--MT--------AEIMQFEKEEDAKAALEAVKAEGADFA 177 (309)
T ss_pred CCCHHHHHHHHHHhCcc--ce--------eEEEEeCCHHHHHHHHHHHHhcCCCHH
Confidence 48999999999987421 11 34578899999999999985 55544
No 221
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.09 E-value=16 Score=25.26 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=19.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHh
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHM 41 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F 41 (188)
...+|.|.|||..+.+++|+|.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 45689999999999999999764
No 222
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=40.59 E-value=46 Score=25.28 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=37.2
Q ss_pred CcEEEEeCCC-CCCCHHHHHHHhhc-CCCee-EEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 20 DYRVLVTGLP-SSASWQDLKDHMRR-AGDVC-FSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 20 ~~~v~V~nLp-~~~t~~dL~~~F~~-~G~i~-~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
-+-+|+|+|. +..+-++|+..... |++.. .+.....+..+.+.|+|.-+-++...|..|-.
T Consensus 4 ifla~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 4 IFLAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 3567888886 22444555555554 44322 23333333334899999999988888876644
No 223
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.50 E-value=90 Score=19.40 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=29.6
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCCcEE--EEEeC--CHHHHHHHHHHcccceec
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGGMTG--IVDYT--SYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~~~a--fV~F~--~~eda~~Ai~~lng~~l~ 84 (188)
.-.+|.++|.++| .|..+........+.+ +|.++ +.+++.++|++ +|.++.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCeee
Confidence 4567788898887 5776654443222244 34443 56667777754 355543
No 224
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=40.40 E-value=78 Score=21.96 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHhh-------cC-CCeeEEEEEeC----------CCCcEEEEEeCCHHHHHHHHHH
Q 029768 28 LPSSASWQDLKDHMR-------RA-GDVCFSQVFRD----------RGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~-------~~-G~i~~~~i~~~----------~~~~~afV~F~~~eda~~Ai~~ 77 (188)
|.+++++++++++.. +. |+|..++-.-. ..+.|.++.|+...++-+.++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 567777777665544 33 35655542111 1111788889876666666653
No 225
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=40.11 E-value=93 Score=28.22 Aligned_cols=46 Identities=15% Similarity=-0.023 Sum_probs=32.7
Q ss_pred HHHHHHHhh----cCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcc
Q 029768 34 WQDLKDHMR----RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 34 ~~dL~~~F~----~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~ln 79 (188)
--+|..+|- .+|-|+.+.+...+... ..++.|.+.++|..|+..+-
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 456777665 46778887776654422 66788999999999987754
No 226
>CHL00030 rpl23 ribosomal protein L23
Probab=39.42 E-value=1.3e+02 Score=20.93 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=25.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCC
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDR 56 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~ 56 (188)
..|+--++.+++..+|++.|++ || +|..|..+.-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 3555567889999999999987 66 57777665543
No 227
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=39.38 E-value=35 Score=23.50 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=25.4
Q ss_pred EEEEeCCCCCCCH---HHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC
Q 029768 22 RVLVTGLPSSASW---QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS 67 (188)
Q Consensus 22 ~v~V~nLp~~~t~---~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~ 67 (188)
-||||+++..+.+ +.|.+.+.+-|.++-+.-..+..| |+|-++-+
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G-~~~~t~G~ 74 (87)
T TIGR01873 27 GVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPG-FEFFTLGE 74 (87)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCC-cEEEecCC
Confidence 4899999888653 344444322355554444333333 77766554
No 228
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=39.26 E-value=9.3 Score=24.89 Aligned_cols=54 Identities=4% Similarity=0.111 Sum_probs=31.7
Q ss_pred CCcEEEEeC-CCCCCCH-HHHHHHhhcCCCeeEE-EEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 19 SDYRVLVTG-LPSSASW-QDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 19 ~~~~v~V~n-Lp~~~t~-~dL~~~F~~~G~i~~~-~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
.||.||--. --..+.. ++|++.|..+.....+ .+ .+|.-|++.++|..+++.+.
T Consensus 9 aGyaLF~v~~~~~~~~~~~~v~~~~~~~~~f~k~vkL-------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 9 AGYALFKVKDEKDEIGSDEEVQKSFSDPEKFSKIVKL-------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred CeeeeeEEechhhhhccHHHHHHHHcCHHHHhhhhhh-------hhccCCCCHHHHHHHHHHhh
Confidence 456666533 1112211 6788877764432211 11 69999999999888876553
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=39.25 E-value=23 Score=26.02 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=27.0
Q ss_pred EEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCC
Q 029768 23 VLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 56 (188)
Q Consensus 23 v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~ 56 (188)
|-|-|||.. .+++-|+.+-+.+|++..++.....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 455799998 6777788999999999988776543
No 230
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.24 E-value=32 Score=27.73 Aligned_cols=9 Identities=0% Similarity=0.634 Sum_probs=8.2
Q ss_pred EEEEEeCCH
Q 029768 60 TGIVDYTSY 68 (188)
Q Consensus 60 ~afV~F~~~ 68 (188)
|+||+|++.
T Consensus 111 Y~FieFD~~ 119 (216)
T KOG0862|consen 111 YAFIEFDTF 119 (216)
T ss_pred eeEEehhHH
Confidence 999999975
No 231
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=39.02 E-value=1.1e+02 Score=19.78 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~l 78 (188)
..|+|-++.-.--...++..+.....|..+++-.+.. .++|+|++ .+++..||+..
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~--~~~V~~d~~~~~~~~i~~ai~~a 63 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKG--TATVTFDSNKVDIEAIIEAIEDA 63 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccC--eEEEEEcCCcCCHHHHHHHHHHc
Confidence 4677778877777788889999888888888877755 58999987 45666666543
No 232
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=38.72 E-value=1.1e+02 Score=27.46 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=41.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC----CeeEE-----------EEEeCCCCc-EEEEEeCCHHHHHHHHHHcccce
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAG----DVCFS-----------QVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G----~i~~~-----------~i~~~~~~~-~afV~F~~~eda~~Ai~~lng~~ 82 (188)
.+..|.+.+=-+-++.+-|++++.... .+.-+ .|+.+.++. .+.||.++..++++.|.+.|.-.
T Consensus 96 ~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtGi 175 (460)
T COG1207 96 DGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGI 175 (460)
T ss_pred CCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeeeE
Confidence 345666677777788999998776542 23222 222222222 78899998888888887776544
No 233
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=37.90 E-value=41 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCC
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAG 45 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G 45 (188)
-+.|+|||+.++.+.|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 377999999999999999997444
No 234
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=37.56 E-value=48 Score=27.29 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR 43 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~ 43 (188)
-++|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5779999999998888888764
No 235
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=37.36 E-value=1.2e+02 Score=20.50 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=32.0
Q ss_pred CCCC--CCCHHHHHHHhhcCCCeeEEEEEe-CCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 27 GLPS--SASWQDLKDHMRRAGDVCFSQVFR-DRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 27 nLp~--~~t~~dL~~~F~~~G~i~~~~i~~-~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
.|++ ++++++|++.+.+.-.+..+.|.. |.++ =.|......|++.|++.+.
T Consensus 15 ~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~--e~v~lssd~eLeE~~rl~~ 68 (81)
T cd06396 15 LVSDSENTTWASVEAMVKVSFGLNDIQIKYVDEEN--EEVSVNSQGEYEEALKSAV 68 (81)
T ss_pred EecCCCCCCHHHHHHHHHHHhCCCcceeEEEcCCC--CEEEEEchhhHHHHHHHHH
Confidence 4666 889999998877532333333332 2222 3466777888899987544
No 236
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=37.26 E-value=91 Score=18.50 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=26.5
Q ss_pred HHHHHHhhcCC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHH
Q 029768 35 QDLKDHMRRAG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAI 75 (188)
Q Consensus 35 ~dL~~~F~~~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai 75 (188)
.+|-++|.+.| .|.++.+...... ....+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777776 6877776655412 26666777877776665
No 237
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=37.26 E-value=97 Score=25.64 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=33.9
Q ss_pred CcEEEEeCCCCCC----CHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEe-CCHHHHHHHHHHccccee
Q 029768 20 DYRVLVTGLPSSA----SWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDY-TSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 20 ~~~v~V~nLp~~~----t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F-~~~eda~~Ai~~lng~~l 83 (188)
...||||+|.... -.++|...+-+.+ .++-+.+--...+ ||.-.. .+.||+..+|+++.+..+
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G-~Gt~slk~D~edl~~l~~Hi~~~~f 105 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNG-YGTFSLKDDVEDLKCLLEHIQLCGF 105 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccc-cccccccccHHHHHHHHHHhhccCc
Confidence 4579999986653 3344544444433 2322222111122 443333 478889999987766654
No 238
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=37.19 E-value=1.2e+02 Score=23.66 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCC-eeEEEEEeC--CCCcEEEEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G~-i~~~~i~~~--~~~~~afV~F~~~eda~~Ai~~l 78 (188)
=||.|.+...+-..|.+.|...|- |+.+.=... ...++-+|.|++.+++.+++..+
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 378999999888999998888874 443321110 01128899999999999998754
No 239
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.14 E-value=91 Score=27.17 Aligned_cols=73 Identities=8% Similarity=0.178 Sum_probs=39.0
Q ss_pred cEEEEeCCCCCCC--HHHHHHHhhc-----CC--------CeeEEEEEeCCC---C--c----EEEEEeCCHHHHHHHHH
Q 029768 21 YRVLVTGLPSSAS--WQDLKDHMRR-----AG--------DVCFSQVFRDRG---G--M----TGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 21 ~~v~V~nLp~~~t--~~dL~~~F~~-----~G--------~i~~~~i~~~~~---~--~----~afV~F~~~eda~~Ai~ 76 (188)
..|.|-|||.... ...+..||.+ |. .|..++-...+. + . +-|..|.+.|.+..|..
T Consensus 191 nNiRIiGiPEg~e~~~k~~~~~l~~ii~e~~p~L~~e~~i~IerahR~~~~~~~~~~~PR~iIvKfl~f~~KE~IL~aAR 270 (370)
T PF02994_consen 191 NNIRIIGIPEGEEEEGKGPENFLEEIIPENFPNLPKETDIEIERAHRSPRPKPPKGQRPRPIIVKFLRFQDKEKILKAAR 270 (370)
T ss_dssp TEEEEES----TT--HHHHHHHHHHHHHHH-CHHHHHT---EEEEEEESSSS-TTSSS--EEEEEESSHHHHHHHHHHHH
T ss_pred CceeEEecCCCccccccCHHHHHHHHHHHhCcCcccccchhhhhhhcccCCCCCccCCcCeEEEEecCcccHHHHHHHHH
Confidence 5688999999854 3344444432 32 355554433221 1 1 34445667777777777
Q ss_pred HcccceeccccceeEEEEeec
Q 029768 77 KLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 77 ~lng~~l~g~~~~r~I~V~~~ 97 (188)
.+....+.| ..|.+..|
T Consensus 271 ~~~~~~~~g----~~I~if~D 287 (370)
T PF02994_consen 271 EKGQLTYKG----KRIRIFPD 287 (370)
T ss_dssp HHS-EEETT----EEEEEECT
T ss_pred hcCceeeCC----CceEEeCC
Confidence 776778999 58888755
No 240
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=36.98 E-value=1e+02 Score=20.90 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=35.5
Q ss_pred EEeCCCCCCCHHHHHHHhhcCCCe--eEEEEEe-CCCCcEEEEEeCCHHHHHHHHHHcccce
Q 029768 24 LVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR-DRGGMTGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 24 ~V~nLp~~~t~~dL~~~F~~~G~i--~~~~i~~-~~~~~~afV~F~~~eda~~Ai~~lng~~ 82 (188)
++--+|..++.++|.+...+==++ ..+.+-. +..+ -.+|.. +.+|++.|+....+..
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s-~~~v~l-~d~dle~aws~~~~~~ 72 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEAS-GEDVIL-SDTNMEDVWSQAKDGC 72 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCC-CCccCc-ChHHHHHHHHhhcCCe
Confidence 344678889999988877642222 2233322 2222 245666 7899999998776654
No 241
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=36.52 E-value=88 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCHHHHHHHhhcC-CCeeE---EEEEeCCCC---cEEEEEeCCHHHHHHHHHHc
Q 029768 32 ASWQDLKDHMRRA-GDVCF---SQVFRDRGG---MTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 32 ~t~~dL~~~F~~~-G~i~~---~~i~~~~~~---~~afV~F~~~eda~~Ai~~l 78 (188)
.|..+++++|..- -.|.. .-.+.|+.. .+-||+..+.+++..||+.|
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M 56 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNM 56 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhC
Confidence 5778999999742 12211 011222221 18999999999999999875
No 242
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.25 E-value=1.2e+02 Score=19.77 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=29.5
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCCc---EEEEEeC-CHHHHHHHHHHcccc
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGGM---TGIVDYT-SYDDMKYAIRKLDRS 81 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~~---~afV~F~-~~eda~~Ai~~lng~ 81 (188)
.-.++-..|..+| .+..++--..+... .-||+++ +.+.++.||+.|...
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~~ 66 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKRE 66 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHHh
Confidence 3466778888886 45555433322222 5567766 345788888877554
No 243
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=35.87 E-value=1.5e+02 Score=20.57 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHh----------hcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 27 GLPSSASWQDLKDHM----------RRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 27 nLp~~~t~~dL~~~F----------~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
+||.++..+++.++- ..-|.+..+.-+.+.-.+++...-++.+++...|..| .|... ..|.|..
T Consensus 9 ~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~sL---PL~p~---m~i~Vtp 82 (90)
T TIGR03221 9 NLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLSGL---PLFPY---MDIEVTP 82 (90)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHHhC---CCCcc---eEeEEEE
Confidence 799999988887763 3468888887665443347777778888888876544 44433 3666653
No 244
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=35.56 E-value=2.1e+02 Score=22.26 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=40.1
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhh------c----CCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHcccce
Q 029768 18 RSDYRVLVTGLPSS-ASWQDLKDHMR------R----AGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKLDRSE 82 (188)
Q Consensus 18 ~~~~~v~V~nLp~~-~t~~dL~~~F~------~----~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~lng~~ 82 (188)
..++.|+|.=.|.. +|+.-++.... - +|.+...-...... --++|+. +.+.|.+|+. +-...
T Consensus 79 ~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~G--~ilfei~~~~~~~~~akeAlr-~a~~K 155 (172)
T PRK04199 79 RSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEKG--QKIFTVRVNPEHLEAAKEALR-RAAMK 155 (172)
T ss_pred CcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECcC--CEEEEEEecCCCHHHHHHHHH-Hhhcc
Confidence 34578888777776 44554443222 2 67766544333332 2333333 7788999986 45666
Q ss_pred eccccceeEEEEe
Q 029768 83 FRNAFSRSYVRVR 95 (188)
Q Consensus 83 l~g~~~~r~I~V~ 95 (188)
|... ..|.+.
T Consensus 156 LP~k---~kiv~~ 165 (172)
T PRK04199 156 LPTP---CRIVVE 165 (172)
T ss_pred CCCc---EEEEEe
Confidence 6664 455443
No 245
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=35.50 E-value=81 Score=25.04 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=37.8
Q ss_pred CCHHHHHHHhhcCCC---eeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHcccceec
Q 029768 32 ASWQDLKDHMRRAGD---VCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 32 ~t~~dL~~~F~~~G~---i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
.+.+|+.+.....|. |..+.++....++ -+...-.++++|..+.++|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 577888888877663 6677776655443 3344455789999999999999887
No 246
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=35.45 E-value=1.1e+02 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=27.1
Q ss_pred cEEEEeCCCCCCCHHH--------HHHHhhcCCCeeEEEEEeCCCCc-EEEEEeCC
Q 029768 21 YRVLVTGLPSSASWQD--------LKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTS 67 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~d--------L~~~F~~~G~i~~~~i~~~~~~~-~afV~F~~ 67 (188)
++=||-.||.+++.++ ++++|..+|-+..+-|+.+...+ -|.|-|.+
T Consensus 68 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~ 123 (216)
T PF03389_consen 68 AREFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTT 123 (216)
T ss_dssp EEEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--
T ss_pred eeeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeec
Confidence 4556778999988777 33445667888888888654443 67776664
No 247
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=35.27 E-value=1e+02 Score=18.57 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=26.7
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCCcEE--EEEeCCH-HHHHHHHHHcc
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGGMTG--IVDYTSY-DDMKYAIRKLD 79 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~~~a--fV~F~~~-eda~~Ai~~ln 79 (188)
...+|..+|.+++ .|..+........+.+ ++++... ++++.++++|.
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 13 VLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHh
Confidence 4568888898876 5776665543222222 3333221 66666666664
No 248
>PRK12864 YciI-like protein; Reviewed
Probab=35.04 E-value=1.1e+02 Score=20.76 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=23.8
Q ss_pred CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 45 GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 45 G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
|.+..+--..+..+.++.+++++.++|+.-++ -|-....|
T Consensus 36 G~~~~~Gp~~~~~g~~~i~~a~s~eea~~~~~-~DPy~~aG 75 (89)
T PRK12864 36 GILITLGPTKDLTYVFGIFEAEDEETVRQLIE-ADPYWQNG 75 (89)
T ss_pred CeEEEecCCCCCCCEEEEEEeCCHHHHHHHHH-cCCchhcC
Confidence 55544433333333366778999999987775 34455555
No 249
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=34.92 E-value=28 Score=24.37 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=32.4
Q ss_pred CCcEEEEeCCCCCCC--HHHHHHHhhcCCCeeEEEEEeCCC-Cc----EEEEEeCCHHHHHHHHH
Q 029768 19 SDYRVLVTGLPSSAS--WQDLKDHMRRAGDVCFSQVFRDRG-GM----TGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t--~~dL~~~F~~~G~i~~~~i~~~~~-~~----~afV~F~~~eda~~Ai~ 76 (188)
.+.+|-|+-.....+ .+.|.++|.+.+.|..+.+..-.. ++ +-.|+|.. ++.+..+.
T Consensus 4 ~g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~-~~~~~~~~ 67 (108)
T PF14581_consen 4 KGEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDG-EDIEEIFQ 67 (108)
T ss_pred CCCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccC-hhHHHHHH
Confidence 455666664433222 466888999999998776544333 21 34456666 34444433
No 250
>PLN00168 Cytochrome P450; Provisional
Probab=34.58 E-value=1.2e+02 Score=27.18 Aligned_cols=51 Identities=18% Similarity=-0.059 Sum_probs=34.7
Q ss_pred EEEEeCCCCCC-----CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 22 RVLVTGLPSSA-----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 22 ~v~V~nLp~~~-----t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
--+||||..-. -.+.+.++..+||+|..+.+.. .-+|...+++.++.++.+
T Consensus 43 ~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~-----~~~vvv~dpe~~~~il~~ 98 (519)
T PLN00168 43 VPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGS-----RLSVFVADRRLAHAALVE 98 (519)
T ss_pred CcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCC-----ccEEEECCHHHHHHHHHh
Confidence 44578876321 2345677788999987665421 457778899999998864
No 251
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=34.24 E-value=51 Score=27.72 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=19.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRR 43 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~ 43 (188)
+-+.|+|||+.++...|..++..
T Consensus 102 ~d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 102 FDVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred cCEEEecCCcccCcHHHHHHHhc
Confidence 35789999999999998888865
No 252
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=33.91 E-value=1.7e+02 Score=20.54 Aligned_cols=51 Identities=25% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHcccc
Q 029768 31 SASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~lng~ 81 (188)
+-+++||..+...=|.|.+|.+.-.--|. .|.+...+.+|++.-|++|+..
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhcc
Confidence 34567777777655677777665443233 6677788999998888877654
No 253
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=33.91 E-value=1.8e+02 Score=23.99 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=32.4
Q ss_pred EEEEeC-----CCCCCCHHHHHHHhhcC---CCeeEEEEEeCCCC----------cEEEEEeCCHHHHHHHHHHc
Q 029768 22 RVLVTG-----LPSSASWQDLKDHMRRA---GDVCFSQVFRDRGG----------MTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~n-----Lp~~~t~~dL~~~F~~~---G~i~~~~i~~~~~~----------~~afV~F~~~eda~~Ai~~l 78 (188)
.+.||| ||..++++||+.+=... -.|. .+..+.. .+|+|-.+-.++..+.|+..
T Consensus 61 ~l~~gN~nGllvp~~~~d~El~~l~~~l~d~v~V~---~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~ 132 (247)
T PTZ00136 61 RLTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQ---RVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDV 132 (247)
T ss_pred EEEeecCCeEEcCCcCCHHHHHHHHHhCcCCccEE---EeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHh
Confidence 455665 79999999999664332 2232 2222211 18899877767666666543
No 254
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=33.77 E-value=57 Score=28.21 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=32.6
Q ss_pred CcEEEEeCC--CCC--CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHH
Q 029768 20 DYRVLVTGL--PSS--ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYA 74 (188)
Q Consensus 20 ~~~v~V~nL--p~~--~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~A 74 (188)
..-|||+|= |.. ++.+||+.+...... .+.++.| -||++|.. +++...
T Consensus 146 ~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD----EAY~eF~~-~~~~~l 197 (356)
T COG0079 146 TKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID----EAYIEFSP-ESSLEL 197 (356)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe----CchhhcCC-chhhhh
Confidence 456888864 222 789999999998755 3345556 59999999 444333
No 255
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=33.01 E-value=76 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=19.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRR 43 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~ 43 (188)
+-++|+|+|+.++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 56779999999998888888764
No 256
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=32.96 E-value=1.2e+02 Score=28.47 Aligned_cols=67 Identities=7% Similarity=0.154 Sum_probs=48.6
Q ss_pred EEEEeCC--CCCCCHHHHHHHhhcCCCe-----eEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 22 RVLVTGL--PSSASWQDLKDHMRRAGDV-----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 22 ~v~V~nL--p~~~t~~dL~~~F~~~G~i-----~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
++|| |+ -..++..+|-.++..-+.| -.|+|..+ |.||+... +.++..++.|++..+.| +.|.|
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~----~s~v~~~~-~~~~~~~~~~~~~~~~~----~~~~~ 557 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS----HSTIELPK-GMPGEVLQHFTRTRILN----KPMNM 557 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC----ceEEEcCh-hhHHHHHHHhccccccC----CceEE
Confidence 3444 44 4558999999888766544 34555544 89999875 44788888999999999 58888
Q ss_pred eecc
Q 029768 95 REYD 98 (188)
Q Consensus 95 ~~~~ 98 (188)
+...
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 7653
No 257
>smart00457 MACPF membrane-attack complex / perforin.
Probab=32.63 E-value=1e+02 Score=23.93 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.7
Q ss_pred EeCCCCCCCHHHHHHHhhcCCC
Q 029768 25 VTGLPSSASWQDLKDHMRRAGD 46 (188)
Q Consensus 25 V~nLp~~~t~~dL~~~F~~~G~ 46 (188)
+.+||...+..+...||..||+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCC
Confidence 4578999999999999999997
No 258
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=32.60 E-value=1.5e+02 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=24.3
Q ss_pred eeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 47 VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 47 i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
|..|.+...-. +|-||+.+..+++..+|+.+.+.
T Consensus 36 i~~i~vp~~fp-GYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELK-GYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCC-cEEEEEEEChHHHHHHHhcCCCE
Confidence 55554443333 39999999889999999877654
No 259
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=32.53 E-value=80 Score=24.09 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhhc----CCCeeEEEEEeCCCCcEEEEE--eCCHHHHHHHHHHcc
Q 029768 30 SSASWQDLKDHMRR----AGDVCFSQVFRDRGGMTGIVD--YTSYDDMKYAIRKLD 79 (188)
Q Consensus 30 ~~~t~~dL~~~F~~----~G~i~~~~i~~~~~~~~afV~--F~~~eda~~Ai~~ln 79 (188)
..++.++|++++.+ .|.+-++. ||-|. |++.++...+|..+-
T Consensus 101 ~~IsveEIqDiVE~~L~~~~~~ay~r--------fa~~~~~f~~~~~~~~~~~~~~ 148 (154)
T PRK00464 101 REVPSKEIGELVMEELKKLDEVAYVR--------FASVYRSFKDVDDFEEEIEELA 148 (154)
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEEE--------hhhhcCCCCCHHHHHHHHHHHH
Confidence 45778888877653 55665554 56565 899999999987754
No 260
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=32.36 E-value=1.3e+02 Score=25.88 Aligned_cols=74 Identities=9% Similarity=-0.013 Sum_probs=51.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeC-----CCC--c-----------EEEEEeCCHHHHHHHHHHcc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-----RGG--M-----------TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~-----~~~--~-----------~afV~F~~~eda~~Ai~~ln 79 (188)
+.+.-||+.|+--++.++-|.++- ..|.|.-|-++-. +.+ + -+|+.+...++..++|+.|-
T Consensus 221 P~GIDiYfeNVGG~~lDavl~nM~-~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~ 299 (343)
T KOG1196|consen 221 PEGIDIYFENVGGKMLDAVLLNMN-LHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLL 299 (343)
T ss_pred CCcceEEEeccCcHHHHHHHHhhh-hccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHH
Confidence 466789999999999888888764 4566655544321 111 0 57888888888899998887
Q ss_pred cceeccccceeEEEEeec
Q 029768 80 RSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 80 g~~l~g~~~~r~I~V~~~ 97 (188)
-..-+| +|++.++
T Consensus 300 ~~ikeg-----KI~y~ed 312 (343)
T KOG1196|consen 300 PYIKEG-----KITYVED 312 (343)
T ss_pred HHHhcC-----ceEEehh
Confidence 666666 7776654
No 261
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.22 E-value=1.6e+02 Score=21.15 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=26.7
Q ss_pred CHHHHHHHhhcCC-CeeEEEEEeCCCC--c-EEEEEeC-CHHHHHHHHHHccc
Q 029768 33 SWQDLKDHMRRAG-DVCFSQVFRDRGG--M-TGIVDYT-SYDDMKYAIRKLDR 80 (188)
Q Consensus 33 t~~dL~~~F~~~G-~i~~~~i~~~~~~--~-~afV~F~-~~eda~~Ai~~lng 80 (188)
.-.++-+.|..+| .++.++--..+.. . .-||+++ +.++++.||+.|..
T Consensus 54 sL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 54 SLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHH
Confidence 3456667788776 4555443222222 2 4455555 34567788877754
No 262
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=32.20 E-value=1.3e+02 Score=26.98 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=33.5
Q ss_pred EEeCCCCCC--CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 24 LVTGLPSSA--SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 24 ~V~nLp~~~--t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
++|||+.-. ....+.++..+||+|..+.+.. .-+|...+++.++.++.+
T Consensus 41 l~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~-----~~~vvv~dpe~~~~vl~~ 91 (504)
T PLN00110 41 LLGALPLLGNMPHVALAKMAKRYGPVMFLKMGT-----NSMVVASTPEAARAFLKT 91 (504)
T ss_pred eeechhhcCCchHHHHHHHHHHhCCeEEEEcCC-----ccEEEECCHHHHHHHHHh
Confidence 357775432 3566778888999986655421 246788899999988864
No 263
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=32.06 E-value=1e+02 Score=25.97 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=28.9
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 31 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
.+|++||+++|..+.+-. . ...|.+.+.+.|+.+++.+..
T Consensus 128 ~Vtd~ei~~~y~~~~~~~--~--------v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQPKV--T--------VQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhhhE--E--------EEEEEecChHHHHHHHHHHHC
Confidence 489999999998764311 1 466777788888888877643
No 264
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.02 E-value=1.3e+02 Score=18.53 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=15.2
Q ss_pred EEEEeCCHHHHHHHHHHccccee
Q 029768 61 GIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 61 afV~F~~~eda~~Ai~~lng~~l 83 (188)
.+..+-+.+++++|++.||...|
T Consensus 41 ~is~~V~~~~~~~a~~~Lh~~f~ 63 (64)
T cd04917 41 NLCFLVKEEDKDEVVQRLHSRLF 63 (64)
T ss_pred EEEEEEeHHHHHHHHHHHHHHHh
Confidence 33344456788999988876543
No 265
>PRK12378 hypothetical protein; Provisional
Probab=31.64 E-value=1.8e+02 Score=23.74 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=36.6
Q ss_pred CCCcEEEEeCCCCC--CCHHHHHHHhhcCCC-e---eEEEEEeCCCCcEEEEEeC--CHHH-HHHHHH
Q 029768 18 RSDYRVLVTGLPSS--ASWQDLKDHMRRAGD-V---CFSQVFRDRGGMTGIVDYT--SYDD-MKYAIR 76 (188)
Q Consensus 18 ~~~~~v~V~nLp~~--~t~~dL~~~F~~~G~-i---~~~~i~~~~~~~~afV~F~--~~ed-a~~Ai~ 76 (188)
+.+..|+|--|..+ =|..+|+.+|.++|- + -.+..+.++ .|+|+|. +.++ ++.||+
T Consensus 89 PgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~---kG~i~i~~~~~d~~~e~aie 153 (235)
T PRK12378 89 PNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDH---KGVFVFEGDDEDELLEALID 153 (235)
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeec---ceEEEeCCCCHHHHHHHHHh
Confidence 46688889888776 578999999999864 2 124445554 4677774 3344 334444
No 266
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=31.43 E-value=1.7e+02 Score=24.85 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.0
Q ss_pred EEEEEeCC
Q 029768 60 TGIVDYTS 67 (188)
Q Consensus 60 ~afV~F~~ 67 (188)
.||++-.+
T Consensus 88 TGFLngrn 95 (354)
T KOG2146|consen 88 TGFLNGRN 95 (354)
T ss_pred ehhccccc
Confidence 45555433
No 267
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=31.42 E-value=88 Score=27.58 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHhhcC--CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee
Q 029768 27 GLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~~--G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
.-+..++++||++-|.+. +......+-. .....+.-.||.+.||++.....|
T Consensus 16 ~r~e~v~~~ev~~~~~~~~~~~~~~~~FEq-----vkt~~~~P~eDle~~I~~haKVaL 69 (386)
T PF01696_consen 16 RRPEQVTWQEVEAEFQEGDMFLLDKYSFEQ-----VKTYWMEPGEDLEEAIRQHAKVAL 69 (386)
T ss_pred CCCCeEEHHHHHhhhhccccccccceeeEe-----EEEEEcCCCcCHHHHHHhcCEEEe
Confidence 346779999999988442 2222111111 334455666799999986544444
No 268
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=31.11 E-value=99 Score=25.34 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=37.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.+--....||++|++.. +-|..||.+.|..-..-|..|.. .++.+.+++||+. .|..|.|
T Consensus 148 ~~~~~~GIlft~~~~KG---~~L~~fL~~~~~~pk~IIfIDD~-------~~nl~sv~~a~k~-~~I~f~G 207 (252)
T PF11019_consen 148 APSFYDGILFTGGQDKG---EVLKYFLDKINQSPKKIIFIDDN-------KENLKSVEKACKK-SGIDFIG 207 (252)
T ss_pred CceeecCeEEeCCCccH---HHHHHHHHHcCCCCCeEEEEeCC-------HHHHHHHHHHHhh-CCCcEEE
Confidence 33445567888887776 67888999888532222222222 4567788888876 5666655
No 269
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.10 E-value=74 Score=20.71 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeC
Q 029768 34 WQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYT 66 (188)
Q Consensus 34 ~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~ 66 (188)
-.||-.+.-+|| .|...++..|.. .|||.|-
T Consensus 14 gcdlcr~il~fGl~i~rgd~sTDGk--WCyiv~w 45 (69)
T cd04894 14 GCDLCRIILEFGLNITRGDDSTDGR--WCYIVFW 45 (69)
T ss_pred ccHHHHHHHHhceEEEecccccCCc--EEEEEEE
Confidence 356766666788 477777776654 8999885
No 270
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=31.07 E-value=1.4e+02 Score=20.97 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=25.5
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCc--EEEEEeCCHHHHHHH
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYA 74 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV~F~~~eda~~A 74 (188)
-+.+|.+.+..+| |....|....+++ |++++..+.+.+.++
T Consensus 24 vWPEv~~~l~~~G-i~~ysIf~~g~~~~LF~~~E~~~~~~~~~~ 66 (106)
T PF05336_consen 24 VWPEVLAALREAG-IRNYSIFRDGDTGRLFMYMETDDFDADMAA 66 (106)
T ss_dssp --HHHHHHHHHCT-EEEEEEEEETTTTEEEEEEEECT-CHHHHH
T ss_pred cCHHHHHHHHHCC-CeEEEEEEeCCCCEEEEEEEecChhhHHHH
Confidence 3567777777765 5555676666533 999999994333333
No 271
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=31.02 E-value=62 Score=24.71 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 32 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 32 ~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
..-++|++||..|=.... ++. +-+..|.+.+.|.+.|++.
T Consensus 114 ~~l~~I~~fF~~YK~le~-----~k~--~~~~g~~~~~~A~~~I~~~ 153 (155)
T cd00412 114 HLLDEIKHFFEHYKDLEG-----KKE--VKVAGWKDKEEALKIIKES 153 (155)
T ss_pred HHHHHHHHHHHHhcccCC-----CCc--eEECcCcCHHHHHHHHHHH
Confidence 345788999998853321 111 4455788888888888753
No 272
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.94 E-value=67 Score=20.79 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=22.1
Q ss_pred EEEEEeCCHHHHHHHHHHcccceecc
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
+++|.|.+..+|.+|-+.|....|..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999988888777765
No 273
>PLN02373 soluble inorganic pyrophosphatase
Probab=30.27 E-value=64 Score=25.48 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=25.9
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
.-++|++||..|=... ++. +.+..|.+.+.|.++|++.
T Consensus 137 ~l~~I~~fF~~YK~le------gK~--v~v~g~~~~~~A~~~I~~~ 174 (188)
T PLN02373 137 RLAEIRRFFEDYKKNE------NKE--VAVNDFLPAEAAIEAIQYS 174 (188)
T ss_pred HHHHHHHHHHHhcccC------CCe--EEeCCccCHHHHHHHHHHH
Confidence 3567999999885322 111 5566788888888888654
No 274
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=30.10 E-value=68 Score=27.66 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=32.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIV 63 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV 63 (188)
....+...|||+|-.+.-=++|.+++.++| .+..+....+..+.+++|
T Consensus 57 arLG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i 105 (330)
T KOG2855|consen 57 ARLGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATI 105 (330)
T ss_pred HhcCcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEE
Confidence 456778999999999998899999999976 233333333333334443
No 275
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.00 E-value=24 Score=25.87 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=41.1
Q ss_pred EEEeCCC--CCCCHHHHHHHhhcC-CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 23 VLVTGLP--SSASWQDLKDHMRRA-GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 23 v~V~nLp--~~~t~~dL~~~F~~~-G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
..|+.+. ..++...|...+.+. +....+.+..-..+ +..+.|.+.+|++.+++ .....+.+ ..|.++.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~-~fl~~F~~~~d~~~vl~-~~p~~~~~----~~~~l~~ 88 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDN-LFLFQFESEEDRQRVLK-GGPWNFNG----HFLILQR 88 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCC-eEEEEEEeccceeEEEe-cccccccc----cchhhhh
Confidence 4455542 346777787777652 32223333332222 89999999999999985 45556666 3555543
No 276
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=29.86 E-value=93 Score=24.25 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHhhcCCCeeEE
Q 029768 30 SSASWQDLKDHMRRAGDVCFS 50 (188)
Q Consensus 30 ~~~t~~dL~~~F~~~G~i~~~ 50 (188)
..+|-++|.++|.+|++=..+
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~ 127 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHC 127 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEE
Confidence 568999999999999974333
No 277
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=29.74 E-value=1.9e+02 Score=19.89 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhhcCCCee---EEEE-EeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 31 SASWQDLKDHMRRAGDVC---FSQV-FRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i~---~~~i-~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
+++.++|++.+.+.=.|. .+.| ..|..+ -+|.+.+.+|.+.|++.+
T Consensus 24 d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedg--d~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 24 DLNMDGLREKVEELFSLSPDADLSLTYTDEDG--DVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred CCCHHHHHHHHHHHhCCCCCCcEEEEEECCCC--CEEEEccHHHHHHHHHHH
Confidence 577777766554422221 2223 334443 789999999999999875
No 278
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=29.66 E-value=43 Score=21.57 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=11.2
Q ss_pred CHHHHHHHhhcCCCeeEE
Q 029768 33 SWQDLKDHMRRAGDVCFS 50 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~ 50 (188)
|--|+++++.+||.+.++
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 456899999999987653
No 279
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=29.35 E-value=1.7e+02 Score=19.25 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=26.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeeEEEE
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAGDVCFSQV 52 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i 52 (188)
|.|.+=.-.++.+|++.||-+-|....+.+
T Consensus 4 viva~RHIHms~~da~~l~~~dg~~v~ve~ 33 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFGQDGQFVSVEV 33 (71)
T ss_pred EEEEccccCCCHHHHHHhCCCCCCEEEEEE
Confidence 567777778999999999999999888877
No 280
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=29.24 E-value=1.5e+02 Score=25.96 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=33.1
Q ss_pred CCCHHHHHHHhhc----CCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcc
Q 029768 31 SASWQDLKDHMRR----AGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 31 ~~t~~dL~~~F~~----~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~ln 79 (188)
+....+|..+|-. +|-|+.+.+...+... +.++.|.+.++|.+|+..+-
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 3444567777753 5667877776554322 66788999999999886553
No 281
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=29.24 E-value=1.9e+02 Score=19.75 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=33.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhc-CC-----CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRR-AG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~-~G-----~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
.-|+|..++..++-++|.+-+.. |. .++- .. .|..| =-|+|.+.++++.|++.+
T Consensus 9 gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~-kw-~DEEG--Dp~tiSS~~EL~EA~rl~ 68 (83)
T cd06404 9 GDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTL-KW-IDEEG--DPCTISSQMELEEAFRLY 68 (83)
T ss_pred CcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEE-EE-ECCCC--CceeecCHHHHHHHHHHH
Confidence 35778888888888887655443 21 2221 11 23322 246789999999999754
No 282
>PLN02757 sirohydrochlorine ferrochelatase
Probab=29.03 E-value=63 Score=24.46 Aligned_cols=53 Identities=11% Similarity=0.000 Sum_probs=25.8
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 20 DYRVLVTGLPSSAS-WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 20 ~~~v~V~nLp~~~t-~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
..-|.|+.=+.+.. .++++++...+.+-.....+ ..||++|..+ ++..||++|
T Consensus 14 ~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V-----~~aFle~~~P-sl~eal~~l 67 (154)
T PLN02757 14 DGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIV-----EPAHMELAEP-SIKDAFGRC 67 (154)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcE-----EEEEEecCCC-CHHHHHHHH
Confidence 35566766555433 35555554443221100011 1799998764 344455444
No 283
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=28.56 E-value=64 Score=25.84 Aligned_cols=41 Identities=10% Similarity=-0.051 Sum_probs=26.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHcc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~ln 79 (188)
.-++|++||..|=... .+.++ |++..+.+.+.|.+.|++.+
T Consensus 156 ~l~~I~~fF~~YK~le------gk~~k~~~~~g~~~~~~A~~vI~~~~ 197 (205)
T PRK00642 156 LLDRLQHYFLTYKATP------GELIKGVEIVGIYGKEEAQKVIQLAH 197 (205)
T ss_pred HHHHHHHHHHHHcCcc------cCCCCeEEECCCcCHHHHHHHHHHHH
Confidence 4567888998874321 11111 67777888888888887644
No 284
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=28.29 E-value=1.8e+02 Score=21.53 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
-.+.|-||+ ..+|++|++++..+-.+++.+. + -+| +-++++++++++.|...
T Consensus 73 f~W~lalGd--~~Ls~eEf~~L~~~~~~LV~~r---g-----~WV-~ld~~~l~~~~~~~~~~ 124 (141)
T PF12419_consen 73 FDWELALGD--EELSEEEFEQLVEQKRPLVRFR---G-----RWV-ELDPEELRRALAFLEKA 124 (141)
T ss_pred ceEEEEECC--EECCHHHHHHHHHcCCCeEEEC---C-----EEE-EECHHHHHHHHHHHHhc
Confidence 345677776 6799999999999887775431 1 223 34577888888776653
No 285
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.76 E-value=1.5e+02 Score=18.17 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=29.9
Q ss_pred CCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEE----eCCHHHHHHHHHHcccc
Q 029768 32 ASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVD----YTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 32 ~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~----F~~~eda~~Ai~~lng~ 81 (188)
-...+|-.+|.++| .|..+.......++.+.+. -.+.++++.++++|...
T Consensus 12 g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~ 66 (79)
T cd04881 12 GVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEAL 66 (79)
T ss_pred cHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcC
Confidence 35567888888887 4666554333221233333 24677778888877654
No 286
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.65 E-value=1.4e+02 Score=17.86 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=25.5
Q ss_pred CCHHHHHHHhhcCC-CeeEEEEEeCCCCcEE--EEEeCCHHHHHHHHHHc
Q 029768 32 ASWQDLKDHMRRAG-DVCFSQVFRDRGGMTG--IVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 32 ~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~a--fV~F~~~eda~~Ai~~l 78 (188)
-...+|-.+|.++| .|..+.+......+.+ .|..++. ++.++++.|
T Consensus 11 g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l 59 (71)
T cd04903 11 GAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEI 59 (71)
T ss_pred ChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHH
Confidence 35677888888876 5766665542212233 3455543 444555444
No 287
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.51 E-value=1.4e+02 Score=17.82 Aligned_cols=43 Identities=9% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHHHHHhhcCC-CeeEEEEEeCCCCcEE--EEEeCCHHHHHHHHHH
Q 029768 35 QDLKDHMRRAG-DVCFSQVFRDRGGMTG--IVDYTSYDDMKYAIRK 77 (188)
Q Consensus 35 ~dL~~~F~~~G-~i~~~~i~~~~~~~~a--fV~F~~~eda~~Ai~~ 77 (188)
.+|-++|.++| .|..+........+.+ .+..++.+++.++|+.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 46667777776 5766654433311234 4455677777777754
No 288
>PLN02707 Soluble inorganic pyrophosphatase
Probab=27.31 E-value=41 Score=28.08 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCeeEEEEEeCCCC-cEEEE-EeCCHHHHHHHHHHccc
Q 029768 34 WQDLKDHMRRAGDVCFSQVFRDRGG-MTGIV-DYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 34 ~~dL~~~F~~~G~i~~~~i~~~~~~-~~afV-~F~~~eda~~Ai~~lng 80 (188)
-++|++||..|-... ++.. .|||+ +|.+.+.|.+.|++.+.
T Consensus 207 l~~I~~fF~~YK~~e------GK~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 207 LTAIRDWFRDYKIPD------GKPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred HHHHHHHHHHhcCCC------CCceeeccccCCcCCHHHHHHHHHHHHH
Confidence 478888898874221 1111 16665 79999999988876554
No 289
>COG5584 Predicted small secreted protein [Function unknown]
Probab=27.16 E-value=67 Score=22.64 Aligned_cols=31 Identities=6% Similarity=0.093 Sum_probs=24.8
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC
Q 029768 27 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 57 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~ 57 (188)
||..+.--+-+++.|.++|+|+--+|...+.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 5666667777899999999999888877653
No 290
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=27.04 E-value=1.5e+02 Score=23.88 Aligned_cols=30 Identities=7% Similarity=0.161 Sum_probs=21.9
Q ss_pred CCCCcEEEEeCCCCC---------CCHHHHHHHhhcCCC
Q 029768 17 RRSDYRVLVTGLPSS---------ASWQDLKDHMRRAGD 46 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~---------~t~~dL~~~F~~~G~ 46 (188)
.+.+..|.|+|..+. .+.+.|+++|.+.|-
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF 44 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGY 44 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCC
Confidence 356788899987652 356678889998885
No 291
>PLN02655 ent-kaurene oxidase
Probab=26.92 E-value=1.6e+02 Score=25.89 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=33.8
Q ss_pred EEeCCCCC---CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 24 LVTGLPSS---ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 24 ~V~nLp~~---~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
+||||..- --...+.+++.+||+|..+.+.. .-+|...+++.++.++.+
T Consensus 9 ~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~-----~~~vvv~~pe~~k~il~~ 60 (466)
T PLN02655 9 VIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGA-----SSVVVLNSTEVAKEAMVT 60 (466)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEECC-----EeEEEeCCHHHHHHHHHh
Confidence 46776332 13567888899999987665421 456778888888888754
No 292
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=26.57 E-value=2e+02 Score=19.05 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=33.7
Q ss_pred EEEeCCCCCCCHHHHHHHhh-------cCCCeeEEEEEeCC--CC---c--EE-EEEeCCHHHHHHHH
Q 029768 23 VLVTGLPSSASWQDLKDHMR-------RAGDVCFSQVFRDR--GG---M--TG-IVDYTSYDDMKYAI 75 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~-------~~G~i~~~~i~~~~--~~---~--~a-fV~F~~~eda~~Ai 75 (188)
|.+-.|...++++++++++. ++-.|+.+.+..+- .. + +| +++|++.++.+.-+
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 44456888899998866543 34456776665442 11 2 44 56899998876554
No 293
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.82 E-value=1.4e+02 Score=20.79 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHhhcCCCee-EEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 28 LPSSASWQDLKDHMRRAGDVC-FSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~~~G~i~-~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
+-+.+++..|..-|-..|.-. -+.+-.|-=..+|.|+|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 445566677766665555311 1111111001199999999999999987663
No 294
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=25.67 E-value=1.3e+02 Score=23.26 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCC--CCCHHHHHHHhhcCCCeeEE
Q 029768 28 LPS--SASWQDLKDHMRRAGDVCFS 50 (188)
Q Consensus 28 Lp~--~~t~~dL~~~F~~~G~i~~~ 50 (188)
+|. ..+.+.|.+++.+||+|.-.
T Consensus 90 ~P~~~~~t~e~~~~LL~~yGPLwv~ 114 (166)
T PF12385_consen 90 EPANASYTAEGLANLLREYGPLWVA 114 (166)
T ss_pred CCcccccCHHHHHHHHHHcCCeEEE
Confidence 444 67999999999999998644
No 295
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=25.66 E-value=34 Score=25.05 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHhhc---CCCeeEEEEEeCCC--Cc--EEEEEeCCH
Q 029768 28 LPSSASWQDLKDHMRR---AGDVCFSQVFRDRG--GM--TGIVDYTSY 68 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~~---~G~i~~~~i~~~~~--~~--~afV~F~~~ 68 (188)
-|+.+|..||+++|.+ |-.|+.-.+..|.. +. .||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 4667999999999986 44444333333322 22 899998765
No 296
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=25.58 E-value=81 Score=24.97 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHhhcCCCeeEEEEEeCCC
Q 029768 28 LPSSASWQDLKDHMRRAGDVCFSQVFRDRG 57 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~~~G~i~~~~i~~~~~ 57 (188)
|.+..+++|++.+|-.-..|+++.++.+..
T Consensus 55 l~~~fs~eev~Hw~lp~~~Vv~syVve~~~ 84 (190)
T PF02799_consen 55 LAPVFSEEEVKHWFLPRKNVVYSYVVEDPD 84 (190)
T ss_dssp EEEE--HHHHHHHHS-BTTTEEEEEEEETT
T ss_pred cccccCHHHHHhhcccCCCeEEEEEEecCC
Confidence 445579999999998877888887777765
No 297
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=25.46 E-value=1.6e+02 Score=17.75 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=24.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 50 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~ 50 (188)
..++.++|.+-......++|+.++..+|.....
T Consensus 3 f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~ 35 (80)
T smart00292 3 FKGKVFVITGKFDKNERDELKELIEALGGKVTS 35 (80)
T ss_pred cCCeEEEEeCCCCCccHHHHHHHHHHcCCEEec
Confidence 356888888744567788999999999865433
No 298
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=25.41 E-value=1.8e+02 Score=21.02 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEE
Q 029768 30 SSASWQDLKDHMRRAGDVCFSQV 52 (188)
Q Consensus 30 ~~~t~~dL~~~F~~~G~i~~~~i 52 (188)
..||.++|++.|.+|-.-..+-|
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeEE
Confidence 48999999999999875444333
No 299
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.36 E-value=1.7e+02 Score=20.30 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=27.4
Q ss_pred hhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee
Q 029768 41 MRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 41 F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
+.+||.|.++.-.. --.|.|.+.++++..+.+|....+
T Consensus 22 LrkfG~v~Y~Skk~-----kY~vlYvn~~~ve~~~~kl~~~kf 59 (90)
T COG4471 22 LRKFGDVHYVSKKS-----KYVVLYVNEQDVEQIVEKLSRLKF 59 (90)
T ss_pred HHhcCCEEEEecce-----eEEEEEECHHHHHHHHHHHhhcee
Confidence 56899998764322 234678899999999988866554
No 300
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=25.32 E-value=86 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=17.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhc
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRR 43 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~ 43 (188)
...+..++++.||. .+|+++|+..
T Consensus 61 ekeg~~i~~g~lPt---~~eVe~Fl~~ 84 (105)
T PF09702_consen 61 EKEGNYIIVGYLPT---DEEVEDFLDD 84 (105)
T ss_pred cCCCCEEecCCCCC---hHHHHHHHHH
Confidence 45667888999985 5677777654
No 301
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=25.25 E-value=1.6e+02 Score=24.26 Aligned_cols=20 Identities=5% Similarity=0.205 Sum_probs=16.7
Q ss_pred EEEEEeCCHHHHHHHHHHcc
Q 029768 60 TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~ln 79 (188)
..|..|.+.+.|+.|.+.|.
T Consensus 241 tvF~l~~~~~~a~~~~~~l~ 260 (271)
T PRK00343 241 CVFAEFDTEAEAEQVLAQLP 260 (271)
T ss_pred ceEEEcCCHHHHHHHHHHhh
Confidence 68888999999988887765
No 302
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.22 E-value=1.5e+02 Score=19.88 Aligned_cols=37 Identities=19% Similarity=-0.020 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee
Q 029768 46 DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 46 ~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
.|..+. ..+...+|-|||=.+..++.+||+.+-+...
T Consensus 33 ~I~Si~-~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIF-APDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEE-E-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEE-EeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 454443 3343444999999999999999987755443
No 303
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=25.07 E-value=1.3e+02 Score=21.21 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=25.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcC--CCeeEEEEEeCCCCcEEEEEeCC
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTS 67 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~--G~i~~~~i~~~~~~~~afV~F~~ 67 (188)
-||||+++..+.+.--+.+-+.+ |.++-+.-..+.. +|+|-++-+
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eq-G~~~~t~G~ 75 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTES-GFEFQTFGE 75 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCC-CcEEEecCC
Confidence 48999998887644333333323 5555444322222 388777654
No 304
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=25.05 E-value=3.9e+02 Score=23.63 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=40.8
Q ss_pred CCHHHHHHHhhcCC--C-eeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHccc----ceeccc
Q 029768 32 ASWQDLKDHMRRAG--D-VCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDR----SEFRNA 86 (188)
Q Consensus 32 ~t~~dL~~~F~~~G--~-i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~lng----~~l~g~ 86 (188)
++.+|++.+-.++| + |..+.++....|+ -|...-++.++|..+.++|=| +.+.|+
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~ 88 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGE 88 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCc
Confidence 57788888888887 3 5677777765554 344445679999999998888 777775
No 305
>PLN03018 homomethionine N-hydroxylase
Probab=24.93 E-value=2.1e+02 Score=26.00 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=36.5
Q ss_pred CCCCCCCcEEEEeCCCCCCC----HHHHHHHhhcC-CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 14 GVSRRSDYRVLVTGLPSSAS----WQDLKDHMRRA-GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t----~~dL~~~F~~~-G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
.||.+.+. -+||||..-.. ...+.+.|.++ |+|..+.+.. .-+|...+++.++.++.+
T Consensus 41 ~PPgp~~~-P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~-----~~~vvvsdpe~ikevl~~ 103 (534)
T PLN03018 41 LPPGPPGW-PILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAG-----THTITINSDEIAREAFRE 103 (534)
T ss_pred CCcCCCCC-CeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCC-----ccEEEECCHHHHHHHHHh
Confidence 34444444 44888865321 12466777765 6887665421 457888899999999864
No 306
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=24.84 E-value=1.3e+02 Score=21.07 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=12.9
Q ss_pred EEEEEeCCHHHHHHHH
Q 029768 60 TGIVDYTSYDDMKYAI 75 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai 75 (188)
...|||.+.+.|..+.
T Consensus 55 ~vviEFps~~~ar~~y 70 (96)
T COG5470 55 NVVIEFPSLEAARDCY 70 (96)
T ss_pred EEEEEcCCHHHHHHHh
Confidence 8899999988776653
No 307
>PF15063 TC1: Thyroid cancer protein 1
Probab=24.46 E-value=49 Score=22.22 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=33.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCee---EEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVC---FSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~---~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
.+--+.||=.+++...|+.+|..-|... .+.|+.. .-.+.++...||..|
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~--------~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWE--------CAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHh--------hCCCHHHHHHHHHhc
Confidence 4556789999999999999999999642 2222221 234566666676544
No 308
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=24.42 E-value=1.8e+02 Score=23.07 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=31.7
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHcc
Q 029768 32 ASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 32 ~t~~dL~~~F~~~G~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~ln 79 (188)
++.++..+++.+++.-. +-|+.|... +-+.+...+.++|..||+.+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 46788888888776432 334445331 256777799999999998754
No 309
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=24.07 E-value=59 Score=27.45 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc--cceec
Q 029768 31 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFR 84 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln--g~~l~ 84 (188)
.++++|++.+|..|-+ ......|.|.+.+.|+.++++|. |..|.
T Consensus 129 ~Vtd~ei~~~y~~~~~----------~~~~~~I~~~~~~~A~~i~~~l~~~G~dF~ 174 (310)
T PRK01326 129 ELTDEAYKKAYEEYTP----------EVTAQIIRLDNEDKAKSVLEEAKAEGADFA 174 (310)
T ss_pred CCCHHHHHHHHHHhCc----------cccchhhhHhhhHHHHHHHHHHHhCCCCHH
Confidence 5899999999988621 00134567888889999999885 56554
No 310
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=23.81 E-value=1.7e+02 Score=22.81 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCHHHHHHHhh--------cCC--CeeEEEEEeCCCCc---EEEEEeCC
Q 029768 31 SASWQDLKDHMR--------RAG--DVCFSQVFRDRGGM---TGIVDYTS 67 (188)
Q Consensus 31 ~~t~~dL~~~F~--------~~G--~i~~~~i~~~~~~~---~afV~F~~ 67 (188)
..+.++++++|. .|| .|..+.|+.|..+. +.+|-..+
T Consensus 94 ~~~~e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP~~~ 143 (196)
T PF01076_consen 94 DLDPEQQKRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVPIDE 143 (196)
T ss_pred chhhHHHHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEeeccc
Confidence 355666555543 578 68899999998875 55554443
No 311
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=23.69 E-value=1.3e+02 Score=22.10 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=23.5
Q ss_pred EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
+-++.+.+.. ...+|..|.+..+.| ++|.|..
T Consensus 28 ~~icv~g~~~-~~~~L~~l~~~~~~~----~~i~v~~ 59 (145)
T PF13689_consen 28 FRICVLGDDP-FAEALSTLAGKQVGG----RPIRVRR 59 (145)
T ss_pred eEEEEECChH-HHHHHHHhhhcccCC----CcEEEEE
Confidence 6666666655 556788898899998 5888764
No 312
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=23.66 E-value=76 Score=21.78 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=26.0
Q ss_pred EEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 52 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 52 i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
++.+... ||.|+|.-.++. .|+ ...|.+|-++...+.|-+.
T Consensus 3 miYnSd~-y~VV~~~~~~~~-~~l-~~gGyEIVDK~~~rEifi~ 43 (85)
T PF12091_consen 3 MIYNSDN-YCVVEFPPDAGH-PAL-ARGGYEIVDKNARREIFID 43 (85)
T ss_pred eeecCCc-eEEEEecCCCCc-cch-hcCCcEEeecCCCceEEeC
Confidence 4455555 999999644333 344 3578888776555666664
No 313
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=23.49 E-value=2e+02 Score=18.40 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhhcCC---CeeEEEEEeCCCCcEE--EEEeC-CHHHHHHHHHHcccce
Q 029768 31 SASWQDLKDHMRRAG---DVCFSQVFRDRGGMTG--IVDYT-SYDDMKYAIRKLDRSE 82 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G---~i~~~~i~~~~~~~~a--fV~F~-~~eda~~Ai~~lng~~ 82 (188)
.+.+..|-++..+|| .|....|..-.++.+| +|++. +.+++++|++.|....
T Consensus 13 ~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~ 70 (76)
T PF09383_consen 13 SAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQG 70 (76)
T ss_dssp SSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred CcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCC
Confidence 455566777777776 3444444443332244 45563 4566788888776543
No 314
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.43 E-value=2.1e+02 Score=23.99 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=35.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-C--C----------CeeEEEEEeCCCCcEEEEEeCCHH-----HHHHHHHHcccce
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR-A--G----------DVCFSQVFRDRGGMTGIVDYTSYD-----DMKYAIRKLDRSE 82 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~-~--G----------~i~~~~i~~~~~~~~afV~F~~~e-----da~~Ai~~lng~~ 82 (188)
-|.|.--++++|.+.+-.++.. . + +-..|.|.....|+-+|+.|.+.| |+..||++|..+.
T Consensus 100 ~vevdyrgyevtvEnflr~LTgR~~~~tprSKrlltDe~SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~ 178 (309)
T KOG1349|consen 100 DVEVDYRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEGSNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKK 178 (309)
T ss_pred cceeecccchhHHHHHHHHHcCCCCCCCchhhhhcccCCCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhh
Confidence 4555555666666665554432 1 1 112334444444557899998765 5678888885543
No 315
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=23.38 E-value=4.3e+02 Score=25.12 Aligned_cols=9 Identities=0% Similarity=0.394 Sum_probs=4.0
Q ss_pred CCcEEEEeC
Q 029768 19 SDYRVLVTG 27 (188)
Q Consensus 19 ~~~~v~V~n 27 (188)
++..|.|..
T Consensus 38 getSiViSD 46 (1027)
T KOG3580|consen 38 GETSIVISD 46 (1027)
T ss_pred CceeEEEee
Confidence 334454543
No 316
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.10 E-value=58 Score=27.90 Aligned_cols=66 Identities=17% Similarity=0.074 Sum_probs=38.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc-----EEEEEeCCHHHHHHHHHHcccc
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-----TGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~-----~afV~F~~~eda~~Ai~~lng~ 81 (188)
+|.+-..-|+.+-+......+-=++++++|+.|..........++ ||-|+|++..++-+.++ ||..
T Consensus 57 ~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~-ln~~ 127 (331)
T KOG2603|consen 57 PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLN-LNNV 127 (331)
T ss_pred CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhc-ccCC
Confidence 344444455556676666555555666777766555444433322 99999998666665553 4443
No 317
>PLN02235 ATP citrate (pro-S)-lyase
Probab=22.86 E-value=4e+02 Score=23.87 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=36.6
Q ss_pred CCHHHHHHHhhc---CC--C-eeEEEEEeCCCCcEEEEEe-CCHHHHHHHHHHccccee
Q 029768 32 ASWQDLKDHMRR---AG--D-VCFSQVFRDRGGMTGIVDY-TSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 32 ~t~~dL~~~F~~---~G--~-i~~~~i~~~~~~~~afV~F-~~~eda~~Ai~~lng~~l 83 (188)
++.+|+.++..+ .| . |+.+.++....++-|-|.| .+.++|..++++|=|++|
T Consensus 35 ~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l 93 (423)
T PLN02235 35 TESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEV 93 (423)
T ss_pred CCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCce
Confidence 566777777666 33 2 6667777665554444554 478999999999989888
No 318
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=22.80 E-value=3.2e+02 Score=20.11 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=26.8
Q ss_pred cEEEEeCCC----CCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 21 YRVLVTGLP----SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 21 ~~v~V~nLp----~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
|.+++.++. ..+.-.||+++|.+.|- ..|.-... .|+.-|-.=.+.++++..|++
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~Gf-~~V~Tyi~-SGNvvf~~~~~~~~l~~~ie~ 62 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLGF-TNVRTYIQ-SGNVVFESDRDPAELAAKIEK 62 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT-TTEEEEEESS-HHHHHHHHHH
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcCC-CCceEEEe-eCCEEEecCCChHHHHHHHHH
Confidence 445666552 34889999999999883 33333322 222333333345555555544
No 319
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=22.58 E-value=1.6e+02 Score=21.72 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=30.3
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 32 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 32 ~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
.+.++|.++....+-..-++-.... +..++....+.++++.+++.+.
T Consensus 26 ~~~~~~~~~~~~~~~p~vvKp~~g~-gs~gv~~~~~~~~l~~~~~~~~ 72 (184)
T PF13535_consen 26 DSEEELRAFAEDLGFPFVVKPVDGS-GSRGVFIVHSPEELEAALAEIR 72 (184)
T ss_dssp CSHHHHHHHHHHSSSSEEEEESS-S-TTTT-EEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccc-cCCCEEEeCCHHHHHHHHHHHH
Confidence 4678999999887633222221111 2267777899999999987764
No 320
>PRK12866 YciI-like protein; Reviewed
Probab=22.39 E-value=2.5e+02 Score=19.33 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=24.1
Q ss_pred CCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 45 GDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 45 G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
|.|..+--..+.. |.+-.+++++.++|+.-|+ -|-....|
T Consensus 35 G~ll~aGp~~~~~~G~~ii~~a~s~~e~~~~l~-~DPf~~~g 75 (97)
T PRK12866 35 GELLLAGALADPADGAVLVFEGDSPAAAEAFAR-ADPYVRNG 75 (97)
T ss_pred CEEEEeCCCCCCCCcEEEEEEeCCHHHHHHHHH-cCChhhcC
Confidence 5554443332332 3255668899999988775 45555566
No 321
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.35 E-value=2.6e+02 Score=23.17 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEE----EEe--CCHHHHHHHHHHcccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGI----VDY--TSYDDMKYAIRKLDRS 81 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~af----V~F--~~~eda~~Ai~~lng~ 81 (188)
-...|.|-++++..-...|++++..+..|...-...+.. ..+ |.. .+.+.|+++++.+.+.
T Consensus 179 ~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 245 (255)
T COG1058 179 YSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGE--VRLRELVIRAEARDEEEADALLRWLEGR 245 (255)
T ss_pred EEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCc--eeccceEEEEecCCHHHHHHHHHHHHHH
Confidence 345677778888888888888888775444322222211 222 444 6777888887766543
No 322
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=22.25 E-value=2.5e+02 Score=18.67 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=40.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~ 81 (188)
..|+|.|-|--+ +.+-.+|..-| .|..+.+....+.+ +-++...+.+.++..+++|+..
T Consensus 5 isi~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 5 FSLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCC
Confidence 356777766554 36678898877 68877766443332 5666678888899888888643
No 323
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=21.90 E-value=1.5e+02 Score=19.48 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=16.6
Q ss_pred EEEEEeCCHHHHHHHHHHcccceec
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
..+|.|+..++.+.|. .|.|..|.
T Consensus 56 ~~i~~~~gi~~r~~Ae-~l~g~~l~ 79 (84)
T PF01782_consen 56 SLIVKFEGIDDREAAE-ALRGCELY 79 (84)
T ss_dssp EEEEEETT--SHHHHH-TTTT-EEE
T ss_pred EEEEEEcCCCCHHHHH-hhCCCEEE
Confidence 8899999999988886 57776653
No 324
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.71 E-value=1.3e+02 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=20.2
Q ss_pred eCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC
Q 029768 26 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 57 (188)
Q Consensus 26 ~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~ 57 (188)
-.|.+.|+.++|+..|.+- .+.|+.|++
T Consensus 59 LqIdpev~~edikkryRkl----SilVHPDKN 86 (250)
T KOG1150|consen 59 LQIDPEVTDEDIKKRYRKL----SILVHPDKN 86 (250)
T ss_pred HhcCCCCCHHHHHHHHHhh----heeecCCCC
Confidence 3467789999999999874 344566654
No 325
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=21.70 E-value=1.3e+02 Score=23.11 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEe-CCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 32 ASWQDLKDHMRRAGDVCFSQVFR-DRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 32 ~t~~dL~~~F~~~G~i~~~~i~~-~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
.+.+||.+....+|-..-++... .-+| .|.+...+.+|++.|++.+..
T Consensus 15 ~~~~~l~~a~~~iG~P~vlK~~~~GYDG-kGq~~i~~~~dl~~a~~~~~~ 63 (172)
T PF02222_consen 15 DSLEDLEEAAESIGFPAVLKTRRGGYDG-KGQFVIRSEEDLEKAWQELGG 63 (172)
T ss_dssp SSHHHHHHHHHHHTSSEEEEESSSSCTT-TTEEEESSGGGHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcCCCEEEEccCcCcCC-CccEEECCHHHHHHHHHhcCC
Confidence 57789999999988543222111 1222 566778889999999998843
No 326
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=21.62 E-value=1.8e+02 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=16.0
Q ss_pred EEEEEeCCHHHHHHHH-HHc
Q 029768 60 TGIVDYTSYDDMKYAI-RKL 78 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai-~~l 78 (188)
.+|..|.+.+.++.++ ++|
T Consensus 235 t~F~l~~~~~~~~~~~~~~~ 254 (288)
T PRK00650 235 TLFVRYPEILEKDPSYAAQI 254 (288)
T ss_pred CEEEEeCCHHHHHHHHHHHh
Confidence 7899999999888888 555
No 327
>PHA01632 hypothetical protein
Probab=21.48 E-value=99 Score=19.52 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=16.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhc
Q 029768 23 VLVTGLPSSASWQDLKDHMRR 43 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~ 43 (188)
|.|..+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345689999999999876543
No 328
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=21.47 E-value=3e+02 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=16.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEE
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFS 50 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~ 50 (188)
.||||++|.....+.|++. .+..|..+
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l 33 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINV 33 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEc
Confidence 4999999977765555432 34445443
No 329
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=21.45 E-value=31 Score=28.71 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=50.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHH-H--HHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 15 VSRRSDYRVLVTGLPSSASWQD-L--KDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~d-L--~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
++.+.-+.++++|+-..+..+- | ...|+.+-.+....++.+..+ .++|+.|.......++..+-+++.+.-
T Consensus 91 ~~~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~ 167 (290)
T KOG0226|consen 91 APAPAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGK 167 (290)
T ss_pred CCCcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccC
Confidence 4456778889998877776665 3 567777776666666665443 299999998887777776666666554
No 330
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=21.45 E-value=1.4e+02 Score=21.44 Aligned_cols=23 Identities=9% Similarity=0.214 Sum_probs=16.0
Q ss_pred cCCCeeEEEEEeCCCCcEEEEEeCC
Q 029768 43 RAGDVCFSQVFRDRGGMTGIVDYTS 67 (188)
Q Consensus 43 ~~G~i~~~~i~~~~~~~~afV~F~~ 67 (188)
+-|.|..++....++ |+|+.|++
T Consensus 28 ~NGtv~qI~~Y~~pN--Yvf~~FEn 50 (121)
T PF06919_consen 28 KNGTVAQIEQYMTPN--YVFMRFEN 50 (121)
T ss_pred CCCcEEEEeeecCCC--EEEEEecC
Confidence 346666666666555 99999986
No 331
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=21.41 E-value=4e+02 Score=20.76 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHHhh----------cCCCeeEEEEEeCCCCcEEEEEe--C--CHHHHHHHHHHccccee
Q 029768 19 SDYRVLVTGLPSS-ASWQDLKDHMR----------RAGDVCFSQVFRDRGGMTGIVDY--T--SYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 19 ~~~~v~V~nLp~~-~t~~dL~~~F~----------~~G~i~~~~i~~~~~~~~afV~F--~--~~eda~~Ai~~lng~~l 83 (188)
.++.|+|.=.|.. +|+.-++.-.. -+|.+...-....+. . -++|+ . +.+.|.+|+. +-...|
T Consensus 80 ~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~G-q-iifei~~~~~~~~~AkeAlr-~A~~KL 156 (172)
T TIGR00279 80 MGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKIG-Q-KIFSVWTKPSNFDVAKEALR-RAAMKF 156 (172)
T ss_pred cceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECcC-C-EEEEEEeecCCHHHHHHHHH-HHhccC
Confidence 4567777766666 44444444333 466665543333222 1 22222 3 6688999986 456677
Q ss_pred ccccceeEEEEe
Q 029768 84 RNAFSRSYVRVR 95 (188)
Q Consensus 84 ~g~~~~r~I~V~ 95 (188)
... ..|.+.
T Consensus 157 P~~---~kiv~~ 165 (172)
T TIGR00279 157 PVP---CKIVIE 165 (172)
T ss_pred CCc---EEEEEe
Confidence 764 455544
No 332
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=21.40 E-value=29 Score=28.28 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCCCC--CCHHHHHHHhhcCCC
Q 029768 18 RSDYRVLVTGLPSS--ASWQDLKDHMRRAGD 46 (188)
Q Consensus 18 ~~~~~v~V~nLp~~--~t~~dL~~~F~~~G~ 46 (188)
+.+..|+|.-|..+ -|..+|+.+|.++|-
T Consensus 88 P~Gvaiive~lTDN~nRt~~~ir~~~~K~gg 118 (234)
T PF01709_consen 88 PGGVAIIVECLTDNKNRTVSDIRSIFKKNGG 118 (234)
T ss_dssp TTTEEEEEEEEES-HHHHHHHHHHHHHTTT-
T ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHcCc
Confidence 34677888877666 578899999999874
No 333
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=21.36 E-value=2.2e+02 Score=18.26 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.7
Q ss_pred EEEEEeCCHHHHHHHHHHcccceecc
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
|+.|-|...++++.+|+++-|.++-+
T Consensus 13 ~v~~pwcg~~ece~~ike~t~at~rc 38 (68)
T PF09180_consen 13 FVLVPWCGDEECEEKIKEETGATIRC 38 (68)
T ss_dssp EEEEEES-SHHHHHHHHHHHS-EEEE
T ss_pred EEEEEccCCHHHHHHHHHhcCCcEeE
Confidence 67777888899999999888777666
No 334
>PHA03075 glutaredoxin-like protein; Provisional
Probab=21.25 E-value=3.4e+02 Score=19.88 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHHhhcCCCeeEEEEEeCCCCc-EEEEEeC
Q 029768 36 DLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYT 66 (188)
Q Consensus 36 dL~~~F~~~G~i~~~~i~~~~~~~-~afV~F~ 66 (188)
-|-+||..+|.-.-.-+..++.++ .|||.|.
T Consensus 58 lInn~~~~lgne~v~lfKydp~t~qmA~V~i~ 89 (123)
T PHA03075 58 LINNFFKHLGNEYVSLFKYDPETKQMAFVDIS 89 (123)
T ss_pred hHHHHHHhhcccEEEEEEEcCCCCcEEEEehh
Confidence 355677777742223345565544 8888654
No 335
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=21.25 E-value=3.5e+02 Score=22.58 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=7.5
Q ss_pred CCcEEEEeCCC
Q 029768 19 SDYRVLVTGLP 29 (188)
Q Consensus 19 ~~~~v~V~nLp 29 (188)
....|+|..++
T Consensus 148 ~nvsVvVspv~ 158 (262)
T PLN00066 148 GRLKVVVAPVL 158 (262)
T ss_pred ccEEEEEeccc
Confidence 45677887765
No 336
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=21.13 E-value=1.2e+02 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHhh----cCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHH
Q 029768 27 GLPSSASWQDLKDHMR----RAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAI 75 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~----~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai 75 (188)
+|-.+-|--||+++|- ..|-|+.+.|+..+.. +.||+-.++.+++++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 4555667778999984 3566778777765543 28999888888877764
No 337
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=21.10 E-value=3.6e+02 Score=20.06 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=39.0
Q ss_pred CcEEEEeCCC-CCCCHHHHHHHhhc---------CC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 20 DYRVLVTGLP-SSASWQDLKDHMRR---------AG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 20 ~~~v~V~nLp-~~~t~~dL~~~F~~---------~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
...+||+-.. ...++.|+.-|-++ |- .|.--.++.+.+ -|..-|.+-+.|-.|...|-|++++.
T Consensus 66 tlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlfn~~~dlq~fii~dd--raifm~kdge~a~e~k~fll~qd~~a 140 (164)
T KOG4357|consen 66 TLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLFNAHVDLQRFIIDDD--RAIFMFKDGEQAFEAKDFLLGQDFCA 140 (164)
T ss_pred eEEEEEEecCCCCCChhhccchhHHHHHHHHHHhhccccceEEEEecCC--eEEEEEeChhHHHHHHHHhhccchhe
Confidence 3567887653 34555555322211 11 222222334444 58888999999999999898998876
No 338
>PRK08818 prephenate dehydrogenase; Provisional
Probab=21.08 E-value=1.9e+02 Score=25.20 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=33.3
Q ss_pred cEEEEeCCC-CC-CCHHHHHHHhhcCC-CeeEEEEEeCCCCcEE-EEEeCCHHHHH
Q 029768 21 YRVLVTGLP-SS-ASWQDLKDHMRRAG-DVCFSQVFRDRGGMTG-IVDYTSYDDMK 72 (188)
Q Consensus 21 ~~v~V~nLp-~~-~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~a-fV~F~~~eda~ 72 (188)
+.|+| .|| .. -.-.++-.+|..+| .|+.+.+.....+.|+ ||+|.+.+|+.
T Consensus 296 ~~l~~-~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~~~~ 350 (370)
T PRK08818 296 LTLSV-YLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGSDRA 350 (370)
T ss_pred eEEEE-ECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccccHH
Confidence 44544 454 22 25567888898888 6888888665555555 56888866543
No 339
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=21.03 E-value=1.6e+02 Score=22.40 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 34 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 34 ~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
-++|++||..|-... .+..+..-.|.+.+.|.+.|+..
T Consensus 113 ~~~i~~fF~~YK~l~-------~~k~~~~~~~~~~~~A~~~i~~~ 150 (156)
T PF00719_consen 113 LDEIEHFFRNYKDLE-------ENKWVEVGGWEDAEEALKVIKEA 150 (156)
T ss_dssp HHHHHHHHHHTTTTS-------TTEEEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcC-------CCCeEEeCCCcCHHHHHHHHHHH
Confidence 467889999987664 11114455688888888888654
No 340
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.84 E-value=2.5e+02 Score=18.19 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=26.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEe
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDY 65 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F 65 (188)
.|+|---...---..|-..|...| .|..+.|....++ +++-.|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG-~~LDtF 46 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDG-LALDIF 46 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCC-eEEEEE
Confidence 445543333344456667777776 7999999877666 454444
No 341
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=20.71 E-value=2.8e+02 Score=18.79 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=15.5
Q ss_pred EEeCCCCCCCHHHHHHHhhcCC
Q 029768 24 LVTGLPSSASWQDLKDHMRRAG 45 (188)
Q Consensus 24 ~V~nLp~~~t~~dL~~~F~~~G 45 (188)
+.+.|...+++++++++...++
T Consensus 53 ~~s~i~kfl~e~~~~~l~~~~~ 74 (95)
T PF02938_consen 53 LKSPIAKFLSEEELKALIERLG 74 (95)
T ss_dssp EECTTCCCCHHHHHHHHHHHTT
T ss_pred ccCcccccCCHHHHHHHHHHhC
Confidence 3566777777777777777764
No 342
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=20.71 E-value=1e+02 Score=25.28 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=27.5
Q ss_pred HHHHHH-HhhcCCCeeEEEEEeCCCCcEEEEEe---CCHHHHHHHHHHc
Q 029768 34 WQDLKD-HMRRAGDVCFSQVFRDRGGMTGIVDY---TSYDDMKYAIRKL 78 (188)
Q Consensus 34 ~~dL~~-~F~~~G~i~~~~i~~~~~~~~afV~F---~~~eda~~Ai~~l 78 (188)
+++|+. .|..++++..+++.....++|--|.| +++|+..++++.|
T Consensus 21 ~~~i~~~~~~~~~~~~k~D~~R~~RtG~pEvv~a~gKt~eqi~~i~~~~ 69 (254)
T COG1691 21 EEQIKSLAFESLGEFAKLDIHREKRTGFPEVVFAPGKTPEQIVEIVEVL 69 (254)
T ss_pred HHHHhhhhhhhhchhhhccchhhccCCCceEeecCCCCHHHHHHHHHHH
Confidence 444554 56677877777777766554333333 4677776666544
No 343
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=20.68 E-value=1.8e+02 Score=26.62 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 31 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
-+.++||-+-|.-+-.-.+.+-+...++ ++=+.|.++++|++-.+++...
T Consensus 89 liWdqELY~nf~y~q~r~ffhtFegddc-~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 89 LIWDQELYQNFEYRQPRTFFHTFEGDDC-QAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eeehHHhhhhceeccCccceeeeccccc-eeeecccCHHHHHHHHHHHHHH
Confidence 3677777777765544333333333232 5556799999999887766544
No 344
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=20.55 E-value=60 Score=28.13 Aligned_cols=8 Identities=38% Similarity=0.381 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 029768 35 QDLKDHMR 42 (188)
Q Consensus 35 ~dL~~~F~ 42 (188)
.||.++|+
T Consensus 172 ~dLw~WyE 179 (453)
T KOG2888|consen 172 ADLWDWYE 179 (453)
T ss_pred hHHHHHhh
Confidence 33444433
No 345
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=20.52 E-value=3.9e+02 Score=23.05 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=26.6
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~ln 79 (188)
+.+++.++..++|-..- |+.... ++.+.....+.++++.|++.+.
T Consensus 90 ~~~ea~~~~~~~g~PvV--vKp~~~~~gkGV~iv~~~~el~~a~~~~~ 135 (379)
T PRK13790 90 RKKDALTYIENCELPVV--VKKDGLAAGKGVIIADTIEAARSAIEIMY 135 (379)
T ss_pred CHHHHHHHHHhcCCCEE--EEeCCCCCCCCEEEECCHHHHHHHHHHHH
Confidence 45666666666663221 222211 1256666789999999998754
No 346
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=20.43 E-value=1.8e+02 Score=18.05 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=24.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC 48 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~ 48 (188)
+.-..++.++| +--.....++|+.+..++|...
T Consensus 3 ~~~F~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v 35 (78)
T PF00533_consen 3 PKIFEGCTFCI-SGFDSDEREELEQLIKKHGGTV 35 (78)
T ss_dssp TTTTTTEEEEE-SSTSSSHHHHHHHHHHHTTEEE
T ss_pred CCCCCCEEEEE-ccCCCCCHHHHHHHHHHcCCEE
Confidence 45567899999 4445567788999999998654
No 347
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=20.38 E-value=36 Score=21.14 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=12.2
Q ss_pred EEEEEeCC-HHHHHHHHHHcccceecc
Q 029768 60 TGIVDYTS-YDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 60 ~afV~F~~-~eda~~Ai~~lng~~l~g 85 (188)
||||..++ .+|+--+-+.|++.+-..
T Consensus 10 fGFv~~~~~~~DifIp~~~l~~A~~gD 36 (58)
T PF08206_consen 10 FGFVIPDDGGEDIFIPPRNLNGAMDGD 36 (58)
T ss_dssp -EEEEECT-TEEEEE-HHHHTTS-TT-
T ss_pred CEEEEECCCCCCEEECHHHHCCCCCCC
Confidence 99999887 333322333455444333
No 348
>PLN02971 tryptophan N-hydroxylase
Probab=20.35 E-value=1.9e+02 Score=26.07 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=35.6
Q ss_pred EEeCCCCCC---C-HHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 24 LVTGLPSSA---S-WQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 24 ~V~nLp~~~---t-~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
+||||+.-. . ...+.+++.+|| +|..+.+. . .-+|...+++.++.++.+ ++..+.+
T Consensus 67 iiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G--~---~~~vvv~dpe~ikevl~~-~~~~f~~ 127 (543)
T PLN02971 67 IVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLG--N---THVIPVTCPKIAREIFKQ-QDALFAS 127 (543)
T ss_pred cccchHHhccCCcHhHHHHHHHHHhCCceEEEEcC--C---cceEEECCHHHHHHHHHh-cchhhcC
Confidence 468875431 1 345788889999 67554431 1 246778899999999864 3444443
No 349
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=20.13 E-value=1.3e+02 Score=25.98 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=15.5
Q ss_pred EEEEEeCCHHHHHHHHHHcccc
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~ 81 (188)
|++|.|.|+++|..-++ .+|+
T Consensus 214 y~DiifgNe~EA~af~~-~~~~ 234 (343)
T KOG2854|consen 214 YADIIFGNEDEAAAFAR-AHGW 234 (343)
T ss_pred cceEEEcCHHHHHHHHH-hhCC
Confidence 89999999998876553 4444
No 350
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.03 E-value=3.2e+02 Score=20.87 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 27 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
.|+..+.++-|+++-+-.|-|.... .. --.+.|-+.+.+.+||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~---E~---D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE---EY---DLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee---ec---cEEEEeccHHHHHHHHHHH
Confidence 5899999999999988888775432 11 1456788999999999876
Done!